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fix pins
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pyproject.toml

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Original file line numberDiff line numberDiff line change
@@ -3,17 +3,17 @@ name = "seqr-loading-pipeline"
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dynamic = ['version']
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requires-python = ">=3.11"
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dependencies = [
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"hail==0.2.136",
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"hail==0.2.136", # NB: when upgrading hail, manually verify the below jupyter pins
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"luigi==3.5.2",
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"gnomad==0.8.0",
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"aiofiles==24.1.0",
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"pydantic==2.8.2",
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"clickhouse-driver==0.2.9",
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"slacker==0.14.0",
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"ipywidgets==8.0.6", # matches pinned version in hail init_notebook.py
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"ipykernel==6.22.0", # matches pinned version in hail init_notebook.py
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"notebook==6.5.6", # matches pinned version in hail init_notebook.py
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"nbconvert==7.3.1", # matches pinned version in hail init_notebook.py
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"ipywidgets==8.1.7", # matches pinned version in hail init_notebook.py
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"ipykernel==6.29.2", # matches pinned version in hail init_notebook.py
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"notebook==6.5.7", # matches pinned version in hail init_notebook.py
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"nbconvert==7.13.1", # matches pinned version in hail init_notebook.py
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# Git/URL installs (PEP 508 direct references)
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"gnomad-qc @ git+https://github.com/broadinstitute/[email protected]",
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"onnxconverter-common @ git+https://github.com/microsoft/onnxconverter-common.git@f7a8eb699caa6f6a78d3bdfbcaf5dfbd43569ebd",

uv.lock

Lines changed: 17 additions & 17 deletions
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