From 90d000f300861456efced025fb1d0dc44df26ae9 Mon Sep 17 00:00:00 2001 From: ch-kr Date: Thu, 23 Oct 2025 09:58:25 -0400 Subject: [PATCH 1/3] add v5 to DOWNSAMPLINGS constant --- gnomad/resources/grch38/gnomad.py | 8 ++++++++ 1 file changed, 8 insertions(+) diff --git a/gnomad/resources/grch38/gnomad.py b/gnomad/resources/grch38/gnomad.py index 8bbd2a98c..23ed85e48 100644 --- a/gnomad/resources/grch38/gnomad.py +++ b/gnomad/resources/grch38/gnomad.py @@ -308,6 +308,14 @@ 200000, 500000, ], + # Need to update these with final counts. + "v5": [ + 10000, + 62145, + 67336, + 100000, + 199794, + ], } """ List of the downsampling numbers to use for frequency calculations by version. From 954892f181a5eb3c565553dd411bae7f5947818b Mon Sep 17 00:00:00 2001 From: ch-kr Date: Fri, 7 Nov 2025 10:16:28 -0500 Subject: [PATCH 2/3] update v5 downsamplings with current meta counts --- gnomad/resources/grch38/gnomad.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnomad/resources/grch38/gnomad.py b/gnomad/resources/grch38/gnomad.py index 23ed85e48..a074bf0f8 100644 --- a/gnomad/resources/grch38/gnomad.py +++ b/gnomad/resources/grch38/gnomad.py @@ -311,10 +311,10 @@ # Need to update these with final counts. "v5": [ 10000, - 62145, - 67336, + 51698, + 68269, 100000, - 199794, + 189824, ], } """ From 2f2f6fbcfb2441ef9dbec2a00d7c88f87de6df0d Mon Sep 17 00:00:00 2001 From: ch-kr Date: Mon, 8 Dec 2025 16:30:18 -0500 Subject: [PATCH 3/3] update v5 downsampling numbers --- gnomad/resources/grch38/gnomad.py | 7 +++---- 1 file changed, 3 insertions(+), 4 deletions(-) diff --git a/gnomad/resources/grch38/gnomad.py b/gnomad/resources/grch38/gnomad.py index a074bf0f8..bfa3e1c99 100644 --- a/gnomad/resources/grch38/gnomad.py +++ b/gnomad/resources/grch38/gnomad.py @@ -308,13 +308,12 @@ 200000, 500000, ], - # Need to update these with final counts. "v5": [ 10000, - 51698, - 68269, + 59355, + 89074, 100000, - 189824, + 223733, ], } """