From 629c3e129859eca5a462784e0df0042b067ee6f6 Mon Sep 17 00:00:00 2001
From: cellgeni <cellgeni@sanger.ac.uk>
Date: Tue, 21 Jan 2025 13:37:14 +0000
Subject: [PATCH] Updated subset tesitng

---
 tests/test_metadata.sh | 9 +++++++++
 1 file changed, 9 insertions(+)

diff --git a/tests/test_metadata.sh b/tests/test_metadata.sh
index e42327a..1ea64e2 100644
--- a/tests/test_metadata.sh
+++ b/tests/test_metadata.sh
@@ -13,6 +13,15 @@ OUTPUT_DIR="${GITHUB_WORKSPACE}/output/$SERIES"
 # Create output directory and copy all scripts
 mkdir -p $OUTPUT_DIR
 cp ./scripts/* $OUTPUT_DIR
+
+# Copy subset file if provided
+if [[ $SAMPLE_LIST ]]
+then
+  cp $SAMPLE_LIST $OUTPUT_DIR
+  SAMPLE_LIST=$(basename $SAMPLE_LIST)
+fi
+
+# Move to the output directory
 cd $OUTPUT_DIR
 
 # Load metadata