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dashboard: preserve discovered package state in Group Settings #5945

Description

@marcus555

Problem

Group Settings treats the configured module list as the complete monorepo inventory. Packages discovered by the workspace detector disappear when they are not selected, so the UI cannot represent selected and unselected package state together.

Repositories can also appear unindexed when graph-stats.json is missing or unusable even though a valid graph.fb exists.

Expected behavior

  • Return the complete detected package inventory.
  • Mark only configured modules as indexed.
  • Fall back to persisted graph metadata when the optional statistics sidecar is unavailable.

A proposed fix is available in #5939.

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