present day probabilities notebook - grid_probabilities_csv not found

[RichardScottOZ]

This looks like a case - given the zip reference

of lifting one the outputs from a deeper file path in the previous runs to use - the Americas version?

FileNotFoundError                         Traceback (most recent call last)
Cell In[7], line 1
----> 1 df = pd.read_csv(input_filename)
      2 coastlines = gpd.read_file(coastlines_filename)
      3 training_data = pd.read_csv(training_filename)

File ~/miniconda3/envs/sdm/lib/python3.12/site-packages/pandas/io/parsers/readers.py:1026, in read_csv(filepath_or_buffer, sep, delimiter, header, names, index_col, usecols, dtype, engine, converters, true_values, false_values, skipinitialspace, skiprows, skipfooter, nrows, na_values, keep_default_na, na_filter, verbose, skip_blank_lines, parse_dates, infer_datetime_format, keep_date_col, date_parser, date_format, dayfirst, cache_dates, iterator, chunksize, compression, thousands, decimal, lineterminator, quotechar, quoting, doublequote, escapechar, comment, encoding, encoding_errors, dialect, on_bad_lines, delim_whitespace, low_memory, memory_map, float_precision, storage_options, dtype_backend)
   1013 kwds_defaults = _refine_defaults_read(
   1014     dialect,
   1015     delimiter,
   (...)
   1022     dtype_backend=dtype_backend,
   1023 )
   1024 kwds.update(kwds_defaults)
-> 1026 return _read(filepath_or_buffer, kwds)

File ~/miniconda3/envs/sdm/lib/python3.12/site-packages/pandas/io/parsers/readers.py:620, in _read(filepath_or_buffer, kwds)
    617 _validate_names(kwds.get("names", None))
    619 # Create the parser.
--> 620 parser = TextFileReader(filepath_or_buffer, **kwds)
    622 if chunksize or iterator:
    623     return parser

File ~/miniconda3/envs/sdm/lib/python3.12/site-packages/pandas/io/parsers/readers.py:1620, in TextFileReader.__init__(self, f, engine, **kwds)
   1617     self.options["has_index_names"] = kwds["has_index_names"]
   1619 self.handles: IOHandles | None = None
-> 1620 self._engine = self._make_engine(f, self.engine)

File ~/miniconda3/envs/sdm/lib/python3.12/site-packages/pandas/io/parsers/readers.py:1880, in TextFileReader._make_engine(self, f, engine)
   1878     if "b" not in mode:
   1879         mode += "b"
-> 1880 self.handles = get_handle(
   1881     f,
   1882     mode,
   1883     encoding=self.options.get("encoding", None),
   1884     compression=self.options.get("compression", None),
   1885     memory_map=self.options.get("memory_map", False),
   1886     is_text=is_text,
   1887     errors=self.options.get("encoding_errors", "strict"),
   1888     storage_options=self.options.get("storage_options", None),
   1889 )
   1890 assert self.handles is not None
   1891 f = self.handles.handle

File ~/miniconda3/envs/sdm/lib/python3.12/site-packages/pandas/io/common.py:873, in get_handle(path_or_buf, mode, encoding, compression, memory_map, is_text, errors, storage_options)
    868 elif isinstance(handle, str):
    869     # Check whether the filename is to be opened in binary mode.
    870     # Binary mode does not support 'encoding' and 'newline'.
    871     if ioargs.encoding and "b" not in ioargs.mode:
    872         # Encoding
--> 873         handle = open(
    874             handle,
    875             ioargs.mode,
    876             encoding=ioargs.encoding,
    877             errors=errors,
    878             newline="",
    879         )
    880     else:
    881         # Binary mode
    882         handle = open(handle, ioargs.mode)

FileNotFoundError: [Errno 2] No such file or directory: 'outputs/grid_probabilities.csv'

[RichardScottOZ]

subbing the North America file in gets this...

KeyError                                  Traceback (most recent call last)
File ~/miniconda3/envs/sdm/lib/python3.12/site-packages/pandas/core/indexes/base.py:3805, in Index.get_loc(self, key)
   3804 try:
-> 3805     return self._engine.get_loc(casted_key)
   3806 except KeyError as err:

File index.pyx:167, in pandas._libs.index.IndexEngine.get_loc()

File index.pyx:196, in pandas._libs.index.IndexEngine.get_loc()

File pandas/_libs/hashtable_class_helper.pxi:7081, in pandas._libs.hashtable.PyObjectHashTable.get_item()

File pandas/_libs/hashtable_class_helper.pxi:7089, in pandas._libs.hashtable.PyObjectHashTable.get_item()

KeyError: 'present_lon'

The above exception was the direct cause of the following exception:

KeyError                                  Traceback (most recent call last)
Cell In[14], line 7
      2 ylims = (13, 73)
      4 time_windows = ((60, 80), (40, 60))
      6 df_clipped = df[
----> 7     (df["present_lon"] >= xlims[0])
      8     & (df["present_lon"] <= xlims[1])
      9     & (df["present_lat"] >= ylims[0])
     10     & (df["present_lat"] <= ylims[1])
     11 ].copy()
     13 df_clipped = gpd.GeoDataFrame(
     14     df_clipped,
     15     geometry=gpd.points_from_xy(
   (...)
     19     crs=coastlines.crs,
     20 )
     21 df_clipped = gpd.clip(df_clipped, coastlines)

File ~/miniconda3/envs/sdm/lib/python3.12/site-packages/pandas/core/frame.py:4102, in DataFrame.__getitem__(self, key)
   4100 if self.columns.nlevels > 1:
   4101     return self._getitem_multilevel(key)
-> 4102 indexer = self.columns.get_loc(key)
   4103 if is_integer(indexer):
   4104     indexer = [indexer]

File ~/miniconda3/envs/sdm/lib/python3.12/site-packages/pandas/core/indexes/base.py:3812, in Index.get_loc(self, key)
   3807     if isinstance(casted_key, slice) or (
   3808         isinstance(casted_key, abc.Iterable)
   3809         and any(isinstance(x, slice) for x in casted_key)
   3810     ):
   3811         raise InvalidIndexError(key)
-> 3812     raise KeyError(key) from err
   3813 except TypeError:
   3814     # If we have a listlike key, _check_indexing_error will raise
   3815     #  InvalidIndexError. Otherwise we fall through and re-raise
   3816     #  the TypeError.
   3817     self._check_indexing_error(key)

KeyError: 'present_lon'