Merge pull request #33 from brooksandrew/nx2.0

Updating to networkx 2.0

Author: brooksandrew

postman_problems/graph.py

@@ -51,7 +51,7 @@ def create_networkx_graph_from_edgelist(edgelist, edge_id='id'):
         edge_attr_dict = row[1][2:].to_dict()
         if edge_id not in edge_attr_dict:
             edge_attr_dict[edge_id] = i
-        g.add_edge(row[1][0], row[1][1], attr_dict=edge_attr_dict)
+        g.add_edge(row[1][0], row[1][1], **edge_attr_dict)
     return g
 
 
@@ -66,7 +66,7 @@ def _get_even_or_odd_nodes(graph, mod):
         list[str]: list of node names of odd or even degree
     """
     degree_nodes = []
-    for v, d in graph.degree_iter():
+    for v, d in graph.degree():
         if d % 2 == mod:
             degree_nodes.append(v)
     return degree_nodes
@@ -132,7 +132,7 @@ def create_complete_graph(pair_weights, flip_weights=True):
     g = nx.Graph()
     for k, v in pair_weights.items():
         wt_i = -v if flip_weights else v
-        g.add_edge(k[0], k[1], attr_dict={'distance': v, 'weight': wt_i})
+        g.add_edge(k[0], k[1], **{'distance': v, 'weight': wt_i})
     return g
 
 
@@ -169,8 +169,8 @@ def add_augmenting_path_to_graph(graph, min_weight_pairs, edge_weight_name='weig
     for pair in min_weight_pairs:
         graph_aug.add_edge(pair[0],
                            pair[1],
-                           attr_dict={'distance': nx.dijkstra_path_length(graph, pair[0], pair[1], weight=edge_weight_name),
-                                      'augmented': True}
+                           **{'distance': nx.dijkstra_path_length(graph, pair[0], pair[1], weight=edge_weight_name),
+                              'augmented': True}
                            )
     return graph_aug
 
@@ -194,7 +194,7 @@ def create_eulerian_circuit(graph_augmented, graph_original, start_node=None):
 
     euler_circuit = list(nx.eulerian_circuit(graph_augmented, source=start_node))
     assert len(graph_augmented.edges()) == len(euler_circuit), 'graph and euler_circuit do not have equal number of edges.'
-    edge_data = graph_augmented.edges(data=True)
+    edge_data = list(graph_augmented.edges(data=True))
 
     for edge in euler_circuit:
         possible_edges = [e for e in edge_data if set([e[0], e[1]]) == set([edge[0], edge[1]])]
@@ -215,6 +215,7 @@ def create_eulerian_circuit(graph_augmented, graph_original, start_node=None):
                 yield(edge_aug + (edge_aug_shortest,))
         else:
             yield(edge + (possible_edges[edge_key][2],))
+
         edge_data.remove(possible_edges[edge_key])
 
 

postman_problems/tests/test_example_sleeping_giant.py

@@ -58,10 +58,10 @@ def test_add_node_attributes():
         assert 'Y' in v
 
     # spot check node attributes for first node
-    print(graph_node_attrs.nodes(data=True)[0][0])
-    assert graph_node_attrs.nodes(data=True)[0][0] == 'rs_end_north'
-    assert graph_node_attrs.nodes(data=True)[0][1]['X'] == 1772
-    assert graph_node_attrs.nodes(data=True)[0][1]['Y'] == 172
+    node_data_from_graph = list(graph_node_attrs.nodes(data=True))
+    assert node_data_from_graph[0][0] == 'rs_end_north'
+    assert node_data_from_graph[0][1]['X'] == 1772
+    assert node_data_from_graph[0][1]['Y'] == 172
 
 
 def test_get_shortest_paths_distances():

postman_problems/viz.py

@@ -3,6 +3,7 @@
 import imageio
 import tqdm
 import numpy as np
+import networkx as nx
 import graphviz as gv
 from collections import defaultdict
 
@@ -22,7 +23,7 @@ def add_node_attributes(graph, nodelist):
         networkx graph: original `graph` augmented w node attributes
     """
     for i, row in nodelist.iterrows():
-        graph.node[row['id']] = row.to_dict()
+        nx.set_node_attributes(graph, {row['id']: row.to_dict()})
     return graph
 
 

setup.py

@@ -47,7 +47,7 @@ def read(fname):
     python_requires='>=2.7',
     install_requires=[
         'pandas',
-        'networkx==1.11'
+        'networkx>=2.0'
     ],
     extras_require={
         'viz': ['imageio', 'matplotlib', 'graphviz', 'tqdm'],