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Notebook tutorial GRB light curve (REOPENED) #461

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Notebook tutorial GRB light curve (REOPENED) #461

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90 changes: 90 additions & 0 deletions docs/tutorials/light_curves/get_lctutorial_data.py
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#
import os
import subprocess
from pathlib import Path
from cosipy.util import fetch_wasabi_file
from cosipy import BinnedData
from cosipy.pipeline.task.task import cosi_bindata
#
indir=str("./")
#

def get_data (wasabipath,outpath,unzip):
if not os.path.exists(outpath) and not os.path.exists(outpath[:-3]):
print ("Downloading")
print (wasabipath)
fetch_wasabi_file(wasabipath,output=outpath)
if unzip==True:
if outpath[-2:] == 'gz':
print("Gunzipping")
subprocess.run(["gunzip", outpath])
elif outpath[-3:] == 'zip':
print("Unzipping")
subprocess.run(["unzip", outpath])
return()


#
#Get Response from the develop folder in wasabi (new version)
#
filename='ResponseContinuum.o3.e100_10000.b10log.s10396905069491.m2284.filtered.nonsparse.binnedimaging.imagingresponse.h5'
wasabipath=os.path.join('COSI-SMEX/develop/Data/Responses',filename)
outpath=os.path.join(indir,filename)
get_data(wasabipath,outpath,False)

#
#Get Orientation files
#
filename="DC3_final_530km_3_month_with_slew_1sbins_GalacticEarth_SAA.ori"
wasabipath=os.path.join('COSI-SMEX/DC3/Data/Orientation',filename)
outpath=os.path.join(indir,filename)
get_data(wasabipath,outpath,False)



#
#Get Galactic background
#
filename='GalTotal_SA100_F98_3months_unbinned_data_filtered_with_SAAcut.fits.gz'
wasabipath=os.path.join('COSI-SMEX/DC3/Data/Backgrounds/Ge',filename)
outpath=os.path.join(indir,filename)
get_data(wasabipath,outpath,True)


#
#Get GRB source data
#
wasabirootpath="COSI-SMEX/DC3/Data/Sources"
#
#GRB
#
filename="GRB_bn081207680_3months_unbinned_data_filtered_with_SAAcut.fits.gz"
wasabipath=os.path.join(wasabirootpath,filename)
outpath=os.path.join(indir,filename)
get_data(wasabipath,outpath,True)
#
#Bin GRB data using the app cosi-bindata
#
args=['--config','prep_lctutorial_data.yaml', '--overwrite','--config_group','bindata_grb','--suffix','grbdc3']
cosi_bindata (argv=args)
#
#Bin and cut in time the bk data
#
args=['--config','prep_lctutorial_data.yaml', '--overwrite','--config_group','bindata_bk','--suffix','galbk']
cosi_bindata (argv=args)
#
#==================================
#
#Combine grb and galactic background, to have a dataset for the fit
#
grb=BinnedData("bin_grbdc3.yaml")
#
grb_bk=os.path.join (indir,"galbk_grbdc3")
#
grb.combine_unbinned_data(["GRB_bn081207680_3months_unbinned_data_filtered_with_SAAcut.fits","GalTotal_SA100_F98_3months_unbinned_data_filtered_with_SAAcut.fits"], output_name=grb_bk)
subprocess.run(["gunzip", "galbk_grbdc3.fits.gz"])
#
#Bin the grb+bk file:
#
args=['--config','prep_lctutorial_data.yaml', '--overwrite','--config_group','bindata_grbbk','--suffix','galbk_grbdc3']
cosi_bindata(argv=args)
37 changes: 37 additions & 0 deletions docs/tutorials/light_curves/prep_lctutorial_data.yaml
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bindata_grb:
response:
class: ExpectationInterfaceTBD
args:
- ResponseContinuum.o3.e100_10000.b10log.s10396905069491.m2284.filtered.nonsparse.binnedimaging.imagingresponse.h5
unbinned_data_file: GRB_bn081207680_3months_unbinned_data_filtered_with_SAAcut.fits
sc_file: DC3_final_530km_3_month_with_slew_1sbins_GalacticEarth_SAA.ori
dt: 1
tmin: 1836496300.0
tmax: 1836496388.1
coo_sys: "local"


bindata_bk:
response:
class: ExpectationInterfaceTBD
args:
- ResponseContinuum.o3.e100_10000.b10log.s10396905069491.m2284.filtered.nonsparse.binnedimaging.imagingresponse.h5
unbinned_data_file: GalTotal_SA100_F98_3months_unbinned_data_filtered_with_SAAcut.fits
sc_file: DC3_final_530km_3_month_with_slew_1sbins_GalacticEarth_SAA.ori
dt: 1
tmin: 1836496200.0
tmax: 1836496488.1
coo_sys: "local"

bindata_grbbk:
response:
class: ExpectationInterfaceTBD
args:
- ResponseContinuum.o3.e100_10000.b10log.s10396905069491.m2284.filtered.nonsparse.binnedimaging.imagingresponse.h5
unbinned_data_file: galbk_grbdc3.fits
sc_file: DC3_final_530km_3_month_with_slew_1sbins_GalacticEarth_SAA.ori
dt: 1
tmin: 1836496300.0
tmax: 1836496388.1
coo_sys: "local"

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