diff --git a/gatk/MuTect2.wdl b/gatk/MuTect2.wdl index bd0f042..00d9374 100644 --- a/gatk/MuTect2.wdl +++ b/gatk/MuTect2.wdl @@ -68,6 +68,7 @@ task MuTect2 { output { File vcf_file = "~{output_vcf_name}" File vcf_idx_file = "~{output_vcf_name}" + ".idx" + File mutect2_stats_file = "~{output_vcf_name}" + ".stats" File f1r2_counts_tarball = "~{output_f1r2_name}" }