iSEE/DESCRIPTION at master · cramirezs/iSEE · GitHub

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Package: iSEE
Title: Interactive SummarizedExperiment Explorer
Version: 1.5.11
Date: 2019-09-21
Authors@R: c(person("Kevin", "Rue-Albrecht", role = "aut", email = "[email protected]", comment = c(ORCID = "0000-0003-3899-3872")),
    person("Federico", "Marini", role="aut", email="[email protected]", comment = c(ORCID = '0000-0003-3252-7758')),
    person("Charlotte", "Soneson", role=c("aut", "cre"), email="[email protected]", comment = c(ORCID = '0000-0003-3833-2169')),
    person("Aaron", "Lun", role="aut", email="[email protected]", comment = c(ORCID = '0000-0002-3564-4813')))
Description: Provides functions for creating an interactive
    Shiny-based graphical user interface for exploring data
    stored in SummarizedExperiment objects, including row- and
    column-level metadata. Particular attention is given to
    single-cell data in a SingleCellExperiment object with
    visualization of dimensionality reduction results.
Depends:
    SummarizedExperiment,
    SingleCellExperiment
Imports:
    methods,
    BiocGenerics,
    S4Vectors,
    utils,
    stats,
    shiny,
    shinydashboard,
    shinyAce,
    shinyjs,
    DT,
    rintrojs,
    ggplot2,
    colourpicker,
    igraph,
    vipor,
    mgcv,
    reshape2,
    rentrez,
    AnnotationDbi,
    graphics,
    grDevices,
    viridisLite,
    cowplot,
    scales,
    dplyr
Suggests:
    testthat,
    BiocStyle,
    knitr,
    rmarkdown,
    scRNAseq,
    scater,
    DelayedArray (>= 0.7.44),
    Rtsne,
    irlba,
    RColorBrewer,
    viridis,
    org.Mm.eg.db,
    htmltools
URL: https://github.com/csoneson/iSEE
BugReports: https://github.com/csoneson/iSEE/issues
biocViews: ImmunoOncology, Visualization, GUI, DimensionReduction,
    FeatureExtraction, Clustering, Transcription,
    GeneExpression, Transcriptomics, SingleCell, CellBasedAssays
License: MIT + file LICENSE
VignetteBuilder: knitr
Encoding: UTF-8
RoxygenNote: 6.1.1