open_science_paper.Rnw

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%%% Content: Open-Science-Paper LaTeX Scaffold 
%%% Usage: Collaborative scientific paper writing 
%%% Author: Claas-Thido Pfaff
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%%% Document class: open_science_paper (Based on Koma-Script: article) %%%
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%

\documentclass[color=false, csvdata=false]{osp/subdocuments/open_science_paper} 

%% Available class options [defaults]
% - color true/[false]: Changes between colored output and a black and white theme 
% - csvdata true/[false]: With csv data enabled you can use the csv file under
%   the data folder to insert title header information into the document.
% - gitinfo true/[false]: Include git information into the title header of the 
%   document. This requires the setup of git hooks which you can do by issuing 
%   the make task (make githooks). After that you need to specify the url of the 
%   git repository inside of the style file and you are done.
% - print true/[false] switches between the color model rgb which is optimal for displays 
%   and the cmyk color model which is required for professional printing. 
% - linenumbers true/[false]: Switch on/off line numbers for the whole document.
% - sectionnumbers true/[false]: Switch between numbered and numberless sections 
% - autolayout [true]/false: Switch between the nice automatic calculated typearea layout 
%   (Koma script) and a fixed geometry page layout (geometry package). You need to set the 
%   geometry inside of the style file if you choose false. 
% - twosidelayout true/[false]: Switch between two and one side page layout.
% - reversepagelayout [false]/true reverse the order of odd and even side margins. This 
%   option can be used to start the paper on a left or right page. 
% - resetdefaultclassoptions true/[false] resets the default options the open science paper 
%   loads the scrartcl class. After that you can modify every option via the open science 
%   paper class call. For example to change the calculated typearea you can use 
%   \documentclass[resetdefaultclassoptions=true, DIV=7]{osp/subdocuments/open_science_paper}  
% - parindent true/[false] Switch paragraph indent on or off.

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%%% Load user options %%%
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\input{usr/subdocuments/options/osp_document_options.sty} 

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%%% Begin the document %%%
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\begin{document}

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%%% Document preparations %%%
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%

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%%% Preferences for Knitr %%%
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<<chunk_global_r_options, child='usr/subdocuments/options/osp_global_r_options.Rnw', eval=TRUE>>=
@ 

%%%--------------------------------------------------------------%%%
%%% Document content %%%
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%

%%%-------------------------------------------------%%%
%%% Include header %%%
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\begin{ospHeader}

<<subdoc_content_header, child='usr/subdocuments/chapters/osp_header.Rnw', eval=T>>=
@

%%%-------------------------------------------------%%%
%%% Include abstract %%%
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<<subdoc_content_abstract, child='usr/subdocuments/chapters/osp_abstract_section.Rnw', eval=T>>=
@

\end{ospHeader}

% Start column layout %
\begin{ospColumLayout}

%%%-------------------------------------------------%%%
%%% Include introduction %%%
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<<subdoc_content_introduction, child='usr/subdocuments/chapters/osp_introduction_section.Rnw', eval=T>>=
@

%%%-------------------------------------------------%%%
%%% Include material and methods %%%
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<<subdoc_content_material_methods, child='usr/subdocuments/chapters/osp_material_methods_section.Rnw', eval=T>>=
@

%%%-------------------------------------------------%%%
%%% Include results %%%
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<<subdoc_content_results, child='usr/subdocuments/chapters/osp_results_section.Rnw', eval=T>>=
@

%%%-------------------------------------------------%%%
%%% Include discussion %%%
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<<subdoc_content_discussion, child='usr/subdocuments/chapters/osp_discussion_section.Rnw', eval=T>>=
@

%%%-------------------------------------------------%%%
%%% Include acknowledgements %%%
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<<subdoc_content_acknowledgement, child='usr/subdocuments/chapters/osp_acknowledgements_section.Rnw', eval=T>>=
@

%%%-------------------------------------------------%%%
%%% Include the bibliography %%%
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<<options_bibliography, child='usr/subdocuments/chapters/osp_bibliography_section.Rnw', eval=T>>=
@

% End column layout %
\end{ospColumLayout}

% uncomment the following lines to get an appendix section.

% \begin{ospAppendix} 
% <<subdoc_content_appendix, child='usr/subdocuments/chapters/osp_appendix_section.Rnw', eval=T>>=
% @ 
% \end{ospAppendix} 

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\end{document}