Add missing tables

Author: ursm

api/app/models/drmdb/batch.rb

@@ -0,0 +1,3 @@
+class DRMDB::Batch < DRMDB::Record
+  self.table_name = 'batch'
+end

api/app/models/drmdb/submission_component.rb

@@ -0,0 +1,5 @@
+class DRMDB::SubmissionComponent < DRMDB::Record
+  self.table_name = 'submission_component'
+
+  belongs_to :submission_group, class_name: 'DRMDB::SubmissionGroup', foreign_key: 'grp_id', primary_key: 'grp_id'
+end

api/app/models/drmdb/submission_group.rb

@@ -3,8 +3,9 @@ class DRMDB::SubmissionGroup < DRMDB::Record
 
   belongs_to :submission, class_name: "DRMDB::Submission", foreign_key: "sub_id"
 
-  has_many :accession_relations, class_name: "DRMDB::AccessionRelation", foreign_key: "grp_id", primary_key: "grp_id"
-  has_many :ext_relations,       class_name: "DRMDB::ExtRelation",       foreign_key: "grp_id", primary_key: "grp_id"
+  has_many :submission_components, class_name: "DRMDB::SubmissionComponent", foreign_key: "grp_id", primary_key: "grp_id"
+  has_many :accession_relations,   class_name: "DRMDB::AccessionRelation",   foreign_key: "grp_id", primary_key: "grp_id"
+  has_many :ext_relations,         class_name: "DRMDB::ExtRelation",         foreign_key: "grp_id", primary_key: "grp_id"
 
   has_many :accession_entities, through: :accession_relations
   has_many :meta_entities,      through: :accession_relations

api/db/bioproject_migrate/20240827022556_bioproject_init.rb

@@ -1,4 +1,4 @@
-class BioProjectInit < ActiveRecord::Migration[7.2]
+class BioProjectInit < ActiveRecord::Migration[8.0]
   def change
     execute 'CREATE SCHEMA mass'
 

api/db/biosample_migrate/20240829001416_biosample_init.rb

@@ -1,4 +1,4 @@
-class BioSampleInit < ActiveRecord::Migration[7.2]
+class BioSampleInit < ActiveRecord::Migration[8.0]
   def change
     execute 'CREATE SCHEMA mass'
 

api/db/drasearch_migrate/20241023004659_dra_search_init.rb

@@ -1,4 +1,4 @@
-class DRASearchInit < ActiveRecord::Migration[7.2]
+class DRASearchInit < ActiveRecord::Migration[8.0]
   def change
     execute 'CREATE SCHEMA sra'
 

api/db/drmdb_migrate/20240827024216_drmdb_init.rb

@@ -1,4 +1,4 @@
-class DRMDBInit < ActiveRecord::Migration[7.2]
+class DRMDBInit < ActiveRecord::Migration[8.0]
   def change
     execute 'CREATE SCHEMA mass'
 
@@ -20,6 +20,19 @@ def change
       t.bigint :p_acc_id
     end
 
+    create_table 'mass.batch', id: false do |t|
+      t.bigint :bat_id, primary_key: true
+
+      t.integer   :status,       null: false
+      t.timestamp :updated,      null: false, default: -> { "DATE_TRUNC('second', NOW())" }
+      t.bigint    :main_meta_id, null: false
+      t.bigint    :sub_meta_id,  null: false
+      t.bigint    :usr_id,       null: false
+      t.integer   :serial,       null: false
+      t.text      :machine
+      t.integer   :priority,     null: false, default: 50
+    end
+
     create_table 'mass.ext_entity', id: false do |t|
       t.bigint :ext_id, primary_key: true
 
@@ -87,6 +100,14 @@ def change
       t.text    :note
     end
 
+    create_table 'mass.submission_component', id: false do |t|
+      t.bigint :det_id, primary_key: true
+
+      t.bigint :grp_id,      null: false
+      t.text   :field_key,   null: false
+      t.text   :field_value, null: false
+    end
+
     create_table 'mass.submission_group', id: false do |t|
       t.bigint :grp_id, primary_key: true
 

api/db/drmdb_schema.rb

@@ -30,6 +30,17 @@
     t.bigint "p_acc_id"
   end
 
+  create_table "batch", primary_key: "bat_id", force: :cascade do |t|
+    t.integer "status", null: false
+    t.datetime "updated", precision: nil, default: -> { "date_trunc('second'::text, now())" }, null: false
+    t.bigint "main_meta_id", null: false
+    t.bigint "sub_meta_id", null: false
+    t.bigint "usr_id", null: false
+    t.integer "serial", null: false
+    t.text "machine"
+    t.integer "priority", default: 50, null: false
+  end
+
   create_table "ext_entity", primary_key: "ext_id", force: :cascade do |t|
     t.text "acc_type", null: false
     t.text "ref_name", null: false
@@ -85,6 +96,12 @@
     t.text "note"
   end
 
+  create_table "submission_component", primary_key: "det_id", force: :cascade do |t|
+    t.bigint "grp_id", null: false
+    t.text "field_key", null: false
+    t.text "field_value", null: false
+  end
+
   create_table "submission_group", primary_key: "grp_id", force: :cascade do |t|
     t.bigint "sub_id", null: false
     t.integer "submit_version", null: false

api/db/submitterdb_migrate/20240827023903_submitterdb_init.rb

@@ -1,4 +1,4 @@
-class SubmitterDBInit < ActiveRecord::Migration[7.2]
+class SubmitterDBInit < ActiveRecord::Migration[8.0]
   def change
     execute 'CREATE SCHEMA mass'