DESCRIPTION

Package: SBGNview
Title: "SBGNview: Data Analysis, Integration and Visualization on SBGN Pathways"
Description: 
   SBGNview is a tool set for pathway based data visalization,
   integration and analysis. SBGNview is similar and complementary to
   the widely used Pathview, with the following key features:
   1. Pathway definition by the widely adopted Systems Biology
   Graphical Notation (SBGN); 2. Supports multiple major pathway
   databases beyond KEGG (Reactome, MetaCyc, SMPDB, PANTHER, METACROP)
   and user defined pathways; 3. Covers 5,200 reference pathways and
   over 3,000 species by default; 4. Extensive graphics controls,
   including glyph and edge attributes, graph layout and sub-pathway
   highlight; 5. SBGN pathway data manipulation, processing,
   extraction and analysis.
Version: 1.5.1
Author:
    Xiaoxi Dong*, Kovidh Vegesna*, Weijun Luo
Maintainer: Weijun Luo <luo_weijun@yahoo.com>
Depends:
    R (>= 3.6),
    pathview,
    SBGNview.data
Imports: 
    Rdpack,
    grDevices,
    methods,
    stats,
    utils,
    xml2,
    rsvg,
    igraph,
    rmarkdown,
    knitr,
    SummarizedExperiment,
    AnnotationDbi,
    httr,
    KEGGREST,
    bookdown
RdMacros: Rdpack
License: AGPL-3
LazyData: FALSE
Collate:
    SBGN.to.SVG.R
    SBGNview.R
    SBGNview.obj.fun.R
    color.panel.R
    data.R
    download.utilities.R
    highlight.utilities.R
    mapping.utilities.R
    parsing.utilities.R
    plot.utilities.R
    zzz.R
RoxygenNote: 7.1.1
Suggests:
    testthat,
    gage
VignetteBuilder: knitr
Encoding: UTF-8
biocViews: GeneTarget, Pathways, GraphAndNetwork, Visualization, GeneSetEnrichment,
        DifferentialExpression, GeneExpression, Microarray, RNASeq,
        Genetics, Metabolomics, Proteomics, SystemsBiology, Sequencing, GeneTarget
URL: https://github.com/datapplab/SBGNview
BugReports: https://github.com/datapplab/SBGNview/issues