run_tests.yml

name: tests

# We run the test suite on every push
on: [push, pull_request]

jobs:
  build-linux:
    runs-on: ubuntu-latest

    steps:
    - uses: actions/checkout@v3

    # Note that miniconda is installed by default in environments
    - name: Set up conda environment
      uses: conda-incubator/setup-miniconda@v2
      with:
        activate-environment: datascience
        environment-file: linux_environment.yml
        python-version: '3.10'
        auto-activate-base: true

    - name: Add conda to system path
      run: |
        # $CONDA is an environment variable pointing to the root of the miniconda directory
        echo $CONDA/bin >> $GITHUB_PATH
        export PATH="$CONDA/bin:$PATH"
        conda init bash

    - name: Setup python requirements
      run: |
        source activate datascience
        python -m pip install --upgrade pip
        python -m pip --version
        python -m pip install -r requirements.txt
        python -m pip install -r docs/requirements.txt
        python -m pip install -r requirements-tests.txt
        python setup.py develop

    - name: Run Tests
      run: |
        source activate datascience
        make test

    - name: Upload coverage data to Coveralls
      run: |
        source activate datascience
        coveralls --service=github
      env:
        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

    - name: Push docs
      if: github.ref_name == 'master' && github.event_name == 'push'
      run: |
        source activate datascience
        python -m pip install -r docs/requirements.txt
        python -m pip uninstall pandoc
        conda install pandoc
        git config --global user.name github-actions
        git config --global user.email github-actions@github.com
        echo "-- building docs --"
        make docs
        echo "-- pushing docs --"
        rm -rf doc_build
        git clone --quiet --branch=gh-pages $GITHUB_SERVER_URL/$GITHUB_REPOSITORY doc_build
        cp -r docs/_build/html/* doc_build
        cd doc_build
        git add -A
        git commit -m "Generated by commit $GITHUB_SHA, pushed by GitHub run $GITHUB_RUN_ID."
        echo "-- try to push --"
        git push "https://${{github.actor}}:${{github.token}}@github.com/${{github.repository}}.git"

        rm -rf doc_build