ideal.res

## htsjdk.samtools.metrics.StringHeader
# picard.sam.markduplicates.EstimateLibraryComplexity INPUT=[../../other.bam] OUTPUT=res.txt    MIN_IDENTICAL_BASES=5 MAX_DIFF_RATE=0.03 MIN_MEAN_QUALITY=20 MAX_GROUP_RATIO=500 MAX_READ_LENGTH=0 MIN_GROUP_COUNT=2 READ_NAME_REGEX=<optimized capture of last three ':' separated fields as numeric values> OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=956185 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
## htsjdk.samtools.metrics.StringHeader
# Started on: Fri Feb 10 11:27:40 MSK 2017

## METRICS CLASS	picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	SECONDARY_OR_SUPPLEMENTARY_RDS	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown	0	2435811	0	0	0	348036	18795	0.142883	8046443

## HISTOGRAM	java.lang.Integer
duplication_group_count	Unknown
1	1807757
2	227281
3	41309
4	8657
5	2031
6	518
7	140
8	53
9	23
10	3
11	3
12	1