diff --git a/gdctools/GDCtool.py b/gdctools/GDCtool.py index fe9aa9c..ff27fbb 100644 --- a/gdctools/GDCtool.py +++ b/gdctools/GDCtool.py @@ -57,23 +57,46 @@ def execute(self): self.config_customize() self.config_finalize() + #TODO perhaps refactor for better encapsulation, moving part to + # GDCtool.config_initialize() and part to gdc_mirror.config_customize(). + # Though it is nice to have all the logic for setting datestamp in one place. + #TODO variable renaming - datestamp_required and datestamp, to make them reflect current usage + datestamp = self.options.datestamp if self.datestamp_required: - datestamp = self.options.datestamp - if not datestamp: - datestamp = 'latest' + #non-gdc_mirror case existing_dates = self.datestamps() # ascending sort order if len(existing_dates) == 0: raise ValueError("No datestamps found, use upstream tool first") + if not datestamp: + #default value = 'latest' + datestamp = 'latest' + if datestamp == 'latest': - datestamp = existing_dates[-1] + # find last datestamp in existing_dates that is in date format + for d in reversed(existing_dates): + if common.DATESTAMP_REGEX.match(d) is not None: + datestamp = d + break + else: + #TODO make this error message more helpful + raise ValueError("Looking for latest datestamp, but no datestamps found in correct format") elif datestamp not in existing_dates: raise ValueError("Requested datestamp not present in " + self.config.datestamps + "\n" + "Existing datestamps: " + repr(existing_dates)) else: - datestamp = time.strftime('%Y_%m_%d', time.localtime()) + #gdc_mirror case + if not datestamp: + # default value = today's datestamp + datestamp = common.datestamp() + elif datestamp == 'pool': + pass + else: + #other strings such as , 'latest', valid variable names, and everything else are not allowed + raise ValueError("For gdc_mirror, date must be blank or 'pool'") + self.datestamp = datestamp self.init_logging() @@ -98,12 +121,12 @@ def config_add_args(self): cli = self.cli cli.add_argument('--config', nargs='+', type=argparse.FileType('r'), help='One or more configuration files') - - if self.datestamp_required: - cli.add_argument('--date', nargs='?', dest='datestamp', - help='Use data from a given dated version (snapshot) of ' - 'GDC data, specified in YYYY_MM_DD form. If omitted, ' - 'the latest available snapshot will be used.') + cli.add_argument('--date', nargs='?', dest='datestamp', + help='Use data from a given dated version (snapshot) of ' + 'GDC data. The special value "pool" can be used for date ' + 'agnostic snapshots, typically along with "--append". ' + 'For tools other than gdc_mirror, you can give a date in YYYY_MM_DD form.' + 'If omitted, the latest available snapshot will be used.') cli.add_argument('--cases', nargs='+', metavar='case_id', help='Process data only from these GDC cases') cli.add_argument('--categories',nargs='+',metavar='category', diff --git a/gdctools/gdc_dice.py b/gdctools/gdc_dice.py index e663aeb..6899795 100644 --- a/gdctools/gdc_dice.py +++ b/gdctools/gdc_dice.py @@ -81,6 +81,7 @@ def dice(self): program = config.programs[0] diced_prog_root = os.path.join(config.dice.dir, program) mirror_prog_root = os.path.join(config.mirror.dir, program) + prog_status_tally = Counter() # Ensure no simultaneous mirroring/dicing with common.lock_context(diced_prog_root, "dice"), \ @@ -150,9 +151,10 @@ def dice(self): if not os.path.isdir(diced_meta_dir): os.makedirs(diced_meta_dir) diced_meta_file = os.path.join(diced_meta_dir, diced_meta_fname) + diced_meta_file_partial = diced_meta_file + '.partial' # Count project annotations - with open(diced_meta_file, 'w') as mf: + with open(diced_meta_file_partial, 'w') as mf: # Header META_HEADERS = ['case_id', 'tcga_barcode', 'sample_type', 'annotation', 'file_name', 'center', @@ -164,17 +166,23 @@ def dice(self): for tcga_id in tcga_lookup: # Dice single sample files first for file_d in viewvalues(tcga_lookup[tcga_id]): - dice_one(file_d, trans_dict, raw_project_root, + dice_one_status = dice_one(file_d, trans_dict, raw_project_root, diced_project_root, mfw, dry_run=self.options.dry_run, force=self.force) + prog_status_tally[dice_one_status] += 1 #Then dice the multi_sample_files for file_d in multi_sample_files: - dice_one(file_d, trans_dict, raw_project_root, + dice_one_status = dice_one(file_d, trans_dict, raw_project_root, diced_project_root, mfw, dry_run=self.options.dry_run, force=self.force) + prog_status_tally[dice_one_status] += 1 + + # move completed metadata file to final location + # note it may include diced files that had errors + os.rename(diced_meta_file_partial, diced_meta_file) # Bookkeeping code -- write some useful tables # and figures needed for downstream sample reports. @@ -217,7 +225,13 @@ def dice(self): _write_combined_counts(all_counts_file, all_counts, all_totals) _link_to_prog(all_counts_file, datestamp, diced_prog_root) - logging.info("Dicing completed successfuly") + logging.info(str(prog_status_tally)) + if prog_status_tally['error'] == 0: + logging.info("Dicing completed successfuly") + else: + logging.error("One or more diced files FAILED") + raise Exception("One or more diced files FAILED") + def execute(self): super(gdc_dice, self).execute() @@ -361,10 +375,11 @@ def dice_one(file_dict, translation_dict, mirror_proj_root, diced_root, true, a debug message will be displayed instead of performing the actual dicing operation. """ + dice_one_status = 'error' mirror_path = meta.mirror_path(mirror_proj_root, file_dict) if not os.path.isfile(mirror_path): # Bad, this means there are integrity issues - raise ValueError("Expected mirror file missing: " + mirror_path) + logging.warning("Expected mirror file missing: " + mirror_path) else: ## Get the right annotation and converter for this file annot, convert = get_annotation_converter(file_dict, translation_dict) @@ -380,32 +395,49 @@ def dice_one(file_dict, translation_dict, mirror_proj_root, diced_root, already_diced = all(os.path.isfile(p) for p in expected_paths) if force or not already_diced: logging.info("Dicing file " + mirror_path) - convert(file_dict, mirror_path, dice_path) + try: + convert(file_dict, mirror_path, dice_path) + dice_one_status = 'pass' + except Exception as e: + logging.warning('Dice converter failed: %s'%str(e)) else: logging.info("Skipping file " + mirror_path + " (already diced)") + dice_one_status = 'cached' - append_diced_metadata(file_dict, expected_paths, + duplicate_detected = append_diced_metadata(file_dict, expected_paths, annot, meta_file_writer) - else: - # To verbose to log the entire json, log just log data_type and file_id - warning_info = { - 'data_type' : file_dict["data_type"], - 'data_category' : file_dict["data_category"], - 'file_id' : file_dict["file_id"], - 'file_name': file_dict['file_name'] - } - logging.warn('Unrecognized data:\n%s' % json.dumps(warning_info, - indent=2)) + if duplicate_detected: + dice_one_status = 'error' + else: + dice_one_status = 'dry_run' + + return dice_one_status def get_annotation_converter(file_dict, translation_dict): - k = metadata_to_key(file_dict) + dictkey = metadata_to_dictkey(file_dict) + k = frozenset(dictkey.items()) if k in translation_dict: return translation_dict[k] else: - # FIXME: Gracefully handle this instead of creating a new annotation type + warning_info = \ +""" + file_id: {0} + file_name: {1} + + data_category: {data_category} + data_type: {data_type} + experimental_strategy: {experimental_strategy} + platform: {platform} + center_namespace: {center_namespace} + tags: {tags} + workflow_type: {workflow_type} +""".format(file_dict["file_id"], file_dict['file_name'], **dictkey) + + logging.warn('Unrecognized data:\n%s' % warning_info) + return "UNRECOGNIZED", None -def metadata_to_key(file_dict): +def metadata_to_dictkey(file_dict): """Converts the file metadata in file_dict into a key in the TRANSLATION_DICT""" # Required fields data_type = file_dict.get("data_type", '') @@ -416,7 +448,7 @@ def metadata_to_key(file_dict): center_namespace = file_dict['center']['namespace'] if 'center' in file_dict else '' workflow_type = file_dict['analysis']['workflow_type'] if 'analysis' in file_dict else '' - return frozenset({ + return { "data_type" : data_type, "data_category" : data_category, "experimental_strategy" : experimental_strategy, @@ -424,7 +456,10 @@ def metadata_to_key(file_dict): "tags" : tags, "center_namespace" : center_namespace, "workflow_type" : workflow_type - }.items()) + } + +# globally scoped variable, for persistence +count_by_tcga_barcode_by_annot = defaultdict(Counter) def append_diced_metadata(file_dict, diced_paths, annot, meta_file_writer): '''Write one or more rows for the given file_dict using meta_file_writer. @@ -433,7 +468,8 @@ def append_diced_metadata(file_dict, diced_paths, annot, meta_file_writer): meta_file_writer must be a csv.DictWriter ''' - + + duplicate_detected = False # These fields will be shared regardless of the number of diced files rowdict = { 'annotation' : annot, @@ -448,17 +484,24 @@ def append_diced_metadata(file_dict, diced_paths, annot, meta_file_writer): sample_type = None if meta.has_sample(file_dict): sample_type = meta.sample_type(file_dict) + tcga_barcode = meta.tcga_id(file_dict) + # Write row with csv.DictWriter.writerow() rowdict.update({ 'case_id' : meta.case_id(file_dict), - 'tcga_barcode' : meta.tcga_id(file_dict), + 'tcga_barcode' : tcga_barcode, 'sample_type' : sample_type, 'file_name' : diced_path, 'is_ffpe' : meta.is_ffpe(file_dict) }) - meta_file_writer.writerow(rowdict) + + count_by_tcga_barcode_by_annot[tcga_barcode][annot] += 1 + if count_by_tcga_barcode_by_annot[tcga_barcode][annot] > 1: + duplicate_detected = True + logging.error('Multiple files contain data for the same sample: %s'%str(rowdict) ) + else: # Harder case, have to write a line for each unique file # We need to match the diced filenames back to the original samples @@ -484,6 +527,14 @@ def append_diced_metadata(file_dict, diced_paths, annot, meta_file_writer): }) meta_file_writer.writerow(rowdict) + count_by_tcga_barcode_by_annot[tcga_barcode][annot] += 1 + if count_by_tcga_barcode_by_annot[tcga_barcode][annot] > 1: + duplicate_detected = True + logging.error('Multiple files contain data for the same sample: %s'%str(rowdict) ) + + + return duplicate_detected + def constrain(metadata, config): cases_chosen = set(config.cases) categories_chosen = config.categories diff --git a/gdctools/gdc_mirror.py b/gdctools/gdc_mirror.py index ea4c6b1..6fee8d8 100644 --- a/gdctools/gdc_mirror.py +++ b/gdctools/gdc_mirror.py @@ -19,6 +19,7 @@ import logging import time import json +import collections from gdctools.GDCcore import * from gdctools.GDCtool import GDCtool @@ -39,12 +40,17 @@ def __init__(self): cli = self.cli cli.add_argument('-m', '--mirror-dir', help='Root of mirrored data folder tree') - cli.add_argument('-l', '--legacy', default=False, action='store_true', + cli.add_argument('-l', '--legacy', action='store_true', help='Retrieve legacy data (e.g. TCGA HG19), instead of ' 'data harmonized at the GDC (the default)') cli.add_argument('-f', '--force-download', action='store_true', help='Download files even if already mirrored locally.'+ ' (DO NOT use during incremental mirroring)') + cli.add_argument('--append', action='store_true', + help='Specify this if you want downstream tools like ' + 'gdc_dice and gdc_loadfile to also apply to data ' + 'downloaded in the previous mirrorring of the data ' + 'at this datestamp, in addition to the current mirroring. ') # Detect if we have curl installed self.has_cURL = api.curl_exists() @@ -75,8 +81,20 @@ def config_customize(self): # ONLY supports MIRRORING of legacy, nothing else api.set_legacy(config.mirror.legacy) + + # Check for append in config file, then allow commandline to override it + if config.mirror.append: + # Append mode has been requested in config file, coerce to boolean + # TODO also validate legal false values + value = config.mirror.append.lower() + config.mirror.append = (value in ["1", "true", "on", "yes"]) + if opts.append: + config.mirror.append = opts.append + + def mirror(self): + config = self.config if not os.path.isdir(config.mirror.dir): os.makedirs(config.mirror.dir) @@ -128,17 +146,25 @@ def mirror(self): program_projects[prgm].append(project) # Now loop over each program, acquiring lock + prgm_status_tally = collections.Counter() for prgm in program_projects: projects = program_projects[prgm] prgm_root = os.path.abspath(os.path.join(config.mirror.dir, prgm)) with common.lock_context(prgm_root, "mirror"): for project in sorted(projects): - self.mirror_project(prgm, project) + proj_status_tally = self.mirror_project(prgm, project) + prgm_status_tally.update(proj_status_tally) # Update the datestamps file with this version of the mirror self.update_datestamps_file() - logging.info("Mirror completed successfully.") + logging.info(str(prgm_status_tally)) + if prgm_status_tally['error'] == 0: + logging.info("Mirror completed successfully.") + else: + logging.error("Mirror FAILED downloading one or more files.") + raise Exception("Mirror FAILED downloading one or more files.") + def __mirror_file(self, file_d, proj_root, n, total, retries=3): '''Mirror a file into //. @@ -147,6 +173,7 @@ def __mirror_file(self, file_d, proj_root, n, total, retries=3): ''' strict = not self.config.mirror.legacy savepath = meta.mirror_path(proj_root, file_d, strict=strict) + partialsavepath = savepath + '.partial' dirname, basename = os.path.split(savepath) logging.info("Mirroring file {0} | {1} of {2}".format(basename, n, total)) @@ -155,7 +182,7 @@ def __mirror_file(self, file_d, proj_root, n, total, retries=3): os.makedirs(dirname) md5path = savepath + ".md5" - + file_status = 'cached' # Download if force is enabled or if the file is not on disk if (self.force_download or not meta.md5_matches(file_d, md5path, strict) or not os.path.isfile(savepath)): @@ -163,14 +190,15 @@ def __mirror_file(self, file_d, proj_root, n, total, retries=3): # New file, mirror to this folder time = 180 retry = 0 + file_status = 'error' while retry <= retries: try: #Download file uuid = file_d['file_id'] if self.has_cURL: - api.curl_download_file(uuid, savepath, max_time=time) + api.curl_download_file(uuid, partialsavepath, max_time=time) else: - api.py_download_file(uuid, savepath) + api.py_download_file(uuid, partialsavepath) break except Exception as e: logging.warning("Download failed: " + str(e) + '\nRetrying...') @@ -182,14 +210,43 @@ def __mirror_file(self, file_d, proj_root, n, total, retries=3): if retry > retries: # A partially downloaded file will interfere with subsequent # mirrors - common.silent_rm(savepath) - logging.error("Error downloading file {0}, too many retries ({1})".format(savepath, retries)) + common.silent_rm(partialsavepath) + logging.warning("Error downloading file {0}, too many retries ({1})".format(savepath, retries)) else: - #Save md5 checksum on success + #success! First remove old md5, then rename file, then write new md5 + #That way, if the process gets interrupted, future runs will be consider + # the file dirty unless each of these steps complete. md5sum = file_d['md5sum'] md5path = savepath + ".md5" + if os.path.exists(md5path): + os.remove(md5path) + os.rename(partialsavepath,savepath) with open(md5path, 'w') as mf: mf.write(md5sum + " " + basename) + file_status = 'pass' + + return file_status + + @staticmethod + def __merge_mirror_metadata(old, new): + file_item_dict = {} + if old is not None: + for file_item in old: + key = file_item['file_id'] + file_item['md5sum'] + file_item_dict[key] = file_item + + for file_item in new: + key = file_item['file_id'] + file_item['md5sum'] + # TODO should there be a check whether the rest of the metadata matches? + file_item_dict[key] = file_item + + file_item_list = [] + file_item_keys = list(file_item_dict.keys()) + file_item_keys.sort() + for key in file_item_keys: + file_item_list.append(file_item_dict[key]) + return file_item_list + def mirror_project(self, program, project): '''Mirror one project folder''' @@ -209,20 +266,24 @@ def mirror_project(self, program, project): proj_dir = os.path.join(config.mirror.dir, program, project) logging.info("Mirroring data to " + proj_dir) - # Read the previous metadata, if present - prev_datestamp = meta.latest_datestamp(proj_dir, None) - prev_metadata = [] - if prev_datestamp is not None: - prev_stamp_dir = os.path.join(proj_dir, "metadata", prev_datestamp) - prev_metadata = meta.latest_metadata(prev_stamp_dir) + # TODO remove this old code **gs** along with the prev_metadata variable + # # Read the previous metadata, if present + # prev_datestamp = meta.latest_datestamp(proj_dir, None) + # prev_metadata = [] + # if prev_datestamp is not None: + # prev_stamp_dir = os.path.join(proj_dir, "metadata", prev_datestamp) + # prev_metadata = meta.latest_metadata(prev_stamp_dir) + prev_metadata = None # Mirror each category separately, recording metadata (file dicts) file_metadata = [] + proj_status_tally = collections.Counter() for cat in sorted(categories): - cat_data = self.mirror_category(program, project, cat, + cat_data, cat_status_tally = self.mirror_category(program, project, cat, self.workflow, prev_metadata) file_metadata.extend(cat_data) + proj_status_tally.update(cat_status_tally) # Record project-level metadata # file dicts, counts, redactions, blacklist, etc. @@ -230,12 +291,26 @@ def mirror_project(self, program, project): stamp_folder = os.path.join(meta_folder, datestamp) if not os.path.isdir(stamp_folder): os.makedirs(stamp_folder) - - # Write file metadata meta_json = ".".join(["metadata", project, datestamp, "json" ]) meta_json = os.path.join(stamp_folder, meta_json) - with open(meta_json, 'w') as jf: - json.dump(file_metadata, jf, indent=2) + meta_json_partial = meta_json + '.partial' + + if config.mirror.append and os.path.exists(meta_json): + #fetch previous metadata with same datestamp + with open(meta_json) as jsonf: + old_metadata = json.load(jsonf) + else: + old_metadata = None + + output_metadata = self.__merge_mirror_metadata(old_metadata, file_metadata) + + + # Write file metadata + with open(meta_json_partial, 'w') as jf: + json.dump(output_metadata, jf, indent=2) + os.rename(meta_json_partial, meta_json) + + return proj_status_tally def mirror_category(self, program, project, category, workflow, prev_metadata): @@ -266,21 +341,17 @@ def mirror_category(self, program, project, category, [case for case in file_metadata[idx]["cases"] \ if case["submitter_id"] in cases] - new_metadata = file_metadata - # If we aren't forcing a full mirror, check the existing metadata - # to see what files are new - if not self.force_download: - new_metadata = meta.files_diff(proj_dir, file_metadata, - prev_metadata, strict) - num_files = len(new_metadata) + num_files = len(file_metadata) logging.info("{0} new {1} files".format(num_files, category)) - for n, file_d in enumerate(new_metadata): - self.__mirror_file(file_d, proj_dir, n+1, num_files) + status_tally = collections.Counter() + for n, file_d in enumerate(file_metadata): + file_status = self.__mirror_file(file_d, proj_dir, n+1, num_files) + status_tally[file_status] += 1 - return file_metadata + return file_metadata, status_tally def execute(self): super(gdc_mirror, self).execute() @@ -303,7 +374,7 @@ def update_datestamps_file(self): # Now read the file datestamps_file = open(datestamps_file, 'r+') stamps = datestamps_file.read().strip().split('\n') - if stamps[-1] != self.datestamp: + if self.datestamp not in stamps: datestamps_file.write(self.datestamp + '\n') def main(): diff --git a/gdctools/lib/annotations_table.tsv b/gdctools/lib/annotations_table.tsv index 09401eb..d4bb295 100644 --- a/gdctools/lib/annotations_table.tsv +++ b/gdctools/lib/annotations_table.tsv @@ -11,3 +11,6 @@ mRNA__geneExp__FPKM unzip_fpkm2magetab Transcriptome Profiling Gene Expression Q mRNA__geneExpNormed__FPKM unzip_fpkm2magetab Transcriptome Profiling Gene Expression Quantification RNA-Seq HTSeq - FPKM-UQ mRNA__counts__FPKM unzip_fpkm2magetab Transcriptome Profiling Gene Expression Quantification RNA-Seq HTSeq - Counts SNV__mutect maf Simple Nucleotide Variation Masked Somatic Mutation WXS MuTect2 Variant Aggregation and Masking +SNV__somaticsniper maf Simple Nucleotide Variation Masked Somatic Mutation WXS SomaticSniper Variant Aggregation and Masking +SNV__muse maf Simple Nucleotide Variation Masked Somatic Mutation WXS MuSE Variant Aggregation and Masking +SNV__varscan maf Simple Nucleotide Variation Masked Somatic Mutation WXS VarScan2 Variant Aggregation and Masking diff --git a/gdctools/lib/common.py b/gdctools/lib/common.py index 7a2e08a..5f04f25 100644 --- a/gdctools/lib/common.py +++ b/gdctools/lib/common.py @@ -31,7 +31,10 @@ 'mRNA__geneExp__FPKM' : 'mRNA', 'mRNA__geneExpNormed__FPKM' : 'mRNA', 'mRNA__counts__FPKM' : 'mRNA', - 'SNV__mutect' : 'MAF' + 'SNV__mutect' : 'MAF', + 'SNV__somaticsniper' : 'MAF', + 'SNV__muse' : 'MAF', + 'SNV__varscan' : 'MAF' } __PY3__ = sys.version_info > (3,) diff --git a/gdctools/lib/convert/copy.py b/gdctools/lib/convert/copy.py index 7111341..5faa902 100644 --- a/gdctools/lib/convert/copy.py +++ b/gdctools/lib/convert/copy.py @@ -1,13 +1,16 @@ import shutil +import os -from ..meta import tcga_id, diced_file_paths +from ..meta import tcga_id, diced_file_path, diced_file_path_partial from ..common import safeMakeDirs # Copy from mirror to dice dir def process(file_dict, mirror_path, dice_path): _tcga_id = tcga_id(file_dict) - filepath = diced_file_paths(dice_path, file_dict)[0] + filepath = diced_file_path(dice_path, file_dict) + filepath_partial = diced_file_path_partial(dice_path, file_dict) safeMakeDirs(dice_path) # copy to new name in - shutil.copy(mirror_path, filepath) + shutil.copy(mirror_path, filepath_partial) + os.rename(filepath_partial, filepath) diff --git a/gdctools/lib/convert/maf.py b/gdctools/lib/convert/maf.py index 7e7a59f..0f007f0 100644 --- a/gdctools/lib/convert/maf.py +++ b/gdctools/lib/convert/maf.py @@ -45,9 +45,11 @@ def process(file_dict, mafFile, outdir, is_compressed=True): sample_maf_filename = ".".join([sample_id, maf_uuid, "maf.txt"]) logging.info("Writing sample MAF: " + sample_maf_filename) sample_maf_filename = os.path.join(outdir, sample_maf_filename) - with safe_open(sample_maf_filename, 'w') as smf: + sample_maf_filename_partial = sample_maf_filename + '.partial' + with safe_open(sample_maf_filename_partial, 'w') as smf: outwriter = csv.writer(smf, delimiter='\t') outwriter.writerows(tcgaSampleIdToMafLinesMap[sample_id]) + os.rename(sample_maf_filename_partial,sample_maf_filename) #=============================================================================== diff --git a/gdctools/lib/convert/py_clinical.py b/gdctools/lib/convert/py_clinical.py index 84d1cfb..482bc2d 100644 --- a/gdctools/lib/convert/py_clinical.py +++ b/gdctools/lib/convert/py_clinical.py @@ -1,10 +1,13 @@ -from ..meta import diced_file_paths +from ..meta import diced_file_path, diced_file_path_partial from ..clinxml import parse_clinical_xml from ..common import safeMakeDirs +import os def process(file_dict, infile, outdir): # should only produce one file - filepath = diced_file_paths(outdir, file_dict)[0] + filepath = diced_file_path(outdir, file_dict) + filepath_partial = diced_file_path_partial(outdir, file_dict) safeMakeDirs(outdir) - parse_clinical_xml(infile, filepath) + parse_clinical_xml(infile, filepath_partial) + os.rename(filepath_partial, filepath) return filepath diff --git a/gdctools/lib/convert/seg.py b/gdctools/lib/convert/seg.py index 8c9937b..c5757b2 100644 --- a/gdctools/lib/convert/seg.py +++ b/gdctools/lib/convert/seg.py @@ -1,6 +1,7 @@ #!/usr/bin/env python import csv +import os from ..common import safeMakeDirs, writeCsvFile from .. import meta @@ -8,7 +9,8 @@ def process(file_dict, infile, outdir, dialect='seg_broad'): # Should only produce one outfile - outfile = meta.diced_file_paths(outdir, file_dict)[0] + outfile = meta.diced_file_path(outdir, file_dict) + outfile_partial = meta.diced_file_path_partial(outdir, file_dict) hyb_id = file_dict['file_name'].split('.',1)[0] tcga_id = meta.aliquot_id(file_dict) @@ -19,7 +21,8 @@ def process(file_dict, infile, outdir, dialect='seg_broad'): seg_file_data = generate_seg_file(csvfile, converter, tcga_id, hyb_id) safeMakeDirs(outdir) - writeCsvFile(outfile, seg_file_data) + writeCsvFile(outfile_partial, seg_file_data) + os.rename(outfile_partial, outfile) rawfile.close() return outfile diff --git a/gdctools/lib/convert/tsv2idtsv.py b/gdctools/lib/convert/tsv2idtsv.py index 3c9aeda..c848bf9 100644 --- a/gdctools/lib/convert/tsv2idtsv.py +++ b/gdctools/lib/convert/tsv2idtsv.py @@ -1,12 +1,14 @@ #!/usr/bin/env python import csv +import os from ..common import safeMakeDirs, map_blank_to_na, writeCsvFile -from ..meta import tcga_id, diced_file_paths +from ..meta import tcga_id, diced_file_path, diced_file_path_partial def process(file_dict, infile, outdir): # Should only produce one file - filepath = diced_file_paths(outdir, file_dict)[0] + filepath = diced_file_path(outdir, file_dict) + filepath_partial = diced_file_path_partial(outdir, file_dict) _tcga_id = tcga_id(file_dict) rawfile = open(infile, 'r') csvfile = csv.reader(rawfile, dialect='excel-tab') @@ -15,7 +17,8 @@ def process(file_dict, infile, outdir): csvfile_with_NAs = map_blank_to_na(csvfile_with_ids) safeMakeDirs(outdir) - writeCsvFile(filepath, csvfile_with_NAs) + writeCsvFile(filepath_partial, csvfile_with_NAs) + os.rename(filepath_partial, filepath) rawfile.close() diff --git a/gdctools/lib/convert/tsv2magetab.py b/gdctools/lib/convert/tsv2magetab.py index be65f32..60d36ff 100644 --- a/gdctools/lib/convert/tsv2magetab.py +++ b/gdctools/lib/convert/tsv2magetab.py @@ -2,9 +2,10 @@ import csv from os.path import basename +import os from ..common import safeMakeDirs, getTabFileHeader, map_blank_to_na, writeCsvFile, rearrange_columns -from ..meta import tcga_id, diced_file_paths +from ..meta import tcga_id, diced_file_path, diced_file_path_partial def process(file_dict, infile, outdir, fpkm=False, col_order=None, data_cols=None): @@ -19,7 +20,8 @@ def process(file_dict, infile, outdir, fpkm=False, col_order=None, data_cols=Non ''' - filepath = diced_file_paths(outdir, file_dict)[0] + filepath = diced_file_path(outdir, file_dict) + filepath_partial = diced_file_path_partial(outdir, file_dict) safeMakeDirs(outdir) _tcga_id = tcga_id(file_dict) @@ -38,7 +40,8 @@ def process(file_dict, infile, outdir, fpkm=False, col_order=None, data_cols=Non csvfile_with_new_column_order = csvfile_with_NAs safeMakeDirs(outdir) - writeCsvFile(filepath, csvfile_with_new_column_order) + writeCsvFile(filepath_partial, csvfile_with_new_column_order) + os.rename(filepath_partial, filepath) rawfile.close() diff --git a/gdctools/lib/meta.py b/gdctools/lib/meta.py index d2c622c..9cfa6c0 100644 --- a/gdctools/lib/meta.py +++ b/gdctools/lib/meta.py @@ -220,6 +220,20 @@ def mirror_path(proj_root, file_dict, strict=True): name = file_basename(file_dict, strict) return os.path.join(proj_root, category, data_type, name).replace(' ', '_') + +def diced_file_path_partial(root, file_dict): + diced_path = diced_file_path(root, file_dict) + diced_path_partial = diced_path + '.partial' + return diced_path_partial + +def diced_file_path(root, file_dict): + diced_paths = diced_file_paths(root, file_dict) + if len(diced_paths) != 1: + raise ValueError("Expected one path, found %d for %s"% + (len(diced_paths), json.dumps(file_dict, indent=2))) + diced_path = diced_paths[0] + return diced_path + def diced_file_paths(root, file_dict): '''Return the name of the diced file to be created''' _ext = dice_extension(file_dict) diff --git a/tests/Makefile b/tests/Makefile index bf3af7a..c6981ed 100644 --- a/tests/Makefile +++ b/tests/Makefile @@ -71,7 +71,7 @@ help: @echo "4. publish Submit to PyPI" @echo -test: setup test_smoke test_dice test_loadfiles test_legacy test_report echo_success +test: setup test_smoke test_dice test_loadfiles test_legacy test_report echo_success test_dice_error test_pool test_smoke: setup echo_ver test_invoke test_mirror test_redo_mirror test_badcfg \ test_cases test_choose @@ -149,6 +149,45 @@ test_dice: $(FIND_DICE_FILES) -exec $(MD5) {} \; | $(SORT) > $(TEST_ROOT)/dice-md5sums.txt diff -b baselines/dice-md5sums.txt $(TEST_ROOT)/. +test_dice_error: + @echo + @echo Test that dicing throws error when mirror is corrupted + @$(PYTHON) ../gdctools/gdc_mirror.py --config corrupt_mirror.cfg + @rm -r ./corrupt_sandbox/mirror/TCGA/TCGA-ACC/Copy_Number_Variation + @$(PYTHON) ../gdctools/gdc_dice.py --config corrupt_mirror.cfg || Result=$$? ; \ + $(ENSURE_FAILURE_EXIT_CODE) + @echo + @echo Test that error goes away when mirror is fixed + @$(PYTHON) ../gdctools/gdc_mirror.py --config corrupt_mirror.cfg + @$(PYTHON) ../gdctools/gdc_dice.py --config corrupt_mirror.cfg + +test_pool: + @echo + @echo Test that mirror metadata is appended only when --append flag present + @rm -rf ./pool_sandbox + @$(PYTHON) ../gdctools/gdc_mirror.py --config pool1.cfg + @$(PYTHON) ../gdctools/gdc_dice.py --config pool.cfg 2>&1 | grep Counter | grep '10}' + + @$(PYTHON) ../gdctools/gdc_mirror.py --config pool2.cfg + @$(PYTHON) ../gdctools/gdc_dice.py --config pool.cfg 2>&1 | grep Counter | grep '16}' + + @$(PYTHON) ../gdctools/gdc_mirror.py --config pool2.cfg --append + @$(PYTHON) ../gdctools/gdc_dice.py --config pool.cfg 2>&1 | grep Counter | grep '16}' + + @$(PYTHON) ../gdctools/gdc_mirror.py --config pool1.cfg --append + @$(PYTHON) ../gdctools/gdc_dice.py --config pool.cfg 2>&1 | grep Counter | grep '22}' + + @$(PYTHON) ../gdctools/gdc_mirror.py --config pool1.cfg + @$(PYTHON) ../gdctools/gdc_dice.py --config pool.cfg 2>&1 | grep Counter | grep '10}' + + @$(PYTHON) ../gdctools/gdc_mirror.py --config pool2.cfg --date pool --append + @$(PYTHON) ../gdctools/gdc_dice.py --config pool.cfg 2>&1 | grep Counter | grep '10}' + @$(PYTHON) ../gdctools/gdc_dice.py --config pool.cfg --date pool 2>&1 | grep Counter | grep '16}' + + @$(PYTHON) ../gdctools/gdc_mirror.py --config pool1.cfg --date pool --append + @$(PYTHON) ../gdctools/gdc_dice.py --config pool.cfg 2>&1 | grep Counter | grep '10}' + @$(PYTHON) ../gdctools/gdc_dice.py --config pool.cfg --date pool 2>&1 | grep Counter | grep '22}' + test_loadfiles: # By default GDCtools generates firecloud-style loadfiles, so exercise other @$(EMAKE) test_loadfile @@ -239,4 +278,4 @@ clean: rm -rf build dist *.egg-info *~ test_*.log bad.cfg rclean: clean - \rm -rf sandbox GDCtool gdctools_tmp onlycases legacy + \rm -rf *sandbox GDCtool gdctools_tmp onlycases legacy diff --git a/tests/baselines/TCGA.filtered_samples.txt b/tests/baselines/TCGA.filtered_samples.txt index 317427e..9d275cc 100644 --- a/tests/baselines/TCGA.filtered_samples.txt +++ b/tests/baselines/TCGA.filtered_samples.txt @@ -3,14 +3,20 @@ TCGA-BL-A0C8 TCGA-BLCA CNV__snp6 Analyte Replicate Filter TCGA-BL-A0C8-10A-01D-A TCGA-BL-A0C8 TCGA-BLCA CNV__unfiltered__snp6 Analyte Replicate Filter TCGA-BL-A0C8-10A-01D-A10T-01 TCGA-BL-A0C8-10A-01D-A273-01 TCGA-BL-A0C8 TCGA-BLCA CNV__snp6 Analyte Replicate Filter TCGA-BL-A0C8-01A-11D-A10T-01 TCGA-BL-A0C8-01A-11D-A273-01 TCGA-BL-A0C8 TCGA-BLCA CNV__unfiltered__snp6 Analyte Replicate Filter TCGA-BL-A0C8-01A-11D-A10T-01 TCGA-BL-A0C8-01A-11D-A273-01 +TCGA-BL-A0C8 TCGA-BLCA SNV__muse Analyte Replicate Filter TCGA-BL-A0C8-01A-11D-A10S-08 TCGA-BL-A0C8-01A-11D-A271-08 TCGA-BL-A0C8 TCGA-BLCA SNV__mutect Analyte Replicate Filter TCGA-BL-A0C8-01A-11D-A10S-08 TCGA-BL-A0C8-01A-11D-A271-08 +TCGA-BL-A0C8 TCGA-BLCA SNV__somaticsniper Analyte Replicate Filter TCGA-BL-A0C8-01A-11D-A10S-08 TCGA-BL-A0C8-01A-11D-A271-08 +TCGA-BL-A0C8 TCGA-BLCA SNV__varscan Analyte Replicate Filter TCGA-BL-A0C8-01A-11D-A10S-08 TCGA-BL-A0C8-01A-11D-A271-08 TCGA-BL-A0C8 TCGA-BLCA mRNA__counts__FPKM Analyte Replicate Filter TCGA-BL-A0C8-01A-11R-A10U-07 TCGA-BL-A0C8-01A-11R-A277-07 TCGA-BL-A0C8 TCGA-BLCA mRNA__geneExpNormed__FPKM Analyte Replicate Filter TCGA-BL-A0C8-01A-11R-A10U-07 TCGA-BL-A0C8-01A-11R-A277-07 TCGA-BL-A0C8 TCGA-BLCA mRNA__geneExp__FPKM Analyte Replicate Filter TCGA-BL-A0C8-01A-11R-A10U-07 TCGA-BL-A0C8-01A-11R-A277-07 TCGA-BL-A0C8 TCGA-BLCA methylation__HM450 Analyte Replicate Filter TCGA-BL-A0C8-01A-11D-A10W-05 TCGA-BL-A0C8-01A-11D-A276-05 TCGA-BL-A0C8 TCGA-BLCA miR__geneExp Analyte Replicate Filter TCGA-BL-A0C8-01A-11R-A10V-13 TCGA-BL-A0C8-01A-11R-A27D-13 TCGA-BL-A0C8 TCGA-BLCA miR__isoformExp Analyte Replicate Filter TCGA-BL-A0C8-01A-11R-A10V-13 TCGA-BL-A0C8-01A-11R-A27D-13 +TCGA-BL-A13I TCGA-BLCA SNV__muse Analyte Replicate Filter TCGA-BL-A13I-01A-11D-A13W-08 TCGA-BL-A13I-01A-11D-A271-08 TCGA-BL-A13I TCGA-BLCA SNV__mutect Analyte Replicate Filter TCGA-BL-A13I-01A-11D-A13W-08 TCGA-BL-A13I-01A-11D-A271-08 +TCGA-BL-A13I TCGA-BLCA SNV__somaticsniper Analyte Replicate Filter TCGA-BL-A13I-01A-11D-A13W-08 TCGA-BL-A13I-01A-11D-A271-08 +TCGA-BL-A13I TCGA-BLCA SNV__varscan Analyte Replicate Filter TCGA-BL-A13I-01A-11D-A13W-08 TCGA-BL-A13I-01A-11D-A271-08 TCGA-BL-A13I TCGA-BLCA mRNA__counts__FPKM Analyte Replicate Filter TCGA-BL-A13I-01A-11R-A13Y-07 TCGA-BL-A13I-01A-11R-A277-07 TCGA-BL-A13I TCGA-BLCA mRNA__geneExpNormed__FPKM Analyte Replicate Filter TCGA-BL-A13I-01A-11R-A13Y-07 TCGA-BL-A13I-01A-11R-A277-07 TCGA-BL-A13I TCGA-BLCA mRNA__geneExp__FPKM Analyte Replicate Filter TCGA-BL-A13I-01A-11R-A13Y-07 TCGA-BL-A13I-01A-11R-A277-07 @@ -21,7 +27,10 @@ TCGA-BL-A13J TCGA-BLCA CNV__snp6 Analyte Replicate Filter TCGA-BL-A13J-10A-01D-A TCGA-BL-A13J TCGA-BLCA CNV__unfiltered__snp6 Analyte Replicate Filter TCGA-BL-A13J-10A-01D-A10T-01 TCGA-BL-A13J-10A-01D-A273-01 TCGA-BL-A13J TCGA-BLCA CNV__snp6 Analyte Replicate Filter TCGA-BL-A13J-01A-11D-A10T-01 TCGA-BL-A13J-01A-11D-A273-01 TCGA-BL-A13J TCGA-BLCA CNV__unfiltered__snp6 Analyte Replicate Filter TCGA-BL-A13J-01A-11D-A10T-01 TCGA-BL-A13J-01A-11D-A273-01 +TCGA-BL-A13J TCGA-BLCA SNV__muse Analyte Replicate Filter TCGA-BL-A13J-01A-11D-A10S-08 TCGA-BL-A13J-01A-11D-A271-08 TCGA-BL-A13J TCGA-BLCA SNV__mutect Analyte Replicate Filter TCGA-BL-A13J-01A-11D-A10S-08 TCGA-BL-A13J-01A-11D-A271-08 +TCGA-BL-A13J TCGA-BLCA SNV__somaticsniper Analyte Replicate Filter TCGA-BL-A13J-01A-11D-A10S-08 TCGA-BL-A13J-01A-11D-A271-08 +TCGA-BL-A13J TCGA-BLCA SNV__varscan Analyte Replicate Filter TCGA-BL-A13J-01A-11D-A10S-08 TCGA-BL-A13J-01A-11D-A271-08 TCGA-BL-A13J TCGA-BLCA mRNA__counts__FPKM Analyte Replicate Filter TCGA-BL-A13J-01A-11R-A10U-07 TCGA-BL-A13J-01A-11R-A277-07 TCGA-BL-A13J TCGA-BLCA mRNA__geneExpNormed__FPKM Analyte Replicate Filter TCGA-BL-A13J-01A-11R-A10U-07 TCGA-BL-A13J-01A-11R-A277-07 TCGA-BL-A13J TCGA-BLCA mRNA__geneExp__FPKM Analyte Replicate Filter TCGA-BL-A13J-01A-11R-A10U-07 TCGA-BL-A13J-01A-11R-A277-07 diff --git a/tests/baselines/dice-files.txt b/tests/baselines/dice-files.txt index d77a61f..82504d9 100644 --- a/tests/baselines/dice-files.txt +++ b/tests/baselines/dice-files.txt @@ -6,9 +6,21 @@ TCGA-ACC/CNV__unfiltered__snp6/TCGA-OR-A5K2-01A-11D-A29H-01.b0ef98ef-b83b-4f51-9 TCGA-ACC/CNV__unfiltered__snp6/TCGA-OR-A5K2-10B-01D-A29K-01.a774d500-8c68-4071-a3b1-328f346b417c.txt TCGA-ACC/CNV__unfiltered__snp6/TCGA-OR-A5L1-01A-11D-A309-01.477185ad-aafa-4da0-be72-780bd66fb6cd.txt TCGA-ACC/CNV__unfiltered__snp6/TCGA-OR-A5L1-10A-01D-A309-01.7c263070-5b38-4d8c-9a31-899e1ba9d91d.txt +TCGA-ACC/SNV__muse/9d298cc7-71d2-43f5-835d-d7ef7a43bb11.maf.txt +TCGA-ACC/SNV__muse/TCGA-OR-A5K2-01A-11D-A29I-10.9d298cc7-71d2-43f5-835d-d7ef7a43bb11.maf.txt +TCGA-ACC/SNV__muse/TCGA-OR-A5L1-01A-11D-A30A-10.9d298cc7-71d2-43f5-835d-d7ef7a43bb11.maf.txt +TCGA-ACC/SNV__mutect/81ac2c46-37db-4dcd-923a-061a7ae626a3.maf.txt +TCGA-ACC/SNV__mutect/TCGA-OR-A5K2-01A-11D-A29I-10.81ac2c46-37db-4dcd-923a-061a7ae626a3.maf.txt TCGA-ACC/SNV__mutect/TCGA-OR-A5K2-01A-11D-A29I-10.ac3a9f5a-d78e-4b13-acb8-1001b215ffb6.maf.txt +TCGA-ACC/SNV__mutect/TCGA-OR-A5L1-01A-11D-A30A-10.81ac2c46-37db-4dcd-923a-061a7ae626a3.maf.txt TCGA-ACC/SNV__mutect/TCGA-OR-A5L1-01A-11D-A30A-10.ac3a9f5a-d78e-4b13-acb8-1001b215ffb6.maf.txt TCGA-ACC/SNV__mutect/ac3a9f5a-d78e-4b13-acb8-1001b215ffb6.maf.txt +TCGA-ACC/SNV__somaticsniper/422bff06-f1b2-4768-be4a-8bcb82644ce2.maf.txt +TCGA-ACC/SNV__somaticsniper/TCGA-OR-A5K2-01A-11D-A29I-10.422bff06-f1b2-4768-be4a-8bcb82644ce2.maf.txt +TCGA-ACC/SNV__somaticsniper/TCGA-OR-A5L1-01A-11D-A30A-10.422bff06-f1b2-4768-be4a-8bcb82644ce2.maf.txt +TCGA-ACC/SNV__varscan/747f92d2-3208-49cc-a564-3c5d0a2697ef.maf.txt +TCGA-ACC/SNV__varscan/TCGA-OR-A5K2-01A-11D-A29I-10.747f92d2-3208-49cc-a564-3c5d0a2697ef.maf.txt +TCGA-ACC/SNV__varscan/TCGA-OR-A5L1-01A-11D-A30A-10.747f92d2-3208-49cc-a564-3c5d0a2697ef.maf.txt TCGA-ACC/clinical__biospecimen/TCGA-OR-A5K2.2fde5970-89ee-46d3-ad62-8172804ca952.txt TCGA-ACC/clinical__biospecimen/TCGA-OR-A5L1.2c6c5c9b-2ac1-46aa-83ef-401cb9e20bfc.txt TCGA-ACC/clinical__primary/TCGA-OR-A5K2.e3e4a2d6-e5d6-46ec-8cef-d5b15ca4d9e4.txt @@ -43,16 +55,46 @@ TCGA-BLCA/CNV__unfiltered__snp6/TCGA-BL-A13J-01A-11D-A273-01.ae7bda94-c86a-4008- TCGA-BLCA/CNV__unfiltered__snp6/TCGA-BL-A13J-01B-04D-A273-01.4922dd35-5ab8-4117-9f6f-2fba7ebc86b2.txt TCGA-BLCA/CNV__unfiltered__snp6/TCGA-BL-A13J-10A-01D-A10T-01.0dee3246-0f12-4ee8-888e-75658bbb4a90.txt TCGA-BLCA/CNV__unfiltered__snp6/TCGA-BL-A13J-10A-01D-A273-01.045dae18-56ff-460f-9180-2fe17896044a.txt -TCGA-BLCA/SNV__mutect/60fafc48-e348-411e-ac9d-869043bad259.maf.txt -TCGA-BLCA/SNV__mutect/TCGA-BL-A0C8-01A-11D-A10S-08.60fafc48-e348-411e-ac9d-869043bad259.maf.txt -TCGA-BLCA/SNV__mutect/TCGA-BL-A0C8-01A-11D-A271-08.60fafc48-e348-411e-ac9d-869043bad259.maf.txt -TCGA-BLCA/SNV__mutect/TCGA-BL-A0C8-01B-04D-A271-08.60fafc48-e348-411e-ac9d-869043bad259.maf.txt -TCGA-BLCA/SNV__mutect/TCGA-BL-A13I-01A-11D-A13W-08.60fafc48-e348-411e-ac9d-869043bad259.maf.txt -TCGA-BLCA/SNV__mutect/TCGA-BL-A13I-01A-11D-A271-08.60fafc48-e348-411e-ac9d-869043bad259.maf.txt -TCGA-BLCA/SNV__mutect/TCGA-BL-A13I-01B-04D-A271-08.60fafc48-e348-411e-ac9d-869043bad259.maf.txt -TCGA-BLCA/SNV__mutect/TCGA-BL-A13J-01A-11D-A10S-08.60fafc48-e348-411e-ac9d-869043bad259.maf.txt -TCGA-BLCA/SNV__mutect/TCGA-BL-A13J-01A-11D-A271-08.60fafc48-e348-411e-ac9d-869043bad259.maf.txt -TCGA-BLCA/SNV__mutect/TCGA-BL-A13J-01B-04D-A271-08.60fafc48-e348-411e-ac9d-869043bad259.maf.txt +TCGA-BLCA/SNV__muse/7ed5eb26-d52c-45c5-bfa1-e39f963007a8.maf.txt +TCGA-BLCA/SNV__muse/TCGA-BL-A0C8-01A-11D-A10S-08.7ed5eb26-d52c-45c5-bfa1-e39f963007a8.maf.txt +TCGA-BLCA/SNV__muse/TCGA-BL-A0C8-01A-11D-A271-08.7ed5eb26-d52c-45c5-bfa1-e39f963007a8.maf.txt +TCGA-BLCA/SNV__muse/TCGA-BL-A0C8-01B-04D-A271-08.7ed5eb26-d52c-45c5-bfa1-e39f963007a8.maf.txt +TCGA-BLCA/SNV__muse/TCGA-BL-A13I-01A-11D-A13W-08.7ed5eb26-d52c-45c5-bfa1-e39f963007a8.maf.txt +TCGA-BLCA/SNV__muse/TCGA-BL-A13I-01A-11D-A271-08.7ed5eb26-d52c-45c5-bfa1-e39f963007a8.maf.txt +TCGA-BLCA/SNV__muse/TCGA-BL-A13I-01B-04D-A271-08.7ed5eb26-d52c-45c5-bfa1-e39f963007a8.maf.txt +TCGA-BLCA/SNV__muse/TCGA-BL-A13J-01A-11D-A10S-08.7ed5eb26-d52c-45c5-bfa1-e39f963007a8.maf.txt +TCGA-BLCA/SNV__muse/TCGA-BL-A13J-01A-11D-A271-08.7ed5eb26-d52c-45c5-bfa1-e39f963007a8.maf.txt +TCGA-BLCA/SNV__muse/TCGA-BL-A13J-01B-04D-A271-08.7ed5eb26-d52c-45c5-bfa1-e39f963007a8.maf.txt +TCGA-BLCA/SNV__mutect/0e239d8f-47b0-4e47-9716-e9ecc87605b9.maf.txt +TCGA-BLCA/SNV__mutect/TCGA-BL-A0C8-01A-11D-A10S-08.0e239d8f-47b0-4e47-9716-e9ecc87605b9.maf.txt +TCGA-BLCA/SNV__mutect/TCGA-BL-A0C8-01A-11D-A271-08.0e239d8f-47b0-4e47-9716-e9ecc87605b9.maf.txt +TCGA-BLCA/SNV__mutect/TCGA-BL-A0C8-01B-04D-A271-08.0e239d8f-47b0-4e47-9716-e9ecc87605b9.maf.txt +TCGA-BLCA/SNV__mutect/TCGA-BL-A13I-01A-11D-A13W-08.0e239d8f-47b0-4e47-9716-e9ecc87605b9.maf.txt +TCGA-BLCA/SNV__mutect/TCGA-BL-A13I-01A-11D-A271-08.0e239d8f-47b0-4e47-9716-e9ecc87605b9.maf.txt +TCGA-BLCA/SNV__mutect/TCGA-BL-A13I-01B-04D-A271-08.0e239d8f-47b0-4e47-9716-e9ecc87605b9.maf.txt +TCGA-BLCA/SNV__mutect/TCGA-BL-A13J-01A-11D-A10S-08.0e239d8f-47b0-4e47-9716-e9ecc87605b9.maf.txt +TCGA-BLCA/SNV__mutect/TCGA-BL-A13J-01A-11D-A271-08.0e239d8f-47b0-4e47-9716-e9ecc87605b9.maf.txt +TCGA-BLCA/SNV__mutect/TCGA-BL-A13J-01B-04D-A271-08.0e239d8f-47b0-4e47-9716-e9ecc87605b9.maf.txt +TCGA-BLCA/SNV__somaticsniper/17350cc9-f9ae-48c2-8663-25d794e873d1.maf.txt +TCGA-BLCA/SNV__somaticsniper/TCGA-BL-A0C8-01A-11D-A10S-08.17350cc9-f9ae-48c2-8663-25d794e873d1.maf.txt +TCGA-BLCA/SNV__somaticsniper/TCGA-BL-A0C8-01A-11D-A271-08.17350cc9-f9ae-48c2-8663-25d794e873d1.maf.txt +TCGA-BLCA/SNV__somaticsniper/TCGA-BL-A0C8-01B-04D-A271-08.17350cc9-f9ae-48c2-8663-25d794e873d1.maf.txt +TCGA-BLCA/SNV__somaticsniper/TCGA-BL-A13I-01A-11D-A13W-08.17350cc9-f9ae-48c2-8663-25d794e873d1.maf.txt +TCGA-BLCA/SNV__somaticsniper/TCGA-BL-A13I-01A-11D-A271-08.17350cc9-f9ae-48c2-8663-25d794e873d1.maf.txt +TCGA-BLCA/SNV__somaticsniper/TCGA-BL-A13I-01B-04D-A271-08.17350cc9-f9ae-48c2-8663-25d794e873d1.maf.txt +TCGA-BLCA/SNV__somaticsniper/TCGA-BL-A13J-01A-11D-A10S-08.17350cc9-f9ae-48c2-8663-25d794e873d1.maf.txt +TCGA-BLCA/SNV__somaticsniper/TCGA-BL-A13J-01A-11D-A271-08.17350cc9-f9ae-48c2-8663-25d794e873d1.maf.txt +TCGA-BLCA/SNV__somaticsniper/TCGA-BL-A13J-01B-04D-A271-08.17350cc9-f9ae-48c2-8663-25d794e873d1.maf.txt +TCGA-BLCA/SNV__varscan/4a755399-e5b5-4d0e-b1e3-dae24b81590e.maf.txt +TCGA-BLCA/SNV__varscan/TCGA-BL-A0C8-01A-11D-A10S-08.4a755399-e5b5-4d0e-b1e3-dae24b81590e.maf.txt +TCGA-BLCA/SNV__varscan/TCGA-BL-A0C8-01A-11D-A271-08.4a755399-e5b5-4d0e-b1e3-dae24b81590e.maf.txt +TCGA-BLCA/SNV__varscan/TCGA-BL-A0C8-01B-04D-A271-08.4a755399-e5b5-4d0e-b1e3-dae24b81590e.maf.txt +TCGA-BLCA/SNV__varscan/TCGA-BL-A13I-01A-11D-A13W-08.4a755399-e5b5-4d0e-b1e3-dae24b81590e.maf.txt +TCGA-BLCA/SNV__varscan/TCGA-BL-A13I-01A-11D-A271-08.4a755399-e5b5-4d0e-b1e3-dae24b81590e.maf.txt +TCGA-BLCA/SNV__varscan/TCGA-BL-A13I-01B-04D-A271-08.4a755399-e5b5-4d0e-b1e3-dae24b81590e.maf.txt +TCGA-BLCA/SNV__varscan/TCGA-BL-A13J-01A-11D-A10S-08.4a755399-e5b5-4d0e-b1e3-dae24b81590e.maf.txt +TCGA-BLCA/SNV__varscan/TCGA-BL-A13J-01A-11D-A271-08.4a755399-e5b5-4d0e-b1e3-dae24b81590e.maf.txt +TCGA-BLCA/SNV__varscan/TCGA-BL-A13J-01B-04D-A271-08.4a755399-e5b5-4d0e-b1e3-dae24b81590e.maf.txt TCGA-BLCA/clinical__biospecimen/TCGA-BL-A0C8.3cb15754-bc4a-433f-9ee4-201fe1de91c6.txt TCGA-BLCA/clinical__biospecimen/TCGA-BL-A13I.58652642-a3b5-432a-9b31-5a19cdb3ca57.txt TCGA-BLCA/clinical__biospecimen/TCGA-BL-A13J.0995844b-7d08-49f8-9e55-d39327e61dbd.txt @@ -127,9 +169,21 @@ TCGA-ESCA/CNV__unfiltered__snp6/TCGA-IG-A3YB-01A-11D-A246-01.7789cfd4-2eab-416b- TCGA-ESCA/CNV__unfiltered__snp6/TCGA-IG-A3YB-10A-01D-A246-01.a22ec975-483d-4a5d-92ba-5762f246d741.txt TCGA-ESCA/CNV__unfiltered__snp6/TCGA-L5-A4OI-01A-11D-A25X-01.92990d84-9f3c-46d6-89ab-fb631dd4139f.txt TCGA-ESCA/CNV__unfiltered__snp6/TCGA-L5-A4OI-11A-11D-A25X-01.57dd98d2-a674-4b94-8a51-60b3e32f0a14.txt +TCGA-ESCA/SNV__muse/TCGA-IG-A3YB-01A-11D-A247-09.b267fee6-e9a0-4d50-88fb-79eb8da1e8dd.maf.txt +TCGA-ESCA/SNV__muse/TCGA-L5-A4OI-01A-11D-A27G-09.b267fee6-e9a0-4d50-88fb-79eb8da1e8dd.maf.txt +TCGA-ESCA/SNV__muse/b267fee6-e9a0-4d50-88fb-79eb8da1e8dd.maf.txt +TCGA-ESCA/SNV__mutect/7f8e1e7c-621c-4dfd-8fad-af07c739dbfc.maf.txt +TCGA-ESCA/SNV__mutect/TCGA-IG-A3YB-01A-11D-A247-09.7f8e1e7c-621c-4dfd-8fad-af07c739dbfc.maf.txt TCGA-ESCA/SNV__mutect/TCGA-IG-A3YB-01A-11D-A247-09.c7fe427a-b447-4840-8cd1-fe33a236dfe7.maf.txt +TCGA-ESCA/SNV__mutect/TCGA-L5-A4OI-01A-11D-A27G-09.7f8e1e7c-621c-4dfd-8fad-af07c739dbfc.maf.txt TCGA-ESCA/SNV__mutect/TCGA-L5-A4OI-01A-11D-A27G-09.c7fe427a-b447-4840-8cd1-fe33a236dfe7.maf.txt TCGA-ESCA/SNV__mutect/c7fe427a-b447-4840-8cd1-fe33a236dfe7.maf.txt +TCGA-ESCA/SNV__somaticsniper/56890408-24a5-4b5a-b822-aaf872c057b8.maf.txt +TCGA-ESCA/SNV__somaticsniper/TCGA-IG-A3YB-01A-11D-A247-09.56890408-24a5-4b5a-b822-aaf872c057b8.maf.txt +TCGA-ESCA/SNV__somaticsniper/TCGA-L5-A4OI-01A-11D-A27G-09.56890408-24a5-4b5a-b822-aaf872c057b8.maf.txt +TCGA-ESCA/SNV__varscan/9dab6855-ba5e-4afb-b3a0-f034a6f82eb2.maf.txt +TCGA-ESCA/SNV__varscan/TCGA-IG-A3YB-01A-11D-A247-09.9dab6855-ba5e-4afb-b3a0-f034a6f82eb2.maf.txt +TCGA-ESCA/SNV__varscan/TCGA-L5-A4OI-01A-11D-A27G-09.9dab6855-ba5e-4afb-b3a0-f034a6f82eb2.maf.txt TCGA-ESCA/clinical__biospecimen/TCGA-IG-A3YB.719ce235-bde8-4e97-af75-e0c679df992e.txt TCGA-ESCA/clinical__biospecimen/TCGA-L5-A4OI.0815e9e1-5e21-483b-adcc-dc1e6b6c66e9.txt TCGA-ESCA/clinical__primary/TCGA-IG-A3YB.c1aa26ce-a85d-4266-8758-90e56a7533ea.txt @@ -159,9 +213,21 @@ TCGA-SKCM/CNV__unfiltered__snp6/TCGA-D3-A3C7-06A-11D-A194-01.9dfcb350-d18e-4400- TCGA-SKCM/CNV__unfiltered__snp6/TCGA-D3-A3C7-10A-01D-A195-01.3d11f3d8-1fde-46ea-a962-187a56da4700.txt TCGA-SKCM/CNV__unfiltered__snp6/TCGA-EE-A3J8-06A-11D-A20B-01.bd0e36f9-88c5-4750-86d6-00ca853ce452.txt TCGA-SKCM/CNV__unfiltered__snp6/TCGA-EE-A3J8-10A-01D-A20B-01.0dd468b0-4e9f-47a7-8594-10e9dc675d50.txt +TCGA-SKCM/SNV__muse/TCGA-D3-A3C7-06A-11D-A196-08.e433a47f-7281-42aa-8bba-0affd1eb6df0.maf.txt +TCGA-SKCM/SNV__muse/TCGA-EE-A3J8-06A-11D-A20D-08.e433a47f-7281-42aa-8bba-0affd1eb6df0.maf.txt +TCGA-SKCM/SNV__muse/e433a47f-7281-42aa-8bba-0affd1eb6df0.maf.txt +TCGA-SKCM/SNV__mutect/4b7a5729-b83e-4837-9b61-a6002dce1c0a.maf.txt TCGA-SKCM/SNV__mutect/7d62b913-4ae8-4c59-9819-71711f12b3b2.maf.txt +TCGA-SKCM/SNV__mutect/TCGA-D3-A3C7-06A-11D-A196-08.4b7a5729-b83e-4837-9b61-a6002dce1c0a.maf.txt TCGA-SKCM/SNV__mutect/TCGA-D3-A3C7-06A-11D-A196-08.7d62b913-4ae8-4c59-9819-71711f12b3b2.maf.txt +TCGA-SKCM/SNV__mutect/TCGA-EE-A3J8-06A-11D-A20D-08.4b7a5729-b83e-4837-9b61-a6002dce1c0a.maf.txt TCGA-SKCM/SNV__mutect/TCGA-EE-A3J8-06A-11D-A20D-08.7d62b913-4ae8-4c59-9819-71711f12b3b2.maf.txt +TCGA-SKCM/SNV__somaticsniper/TCGA-D3-A3C7-06A-11D-A196-08.b8ef7b54-adb8-4751-93bd-c26349be4252.maf.txt +TCGA-SKCM/SNV__somaticsniper/TCGA-EE-A3J8-06A-11D-A20D-08.b8ef7b54-adb8-4751-93bd-c26349be4252.maf.txt +TCGA-SKCM/SNV__somaticsniper/b8ef7b54-adb8-4751-93bd-c26349be4252.maf.txt +TCGA-SKCM/SNV__varscan/6c961926-7792-42fa-9a16-c62f60e2557b.maf.txt +TCGA-SKCM/SNV__varscan/TCGA-D3-A3C7-06A-11D-A196-08.6c961926-7792-42fa-9a16-c62f60e2557b.maf.txt +TCGA-SKCM/SNV__varscan/TCGA-EE-A3J8-06A-11D-A20D-08.6c961926-7792-42fa-9a16-c62f60e2557b.maf.txt TCGA-SKCM/clinical__biospecimen/TCGA-D3-A3C7.192bbf1c-4f69-463c-b9ec-8d7827c8312a.txt TCGA-SKCM/clinical__biospecimen/TCGA-EE-A3J8.b6b16c1b-e0c3-4e43-83dd-3d450ed53c33.txt TCGA-SKCM/clinical__primary/TCGA-D3-A3C7.51c48680-6b80-4722-a06d-bdcc6e84c087.txt diff --git a/tests/baselines/dice-md5sums.txt b/tests/baselines/dice-md5sums.txt index c994d84..9d94868 100644 --- a/tests/baselines/dice-md5sums.txt +++ b/tests/baselines/dice-md5sums.txt @@ -1,180 +1,246 @@ -062d34020b3242dc793cb033cacd5bd4 TCGA-ESCA/methylation__HM450/TCGA-L5-A4OI-11A-11D-A265-05.20048f6e-2f05-4029-af70-a664411f0fe7.data.txt -083b74104a4d41a2b86e4826c6b4f726 TCGA-BLCA/miR__geneExp/TCGA-BL-A13J-01A-11R-A27D-13.890319d9-6015-4909-9cc8-9c1ddca57594.txt -0baa0293248f722c449a8dcf37b71921 TCGA-BLCA/clinical__biospecimen/TCGA-BL-A13I.58652642-a3b5-432a-9b31-5a19cdb3ca57.txt -0f7a6227b6a8487e560987080127aa36 TCGA-SKCM/CNV__snp6/TCGA-D3-A3C7-10A-01D-A195-01.0a4bab0b-00f6-4f13-a1e6-31c20b2c16d6.txt -102a70dbc7cf0fb3e82d2f67d4fc1930 TCGA-ACC/methylation__HM450/TCGA-OR-A5K2-01A-11D-A29J-05.c5a36e2a-33cd-484a-91db-4f030a5f5415.data.txt -112134bb595f54a643047375f480eec5 TCGA-ESCA/miR__isoformExp/TCGA-IG-A3YB-01A-11R-A24L-13.e80ec825-2da2-4fa3-a42e-afaf4a18d9bf.txt -12762a0ec28570817a695ed0f591ca87 TCGA-ACC/clinical__biospecimen/TCGA-OR-A5K2.2fde5970-89ee-46d3-ad62-8172804ca952.txt -128d550feab7b613334fad401b35c4d2 TCGA-SKCM/SNV__mutect/TCGA-D3-A3C7-06A-11D-A196-08.7d62b913-4ae8-4c59-9819-71711f12b3b2.maf.txt -13d36b29346343631bf953bc3a4df229 TCGA-BLCA/CNV__unfiltered__snp6/TCGA-BL-A13I-11A-11D-A13V-01.1c6ceb91-6775-4b39-a4c2-603bdee5b4df.txt -14bd9f76abc1d571b42c2435ecd5a26e TCGA-BLCA/miR__isoformExp/TCGA-BL-A13I-01B-04R-A27D-13.3bf77f03-b4bf-4425-aac5-aa14545b1281.txt -14c1ffa80aa11a2f7fd1ae2907831cad TCGA-ACC/CNV__unfiltered__snp6/TCGA-OR-A5L1-01A-11D-A309-01.477185ad-aafa-4da0-be72-780bd66fb6cd.txt -1551cb4166696b5f3db78c020aaeecfc TCGA-BLCA/miR__isoformExp/TCGA-BL-A13J-01A-11R-A10V-13.42616e6e-2d5c-497e-afe0-b2528ec48486.txt -15f673f5522dd577c592502b6aca3dc4 TCGA-BLCA/mRNA__geneExp__FPKM/TCGA-BL-A13J-01A-11R-A277-07.30f7c07d-32f3-4148-9309-21a193bae631.txt -196990803691564c5083d954ed611f85 TCGA-SKCM/miR__isoformExp/TCGA-D3-A3C7-06A-11R-A18X-13.65fb92ff-5b86-424c-8d3f-39444e2bf3e5.txt -19babe0242f4388422b23ccb196cc6d4 TCGA-ESCA/CNV__unfiltered__snp6/TCGA-L5-A4OI-01A-11D-A25X-01.92990d84-9f3c-46d6-89ab-fb631dd4139f.txt -1a1e2d8629af0f483c061c04dedb5952 TCGA-ESCA/methylation__HM450/TCGA-L5-A4OI-01A-11D-A265-05.09f09483-ca1b-4cc6-9d4f-784d22471df7.data.txt -1e60bd6c65a4552b396492e142afea0b TCGA-BLCA/CNV__snp6/TCGA-BL-A13J-01A-11D-A273-01.c063b466-b9d8-49c2-a39f-100770375d8f.txt -216094a130189bf4c2a90f6bf3b2fa9b TCGA-BLCA/methylation__HM450/TCGA-BL-A0C8-01A-11D-A10W-05.f0aa1e07-3c84-4ace-a078-e398c21ab1fc.data.txt -22d0ae2785a2ad29ad4f3235a0425bcf TCGA-ACC/CNV__unfiltered__snp6/TCGA-OR-A5K2-10B-01D-A29K-01.a774d500-8c68-4071-a3b1-328f346b417c.txt -24e038ab5c968d7b68d97e824e3b0790 TCGA-SKCM/SNV__mutect/TCGA-EE-A3J8-06A-11D-A20D-08.7d62b913-4ae8-4c59-9819-71711f12b3b2.maf.txt -283be73273f6241c443870e11bfab58a TCGA-BLCA/mRNA__geneExpNormed__FPKM/TCGA-BL-A13I-01A-11R-A13Y-07.c257ac08-6ed2-4e7f-8733-d946be1c6d5c.txt -28d71455d82579a23875cb0e7711e2a9 TCGA-SKCM/CNV__snp6/TCGA-D3-A3C7-06A-11D-A194-01.6ee6e045-fe18-4e98-bd7f-9bf133605bc4.txt -2b561e95d8b84e5785be62d1765c4871 TCGA-BLCA/miR__geneExp/TCGA-BL-A13J-11A-13R-A10V-13.42d7b4b3-e2c8-4117-ab8f-4762238084f4.txt -2beebd9031b3b58e0018091ea5a27565 TCGA-ESCA/miR__geneExp/TCGA-IG-A3YB-01A-11R-A24L-13.7622ed32-0f43-425f-b4b2-4087c0bb64a7.txt -2db6f5d94dae082b9d7618f904f2e332 TCGA-ESCA/SNV__mutect/TCGA-IG-A3YB-01A-11D-A247-09.c7fe427a-b447-4840-8cd1-fe33a236dfe7.maf.txt -2e5d91690de679f1f68ed284a69f72ec TCGA-BLCA/methylation__HM450/TCGA-BL-A13I-01B-04D-A276-05.79e66bef-80a0-42c8-8e35-00687018b4b0.data.txt -2f00a3baa579bfa1db4143daa8d77618 TCGA-SKCM/mRNA__counts__FPKM/TCGA-EE-A3J8-06A-11R-A20F-07.9c488510-a229-45e9-b708-0b666c257dbc.txt -338cd5adbdf7a6cd61e9cd8ce1eb5cfd TCGA-ESCA/CNV__unfiltered__snp6/TCGA-L5-A4OI-11A-11D-A25X-01.57dd98d2-a674-4b94-8a51-60b3e32f0a14.txt -34d75fa6cf0386d2493368307a088da2 TCGA-ACC/SNV__mutect/TCGA-OR-A5L1-01A-11D-A30A-10.ac3a9f5a-d78e-4b13-acb8-1001b215ffb6.maf.txt -35d339c2f9e971addbe84c0a93a48bf9 TCGA-SKCM/SNV__mutect/7d62b913-4ae8-4c59-9819-71711f12b3b2.maf.txt -365e2c5dd77cac3240e560f3482c45fd TCGA-BLCA/CNV__unfiltered__snp6/TCGA-BL-A0C8-01A-11D-A273-01.4b8e94e8-c2a6-4cfc-a638-6df616d9f374.txt -38f4692821fbf791ddf33b1688061473 TCGA-BLCA/mRNA__counts__FPKM/TCGA-BL-A13I-01A-11R-A277-07.62981652-048b-4a40-8687-736024c7c0a1.txt -39a922fcb450ba07960c1860bc3dd0a2 TCGA-BLCA/mRNA__geneExp__FPKM/TCGA-BL-A13J-01B-04R-A277-07.e8e1abd1-9fa2-4d5b-899c-0fba5ef14ef1.txt -3a40d924f8424dfe0bb43e6e88b7528b TCGA-SKCM/miR__geneExp/TCGA-D3-A3C7-06A-11R-A18X-13.05f6b2f8-6aaf-468f-a5fa-96f1ab5c0d43.txt -3c24c0445b3c06583ae0d5dd93baae57 TCGA-ESCA/clinical__primary/TCGA-L5-A4OI.4e183835-3efe-4f3d-ace0-a91df43bde60.txt -3ddcc8d022094335aadcdf4df4c65169 TCGA-ESCA/CNV__snp6/TCGA-IG-A3YB-10A-01D-A246-01.9fe8b124-43df-4de7-bb93-89832dcce477.txt -3e402fa67c3ae8ca6e2873a32a665dd8 TCGA-SKCM/miR__isoformExp/TCGA-EE-A3J8-06A-11R-A20E-13.ff62bfa3-ff36-4d41-84ed-debe33e62560.txt -3fc6145795198f20237cc4d9602fbad1 TCGA-BLCA/CNV__unfiltered__snp6/TCGA-BL-A0C8-10A-01D-A10T-01.78c8db33-052b-45d7-b525-013003bd5e66.txt -44dd315ae0ed70c3f5046875b30fb7a9 TCGA-ESCA/miR__geneExp/TCGA-L5-A4OI-01A-11R-A360-13.9188849d-43eb-4f4d-a796-f3513db9cf6f.txt -45529cfe9f84e750f2d827dbde91455e TCGA-BLCA/methylation__HM450/TCGA-BL-A0C8-01A-11D-A276-05.f26962a4-1d81-4674-9d74-c256a125aa46.data.txt -467c217f00820d2f609cf174a42c8927 TCGA-BLCA/mRNA__counts__FPKM/TCGA-BL-A13J-01A-11R-A10U-07.76530c44-7357-4193-bada-a4eea20e79fe.txt -4a6eeb3ed76babc74f9312e04924ba35 TCGA-BLCA/SNV__mutect/60fafc48-e348-411e-ac9d-869043bad259.maf.txt -4b4d6ee8bbd711cb19d640fdf1218045 TCGA-BLCA/miR__geneExp/TCGA-BL-A0C8-01A-11R-A10V-13.0656c281-e067-44a3-8070-9331327c60db.txt -4e2803ba3b67365dbacda942dd29a599 TCGA-BLCA/miR__isoformExp/TCGA-BL-A0C8-01B-04R-A27D-13.09097819-2bae-433e-9cf9-44bc3ae50d34.txt -4f83a984e5038503b7365beff2ff7a9e TCGA-BLCA/mRNA__geneExpNormed__FPKM/TCGA-BL-A13J-01A-11R-A277-07.1342191b-e6b6-4a1e-b189-05b1d4e79474.txt -4f8a0f47321051cfa14b2212dc7575e1 TCGA-BLCA/mRNA__geneExp__FPKM/TCGA-BL-A13I-01A-11R-A13Y-07.a5134a99-7364-4164-bfaa-4867a9cb54df.txt -5031e96f96e2174b6a61406cad4110b1 TCGA-SKCM/clinical__primary/TCGA-D3-A3C7.51c48680-6b80-4722-a06d-bdcc6e84c087.txt -5207a22da34adeb0a98b7fb662990ce0 TCGA-SKCM/methylation__HM450/TCGA-EE-A3J8-06A-11D-A211-05.342836f4-b506-4bf8-a1f6-949ce9cb17dc.data.txt -545d756287ec0fa06f4babbaba294b0d TCGA-BLCA/methylation__HM450/TCGA-BL-A13I-01A-11D-A276-05.2e6821ed-8e54-4b8f-8a3e-581bb8eae81a.data.txt -54e1b41f10e449df6f1c910632c6041e TCGA-BLCA/CNV__snp6/TCGA-BL-A0C8-01B-04D-A273-01.5437d647-67ef-473a-ad5a-68a0fbe8e784.txt -54eaac869eeace8feb3ea48c801558c6 TCGA-BLCA/mRNA__counts__FPKM/TCGA-BL-A13J-01A-11R-A277-07.e5b4565c-9e79-4226-b106-29cf7f8f4a94.txt -57809e94bb477338c21ff0d731ff2375 TCGA-ESCA/miR__geneExp/TCGA-IG-A3YB-01A-11R-A360-13.d6c6aca1-4b04-4856-a3e4-adbd4bd33354.txt -581f9fcba684af259accf95d56a36b22 TCGA-BLCA/SNV__mutect/TCGA-BL-A0C8-01A-11D-A10S-08.60fafc48-e348-411e-ac9d-869043bad259.maf.txt -581f9fcba684af259accf95d56a36b22 TCGA-BLCA/SNV__mutect/TCGA-BL-A0C8-01B-04D-A271-08.60fafc48-e348-411e-ac9d-869043bad259.maf.txt -581f9fcba684af259accf95d56a36b22 TCGA-BLCA/SNV__mutect/TCGA-BL-A13I-01A-11D-A13W-08.60fafc48-e348-411e-ac9d-869043bad259.maf.txt -581f9fcba684af259accf95d56a36b22 TCGA-BLCA/SNV__mutect/TCGA-BL-A13I-01B-04D-A271-08.60fafc48-e348-411e-ac9d-869043bad259.maf.txt -581f9fcba684af259accf95d56a36b22 TCGA-BLCA/SNV__mutect/TCGA-BL-A13J-01A-11D-A10S-08.60fafc48-e348-411e-ac9d-869043bad259.maf.txt -581f9fcba684af259accf95d56a36b22 TCGA-BLCA/SNV__mutect/TCGA-BL-A13J-01B-04D-A271-08.60fafc48-e348-411e-ac9d-869043bad259.maf.txt -5877edc6534a8ce466d6b1974f0f8038 TCGA-BLCA/CNV__unfiltered__snp6/TCGA-BL-A13J-01A-11D-A273-01.ae7bda94-c86a-4008-a593-2a31f4dbd1f6.txt -58e02eb7e44562827d85d8dfdd94a476 TCGA-SKCM/CNV__unfiltered__snp6/TCGA-EE-A3J8-06A-11D-A20B-01.bd0e36f9-88c5-4750-86d6-00ca853ce452.txt -592909c4699fca5d5c0af1168df03adc TCGA-ACC/mRNA__geneExp__FPKM/TCGA-OR-A5K2-01A-11R-A29S-07.cc530ddb-02c2-47aa-9f3e-a5c39af69c5c.txt -59502a07d9254ee049e2b3ff9c4f791c TCGA-BLCA/mRNA__geneExp__FPKM/TCGA-BL-A13I-01B-04R-A277-07.6e6131cf-fdea-452b-9b65-49d334a097e8.txt -59de7e6b51bdd48c452f262590412c08 TCGA-BLCA/CNV__snp6/TCGA-BL-A13J-01B-04D-A273-01.d898ddd7-0b48-41c8-aed9-3852cb4d42cb.txt -5a44a8c0e1c6ef0051864c628496962c TCGA-SKCM/CNV__unfiltered__snp6/TCGA-EE-A3J8-10A-01D-A20B-01.0dd468b0-4e9f-47a7-8594-10e9dc675d50.txt -5c434c537a88496cb00582451e10a0cd TCGA-BLCA/miR__geneExp/TCGA-BL-A0C8-01A-11R-A27D-13.17b8111c-cb88-4b7b-88f4-b04e39c34b74.txt -5e87b22af8f44c949dfb0182025f38eb TCGA-BLCA/CNV__snp6/TCGA-BL-A13J-10A-01D-A10T-01.56892be9-4a15-42de-8483-d45cdd86a2d8.txt -62179e78ab35ed07d9448a5369dc6bc3 TCGA-BLCA/mRNA__geneExpNormed__FPKM/TCGA-BL-A13J-11A-13R-A10U-07.3a460d44-54ce-49dc-8cb7-39071f42e696.txt -63fd347033ce17a93bf8bd9f5629be0d TCGA-ACC/CNV__snp6/TCGA-OR-A5K2-10B-01D-A29K-01.e5012a07-cbb0-4bb7-903c-5b706f2ea874.txt -64c37aea21507e370f058c7ddd7cadda TCGA-BLCA/miR__isoformExp/TCGA-BL-A13J-11A-13R-A10V-13.da775086-d722-42ad-b8a5-58f4316de8b3.txt -671e6ed58b84cfcbce2994b0535f3bca TCGA-SKCM/CNV__unfiltered__snp6/TCGA-D3-A3C7-06A-11D-A194-01.9dfcb350-d18e-4400-85e4-23b0a745931f.txt -675ce91f267289abd77e77400a9f0563 TCGA-ACC/mRNA__geneExpNormed__FPKM/TCGA-OR-A5K2-01A-11R-A29S-07.1cf80958-0f98-445b-b91c-eae101b8fb38.txt -691802dbcd70c77ba2372546b8010f8d TCGA-BLCA/SNV__mutect/TCGA-BL-A0C8-01A-11D-A271-08.60fafc48-e348-411e-ac9d-869043bad259.maf.txt -6a418cf37ee98c742f55ca885f32fc9b TCGA-BLCA/mRNA__counts__FPKM/TCGA-BL-A13I-01B-04R-A277-07.d4ce3f7a-633a-4d24-95b5-953b2bfd1e9f.txt -6d15abfb6a80523a36d3bc309f53ccc6 TCGA-ACC/CNV__snp6/TCGA-OR-A5L1-01A-11D-A309-01.05a4633f-f012-43c0-90fd-268ad47f85b0.txt -71f52d6da5068db02fcf798adedc33be TCGA-SKCM/CNV__unfiltered__snp6/TCGA-D3-A3C7-10A-01D-A195-01.3d11f3d8-1fde-46ea-a962-187a56da4700.txt -73a2f0bf565818571d5aad15c3351fee TCGA-SKCM/miR__geneExp/TCGA-EE-A3J8-06A-11R-A20E-13.d20cacfb-6450-4e67-8d76-13befceb907e.txt -742a48701c46b20e94359e7c5db6462a TCGA-SKCM/CNV__snp6/TCGA-EE-A3J8-10A-01D-A20B-01.7ad67071-bc10-4430-bdf5-291b872609aa.txt -765640ab3a90612b48bfa7ecbbe5da1b TCGA-ESCA/miR__geneExp/TCGA-L5-A4OI-01A-11R-A261-13.46956ae7-fed4-47a9-8b87-00356006ff92.txt -7672970245cabe45e4f0670dd9ffd248 TCGA-ESCA/mRNA__counts__FPKM/TCGA-IG-A3YB-01A-11R-A36D-31.6001e694-b12d-4338-84dd-7180cac79e15.txt -771ec011acd226e6992038cdd8e06f56 TCGA-SKCM/mRNA__geneExpNormed__FPKM/TCGA-D3-A3C7-06A-11R-A18U-07.c7992525-cdee-49fe-9b24-78db03a6c58d.txt -773510564c0c127df743cebcebecf81b TCGA-ACC/clinical__primary/TCGA-OR-A5K2.e3e4a2d6-e5d6-46ec-8cef-d5b15ca4d9e4.txt -79151f5d2db089738cc08f75f7efc385 TCGA-BLCA/mRNA__geneExpNormed__FPKM/TCGA-BL-A13I-01B-04R-A277-07.b1896668-90fc-407f-a53c-56c6510ad16e.txt -79a03956671d147168a6a824b108aa1b TCGA-BLCA/miR__isoformExp/TCGA-BL-A13I-01A-11R-A13X-13.574c8f0d-7619-4e1b-bf72-367c61d1f782.txt -7f08a8b7b4c8232867de511b99521f4b TCGA-BLCA/CNV__unfiltered__snp6/TCGA-BL-A13J-01A-11D-A10T-01.e21b5a9d-33ac-4779-a632-bf604a55d04f.txt -82d39d3045d2b08006c6b3b96d18aeeb TCGA-BLCA/mRNA__geneExp__FPKM/TCGA-BL-A0C8-01B-04R-A277-07.936c0db4-af45-4a2b-891a-dcde4a3897ed.txt -85da89686fc3c006a31794405e2cc2ab TCGA-ACC/mRNA__counts__FPKM/TCGA-OR-A5K2-01A-11R-A29S-07.76bfb639-1e16-4cf0-b280-a17305da2e13.txt -8698cc85ffad8f29500dcf0e79f22fbf TCGA-BLCA/CNV__snp6/TCGA-BL-A13I-01A-11D-A13V-01.b493298c-1b31-4e35-bd7f-d0e699e996fc.txt -86f7c59120019179b4196bbfd908dcca TCGA-SKCM/CNV__snp6/TCGA-EE-A3J8-06A-11D-A20B-01.3b10f099-c085-47de-813a-b1b0bb33f5a1.txt -87bbcb671e4e53e7c4b795cb268ace15 TCGA-BLCA/mRNA__geneExpNormed__FPKM/TCGA-BL-A13I-01A-11R-A277-07.901fa73e-da21-4f2c-9289-6d1240eefc9d.txt -87c431b86fdcf1a04c022bf884a90848 TCGA-BLCA/miR__geneExp/TCGA-BL-A13I-01B-04R-A27D-13.dbfd82bc-40a9-45c1-87ff-ac6a1ce2a0e9.txt -8ade7615261c36129467d9edb16323e3 TCGA-ESCA/CNV__snp6/TCGA-L5-A4OI-01A-11D-A25X-01.f904ee81-7611-48a1-9910-59c8a666330f.txt -8c62da607c88e134ee394fa1273baf14 TCGA-BLCA/miR__geneExp/TCGA-BL-A13J-01B-04R-A27D-13.9f5bbd0f-927b-426c-a734-d96effb97472.txt -8c6b404f808357a6417de4ad6df61cca TCGA-BLCA/miR__isoformExp/TCGA-BL-A0C8-01A-11R-A10V-13.8d9f295e-76e4-4cef-82f6-7f1af3b4d7f7.txt -8c87512d66b41c150f3ba0f8963750ad TCGA-ACC/clinical__biospecimen/TCGA-OR-A5L1.2c6c5c9b-2ac1-46aa-83ef-401cb9e20bfc.txt -8e868cd05fe074b44145ee09a23bd562 TCGA-ESCA/SNV__mutect/TCGA-L5-A4OI-01A-11D-A27G-09.c7fe427a-b447-4840-8cd1-fe33a236dfe7.maf.txt -8ff7d3108eec9fc4f32c44485b69216a TCGA-BLCA/methylation__HM450/TCGA-BL-A0C8-01B-04D-A276-05.4121d775-5546-4493-9b26-4fe1fd420469.data.txt -904297c95a7a22aad071f791133ec923 TCGA-ESCA/CNV__snp6/TCGA-IG-A3YB-01A-11D-A246-01.299a8a78-0da6-4f56-9d96-66413f9af000.txt -925dee49ad94b65f4a5d8dcd88bcca44 TCGA-BLCA/clinical__primary/TCGA-BL-A13I.ffc75f8c-685c-4bcf-ac1d-8a04211e2376.txt -94555e963a0c480571bde9da53cc59ac TCGA-BLCA/mRNA__geneExp__FPKM/TCGA-BL-A13I-01A-11R-A277-07.1edc7409-2d42-4d3e-89c8-3499bc364323.txt -9709f65589feea0e12d94803b53b524e TCGA-ACC/CNV__snp6/TCGA-OR-A5K2-01A-11D-A29H-01.dacf172e-89eb-4afa-9613-f683a558b088.txt -9b02da7278712c67749250bdf8607dec TCGA-BLCA/miR__geneExp/TCGA-BL-A13I-01A-11R-A27D-13.6f19f468-2594-454d-9fcd-b4db8cbcecf0.txt -9c4667b0f2cf275f456bfd2f46aa6ae0 TCGA-SKCM/mRNA__geneExpNormed__FPKM/TCGA-EE-A3J8-06A-11R-A20F-07.abc1a5a6-cd0b-450c-a650-dfe14fdb356b.txt -9c9df71a8face2c6ae40b77598d11d8f TCGA-BLCA/CNV__unfiltered__snp6/TCGA-BL-A0C8-01A-11D-A10T-01.642827c8-4b01-4b4e-9345-7d4f2843f714.txt -9d4cddd0a1adf126ec3aeb0e0cf87f87 TCGA-BLCA/methylation__HM450/TCGA-BL-A13I-01A-11D-A13Z-05.47c9b2e8-50fe-4433-8c04-fb0461db2509.data.txt -9def6c94dc5742d5739edf919a8ef703 TCGA-SKCM/clinical__primary/TCGA-EE-A3J8.151de1d5-6dc4-437e-be76-a076101939f5.txt -9fa5e0656263bf20406d6535fdb9b6f6 TCGA-BLCA/mRNA__geneExpNormed__FPKM/TCGA-BL-A0C8-01A-11R-A277-07.a69d254e-5222-4863-bbc2-5614e47504e8.txt -a4736f8056501d5a758929c3629a536b TCGA-ESCA/mRNA__geneExp__FPKM/TCGA-IG-A3YB-01A-11R-A36D-31.e0ed1b91-be78-4e80-9a2a-8faf99ffd78c.txt -a6766ad5710c00c589cbff493d3e43f7 TCGA-BLCA/CNV__unfiltered__snp6/TCGA-BL-A13J-01B-04D-A273-01.4922dd35-5ab8-4117-9f6f-2fba7ebc86b2.txt -a74f26f1ba2e366143ba9a893a613f09 TCGA-BLCA/methylation__HM450/TCGA-BL-A13J-01A-11D-A10W-05.cf119c4a-09a7-43ba-8264-7ff34bda6287.data.txt -a83fe2901f844199cdb933c6e35799cd TCGA-ESCA/clinical__biospecimen/TCGA-IG-A3YB.719ce235-bde8-4e97-af75-e0c679df992e.txt -a86653c82433a2a743b5b63181239083 TCGA-BLCA/miR__isoformExp/TCGA-BL-A13J-01A-11R-A27D-13.6924e6df-e8e4-4c29-8f09-d9171c775880.txt -a8df5280c15c17a40e8165de2db9dded TCGA-BLCA/mRNA__geneExp__FPKM/TCGA-BL-A13J-11A-13R-A10U-07.277e49dd-ae87-4b6a-91f2-121d47c6f330.txt -aa4864fb1ba4984e1837801f4eb4fb4d TCGA-BLCA/mRNA__counts__FPKM/TCGA-BL-A13J-11A-13R-A10U-07.48566693-0845-44b2-8612-4f713fee1bd7.txt -aa8ebd5b41fc927e2b7daa5d8f116a37 TCGA-ACC/clinical__primary/TCGA-OR-A5L1.dba7fa86-f439-4d98-8bc0-b5879dac0acc.txt -aaa5589b47e6bf7c5c4af85941bef5fd TCGA-BLCA/miR__geneExp/TCGA-BL-A13J-01A-11R-A10V-13.3b328a8d-2ee0-4429-87ac-fd0ddc60812c.txt -abfac06749980e8a6cf637bdaccfa0cc TCGA-BLCA/CNV__snp6/TCGA-BL-A13J-01A-11D-A10T-01.bdaf9cf7-4396-4af0-b6db-b80d549dceae.txt -ac60e1bb7909af8e90203140be965b38 TCGA-ESCA/mRNA__counts__FPKM/TCGA-L5-A4OI-01A-11R-A36D-31.f1de94f8-4a68-4edd-b4f5-c3548aee6d0f.txt -ad3539c132dc5886a4d1b6b3006ebf3a TCGA-BLCA/CNV__unfiltered__snp6/TCGA-BL-A0C8-01B-04D-A273-01.df23eb3d-050f-4c67-b531-0c68509e4761.txt -af55c37b646ffb78944e2f0af8fdf60b TCGA-ESCA/miR__isoformExp/TCGA-IG-A3YB-01A-11R-A360-13.f2947ffb-2d5c-4bca-8753-bfcc7d444319.txt -b18a75d3337d2c2d04ec1be665450d85 TCGA-BLCA/mRNA__counts__FPKM/TCGA-BL-A13J-01B-04R-A277-07.96ee0893-21d0-439f-af4a-9f40102483d6.txt -b4a07bcf3b58df3bd97ce0abe4b8c531 TCGA-BLCA/CNV__snp6/TCGA-BL-A0C8-10A-01D-A10T-01.a60d8205-8eb4-40d9-b203-507ae704fbbb.txt -b4ccfb8a3816ae77b2a8440766d3a574 TCGA-BLCA/methylation__HM450/TCGA-BL-A13J-11A-13D-A10W-05.416a338a-4d07-4134-be96-a660483f4d05.data.txt -b5d8b06369aa9bffcda2c7f5bde5851d TCGA-BLCA/CNV__unfiltered__snp6/TCGA-BL-A13J-10A-01D-A10T-01.0dee3246-0f12-4ee8-888e-75658bbb4a90.txt -b745b4ab9714a6866e5242fe3c7cdadc TCGA-SKCM/clinical__biospecimen/TCGA-EE-A3J8.b6b16c1b-e0c3-4e43-83dd-3d450ed53c33.txt -b79f42dcdf03ed4ca5e9e35ec9e6c493 TCGA-ESCA/mRNA__geneExp__FPKM/TCGA-L5-A4OI-01A-11R-A36D-31.ca91e70a-07b9-4a00-829a-3f90da996128.txt -b81032f6ab2ab2e7c357ba1f0bc18828 TCGA-SKCM/clinical__biospecimen/TCGA-D3-A3C7.192bbf1c-4f69-463c-b9ec-8d7827c8312a.txt -b825e981683e4f4c9764f900d67f010a TCGA-ESCA/SNV__mutect/c7fe427a-b447-4840-8cd1-fe33a236dfe7.maf.txt -bcf112df1a329b57f9da2348a51302b2 TCGA-BLCA/SNV__mutect/TCGA-BL-A13J-01A-11D-A271-08.60fafc48-e348-411e-ac9d-869043bad259.maf.txt -c024e2aab3d2c7a5b8ae09b883ac29fc TCGA-ESCA/CNV__snp6/TCGA-L5-A4OI-11A-11D-A25X-01.62575d54-e8af-4c17-a752-c0a42d0323ab.txt -c19cc99c8470d54577020f671d9c4415 TCGA-BLCA/CNV__snp6/TCGA-BL-A0C8-01A-11D-A10T-01.a365ccb8-1e55-478b-b23c-26aa225d7adc.txt -c20fb780462f127c7debafd1b8cd048e TCGA-SKCM/methylation__HM450/TCGA-D3-A3C7-06A-11D-A19B-05.2db5c7cc-25f8-4d93-991f-173b8704cb14.data.txt -c2ae07d259470ac8fca16af834ac4b3e TCGA-BLCA/CNV__unfiltered__snp6/TCGA-BL-A0C8-10A-01D-A273-01.ac9ce61f-7250-485a-92c4-54e7b594bbc3.txt -c6fe3bedf019fe9a80d92db0b6861d12 TCGA-BLCA/mRNA__geneExp__FPKM/TCGA-BL-A0C8-01A-11R-A10U-07.0a360b17-8286-46d5-9379-211a1a90c546.txt -c7400bbd90c96a3027f79954326f02f5 TCGA-BLCA/mRNA__geneExpNormed__FPKM/TCGA-BL-A0C8-01B-04R-A277-07.8290f9c4-6cb2-4e6a-bee3-2e0d26818ee2.txt -c7b736b11e87dae239b7680cb9762ac0 TCGA-BLCA/CNV__unfiltered__snp6/TCGA-BL-A13J-10A-01D-A273-01.045dae18-56ff-460f-9180-2fe17896044a.txt -c80400410ff744572c5d5ff085105d6e TCGA-BLCA/miR__isoformExp/TCGA-BL-A0C8-01A-11R-A27D-13.7aeee345-da92-49ff-8e87-be1af0005a67.txt -c82c0a393c55b606a307e5da51f99d5c TCGA-BLCA/mRNA__geneExpNormed__FPKM/TCGA-BL-A0C8-01A-11R-A10U-07.3d2db206-336e-4f2b-9109-f0b14460f6f3.txt -c83b814ebf9c35598ffe3719d6995be1 TCGA-ESCA/miR__isoformExp/TCGA-L5-A4OI-01A-11R-A261-13.fceae8cb-64f4-4600-9d45-75868870940b.txt -ca1d461dfe013b120dfa83e1d80498f1 TCGA-BLCA/mRNA__counts__FPKM/TCGA-BL-A13I-01A-11R-A13Y-07.8c6ffe1d-a2c4-4c94-a8b9-b8c5936223e7.txt -caee4de6f5a35e8591812580e8057f3b TCGA-SKCM/mRNA__geneExp__FPKM/TCGA-EE-A3J8-06A-11R-A20F-07.662e5a74-9217-413e-8321-07951d802b8a.txt -cc7bc9de21719f07942549bfe79f06ad TCGA-ESCA/mRNA__geneExpNormed__FPKM/TCGA-IG-A3YB-01A-11R-A36D-31.3cf7418d-39a9-4e53-9136-1dbe8df9f1a6.txt -cc880add1adbf07234693fa31613355c TCGA-ESCA/methylation__HM450/TCGA-IG-A3YB-01A-11D-A249-05.c7d718c2-750a-4f65-b3c6-aa3d23ff3947.data.txt -cce68e3013c9df5a2064b6ba817e4a5c TCGA-BLCA/mRNA__geneExp__FPKM/TCGA-BL-A13J-01A-11R-A10U-07.5b902084-dcfc-4b37-a411-4a1db76ed61d.txt -ccf02012177da94c9c9d9eaaa20289ab TCGA-ESCA/CNV__unfiltered__snp6/TCGA-IG-A3YB-01A-11D-A246-01.7789cfd4-2eab-416b-b3d6-28aa6db61e98.txt -cd838d2faacf8b1e6e2596bf810d1563 TCGA-ESCA/clinical__primary/TCGA-IG-A3YB.c1aa26ce-a85d-4266-8758-90e56a7533ea.txt -ce7c551383a25ed4d171d65234cdee40 TCGA-ACC/CNV__unfiltered__snp6/TCGA-OR-A5K2-01A-11D-A29H-01.b0ef98ef-b83b-4f51-9099-a9602f3c7e32.txt -d081669e00517b36267e8b168f4cc78d TCGA-ESCA/CNV__unfiltered__snp6/TCGA-IG-A3YB-10A-01D-A246-01.a22ec975-483d-4a5d-92ba-5762f246d741.txt -d3643e5416df9b277a67df487014d92a TCGA-BLCA/clinical__primary/TCGA-BL-A0C8.2fade937-3246-4ca0-bb2b-97eff0e246dd.txt -d9f3e2dddf5b42e0911499ff067e204d TCGA-BLCA/methylation__HM450/TCGA-BL-A13J-01B-04D-A276-05.8e2df3f9-f647-4438-b4a9-ac044f961d8c.data.txt -dac6185d55b49bb35317190025a68e18 TCGA-BLCA/miR__isoformExp/TCGA-BL-A13J-01B-04R-A27D-13.28f725f8-b144-4258-9f0b-df52c50819b7.txt -db495c9494ad0a0a2903ccc5da54157b TCGA-BLCA/miR__isoformExp/TCGA-BL-A13I-01A-11R-A27D-13.80a76d38-63b7-4d36-b32d-d8ee992eacc4.txt -df1bc9580121e6a072f480a269d53ac1 TCGA-BLCA/mRNA__counts__FPKM/TCGA-BL-A0C8-01A-11R-A277-07.f832dfd0-f52e-4835-8ae1-144a171e922f.txt -e18af71d69eeb70c581940d3f43b12ae TCGA-ACC/SNV__mutect/ac3a9f5a-d78e-4b13-acb8-1001b215ffb6.maf.txt -e2a70c0dfec6e0102f1a46a387b5a8fe TCGA-ACC/SNV__mutect/TCGA-OR-A5K2-01A-11D-A29I-10.ac3a9f5a-d78e-4b13-acb8-1001b215ffb6.maf.txt -e3bdb7372014a1ec351ca4b5c1ca879a TCGA-BLCA/miR__geneExp/TCGA-BL-A13I-01A-11R-A13X-13.9f368f1b-84bf-4064-a2fa-8a235afb44dd.txt -e5ec6f9a962575fe8698a9521d886ce0 TCGA-BLCA/CNV__snp6/TCGA-BL-A13I-11A-11D-A13V-01.3afc33aa-f792-4bcb-8b14-17f3e92694c9.txt -e65b4c5ccbeef8cb23479eaf1397f00f TCGA-BLCA/clinical__biospecimen/TCGA-BL-A0C8.3cb15754-bc4a-433f-9ee4-201fe1de91c6.txt -e6a3c9d1fc36effb00445b97afa28f64 TCGA-BLCA/mRNA__counts__FPKM/TCGA-BL-A0C8-01B-04R-A277-07.46c1de22-9e01-4ce1-88fc-aee293424302.txt -e73da21a1eb8ea3af393b2c9796b3074 TCGA-ACC/miR__isoformExp/TCGA-OR-A5K2-01A-11R-A29W-13.bd4a4c2d-a65f-4a70-8913-b9ce5cdf3708.txt -e85c93c495d5d42b5162db2bef911636 TCGA-SKCM/mRNA__geneExp__FPKM/TCGA-D3-A3C7-06A-11R-A18U-07.28cec425-f067-4008-9aa0-1a5cd689ff4f.txt -ebbcd53e95f4ba514c77be007615b585 TCGA-BLCA/SNV__mutect/TCGA-BL-A13I-01A-11D-A271-08.60fafc48-e348-411e-ac9d-869043bad259.maf.txt -ed7154c2bc5a0d559f5fc86eb5872a4e TCGA-ESCA/clinical__biospecimen/TCGA-L5-A4OI.0815e9e1-5e21-483b-adcc-dc1e6b6c66e9.txt -ee76ec36d26599cd62f2c39e86e4065b TCGA-BLCA/CNV__snp6/TCGA-BL-A0C8-10A-01D-A273-01.b4d48e92-4fec-4383-a404-4932dee54855.txt -ef62275937628e1d863378818ba52dc3 TCGA-BLCA/mRNA__counts__FPKM/TCGA-BL-A0C8-01A-11R-A10U-07.20976445-b2a0-45ad-a89a-9273938727c6.txt -f0bd2aa3b27fef6e10889e4252ed5d53 TCGA-ACC/CNV__unfiltered__snp6/TCGA-OR-A5L1-10A-01D-A309-01.7c263070-5b38-4d8c-9a31-899e1ba9d91d.txt -f1397f37379824203b11899c3dede75f TCGA-BLCA/methylation__HM450/TCGA-BL-A13J-01A-11D-A276-05.ec0334f7-076e-4382-ba6f-d5860388d634.data.txt -f204f22e867a523237bd435414d2dfc2 TCGA-BLCA/miR__geneExp/TCGA-BL-A0C8-01B-04R-A27D-13.f7c40164-425e-4447-a3c8-06092fb2c2d2.txt -f2622f4357f9e4e37b2a8a8cf4f8491e TCGA-ACC/miR__geneExp/TCGA-OR-A5K2-01A-11R-A29W-13.c2264cc3-ffa7-41d4-85c8-f127677b5a6a.txt -f36443195d5bb93156551295b7e0cf18 TCGA-SKCM/mRNA__counts__FPKM/TCGA-D3-A3C7-06A-11R-A18U-07.778eed3d-02ad-43c3-8308-0c4823922c39.txt -f597fe52bf6389f7a8fd57409b012ff9 TCGA-BLCA/clinical__primary/TCGA-BL-A13J.e9ac8aef-d3f4-44be-8f53-5c40596a7ea1.txt -f8f577b33f248abe31cb1de45ce4fdeb TCGA-BLCA/mRNA__geneExpNormed__FPKM/TCGA-BL-A13J-01B-04R-A277-07.48cbddd1-461d-4d07-bfea-237fb7c295ff.txt -f927200b8681898f917bcf2a8d2a88c7 TCGA-BLCA/CNV__snp6/TCGA-BL-A0C8-01A-11D-A273-01.d3f916ac-0306-478e-ad52-b926fd39e0fa.txt -fab660439a383bc8b6b4864e735c2e46 TCGA-BLCA/CNV__snp6/TCGA-BL-A13J-10A-01D-A273-01.960fbcd2-469d-41be-bbcf-c8b3a106faba.txt -fb51aa6d1e3ed82c12d25d2f0120f267 TCGA-ACC/CNV__snp6/TCGA-OR-A5L1-10A-01D-A309-01.818e8b0a-04a7-42e5-929c-b9d11c64d1a9.txt -fb5b8538830d6722e10050a90ecc810b TCGA-BLCA/clinical__biospecimen/TCGA-BL-A13J.0995844b-7d08-49f8-9e55-d39327e61dbd.txt -fc33c56272d39f9a77ba5081a0225b33 TCGA-BLCA/mRNA__geneExpNormed__FPKM/TCGA-BL-A13J-01A-11R-A10U-07.827bacb7-49c2-4ce9-9cf5-6d21d290aec8.txt -fc5cd6e6c0e0aa1cbf1d9e3bd5caf6a3 TCGA-BLCA/mRNA__geneExp__FPKM/TCGA-BL-A0C8-01A-11R-A277-07.d638b334-c28d-47c8-8c55-a7d0d00918b7.txt -fe76fb5d321a0be08a1c281ee11205f4 TCGA-ESCA/miR__isoformExp/TCGA-L5-A4OI-01A-11R-A360-13.1ad2ad46-c472-467c-9196-2644eec1b888.txt -feef6c8a62d8a4ee423be172efea40a4 TCGA-BLCA/CNV__unfiltered__snp6/TCGA-BL-A13I-01A-11D-A13V-01.665f04c6-af06-4935-bc00-8f278560ddf0.txt -ffe3acb516cd93475f85d5586056ab59 TCGA-ESCA/mRNA__geneExpNormed__FPKM/TCGA-L5-A4OI-01A-11R-A36D-31.86602ac3-747a-477f-86cf-e24a314e6b35.txt +062d34020b3242dc793cb033cacd5bd4 TCGA-ESCA/methylation__HM450/TCGA-L5-A4OI-11A-11D-A265-05.20048f6e-2f05-4029-af70-a664411f0fe7.data.txt +083b74104a4d41a2b86e4826c6b4f726 TCGA-BLCA/miR__geneExp/TCGA-BL-A13J-01A-11R-A27D-13.890319d9-6015-4909-9cc8-9c1ddca57594.txt +0a0d63a180b57526aecbc10f11649156 TCGA-ESCA/SNV__somaticsniper/TCGA-L5-A4OI-01A-11D-A27G-09.56890408-24a5-4b5a-b822-aaf872c057b8.maf.txt +0baa0293248f722c449a8dcf37b71921 TCGA-BLCA/clinical__biospecimen/TCGA-BL-A13I.58652642-a3b5-432a-9b31-5a19cdb3ca57.txt +0e6965b6d3e19d7980bc725d1ab24c42 TCGA-ESCA/SNV__varscan/TCGA-IG-A3YB-01A-11D-A247-09.9dab6855-ba5e-4afb-b3a0-f034a6f82eb2.maf.txt +0f7a6227b6a8487e560987080127aa36 TCGA-SKCM/CNV__snp6/TCGA-D3-A3C7-10A-01D-A195-01.0a4bab0b-00f6-4f13-a1e6-31c20b2c16d6.txt +102a70dbc7cf0fb3e82d2f67d4fc1930 TCGA-ACC/methylation__HM450/TCGA-OR-A5K2-01A-11D-A29J-05.c5a36e2a-33cd-484a-91db-4f030a5f5415.data.txt +112134bb595f54a643047375f480eec5 TCGA-ESCA/miR__isoformExp/TCGA-IG-A3YB-01A-11R-A24L-13.e80ec825-2da2-4fa3-a42e-afaf4a18d9bf.txt +12762a0ec28570817a695ed0f591ca87 TCGA-ACC/clinical__biospecimen/TCGA-OR-A5K2.2fde5970-89ee-46d3-ad62-8172804ca952.txt +128d550feab7b613334fad401b35c4d2 TCGA-SKCM/SNV__mutect/TCGA-D3-A3C7-06A-11D-A196-08.7d62b913-4ae8-4c59-9819-71711f12b3b2.maf.txt +13d36b29346343631bf953bc3a4df229 TCGA-BLCA/CNV__unfiltered__snp6/TCGA-BL-A13I-11A-11D-A13V-01.1c6ceb91-6775-4b39-a4c2-603bdee5b4df.txt +14bd9f76abc1d571b42c2435ecd5a26e TCGA-BLCA/miR__isoformExp/TCGA-BL-A13I-01B-04R-A27D-13.3bf77f03-b4bf-4425-aac5-aa14545b1281.txt +14c1ffa80aa11a2f7fd1ae2907831cad TCGA-ACC/CNV__unfiltered__snp6/TCGA-OR-A5L1-01A-11D-A309-01.477185ad-aafa-4da0-be72-780bd66fb6cd.txt +1551cb4166696b5f3db78c020aaeecfc TCGA-BLCA/miR__isoformExp/TCGA-BL-A13J-01A-11R-A10V-13.42616e6e-2d5c-497e-afe0-b2528ec48486.txt +15f673f5522dd577c592502b6aca3dc4 TCGA-BLCA/mRNA__geneExp__FPKM/TCGA-BL-A13J-01A-11R-A277-07.30f7c07d-32f3-4148-9309-21a193bae631.txt +196990803691564c5083d954ed611f85 TCGA-SKCM/miR__isoformExp/TCGA-D3-A3C7-06A-11R-A18X-13.65fb92ff-5b86-424c-8d3f-39444e2bf3e5.txt +19babe0242f4388422b23ccb196cc6d4 TCGA-ESCA/CNV__unfiltered__snp6/TCGA-L5-A4OI-01A-11D-A25X-01.92990d84-9f3c-46d6-89ab-fb631dd4139f.txt +1a1e2d8629af0f483c061c04dedb5952 TCGA-ESCA/methylation__HM450/TCGA-L5-A4OI-01A-11D-A265-05.09f09483-ca1b-4cc6-9d4f-784d22471df7.data.txt +1c56ccb95bf7d6c41bce1e170011ecb6 TCGA-BLCA/SNV__somaticsniper/TCGA-BL-A13J-01A-11D-A271-08.17350cc9-f9ae-48c2-8663-25d794e873d1.maf.txt +1d30263e219b95ffe4650606c2875ff2 TCGA-BLCA/SNV__mutect/TCGA-BL-A13J-01A-11D-A271-08.0e239d8f-47b0-4e47-9716-e9ecc87605b9.maf.txt +1e60bd6c65a4552b396492e142afea0b TCGA-BLCA/CNV__snp6/TCGA-BL-A13J-01A-11D-A273-01.c063b466-b9d8-49c2-a39f-100770375d8f.txt +1f64a6b4a360e8df40d6fee318ac7521 TCGA-SKCM/SNV__varscan/TCGA-EE-A3J8-06A-11D-A20D-08.6c961926-7792-42fa-9a16-c62f60e2557b.maf.txt +1f8c0074064847b977bbc87836b84951 TCGA-ESCA/SNV__somaticsniper/56890408-24a5-4b5a-b822-aaf872c057b8.maf.txt +216094a130189bf4c2a90f6bf3b2fa9b TCGA-BLCA/methylation__HM450/TCGA-BL-A0C8-01A-11D-A10W-05.f0aa1e07-3c84-4ace-a078-e398c21ab1fc.data.txt +216d2739ed826968c8c0ff7ee6a9de62 TCGA-ACC/SNV__mutect/TCGA-OR-A5L1-01A-11D-A30A-10.81ac2c46-37db-4dcd-923a-061a7ae626a3.maf.txt +22d0ae2785a2ad29ad4f3235a0425bcf TCGA-ACC/CNV__unfiltered__snp6/TCGA-OR-A5K2-10B-01D-A29K-01.a774d500-8c68-4071-a3b1-328f346b417c.txt +24e038ab5c968d7b68d97e824e3b0790 TCGA-SKCM/SNV__mutect/TCGA-EE-A3J8-06A-11D-A20D-08.7d62b913-4ae8-4c59-9819-71711f12b3b2.maf.txt +282418ae56e5bb9477ab13e282f7f6d7 TCGA-ESCA/SNV__mutect/7f8e1e7c-621c-4dfd-8fad-af07c739dbfc.maf.txt +283be73273f6241c443870e11bfab58a TCGA-BLCA/mRNA__geneExpNormed__FPKM/TCGA-BL-A13I-01A-11R-A13Y-07.c257ac08-6ed2-4e7f-8733-d946be1c6d5c.txt +28d71455d82579a23875cb0e7711e2a9 TCGA-SKCM/CNV__snp6/TCGA-D3-A3C7-06A-11D-A194-01.6ee6e045-fe18-4e98-bd7f-9bf133605bc4.txt +2abc5e76d0fcae67942b6cdd45b2eaff TCGA-ESCA/SNV__muse/TCGA-IG-A3YB-01A-11D-A247-09.b267fee6-e9a0-4d50-88fb-79eb8da1e8dd.maf.txt +2b561e95d8b84e5785be62d1765c4871 TCGA-BLCA/miR__geneExp/TCGA-BL-A13J-11A-13R-A10V-13.42d7b4b3-e2c8-4117-ab8f-4762238084f4.txt +2beebd9031b3b58e0018091ea5a27565 TCGA-ESCA/miR__geneExp/TCGA-IG-A3YB-01A-11R-A24L-13.7622ed32-0f43-425f-b4b2-4087c0bb64a7.txt +2db1e56bdafd07251870afbf14f3c8dd TCGA-ACC/SNV__muse/TCGA-OR-A5L1-01A-11D-A30A-10.9d298cc7-71d2-43f5-835d-d7ef7a43bb11.maf.txt +2db6f5d94dae082b9d7618f904f2e332 TCGA-ESCA/SNV__mutect/TCGA-IG-A3YB-01A-11D-A247-09.c7fe427a-b447-4840-8cd1-fe33a236dfe7.maf.txt +2e5d91690de679f1f68ed284a69f72ec TCGA-BLCA/methylation__HM450/TCGA-BL-A13I-01B-04D-A276-05.79e66bef-80a0-42c8-8e35-00687018b4b0.data.txt +2f00a3baa579bfa1db4143daa8d77618 TCGA-SKCM/mRNA__counts__FPKM/TCGA-EE-A3J8-06A-11R-A20F-07.9c488510-a229-45e9-b708-0b666c257dbc.txt +2f60a86ca3f10b50da04864182b567e9 TCGA-BLCA/SNV__somaticsniper/17350cc9-f9ae-48c2-8663-25d794e873d1.maf.txt +30e4f3f556b5abc8858597e20b58a746 TCGA-ACC/SNV__mutect/TCGA-OR-A5K2-01A-11D-A29I-10.81ac2c46-37db-4dcd-923a-061a7ae626a3.maf.txt +3190bb04377e06b6023abff96d55c2cf TCGA-ESCA/SNV__varscan/TCGA-L5-A4OI-01A-11D-A27G-09.9dab6855-ba5e-4afb-b3a0-f034a6f82eb2.maf.txt +338cd5adbdf7a6cd61e9cd8ce1eb5cfd TCGA-ESCA/CNV__unfiltered__snp6/TCGA-L5-A4OI-11A-11D-A25X-01.57dd98d2-a674-4b94-8a51-60b3e32f0a14.txt +34d75fa6cf0386d2493368307a088da2 TCGA-ACC/SNV__mutect/TCGA-OR-A5L1-01A-11D-A30A-10.ac3a9f5a-d78e-4b13-acb8-1001b215ffb6.maf.txt +355b5dde78ddcb0dff2efe691753e7a9 TCGA-BLCA/SNV__varscan/TCGA-BL-A0C8-01A-11D-A271-08.4a755399-e5b5-4d0e-b1e3-dae24b81590e.maf.txt +35d339c2f9e971addbe84c0a93a48bf9 TCGA-SKCM/SNV__mutect/7d62b913-4ae8-4c59-9819-71711f12b3b2.maf.txt +365e2c5dd77cac3240e560f3482c45fd TCGA-BLCA/CNV__unfiltered__snp6/TCGA-BL-A0C8-01A-11D-A273-01.4b8e94e8-c2a6-4cfc-a638-6df616d9f374.txt +38f4692821fbf791ddf33b1688061473 TCGA-BLCA/mRNA__counts__FPKM/TCGA-BL-A13I-01A-11R-A277-07.62981652-048b-4a40-8687-736024c7c0a1.txt +39a922fcb450ba07960c1860bc3dd0a2 TCGA-BLCA/mRNA__geneExp__FPKM/TCGA-BL-A13J-01B-04R-A277-07.e8e1abd1-9fa2-4d5b-899c-0fba5ef14ef1.txt +3a40d924f8424dfe0bb43e6e88b7528b TCGA-SKCM/miR__geneExp/TCGA-D3-A3C7-06A-11R-A18X-13.05f6b2f8-6aaf-468f-a5fa-96f1ab5c0d43.txt +3bcbbef0149c3cb96b0677f2fa2f0b01 TCGA-BLCA/SNV__mutect/TCGA-BL-A0C8-01A-11D-A271-08.0e239d8f-47b0-4e47-9716-e9ecc87605b9.maf.txt +3c24c0445b3c06583ae0d5dd93baae57 TCGA-ESCA/clinical__primary/TCGA-L5-A4OI.4e183835-3efe-4f3d-ace0-a91df43bde60.txt +3ddcc8d022094335aadcdf4df4c65169 TCGA-ESCA/CNV__snp6/TCGA-IG-A3YB-10A-01D-A246-01.9fe8b124-43df-4de7-bb93-89832dcce477.txt +3e3ccd5e7f0d31f24ff0ce91a2c17ae6 TCGA-SKCM/SNV__mutect/TCGA-D3-A3C7-06A-11D-A196-08.4b7a5729-b83e-4837-9b61-a6002dce1c0a.maf.txt +3e402fa67c3ae8ca6e2873a32a665dd8 TCGA-SKCM/miR__isoformExp/TCGA-EE-A3J8-06A-11R-A20E-13.ff62bfa3-ff36-4d41-84ed-debe33e62560.txt +3f272087fe953347dadf6952e5f5fe57 TCGA-ESCA/SNV__somaticsniper/TCGA-IG-A3YB-01A-11D-A247-09.56890408-24a5-4b5a-b822-aaf872c057b8.maf.txt +3fc6145795198f20237cc4d9602fbad1 TCGA-BLCA/CNV__unfiltered__snp6/TCGA-BL-A0C8-10A-01D-A10T-01.78c8db33-052b-45d7-b525-013003bd5e66.txt +44dd315ae0ed70c3f5046875b30fb7a9 TCGA-ESCA/miR__geneExp/TCGA-L5-A4OI-01A-11R-A360-13.9188849d-43eb-4f4d-a796-f3513db9cf6f.txt +45025b71a3f2c2191b8af189b2c4d1ae TCGA-SKCM/SNV__mutect/TCGA-EE-A3J8-06A-11D-A20D-08.4b7a5729-b83e-4837-9b61-a6002dce1c0a.maf.txt +45529cfe9f84e750f2d827dbde91455e TCGA-BLCA/methylation__HM450/TCGA-BL-A0C8-01A-11D-A276-05.f26962a4-1d81-4674-9d74-c256a125aa46.data.txt +45e5edb46fcc420c93573a975c7af473 TCGA-ACC/SNV__somaticsniper/TCGA-OR-A5L1-01A-11D-A30A-10.422bff06-f1b2-4768-be4a-8bcb82644ce2.maf.txt +467c217f00820d2f609cf174a42c8927 TCGA-BLCA/mRNA__counts__FPKM/TCGA-BL-A13J-01A-11R-A10U-07.76530c44-7357-4193-bada-a4eea20e79fe.txt +47b90dc86625f5477f22f485c9871b39 TCGA-BLCA/SNV__varscan/4a755399-e5b5-4d0e-b1e3-dae24b81590e.maf.txt +4b4d6ee8bbd711cb19d640fdf1218045 TCGA-BLCA/miR__geneExp/TCGA-BL-A0C8-01A-11R-A10V-13.0656c281-e067-44a3-8070-9331327c60db.txt +4e2803ba3b67365dbacda942dd29a599 TCGA-BLCA/miR__isoformExp/TCGA-BL-A0C8-01B-04R-A27D-13.09097819-2bae-433e-9cf9-44bc3ae50d34.txt +4f4f8fa76e2cbd6a4fd0e4d28a28f001 TCGA-ACC/SNV__somaticsniper/422bff06-f1b2-4768-be4a-8bcb82644ce2.maf.txt +4f83a984e5038503b7365beff2ff7a9e TCGA-BLCA/mRNA__geneExpNormed__FPKM/TCGA-BL-A13J-01A-11R-A277-07.1342191b-e6b6-4a1e-b189-05b1d4e79474.txt +4f8a0f47321051cfa14b2212dc7575e1 TCGA-BLCA/mRNA__geneExp__FPKM/TCGA-BL-A13I-01A-11R-A13Y-07.a5134a99-7364-4164-bfaa-4867a9cb54df.txt +5031e96f96e2174b6a61406cad4110b1 TCGA-SKCM/clinical__primary/TCGA-D3-A3C7.51c48680-6b80-4722-a06d-bdcc6e84c087.txt +5207a22da34adeb0a98b7fb662990ce0 TCGA-SKCM/methylation__HM450/TCGA-EE-A3J8-06A-11D-A211-05.342836f4-b506-4bf8-a1f6-949ce9cb17dc.data.txt +535808949c13014ae9d1ee7d9601037a TCGA-ACC/SNV__varscan/TCGA-OR-A5K2-01A-11D-A29I-10.747f92d2-3208-49cc-a564-3c5d0a2697ef.maf.txt +545d756287ec0fa06f4babbaba294b0d TCGA-BLCA/methylation__HM450/TCGA-BL-A13I-01A-11D-A276-05.2e6821ed-8e54-4b8f-8a3e-581bb8eae81a.data.txt +54e1b41f10e449df6f1c910632c6041e TCGA-BLCA/CNV__snp6/TCGA-BL-A0C8-01B-04D-A273-01.5437d647-67ef-473a-ad5a-68a0fbe8e784.txt +54eaac869eeace8feb3ea48c801558c6 TCGA-BLCA/mRNA__counts__FPKM/TCGA-BL-A13J-01A-11R-A277-07.e5b4565c-9e79-4226-b106-29cf7f8f4a94.txt +55f516130f54afac70559c4bc9b78377 TCGA-BLCA/SNV__mutect/TCGA-BL-A13I-01A-11D-A271-08.0e239d8f-47b0-4e47-9716-e9ecc87605b9.maf.txt +57809e94bb477338c21ff0d731ff2375 TCGA-ESCA/miR__geneExp/TCGA-IG-A3YB-01A-11R-A360-13.d6c6aca1-4b04-4856-a3e4-adbd4bd33354.txt +581f9fcba684af259accf95d56a36b22 TCGA-BLCA/SNV__muse/TCGA-BL-A0C8-01A-11D-A10S-08.7ed5eb26-d52c-45c5-bfa1-e39f963007a8.maf.txt +581f9fcba684af259accf95d56a36b22 TCGA-BLCA/SNV__muse/TCGA-BL-A0C8-01B-04D-A271-08.7ed5eb26-d52c-45c5-bfa1-e39f963007a8.maf.txt +581f9fcba684af259accf95d56a36b22 TCGA-BLCA/SNV__muse/TCGA-BL-A13I-01A-11D-A13W-08.7ed5eb26-d52c-45c5-bfa1-e39f963007a8.maf.txt +581f9fcba684af259accf95d56a36b22 TCGA-BLCA/SNV__muse/TCGA-BL-A13I-01B-04D-A271-08.7ed5eb26-d52c-45c5-bfa1-e39f963007a8.maf.txt +581f9fcba684af259accf95d56a36b22 TCGA-BLCA/SNV__muse/TCGA-BL-A13J-01A-11D-A10S-08.7ed5eb26-d52c-45c5-bfa1-e39f963007a8.maf.txt +581f9fcba684af259accf95d56a36b22 TCGA-BLCA/SNV__muse/TCGA-BL-A13J-01B-04D-A271-08.7ed5eb26-d52c-45c5-bfa1-e39f963007a8.maf.txt +581f9fcba684af259accf95d56a36b22 TCGA-BLCA/SNV__mutect/TCGA-BL-A0C8-01A-11D-A10S-08.0e239d8f-47b0-4e47-9716-e9ecc87605b9.maf.txt +581f9fcba684af259accf95d56a36b22 TCGA-BLCA/SNV__mutect/TCGA-BL-A0C8-01B-04D-A271-08.0e239d8f-47b0-4e47-9716-e9ecc87605b9.maf.txt +581f9fcba684af259accf95d56a36b22 TCGA-BLCA/SNV__mutect/TCGA-BL-A13I-01A-11D-A13W-08.0e239d8f-47b0-4e47-9716-e9ecc87605b9.maf.txt +581f9fcba684af259accf95d56a36b22 TCGA-BLCA/SNV__mutect/TCGA-BL-A13I-01B-04D-A271-08.0e239d8f-47b0-4e47-9716-e9ecc87605b9.maf.txt +581f9fcba684af259accf95d56a36b22 TCGA-BLCA/SNV__mutect/TCGA-BL-A13J-01A-11D-A10S-08.0e239d8f-47b0-4e47-9716-e9ecc87605b9.maf.txt +581f9fcba684af259accf95d56a36b22 TCGA-BLCA/SNV__mutect/TCGA-BL-A13J-01B-04D-A271-08.0e239d8f-47b0-4e47-9716-e9ecc87605b9.maf.txt +581f9fcba684af259accf95d56a36b22 TCGA-BLCA/SNV__somaticsniper/TCGA-BL-A0C8-01A-11D-A10S-08.17350cc9-f9ae-48c2-8663-25d794e873d1.maf.txt +581f9fcba684af259accf95d56a36b22 TCGA-BLCA/SNV__somaticsniper/TCGA-BL-A0C8-01B-04D-A271-08.17350cc9-f9ae-48c2-8663-25d794e873d1.maf.txt +581f9fcba684af259accf95d56a36b22 TCGA-BLCA/SNV__somaticsniper/TCGA-BL-A13I-01A-11D-A13W-08.17350cc9-f9ae-48c2-8663-25d794e873d1.maf.txt +581f9fcba684af259accf95d56a36b22 TCGA-BLCA/SNV__somaticsniper/TCGA-BL-A13I-01B-04D-A271-08.17350cc9-f9ae-48c2-8663-25d794e873d1.maf.txt +581f9fcba684af259accf95d56a36b22 TCGA-BLCA/SNV__somaticsniper/TCGA-BL-A13J-01A-11D-A10S-08.17350cc9-f9ae-48c2-8663-25d794e873d1.maf.txt +581f9fcba684af259accf95d56a36b22 TCGA-BLCA/SNV__somaticsniper/TCGA-BL-A13J-01B-04D-A271-08.17350cc9-f9ae-48c2-8663-25d794e873d1.maf.txt +581f9fcba684af259accf95d56a36b22 TCGA-BLCA/SNV__varscan/TCGA-BL-A0C8-01A-11D-A10S-08.4a755399-e5b5-4d0e-b1e3-dae24b81590e.maf.txt +581f9fcba684af259accf95d56a36b22 TCGA-BLCA/SNV__varscan/TCGA-BL-A0C8-01B-04D-A271-08.4a755399-e5b5-4d0e-b1e3-dae24b81590e.maf.txt +581f9fcba684af259accf95d56a36b22 TCGA-BLCA/SNV__varscan/TCGA-BL-A13I-01A-11D-A13W-08.4a755399-e5b5-4d0e-b1e3-dae24b81590e.maf.txt +581f9fcba684af259accf95d56a36b22 TCGA-BLCA/SNV__varscan/TCGA-BL-A13I-01B-04D-A271-08.4a755399-e5b5-4d0e-b1e3-dae24b81590e.maf.txt +581f9fcba684af259accf95d56a36b22 TCGA-BLCA/SNV__varscan/TCGA-BL-A13J-01A-11D-A10S-08.4a755399-e5b5-4d0e-b1e3-dae24b81590e.maf.txt +581f9fcba684af259accf95d56a36b22 TCGA-BLCA/SNV__varscan/TCGA-BL-A13J-01B-04D-A271-08.4a755399-e5b5-4d0e-b1e3-dae24b81590e.maf.txt +5877edc6534a8ce466d6b1974f0f8038 TCGA-BLCA/CNV__unfiltered__snp6/TCGA-BL-A13J-01A-11D-A273-01.ae7bda94-c86a-4008-a593-2a31f4dbd1f6.txt +58e02eb7e44562827d85d8dfdd94a476 TCGA-SKCM/CNV__unfiltered__snp6/TCGA-EE-A3J8-06A-11D-A20B-01.bd0e36f9-88c5-4750-86d6-00ca853ce452.txt +592909c4699fca5d5c0af1168df03adc TCGA-ACC/mRNA__geneExp__FPKM/TCGA-OR-A5K2-01A-11R-A29S-07.cc530ddb-02c2-47aa-9f3e-a5c39af69c5c.txt +59502a07d9254ee049e2b3ff9c4f791c TCGA-BLCA/mRNA__geneExp__FPKM/TCGA-BL-A13I-01B-04R-A277-07.6e6131cf-fdea-452b-9b65-49d334a097e8.txt +59de7e6b51bdd48c452f262590412c08 TCGA-BLCA/CNV__snp6/TCGA-BL-A13J-01B-04D-A273-01.d898ddd7-0b48-41c8-aed9-3852cb4d42cb.txt +5a44a8c0e1c6ef0051864c628496962c TCGA-SKCM/CNV__unfiltered__snp6/TCGA-EE-A3J8-10A-01D-A20B-01.0dd468b0-4e9f-47a7-8594-10e9dc675d50.txt +5c434c537a88496cb00582451e10a0cd TCGA-BLCA/miR__geneExp/TCGA-BL-A0C8-01A-11R-A27D-13.17b8111c-cb88-4b7b-88f4-b04e39c34b74.txt +5e87b22af8f44c949dfb0182025f38eb TCGA-BLCA/CNV__snp6/TCGA-BL-A13J-10A-01D-A10T-01.56892be9-4a15-42de-8483-d45cdd86a2d8.txt +62179e78ab35ed07d9448a5369dc6bc3 TCGA-BLCA/mRNA__geneExpNormed__FPKM/TCGA-BL-A13J-11A-13R-A10U-07.3a460d44-54ce-49dc-8cb7-39071f42e696.txt +63fd347033ce17a93bf8bd9f5629be0d TCGA-ACC/CNV__snp6/TCGA-OR-A5K2-10B-01D-A29K-01.e5012a07-cbb0-4bb7-903c-5b706f2ea874.txt +64c37aea21507e370f058c7ddd7cadda TCGA-BLCA/miR__isoformExp/TCGA-BL-A13J-11A-13R-A10V-13.da775086-d722-42ad-b8a5-58f4316de8b3.txt +671e6ed58b84cfcbce2994b0535f3bca TCGA-SKCM/CNV__unfiltered__snp6/TCGA-D3-A3C7-06A-11D-A194-01.9dfcb350-d18e-4400-85e4-23b0a745931f.txt +675807bed83f0d9c43a3fb51401528d9 TCGA-ESCA/SNV__muse/b267fee6-e9a0-4d50-88fb-79eb8da1e8dd.maf.txt +675ce91f267289abd77e77400a9f0563 TCGA-ACC/mRNA__geneExpNormed__FPKM/TCGA-OR-A5K2-01A-11R-A29S-07.1cf80958-0f98-445b-b91c-eae101b8fb38.txt +6a418cf37ee98c742f55ca885f32fc9b TCGA-BLCA/mRNA__counts__FPKM/TCGA-BL-A13I-01B-04R-A277-07.d4ce3f7a-633a-4d24-95b5-953b2bfd1e9f.txt +6ac38bf5a98b72bbcd810d328e2b4893 TCGA-ESCA/SNV__muse/TCGA-L5-A4OI-01A-11D-A27G-09.b267fee6-e9a0-4d50-88fb-79eb8da1e8dd.maf.txt +6ce16fbe6c7fae62d9ad494f44fa2507 TCGA-ACC/SNV__somaticsniper/TCGA-OR-A5K2-01A-11D-A29I-10.422bff06-f1b2-4768-be4a-8bcb82644ce2.maf.txt +6d04a31d536d0910e79f13e7fa30e04b TCGA-SKCM/SNV__somaticsniper/b8ef7b54-adb8-4751-93bd-c26349be4252.maf.txt +6d15abfb6a80523a36d3bc309f53ccc6 TCGA-ACC/CNV__snp6/TCGA-OR-A5L1-01A-11D-A309-01.05a4633f-f012-43c0-90fd-268ad47f85b0.txt +6e2e8f9cd9cc2949b9e80f014c632ef3 TCGA-SKCM/SNV__muse/TCGA-D3-A3C7-06A-11D-A196-08.e433a47f-7281-42aa-8bba-0affd1eb6df0.maf.txt +71f52d6da5068db02fcf798adedc33be TCGA-SKCM/CNV__unfiltered__snp6/TCGA-D3-A3C7-10A-01D-A195-01.3d11f3d8-1fde-46ea-a962-187a56da4700.txt +73a2f0bf565818571d5aad15c3351fee TCGA-SKCM/miR__geneExp/TCGA-EE-A3J8-06A-11R-A20E-13.d20cacfb-6450-4e67-8d76-13befceb907e.txt +742a48701c46b20e94359e7c5db6462a TCGA-SKCM/CNV__snp6/TCGA-EE-A3J8-10A-01D-A20B-01.7ad67071-bc10-4430-bdf5-291b872609aa.txt +7526acb4279426e05f05d4242e824526 TCGA-BLCA/SNV__varscan/TCGA-BL-A13I-01A-11D-A271-08.4a755399-e5b5-4d0e-b1e3-dae24b81590e.maf.txt +765640ab3a90612b48bfa7ecbbe5da1b TCGA-ESCA/miR__geneExp/TCGA-L5-A4OI-01A-11R-A261-13.46956ae7-fed4-47a9-8b87-00356006ff92.txt +7672970245cabe45e4f0670dd9ffd248 TCGA-ESCA/mRNA__counts__FPKM/TCGA-IG-A3YB-01A-11R-A36D-31.6001e694-b12d-4338-84dd-7180cac79e15.txt +771ec011acd226e6992038cdd8e06f56 TCGA-SKCM/mRNA__geneExpNormed__FPKM/TCGA-D3-A3C7-06A-11R-A18U-07.c7992525-cdee-49fe-9b24-78db03a6c58d.txt +773510564c0c127df743cebcebecf81b TCGA-ACC/clinical__primary/TCGA-OR-A5K2.e3e4a2d6-e5d6-46ec-8cef-d5b15ca4d9e4.txt +79151f5d2db089738cc08f75f7efc385 TCGA-BLCA/mRNA__geneExpNormed__FPKM/TCGA-BL-A13I-01B-04R-A277-07.b1896668-90fc-407f-a53c-56c6510ad16e.txt +79a03956671d147168a6a824b108aa1b TCGA-BLCA/miR__isoformExp/TCGA-BL-A13I-01A-11R-A13X-13.574c8f0d-7619-4e1b-bf72-367c61d1f782.txt +7da7d3568e2aac0ac7419288da32fc90 TCGA-ACC/SNV__muse/TCGA-OR-A5K2-01A-11D-A29I-10.9d298cc7-71d2-43f5-835d-d7ef7a43bb11.maf.txt +7f08a8b7b4c8232867de511b99521f4b TCGA-BLCA/CNV__unfiltered__snp6/TCGA-BL-A13J-01A-11D-A10T-01.e21b5a9d-33ac-4779-a632-bf604a55d04f.txt +82d39d3045d2b08006c6b3b96d18aeeb TCGA-BLCA/mRNA__geneExp__FPKM/TCGA-BL-A0C8-01B-04R-A277-07.936c0db4-af45-4a2b-891a-dcde4a3897ed.txt +85da89686fc3c006a31794405e2cc2ab TCGA-ACC/mRNA__counts__FPKM/TCGA-OR-A5K2-01A-11R-A29S-07.76bfb639-1e16-4cf0-b280-a17305da2e13.txt +8698cc85ffad8f29500dcf0e79f22fbf TCGA-BLCA/CNV__snp6/TCGA-BL-A13I-01A-11D-A13V-01.b493298c-1b31-4e35-bd7f-d0e699e996fc.txt +86f7c59120019179b4196bbfd908dcca TCGA-SKCM/CNV__snp6/TCGA-EE-A3J8-06A-11D-A20B-01.3b10f099-c085-47de-813a-b1b0bb33f5a1.txt +87bbcb671e4e53e7c4b795cb268ace15 TCGA-BLCA/mRNA__geneExpNormed__FPKM/TCGA-BL-A13I-01A-11R-A277-07.901fa73e-da21-4f2c-9289-6d1240eefc9d.txt +87c431b86fdcf1a04c022bf884a90848 TCGA-BLCA/miR__geneExp/TCGA-BL-A13I-01B-04R-A27D-13.dbfd82bc-40a9-45c1-87ff-ac6a1ce2a0e9.txt +889a19c6f55749b688f79645368ec395 TCGA-ESCA/SNV__mutect/TCGA-L5-A4OI-01A-11D-A27G-09.7f8e1e7c-621c-4dfd-8fad-af07c739dbfc.maf.txt +8ade7615261c36129467d9edb16323e3 TCGA-ESCA/CNV__snp6/TCGA-L5-A4OI-01A-11D-A25X-01.f904ee81-7611-48a1-9910-59c8a666330f.txt +8c62da607c88e134ee394fa1273baf14 TCGA-BLCA/miR__geneExp/TCGA-BL-A13J-01B-04R-A27D-13.9f5bbd0f-927b-426c-a734-d96effb97472.txt +8c6b404f808357a6417de4ad6df61cca TCGA-BLCA/miR__isoformExp/TCGA-BL-A0C8-01A-11R-A10V-13.8d9f295e-76e4-4cef-82f6-7f1af3b4d7f7.txt +8c87512d66b41c150f3ba0f8963750ad TCGA-ACC/clinical__biospecimen/TCGA-OR-A5L1.2c6c5c9b-2ac1-46aa-83ef-401cb9e20bfc.txt +8e868cd05fe074b44145ee09a23bd562 TCGA-ESCA/SNV__mutect/TCGA-L5-A4OI-01A-11D-A27G-09.c7fe427a-b447-4840-8cd1-fe33a236dfe7.maf.txt +8ff7d3108eec9fc4f32c44485b69216a TCGA-BLCA/methylation__HM450/TCGA-BL-A0C8-01B-04D-A276-05.4121d775-5546-4493-9b26-4fe1fd420469.data.txt +904297c95a7a22aad071f791133ec923 TCGA-ESCA/CNV__snp6/TCGA-IG-A3YB-01A-11D-A246-01.299a8a78-0da6-4f56-9d96-66413f9af000.txt +916421976a1b24da8f5abdb1f70292e2 TCGA-BLCA/SNV__muse/7ed5eb26-d52c-45c5-bfa1-e39f963007a8.maf.txt +925dee49ad94b65f4a5d8dcd88bcca44 TCGA-BLCA/clinical__primary/TCGA-BL-A13I.ffc75f8c-685c-4bcf-ac1d-8a04211e2376.txt +92a6daca25b702e7255d09c905cc7447 TCGA-BLCA/SNV__somaticsniper/TCGA-BL-A0C8-01A-11D-A271-08.17350cc9-f9ae-48c2-8663-25d794e873d1.maf.txt +92bd21bbe02f1047a68500998c0d6f68 TCGA-BLCA/SNV__mutect/0e239d8f-47b0-4e47-9716-e9ecc87605b9.maf.txt +94555e963a0c480571bde9da53cc59ac TCGA-BLCA/mRNA__geneExp__FPKM/TCGA-BL-A13I-01A-11R-A277-07.1edc7409-2d42-4d3e-89c8-3499bc364323.txt +9709f65589feea0e12d94803b53b524e TCGA-ACC/CNV__snp6/TCGA-OR-A5K2-01A-11D-A29H-01.dacf172e-89eb-4afa-9613-f683a558b088.txt +9b02da7278712c67749250bdf8607dec TCGA-BLCA/miR__geneExp/TCGA-BL-A13I-01A-11R-A27D-13.6f19f468-2594-454d-9fcd-b4db8cbcecf0.txt +9c4667b0f2cf275f456bfd2f46aa6ae0 TCGA-SKCM/mRNA__geneExpNormed__FPKM/TCGA-EE-A3J8-06A-11R-A20F-07.abc1a5a6-cd0b-450c-a650-dfe14fdb356b.txt +9c9df71a8face2c6ae40b77598d11d8f TCGA-BLCA/CNV__unfiltered__snp6/TCGA-BL-A0C8-01A-11D-A10T-01.642827c8-4b01-4b4e-9345-7d4f2843f714.txt +9cf3d4142a72ef165aa9d2e3ed1f73ac TCGA-SKCM/SNV__somaticsniper/TCGA-EE-A3J8-06A-11D-A20D-08.b8ef7b54-adb8-4751-93bd-c26349be4252.maf.txt +9d4cddd0a1adf126ec3aeb0e0cf87f87 TCGA-BLCA/methylation__HM450/TCGA-BL-A13I-01A-11D-A13Z-05.47c9b2e8-50fe-4433-8c04-fb0461db2509.data.txt +9def6c94dc5742d5739edf919a8ef703 TCGA-SKCM/clinical__primary/TCGA-EE-A3J8.151de1d5-6dc4-437e-be76-a076101939f5.txt +9fa5e0656263bf20406d6535fdb9b6f6 TCGA-BLCA/mRNA__geneExpNormed__FPKM/TCGA-BL-A0C8-01A-11R-A277-07.a69d254e-5222-4863-bbc2-5614e47504e8.txt +a0ad7c6f544bac41d9655dbd18582629 TCGA-SKCM/SNV__muse/e433a47f-7281-42aa-8bba-0affd1eb6df0.maf.txt +a4736f8056501d5a758929c3629a536b TCGA-ESCA/mRNA__geneExp__FPKM/TCGA-IG-A3YB-01A-11R-A36D-31.e0ed1b91-be78-4e80-9a2a-8faf99ffd78c.txt +a6766ad5710c00c589cbff493d3e43f7 TCGA-BLCA/CNV__unfiltered__snp6/TCGA-BL-A13J-01B-04D-A273-01.4922dd35-5ab8-4117-9f6f-2fba7ebc86b2.txt +a74f26f1ba2e366143ba9a893a613f09 TCGA-BLCA/methylation__HM450/TCGA-BL-A13J-01A-11D-A10W-05.cf119c4a-09a7-43ba-8264-7ff34bda6287.data.txt +a83fe2901f844199cdb933c6e35799cd TCGA-ESCA/clinical__biospecimen/TCGA-IG-A3YB.719ce235-bde8-4e97-af75-e0c679df992e.txt +a86653c82433a2a743b5b63181239083 TCGA-BLCA/miR__isoformExp/TCGA-BL-A13J-01A-11R-A27D-13.6924e6df-e8e4-4c29-8f09-d9171c775880.txt +a8df5280c15c17a40e8165de2db9dded TCGA-BLCA/mRNA__geneExp__FPKM/TCGA-BL-A13J-11A-13R-A10U-07.277e49dd-ae87-4b6a-91f2-121d47c6f330.txt +a95e6936f4182c5a1825c12be170b4c1 TCGA-ACC/SNV__varscan/747f92d2-3208-49cc-a564-3c5d0a2697ef.maf.txt +aa4864fb1ba4984e1837801f4eb4fb4d TCGA-BLCA/mRNA__counts__FPKM/TCGA-BL-A13J-11A-13R-A10U-07.48566693-0845-44b2-8612-4f713fee1bd7.txt +aa8ebd5b41fc927e2b7daa5d8f116a37 TCGA-ACC/clinical__primary/TCGA-OR-A5L1.dba7fa86-f439-4d98-8bc0-b5879dac0acc.txt +aaa5589b47e6bf7c5c4af85941bef5fd TCGA-BLCA/miR__geneExp/TCGA-BL-A13J-01A-11R-A10V-13.3b328a8d-2ee0-4429-87ac-fd0ddc60812c.txt +abfac06749980e8a6cf637bdaccfa0cc TCGA-BLCA/CNV__snp6/TCGA-BL-A13J-01A-11D-A10T-01.bdaf9cf7-4396-4af0-b6db-b80d549dceae.txt +ac2627120fcab20dce30a4cf7446e631 TCGA-ESCA/SNV__mutect/TCGA-IG-A3YB-01A-11D-A247-09.7f8e1e7c-621c-4dfd-8fad-af07c739dbfc.maf.txt +ac60e1bb7909af8e90203140be965b38 TCGA-ESCA/mRNA__counts__FPKM/TCGA-L5-A4OI-01A-11R-A36D-31.f1de94f8-4a68-4edd-b4f5-c3548aee6d0f.txt +ad3539c132dc5886a4d1b6b3006ebf3a TCGA-BLCA/CNV__unfiltered__snp6/TCGA-BL-A0C8-01B-04D-A273-01.df23eb3d-050f-4c67-b531-0c68509e4761.txt +af0c4f09aec4fc6cfc787d1a8cdbdf26 TCGA-BLCA/SNV__muse/TCGA-BL-A0C8-01A-11D-A271-08.7ed5eb26-d52c-45c5-bfa1-e39f963007a8.maf.txt +af55c37b646ffb78944e2f0af8fdf60b TCGA-ESCA/miR__isoformExp/TCGA-IG-A3YB-01A-11R-A360-13.f2947ffb-2d5c-4bca-8753-bfcc7d444319.txt +b18a75d3337d2c2d04ec1be665450d85 TCGA-BLCA/mRNA__counts__FPKM/TCGA-BL-A13J-01B-04R-A277-07.96ee0893-21d0-439f-af4a-9f40102483d6.txt +b4a07bcf3b58df3bd97ce0abe4b8c531 TCGA-BLCA/CNV__snp6/TCGA-BL-A0C8-10A-01D-A10T-01.a60d8205-8eb4-40d9-b203-507ae704fbbb.txt +b4ccfb8a3816ae77b2a8440766d3a574 TCGA-BLCA/methylation__HM450/TCGA-BL-A13J-11A-13D-A10W-05.416a338a-4d07-4134-be96-a660483f4d05.data.txt +b507c568679af10161ee41b4833542dd TCGA-SKCM/SNV__varscan/TCGA-D3-A3C7-06A-11D-A196-08.6c961926-7792-42fa-9a16-c62f60e2557b.maf.txt +b5d8b06369aa9bffcda2c7f5bde5851d TCGA-BLCA/CNV__unfiltered__snp6/TCGA-BL-A13J-10A-01D-A10T-01.0dee3246-0f12-4ee8-888e-75658bbb4a90.txt +b745b4ab9714a6866e5242fe3c7cdadc TCGA-SKCM/clinical__biospecimen/TCGA-EE-A3J8.b6b16c1b-e0c3-4e43-83dd-3d450ed53c33.txt +b79f42dcdf03ed4ca5e9e35ec9e6c493 TCGA-ESCA/mRNA__geneExp__FPKM/TCGA-L5-A4OI-01A-11R-A36D-31.ca91e70a-07b9-4a00-829a-3f90da996128.txt +b81032f6ab2ab2e7c357ba1f0bc18828 TCGA-SKCM/clinical__biospecimen/TCGA-D3-A3C7.192bbf1c-4f69-463c-b9ec-8d7827c8312a.txt +b825e981683e4f4c9764f900d67f010a TCGA-ESCA/SNV__mutect/c7fe427a-b447-4840-8cd1-fe33a236dfe7.maf.txt +ba1a466eb07087ea4e0250c4d0a5f5da TCGA-ACC/SNV__varscan/TCGA-OR-A5L1-01A-11D-A30A-10.747f92d2-3208-49cc-a564-3c5d0a2697ef.maf.txt +c024e2aab3d2c7a5b8ae09b883ac29fc TCGA-ESCA/CNV__snp6/TCGA-L5-A4OI-11A-11D-A25X-01.62575d54-e8af-4c17-a752-c0a42d0323ab.txt +c19cc99c8470d54577020f671d9c4415 TCGA-BLCA/CNV__snp6/TCGA-BL-A0C8-01A-11D-A10T-01.a365ccb8-1e55-478b-b23c-26aa225d7adc.txt +c20fb780462f127c7debafd1b8cd048e TCGA-SKCM/methylation__HM450/TCGA-D3-A3C7-06A-11D-A19B-05.2db5c7cc-25f8-4d93-991f-173b8704cb14.data.txt +c2ae07d259470ac8fca16af834ac4b3e TCGA-BLCA/CNV__unfiltered__snp6/TCGA-BL-A0C8-10A-01D-A273-01.ac9ce61f-7250-485a-92c4-54e7b594bbc3.txt +c6fe3bedf019fe9a80d92db0b6861d12 TCGA-BLCA/mRNA__geneExp__FPKM/TCGA-BL-A0C8-01A-11R-A10U-07.0a360b17-8286-46d5-9379-211a1a90c546.txt +c7400bbd90c96a3027f79954326f02f5 TCGA-BLCA/mRNA__geneExpNormed__FPKM/TCGA-BL-A0C8-01B-04R-A277-07.8290f9c4-6cb2-4e6a-bee3-2e0d26818ee2.txt +c7b736b11e87dae239b7680cb9762ac0 TCGA-BLCA/CNV__unfiltered__snp6/TCGA-BL-A13J-10A-01D-A273-01.045dae18-56ff-460f-9180-2fe17896044a.txt +c80400410ff744572c5d5ff085105d6e TCGA-BLCA/miR__isoformExp/TCGA-BL-A0C8-01A-11R-A27D-13.7aeee345-da92-49ff-8e87-be1af0005a67.txt +c82c0a393c55b606a307e5da51f99d5c TCGA-BLCA/mRNA__geneExpNormed__FPKM/TCGA-BL-A0C8-01A-11R-A10U-07.3d2db206-336e-4f2b-9109-f0b14460f6f3.txt +c83b814ebf9c35598ffe3719d6995be1 TCGA-ESCA/miR__isoformExp/TCGA-L5-A4OI-01A-11R-A261-13.fceae8cb-64f4-4600-9d45-75868870940b.txt +ca1d461dfe013b120dfa83e1d80498f1 TCGA-BLCA/mRNA__counts__FPKM/TCGA-BL-A13I-01A-11R-A13Y-07.8c6ffe1d-a2c4-4c94-a8b9-b8c5936223e7.txt +caee4de6f5a35e8591812580e8057f3b TCGA-SKCM/mRNA__geneExp__FPKM/TCGA-EE-A3J8-06A-11R-A20F-07.662e5a74-9217-413e-8321-07951d802b8a.txt +cc7bc9de21719f07942549bfe79f06ad TCGA-ESCA/mRNA__geneExpNormed__FPKM/TCGA-IG-A3YB-01A-11R-A36D-31.3cf7418d-39a9-4e53-9136-1dbe8df9f1a6.txt +cc880add1adbf07234693fa31613355c TCGA-ESCA/methylation__HM450/TCGA-IG-A3YB-01A-11D-A249-05.c7d718c2-750a-4f65-b3c6-aa3d23ff3947.data.txt +cce68e3013c9df5a2064b6ba817e4a5c TCGA-BLCA/mRNA__geneExp__FPKM/TCGA-BL-A13J-01A-11R-A10U-07.5b902084-dcfc-4b37-a411-4a1db76ed61d.txt +ccf02012177da94c9c9d9eaaa20289ab TCGA-ESCA/CNV__unfiltered__snp6/TCGA-IG-A3YB-01A-11D-A246-01.7789cfd4-2eab-416b-b3d6-28aa6db61e98.txt +cd838d2faacf8b1e6e2596bf810d1563 TCGA-ESCA/clinical__primary/TCGA-IG-A3YB.c1aa26ce-a85d-4266-8758-90e56a7533ea.txt +ce7c551383a25ed4d171d65234cdee40 TCGA-ACC/CNV__unfiltered__snp6/TCGA-OR-A5K2-01A-11D-A29H-01.b0ef98ef-b83b-4f51-9099-a9602f3c7e32.txt +d081669e00517b36267e8b168f4cc78d TCGA-ESCA/CNV__unfiltered__snp6/TCGA-IG-A3YB-10A-01D-A246-01.a22ec975-483d-4a5d-92ba-5762f246d741.txt +d3643e5416df9b277a67df487014d92a TCGA-BLCA/clinical__primary/TCGA-BL-A0C8.2fade937-3246-4ca0-bb2b-97eff0e246dd.txt +d40dfd738201c4bbcd5a2c8d331c56da TCGA-ACC/SNV__muse/9d298cc7-71d2-43f5-835d-d7ef7a43bb11.maf.txt +d450c156922133aae8be01f0e903a001 TCGA-ESCA/SNV__varscan/9dab6855-ba5e-4afb-b3a0-f034a6f82eb2.maf.txt +d9f3e2dddf5b42e0911499ff067e204d TCGA-BLCA/methylation__HM450/TCGA-BL-A13J-01B-04D-A276-05.8e2df3f9-f647-4438-b4a9-ac044f961d8c.data.txt +dac6185d55b49bb35317190025a68e18 TCGA-BLCA/miR__isoformExp/TCGA-BL-A13J-01B-04R-A27D-13.28f725f8-b144-4258-9f0b-df52c50819b7.txt +db495c9494ad0a0a2903ccc5da54157b TCGA-BLCA/miR__isoformExp/TCGA-BL-A13I-01A-11R-A27D-13.80a76d38-63b7-4d36-b32d-d8ee992eacc4.txt +df1bc9580121e6a072f480a269d53ac1 TCGA-BLCA/mRNA__counts__FPKM/TCGA-BL-A0C8-01A-11R-A277-07.f832dfd0-f52e-4835-8ae1-144a171e922f.txt +e075c59e4c56f84fb35e13fbd6e93414 TCGA-SKCM/SNV__somaticsniper/TCGA-D3-A3C7-06A-11D-A196-08.b8ef7b54-adb8-4751-93bd-c26349be4252.maf.txt +e18af71d69eeb70c581940d3f43b12ae TCGA-ACC/SNV__mutect/ac3a9f5a-d78e-4b13-acb8-1001b215ffb6.maf.txt +e288b8ec8f01f8bb28b9edb0ad836a08 TCGA-BLCA/SNV__muse/TCGA-BL-A13J-01A-11D-A271-08.7ed5eb26-d52c-45c5-bfa1-e39f963007a8.maf.txt +e2a70c0dfec6e0102f1a46a387b5a8fe TCGA-ACC/SNV__mutect/TCGA-OR-A5K2-01A-11D-A29I-10.ac3a9f5a-d78e-4b13-acb8-1001b215ffb6.maf.txt +e3bdb7372014a1ec351ca4b5c1ca879a TCGA-BLCA/miR__geneExp/TCGA-BL-A13I-01A-11R-A13X-13.9f368f1b-84bf-4064-a2fa-8a235afb44dd.txt +e5ec6f9a962575fe8698a9521d886ce0 TCGA-BLCA/CNV__snp6/TCGA-BL-A13I-11A-11D-A13V-01.3afc33aa-f792-4bcb-8b14-17f3e92694c9.txt +e65b4c5ccbeef8cb23479eaf1397f00f TCGA-BLCA/clinical__biospecimen/TCGA-BL-A0C8.3cb15754-bc4a-433f-9ee4-201fe1de91c6.txt +e6a3c9d1fc36effb00445b97afa28f64 TCGA-BLCA/mRNA__counts__FPKM/TCGA-BL-A0C8-01B-04R-A277-07.46c1de22-9e01-4ce1-88fc-aee293424302.txt +e7060c18a2b9e61bb4fd1e8b398e947f TCGA-ACC/SNV__mutect/81ac2c46-37db-4dcd-923a-061a7ae626a3.maf.txt +e73da21a1eb8ea3af393b2c9796b3074 TCGA-ACC/miR__isoformExp/TCGA-OR-A5K2-01A-11R-A29W-13.bd4a4c2d-a65f-4a70-8913-b9ce5cdf3708.txt +e85c93c495d5d42b5162db2bef911636 TCGA-SKCM/mRNA__geneExp__FPKM/TCGA-D3-A3C7-06A-11R-A18U-07.28cec425-f067-4008-9aa0-1a5cd689ff4f.txt +ea82dc24cc4a14596e2ce4aaec25668b TCGA-SKCM/SNV__muse/TCGA-EE-A3J8-06A-11D-A20D-08.e433a47f-7281-42aa-8bba-0affd1eb6df0.maf.txt +ed7154c2bc5a0d559f5fc86eb5872a4e TCGA-ESCA/clinical__biospecimen/TCGA-L5-A4OI.0815e9e1-5e21-483b-adcc-dc1e6b6c66e9.txt +ee442862e7e03a42d2c0db33246b9ffd TCGA-BLCA/SNV__somaticsniper/TCGA-BL-A13I-01A-11D-A271-08.17350cc9-f9ae-48c2-8663-25d794e873d1.maf.txt +ee76ec36d26599cd62f2c39e86e4065b TCGA-BLCA/CNV__snp6/TCGA-BL-A0C8-10A-01D-A273-01.b4d48e92-4fec-4383-a404-4932dee54855.txt +ef1459512c054826ef338901f73c64d9 TCGA-BLCA/SNV__muse/TCGA-BL-A13I-01A-11D-A271-08.7ed5eb26-d52c-45c5-bfa1-e39f963007a8.maf.txt +ef62275937628e1d863378818ba52dc3 TCGA-BLCA/mRNA__counts__FPKM/TCGA-BL-A0C8-01A-11R-A10U-07.20976445-b2a0-45ad-a89a-9273938727c6.txt +f0bd2aa3b27fef6e10889e4252ed5d53 TCGA-ACC/CNV__unfiltered__snp6/TCGA-OR-A5L1-10A-01D-A309-01.7c263070-5b38-4d8c-9a31-899e1ba9d91d.txt +f1397f37379824203b11899c3dede75f TCGA-BLCA/methylation__HM450/TCGA-BL-A13J-01A-11D-A276-05.ec0334f7-076e-4382-ba6f-d5860388d634.data.txt +f204f22e867a523237bd435414d2dfc2 TCGA-BLCA/miR__geneExp/TCGA-BL-A0C8-01B-04R-A27D-13.f7c40164-425e-4447-a3c8-06092fb2c2d2.txt +f2622f4357f9e4e37b2a8a8cf4f8491e TCGA-ACC/miR__geneExp/TCGA-OR-A5K2-01A-11R-A29W-13.c2264cc3-ffa7-41d4-85c8-f127677b5a6a.txt +f31917c94cbf5474ed0b311827464691 TCGA-SKCM/SNV__varscan/6c961926-7792-42fa-9a16-c62f60e2557b.maf.txt +f36443195d5bb93156551295b7e0cf18 TCGA-SKCM/mRNA__counts__FPKM/TCGA-D3-A3C7-06A-11R-A18U-07.778eed3d-02ad-43c3-8308-0c4823922c39.txt +f3aa7332dfdcdcff7e7e4d83a6aed735 TCGA-SKCM/SNV__mutect/4b7a5729-b83e-4837-9b61-a6002dce1c0a.maf.txt +f597fe52bf6389f7a8fd57409b012ff9 TCGA-BLCA/clinical__primary/TCGA-BL-A13J.e9ac8aef-d3f4-44be-8f53-5c40596a7ea1.txt +f82952907754b2da956f64a02233f0c1 TCGA-BLCA/SNV__varscan/TCGA-BL-A13J-01A-11D-A271-08.4a755399-e5b5-4d0e-b1e3-dae24b81590e.maf.txt +f8f577b33f248abe31cb1de45ce4fdeb TCGA-BLCA/mRNA__geneExpNormed__FPKM/TCGA-BL-A13J-01B-04R-A277-07.48cbddd1-461d-4d07-bfea-237fb7c295ff.txt +f927200b8681898f917bcf2a8d2a88c7 TCGA-BLCA/CNV__snp6/TCGA-BL-A0C8-01A-11D-A273-01.d3f916ac-0306-478e-ad52-b926fd39e0fa.txt +fab660439a383bc8b6b4864e735c2e46 TCGA-BLCA/CNV__snp6/TCGA-BL-A13J-10A-01D-A273-01.960fbcd2-469d-41be-bbcf-c8b3a106faba.txt +fb51aa6d1e3ed82c12d25d2f0120f267 TCGA-ACC/CNV__snp6/TCGA-OR-A5L1-10A-01D-A309-01.818e8b0a-04a7-42e5-929c-b9d11c64d1a9.txt +fb5b8538830d6722e10050a90ecc810b TCGA-BLCA/clinical__biospecimen/TCGA-BL-A13J.0995844b-7d08-49f8-9e55-d39327e61dbd.txt +fc33c56272d39f9a77ba5081a0225b33 TCGA-BLCA/mRNA__geneExpNormed__FPKM/TCGA-BL-A13J-01A-11R-A10U-07.827bacb7-49c2-4ce9-9cf5-6d21d290aec8.txt +fc5cd6e6c0e0aa1cbf1d9e3bd5caf6a3 TCGA-BLCA/mRNA__geneExp__FPKM/TCGA-BL-A0C8-01A-11R-A277-07.d638b334-c28d-47c8-8c55-a7d0d00918b7.txt +fe76fb5d321a0be08a1c281ee11205f4 TCGA-ESCA/miR__isoformExp/TCGA-L5-A4OI-01A-11R-A360-13.1ad2ad46-c472-467c-9196-2644eec1b888.txt +feef6c8a62d8a4ee423be172efea40a4 TCGA-BLCA/CNV__unfiltered__snp6/TCGA-BL-A13I-01A-11D-A13V-01.665f04c6-af06-4935-bc00-8f278560ddf0.txt +ffe3acb516cd93475f85d5586056ab59 TCGA-ESCA/mRNA__geneExpNormed__FPKM/TCGA-L5-A4OI-01A-11R-A36D-31.86602ac3-747a-477f-86cf-e24a314e6b35.txt diff --git a/tests/baselines/load-md5sums-google.txt b/tests/baselines/load-md5sums-google.txt index 4108375..9fd4fc0 100644 --- a/tests/baselines/load-md5sums-google.txt +++ b/tests/baselines/load-md5sums-google.txt @@ -1 +1 @@ -35e78e4919a02c9e14ba294db8241ccb load-munged.txt +2376270ba8546620fc7bb13b6a575762 load-munged.txt diff --git a/tests/baselines/load-md5sums.txt b/tests/baselines/load-md5sums.txt index 290c3d9..5b37530 100644 --- a/tests/baselines/load-md5sums.txt +++ b/tests/baselines/load-md5sums.txt @@ -1 +1 @@ -56fb72443b12fd11d16d3a92497e2f3a load-munged.txt +9227d7a702a984e46b15db9c9b8bbc83 load-munged.txt diff --git a/tests/baselines/mirror-files.txt b/tests/baselines/mirror-files.txt index c7243cb..624928f 100644 --- a/tests/baselines/mirror-files.txt +++ b/tests/baselines/mirror-files.txt @@ -11,10 +11,14 @@ TCGA-ACC/Copy_Number_Variation/Masked_Copy_Number_Segment/BLAIN_p_TCGA_282_304_b TCGA-ACC/Copy_Number_Variation/Masked_Copy_Number_Segment/GAMED_p_TCGA_B_312_313_314_NSP_GenomeWideSNP_6_E06_1361784.nocnv_grch38.seg.05a4633f-f012-43c0-90fd-268ad47f85b0.txt TCGA-ACC/Copy_Number_Variation/Masked_Copy_Number_Segment/GAMED_p_TCGA_B_312_313_314_NSP_GenomeWideSNP_6_E07_1361714.nocnv_grch38.seg.818e8b0a-04a7-42e5-929c-b9d11c64d1a9.txt TCGA-ACC/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_ACC.HumanMethylation450.1.lvl-3.TCGA-OR-A5K2-01A-11D-A29J-05.gdc_hg38.c5a36e2a-33cd-484a-91db-4f030a5f5415.txt +TCGA-ACC/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.ACC.muse.9d298cc7-71d2-43f5-835d-d7ef7a43bb11.DR-10.0.somatic.maf.9d298cc7-71d2-43f5-835d-d7ef7a43bb11.gz TCGA-ACC/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.ACC.muse.c9d7ed14-11a0-49b3-a17f-e843c2a5cd88.DR-7.0.somatic.maf.c9d7ed14-11a0-49b3-a17f-e843c2a5cd88.gz +TCGA-ACC/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.ACC.mutect.81ac2c46-37db-4dcd-923a-061a7ae626a3.DR-10.0.somatic.maf.81ac2c46-37db-4dcd-923a-061a7ae626a3.gz TCGA-ACC/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.ACC.mutect.ac3a9f5a-d78e-4b13-acb8-1001b215ffb6.DR-7.0.somatic.maf.ac3a9f5a-d78e-4b13-acb8-1001b215ffb6.gz +TCGA-ACC/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.ACC.somaticsniper.422bff06-f1b2-4768-be4a-8bcb82644ce2.DR-10.0.somatic.maf.422bff06-f1b2-4768-be4a-8bcb82644ce2.gz TCGA-ACC/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.ACC.somaticsniper.da92b810-c396-4963-b538-5454f13a297c.DR-7.0.somatic.maf.da92b810-c396-4963-b538-5454f13a297c.gz TCGA-ACC/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.ACC.varscan.2ff3f6bd-6114-431d-ab3b-656d7ab13996.DR-7.0.somatic.maf.2ff3f6bd-6114-431d-ab3b-656d7ab13996.gz +TCGA-ACC/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.ACC.varscan.747f92d2-3208-49cc-a564-3c5d0a2697ef.DR-10.0.somatic.maf.747f92d2-3208-49cc-a564-3c5d0a2697ef.gz TCGA-ACC/Transcriptome_Profiling/Gene_Expression_Quantification/26ac18a6-1e88-4a29-a514-05c2e0078aec.FPKM-UQ.1cf80958-0f98-445b-b91c-eae101b8fb38.txt.gz TCGA-ACC/Transcriptome_Profiling/Gene_Expression_Quantification/26ac18a6-1e88-4a29-a514-05c2e0078aec.FPKM.cc530ddb-02c2-47aa-9f3e-a5c39af69c5c.txt.gz TCGA-ACC/Transcriptome_Profiling/Gene_Expression_Quantification/26ac18a6-1e88-4a29-a514-05c2e0078aec.htseq.counts.76bfb639-1e16-4cf0-b280-a17305da2e13.gz @@ -60,10 +64,10 @@ TCGA-BLCA/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_BLCA.HumanMethylati TCGA-BLCA/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_BLCA.HumanMethylation450.2.lvl-3.TCGA-BL-A13I-01A-11D-A13Z-05.gdc_hg38.47c9b2e8-50fe-4433-8c04-fb0461db2509.txt TCGA-BLCA/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_BLCA.HumanMethylation450.2.lvl-3.TCGA-BL-A13I-01A-11D-A276-05.gdc_hg38.2e6821ed-8e54-4b8f-8a3e-581bb8eae81a.txt TCGA-BLCA/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_BLCA.HumanMethylation450.2.lvl-3.TCGA-BL-A13I-01B-04D-A276-05.gdc_hg38.79e66bef-80a0-42c8-8e35-00687018b4b0.txt -TCGA-BLCA/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.BLCA.muse.92f0f6c7-9f82-44e5-b7b2-66dbbfd30e70.DR-7.0.somatic.maf.92f0f6c7-9f82-44e5-b7b2-66dbbfd30e70.gz -TCGA-BLCA/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.BLCA.mutect.60fafc48-e348-411e-ac9d-869043bad259.DR-7.0.somatic.maf.60fafc48-e348-411e-ac9d-869043bad259.gz -TCGA-BLCA/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.BLCA.somaticsniper.a7cf5819-8b19-461c-aa4a-9f9513e60fa6.DR-7.0.somatic.maf.a7cf5819-8b19-461c-aa4a-9f9513e60fa6.gz -TCGA-BLCA/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.BLCA.varscan.fa676543-18a1-49ac-9523-54d6dd0d16d0.DR-7.0.somatic.maf.fa676543-18a1-49ac-9523-54d6dd0d16d0.gz +TCGA-BLCA/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.BLCA.muse.7ed5eb26-d52c-45c5-bfa1-e39f963007a8.DR-10.0.somatic.maf.7ed5eb26-d52c-45c5-bfa1-e39f963007a8.gz +TCGA-BLCA/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.BLCA.mutect.0e239d8f-47b0-4e47-9716-e9ecc87605b9.DR-10.0.somatic.maf.0e239d8f-47b0-4e47-9716-e9ecc87605b9.gz +TCGA-BLCA/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.BLCA.somaticsniper.17350cc9-f9ae-48c2-8663-25d794e873d1.DR-10.0.somatic.maf.17350cc9-f9ae-48c2-8663-25d794e873d1.gz +TCGA-BLCA/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.BLCA.varscan.4a755399-e5b5-4d0e-b1e3-dae24b81590e.DR-10.0.somatic.maf.4a755399-e5b5-4d0e-b1e3-dae24b81590e.gz TCGA-BLCA/Transcriptome_Profiling/Gene_Expression_Quantification/32841ed1-16e3-4a88-8f5c-7aaf24c84e70.FPKM-UQ.3a460d44-54ce-49dc-8cb7-39071f42e696.txt.gz TCGA-BLCA/Transcriptome_Profiling/Gene_Expression_Quantification/32841ed1-16e3-4a88-8f5c-7aaf24c84e70.FPKM.277e49dd-ae87-4b6a-91f2-121d47c6f330.txt.gz TCGA-BLCA/Transcriptome_Profiling/Gene_Expression_Quantification/32841ed1-16e3-4a88-8f5c-7aaf24c84e70.htseq.counts.48566693-0845-44b2-8612-4f713fee1bd7.gz @@ -130,8 +134,12 @@ TCGA-ESCA/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_ESCA.HumanMethylati TCGA-ESCA/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_ESCA.HumanMethylation450.2.lvl-3.TCGA-L5-A4OI-01A-11D-A265-05.gdc_hg38.09f09483-ca1b-4cc6-9d4f-784d22471df7.txt TCGA-ESCA/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_ESCA.HumanMethylation450.2.lvl-3.TCGA-L5-A4OI-11A-11D-A265-05.gdc_hg38.20048f6e-2f05-4029-af70-a664411f0fe7.txt TCGA-ESCA/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.ESCA.muse.71e290d0-170a-4e26-944f-91f9eeebc27a.DR-7.0.somatic.maf.71e290d0-170a-4e26-944f-91f9eeebc27a.gz +TCGA-ESCA/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.ESCA.muse.b267fee6-e9a0-4d50-88fb-79eb8da1e8dd.DR-10.0.somatic.maf.b267fee6-e9a0-4d50-88fb-79eb8da1e8dd.gz +TCGA-ESCA/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.ESCA.mutect.7f8e1e7c-621c-4dfd-8fad-af07c739dbfc.DR-10.0.somatic.maf.7f8e1e7c-621c-4dfd-8fad-af07c739dbfc.gz TCGA-ESCA/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.ESCA.mutect.c7fe427a-b447-4840-8cd1-fe33a236dfe7.DR-7.0.somatic.maf.c7fe427a-b447-4840-8cd1-fe33a236dfe7.gz +TCGA-ESCA/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.ESCA.somaticsniper.56890408-24a5-4b5a-b822-aaf872c057b8.DR-10.0.somatic.maf.56890408-24a5-4b5a-b822-aaf872c057b8.gz TCGA-ESCA/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.ESCA.somaticsniper.8de9f66a-ca56-4d68-a7a1-dbc00f2601cc.DR-7.0.somatic.maf.8de9f66a-ca56-4d68-a7a1-dbc00f2601cc.gz +TCGA-ESCA/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.ESCA.varscan.9dab6855-ba5e-4afb-b3a0-f034a6f82eb2.DR-10.0.somatic.maf.9dab6855-ba5e-4afb-b3a0-f034a6f82eb2.gz TCGA-ESCA/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.ESCA.varscan.a007d8f1-2368-48cb-b3be-df712788eba7.DR-7.0.somatic.maf.a007d8f1-2368-48cb-b3be-df712788eba7.gz TCGA-ESCA/Transcriptome_Profiling/Gene_Expression_Quantification/43f1cfcf-5c61-4dcf-9168-9cce41f8673c.FPKM-UQ.3cf7418d-39a9-4e53-9136-1dbe8df9f1a6.txt.gz TCGA-ESCA/Transcriptome_Profiling/Gene_Expression_Quantification/43f1cfcf-5c61-4dcf-9168-9cce41f8673c.FPKM.e0ed1b91-be78-4e80-9a2a-8faf99ffd78c.txt.gz @@ -157,10 +165,14 @@ TCGA-LAML/Copy_Number_Variation/Masked_Copy_Number_Segment/TCGA_AB_2959_03A_01D_ TCGA-LAML/Copy_Number_Variation/Masked_Copy_Number_Segment/TCGA_AB_2959_11A_01D_0756_21.nocnv_grch38.seg.243db832-02fc-450d-855e-f4b94f209ab1.txt TCGA-LAML/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_LAML.HumanMethylation27.1.lvl-3.TCGA-AB-2959-03A-01D-0741-05.gdc_hg38.2a642684-5255-44d1-a840-93ad39a93eb9.txt TCGA-LAML/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_LAML.HumanMethylation450.2.lvl-3.TCGA-AB-2959-03A-01D-0741-05.gdc_hg38.1eddc899-c6f3-43c4-904e-2be625e162ea.txt +TCGA-LAML/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.LAML.muse.0cdf3c70-ad58-462d-b6ba-5004b26c618e.DR-10.0.somatic.maf.0cdf3c70-ad58-462d-b6ba-5004b26c618e.gz TCGA-LAML/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.LAML.muse.8f865e42-fff9-4646-81b9-a184218104e2.DR-7.0.somatic.maf.8f865e42-fff9-4646-81b9-a184218104e2.gz +TCGA-LAML/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.LAML.mutect.27f42413-6d8f-401f-9d07-d019def8939e.DR-10.0.somatic.maf.27f42413-6d8f-401f-9d07-d019def8939e.gz TCGA-LAML/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.LAML.mutect.bc63d2f8-da4e-4dba-8738-a92ea33ea338.DR-7.0.somatic.maf.bc63d2f8-da4e-4dba-8738-a92ea33ea338.gz +TCGA-LAML/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.LAML.somaticsniper.99c2a8ba-1930-4dc7-ad71-7883eb7e29a9.DR-10.0.somatic.maf.99c2a8ba-1930-4dc7-ad71-7883eb7e29a9.gz TCGA-LAML/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.LAML.somaticsniper.b4260581-e5b2-4871-8128-52f502ffca87.DR-7.0.somatic.maf.b4260581-e5b2-4871-8128-52f502ffca87.gz TCGA-LAML/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.LAML.varscan.be016fba-ce36-419c-8028-4cf5049c9468.DR-7.0.somatic.maf.be016fba-ce36-419c-8028-4cf5049c9468.gz +TCGA-LAML/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.LAML.varscan.e595f93d-41ac-435e-8c90-06df7e9d6742.DR-10.0.somatic.maf.e595f93d-41ac-435e-8c90-06df7e9d6742.gz TCGA-LAML/Transcriptome_Profiling/Gene_Expression_Quantification/ee84e537-c13b-403a-8cd9-a8ab39012c53.FPKM-UQ.d76ee50c-fde5-4719-ae88-0fe90931170c.txt.gz TCGA-LAML/Transcriptome_Profiling/Gene_Expression_Quantification/ee84e537-c13b-403a-8cd9-a8ab39012c53.FPKM.099fa9f6-096b-408d-8f2f-6b8aebcdc708.txt.gz TCGA-LAML/Transcriptome_Profiling/Gene_Expression_Quantification/ee84e537-c13b-403a-8cd9-a8ab39012c53.htseq.counts.b3e9baff-615a-49d3-b58c-607cf3a091de.gz @@ -181,8 +193,12 @@ TCGA-SKCM/Copy_Number_Variation/Masked_Copy_Number_Segment/COMMY_p_TCGA_194_198_ TCGA-SKCM/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_SKCM.HumanMethylation450.1.lvl-3.TCGA-D3-A3C7-06A-11D-A19B-05.gdc_hg38.2db5c7cc-25f8-4d93-991f-173b8704cb14.txt TCGA-SKCM/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_SKCM.HumanMethylation450.2.lvl-3.TCGA-EE-A3J8-06A-11D-A211-05.gdc_hg38.342836f4-b506-4bf8-a1f6-949ce9cb17dc.txt TCGA-SKCM/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.SKCM.muse.a1fe3943-5377-4763-8494-5e4e61545820.DR-7.0.somatic.maf.a1fe3943-5377-4763-8494-5e4e61545820.gz +TCGA-SKCM/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.SKCM.muse.e433a47f-7281-42aa-8bba-0affd1eb6df0.DR-10.0.somatic.maf.e433a47f-7281-42aa-8bba-0affd1eb6df0.gz +TCGA-SKCM/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.SKCM.mutect.4b7a5729-b83e-4837-9b61-a6002dce1c0a.DR-10.0.somatic.maf.4b7a5729-b83e-4837-9b61-a6002dce1c0a.gz TCGA-SKCM/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.SKCM.mutect.7d62b913-4ae8-4c59-9819-71711f12b3b2.DR-7.0.somatic.maf.7d62b913-4ae8-4c59-9819-71711f12b3b2.gz TCGA-SKCM/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.SKCM.somaticsniper.8cce7734-539b-4fba-bf9a-69735906d962.DR-7.0.somatic.maf.8cce7734-539b-4fba-bf9a-69735906d962.gz +TCGA-SKCM/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.SKCM.somaticsniper.b8ef7b54-adb8-4751-93bd-c26349be4252.DR-10.0.somatic.maf.b8ef7b54-adb8-4751-93bd-c26349be4252.gz +TCGA-SKCM/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.SKCM.varscan.6c961926-7792-42fa-9a16-c62f60e2557b.DR-10.0.somatic.maf.6c961926-7792-42fa-9a16-c62f60e2557b.gz TCGA-SKCM/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/TCGA.SKCM.varscan.e751c317-d661-4290-b755-2b5c4d9cd0a4.DR-7.0.somatic.maf.e751c317-d661-4290-b755-2b5c4d9cd0a4.gz TCGA-SKCM/Transcriptome_Profiling/Gene_Expression_Quantification/2b485559-2b76-4729-83c8-82b788a9c5f7.FPKM-UQ.abc1a5a6-cd0b-450c-a650-dfe14fdb356b.txt.gz TCGA-SKCM/Transcriptome_Profiling/Gene_Expression_Quantification/2b485559-2b76-4729-83c8-82b788a9c5f7.FPKM.662e5a74-9217-413e-8321-07951d802b8a.txt.gz diff --git a/tests/baselines/mirror-md5sums.txt b/tests/baselines/mirror-md5sums.txt index 7c3de0f..bcdbeea 100644 --- a/tests/baselines/mirror-md5sums.txt +++ b/tests/baselines/mirror-md5sums.txt @@ -1,106 +1,106 @@ -029f2541f322e908bce13328064ce302 TCGA-BLCA/Transcriptome_Profiling/miRNA_Expression_Quantification/03c082fa-73fb-42ea-9ce4-ebd277dc91b9.mirbase21.mirnas.quantification.f7c40164-425e-4447-a3c8-06092fb2c2d2.txt -088db23e782abe06f87527129c810c05 TCGA-LAML/Copy_Number_Variation/Masked_Copy_Number_Segment/TCGA_AB_2959_03A_01D_0756_21.nocnv_grch38.seg.baaf6a06-a6be-417e-b45e-26678d9b3a0b.txt -0952d5982b495a71ec1ca993fba5c02a TCGA-BLCA/Transcriptome_Profiling/Isoform_Expression_Quantification/817b125d-a88e-4939-b0c0-81011b5f03be.mirbase21.isoforms.quantification.6924e6df-e8e4-4c29-8f09-d9171c775880.txt -0c6d8b0dd9084d779b517eb87e27e4bf TCGA-BLCA/Transcriptome_Profiling/miRNA_Expression_Quantification/e8824dd0-d9eb-4447-82c7-809242599211.mirbase21.mirnas.quantification.0656c281-e067-44a3-8070-9331327c60db.txt -12ae937fe634f63145ff811e4ae92df5 TCGA-BLCA/Copy_Number_Variation/Masked_Copy_Number_Segment/TOPOS_p_TCGAb_352_353_84_86_NSP_GenomeWideSNP_6_H01_1376612.nocnv_grch38.seg.5437d647-67ef-473a-ad5a-68a0fbe8e784.txt -13e616b3c63008cecc65bbb3d2285aa2 TCGA-ESCA/Transcriptome_Profiling/Isoform_Expression_Quantification/e01e55e5-c3ae-458f-b8f9-5af2c0992523.mirbase21.isoforms.quantification.1ad2ad46-c472-467c-9196-2644eec1b888.txt -14cfb4ccf0fcf51737247b929995104a TCGA-BLCA/Copy_Number_Variation/Masked_Copy_Number_Segment/AMAZE_p_TCGASNP_b86_87_88_N_GenomeWideSNP_6_C11_735468.nocnv_grch38.seg.bdaf9cf7-4396-4af0-b6db-b80d549dceae.txt -15734781d710c75536f1811c5d054983 TCGA-ESCA/Copy_Number_Variation/Copy_Number_Segment/BUCKS_p_TCGA_272_273_N_GenomeWideSNP_6_E07_1320612.grch38.seg.92990d84-9f3c-46d6-89ab-fb631dd4139f.txt -17c216fba09c57956ff6e8947783298b TCGA-LAML/Copy_Number_Variation/Copy_Number_Segment/TCGA_AB_2959_03A_01D_0756_21.grch38.seg.4dfea182-4c55-4e41-be7d-82b3a8e70ed9.txt -18deb98122a31bb9cedcce8a5acdf814 TCGA-BLCA/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_BLCA.HumanMethylation450.1.lvl-3.TCGA-BL-A13J-01B-04D-A276-05.gdc_hg38.8e2df3f9-f647-4438-b4a9-ac044f961d8c.txt -1b8376f763d409bcde7b7951f4a1401c TCGA-BLCA/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_BLCA.HumanMethylation450.2.lvl-3.TCGA-BL-A13I-01B-04D-A276-05.gdc_hg38.79e66bef-80a0-42c8-8e35-00687018b4b0.txt -1c009bd98c7489ddcbb9bb4ac1cb2cb6 TCGA-BLCA/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_BLCA.HumanMethylation450.1.lvl-3.TCGA-BL-A13J-11A-13D-A10W-05.gdc_hg38.416a338a-4d07-4134-be96-a660483f4d05.txt -1dee25a162ce046561ba84fcbf04aaca TCGA-ACC/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_ACC.HumanMethylation450.1.lvl-3.TCGA-OR-A5K2-01A-11D-A29J-05.gdc_hg38.c5a36e2a-33cd-484a-91db-4f030a5f5415.txt -21475a0060b4b4f797597e51fd02fd9e TCGA-ESCA/Copy_Number_Variation/Masked_Copy_Number_Segment/TEAKS_p_TCGA_258_259_260_254_N_GenomeWideSNP_6_F07_1301284.nocnv_grch38.seg.299a8a78-0da6-4f56-9d96-66413f9af000.txt -21814eedb906ee5a9bdd0473d544f97f TCGA-BLCA/Copy_Number_Variation/Copy_Number_Segment/HORNS_p_TCGA_b110_113_SNP_N_GenomeWideSNP_6_C03_772270.grch38.seg.1c6ceb91-6775-4b39-a4c2-603bdee5b4df.txt -23409cb7d5dacaeac13135fd22fed03e TCGA-ESCA/Transcriptome_Profiling/miRNA_Expression_Quantification/b52ff038-5f9f-4964-a192-9a85805c0d3f.mirbase21.mirnas.quantification.46956ae7-fed4-47a9-8b87-00356006ff92.txt -23b2d6ef9210e53bd0d7fae6e1ebd808 TCGA-ACC/Copy_Number_Variation/Copy_Number_Segment/BLAIN_p_TCGA_282_304_b2_N_GenomeWideSNP_6_D05_1348482.grch38.seg.a774d500-8c68-4071-a3b1-328f346b417c.txt -247e1a4252ae8a2a99b740f4fa4f7be0 TCGA-BLCA/Transcriptome_Profiling/Isoform_Expression_Quantification/b8a972b9-8db0-4021-8052-0d4fceb8077d.mirbase21.isoforms.quantification.574c8f0d-7619-4e1b-bf72-367c61d1f782.txt -2558fa68af616344d3cf50d4c374379a TCGA-BLCA/Copy_Number_Variation/Masked_Copy_Number_Segment/TOPOS_p_TCGAb_352_353_84_86_NSP_GenomeWideSNP_6_H05_1376458.nocnv_grch38.seg.d898ddd7-0b48-41c8-aed9-3852cb4d42cb.txt -2c63faa80b09410ccb3ce02ebd8edfcd TCGA-BLCA/Copy_Number_Variation/Copy_Number_Segment/TOPOS_p_TCGAb_352_353_84_86_NSP_GenomeWideSNP_6_H01_1376612.grch38.seg.df23eb3d-050f-4c67-b531-0c68509e4761.txt -3594776ced452c63a1ebc936dcff79d6 TCGA-ESCA/Transcriptome_Profiling/miRNA_Expression_Quantification/e01e55e5-c3ae-458f-b8f9-5af2c0992523.mirbase21.mirnas.quantification.9188849d-43eb-4f4d-a796-f3513db9cf6f.txt -35ab924dfddffa011cc3c8258f9580c1 TCGA-BLCA/Copy_Number_Variation/Masked_Copy_Number_Segment/HORNS_p_TCGA_b110_113_SNP_N_GenomeWideSNP_6_A06_772372.nocnv_grch38.seg.b493298c-1b31-4e35-bd7f-d0e699e996fc.txt -391194b41cf09ae6f18871cee5b12be7 TCGA-LAML/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_LAML.HumanMethylation27.1.lvl-3.TCGA-AB-2959-03A-01D-0741-05.gdc_hg38.2a642684-5255-44d1-a840-93ad39a93eb9.txt -3ad5a30bbf9fb5c690f94dd660b9b51a TCGA-ESCA/Transcriptome_Profiling/Isoform_Expression_Quantification/b52ff038-5f9f-4964-a192-9a85805c0d3f.mirbase21.isoforms.quantification.fceae8cb-64f4-4600-9d45-75868870940b.txt -3f85d2db8e107c3e7e0288456e36619b TCGA-SKCM/Copy_Number_Variation/Masked_Copy_Number_Segment/COMMY_p_TCGA_194_198_SNP_N_GenomeWideSNP_6_F12_955586.nocnv_grch38.seg.3b10f099-c085-47de-813a-b1b0bb33f5a1.txt -40002f913f89d6e79812738a6c32f0dc TCGA-ESCA/Copy_Number_Variation/Copy_Number_Segment/BUCKS_p_TCGA_272_273_N_GenomeWideSNP_6_E12_1320518.grch38.seg.57dd98d2-a674-4b94-8a51-60b3e32f0a14.txt -4177616b59282cffdb8004dd07959cfc TCGA-ACC/Copy_Number_Variation/Copy_Number_Segment/GAMED_p_TCGA_B_312_313_314_NSP_GenomeWideSNP_6_E06_1361784.grch38.seg.477185ad-aafa-4da0-be72-780bd66fb6cd.txt -41b78c3da941858ad36cb59ac8d132f3 TCGA-BLCA/Transcriptome_Profiling/miRNA_Expression_Quantification/7ffa9fc7-b7d3-4c8d-8822-99480bfff5e9.mirbase21.mirnas.quantification.17b8111c-cb88-4b7b-88f4-b04e39c34b74.txt -443ca049c7ac202ebaa156300a09ed0e TCGA-BLCA/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_BLCA.HumanMethylation450.1.lvl-3.TCGA-BL-A13J-01A-11D-A10W-05.gdc_hg38.cf119c4a-09a7-43ba-8264-7ff34bda6287.txt -44aefe896ee4393fd61df09df7589154 TCGA-ESCA/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_ESCA.HumanMethylation450.1.lvl-3.TCGA-IG-A3YB-01A-11D-A249-05.gdc_hg38.c7d718c2-750a-4f65-b3c6-aa3d23ff3947.txt -46dfac44e7c435ed1198fea2e0c56b8d TCGA-ACC/Copy_Number_Variation/Masked_Copy_Number_Segment/BLAIN_p_TCGA_282_304_b2_N_GenomeWideSNP_6_D06_1348572.nocnv_grch38.seg.dacf172e-89eb-4afa-9613-f683a558b088.txt -47968fcc0fb998db9016fc276df0040b TCGA-BLCA/Copy_Number_Variation/Copy_Number_Segment/TOPOS_p_TCGAb_352_353_84_86_NSP_GenomeWideSNP_6_G12_1376484.grch38.seg.4b8e94e8-c2a6-4cfc-a638-6df616d9f374.txt -47e57f57f83abe39f37db8b9891c32c9 TCGA-ACC/Copy_Number_Variation/Masked_Copy_Number_Segment/BLAIN_p_TCGA_282_304_b2_N_GenomeWideSNP_6_D05_1348482.nocnv_grch38.seg.e5012a07-cbb0-4bb7-903c-5b706f2ea874.txt -4b888c25c0fa907bd447af53398cc79d TCGA-SKCM/Copy_Number_Variation/Copy_Number_Segment/AVANT_p_TCGA_180_SNP_4N_GenomeWideSNP_6_G02_895328.grch38.seg.9dfcb350-d18e-4400-85e4-23b0a745931f.txt -51556ddc9169e563cfbd43b54e79ad64 TCGA-ACC/Transcriptome_Profiling/Isoform_Expression_Quantification/af888ab0-960e-4a7d-a950-dc5f46d3742a.mirbase21.isoforms.quantification.bd4a4c2d-a65f-4a70-8913-b9ce5cdf3708.txt -51eae12aeecf3c5dda952062026cb30a TCGA-ACC/Copy_Number_Variation/Masked_Copy_Number_Segment/GAMED_p_TCGA_B_312_313_314_NSP_GenomeWideSNP_6_E06_1361784.nocnv_grch38.seg.05a4633f-f012-43c0-90fd-268ad47f85b0.txt -5881c1381737a272f7f9eba4e41abb78 TCGA-ESCA/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_ESCA.HumanMethylation450.2.lvl-3.TCGA-L5-A4OI-11A-11D-A265-05.gdc_hg38.20048f6e-2f05-4029-af70-a664411f0fe7.txt -5a33ec68fdc89abe5ee3862fb273ef64 TCGA-BLCA/Transcriptome_Profiling/Isoform_Expression_Quantification/f05612d7-a70a-4d57-802a-66aff38db752.mirbase21.isoforms.quantification.80a76d38-63b7-4d36-b32d-d8ee992eacc4.txt -5c796e35effffd9a74c623a07dd228ea TCGA-BLCA/Transcriptome_Profiling/miRNA_Expression_Quantification/c204af1f-5ea6-418a-82e7-2ff2cbbae51c.mirbase21.mirnas.quantification.42d7b4b3-e2c8-4117-ab8f-4762238084f4.txt -5c94345a13a60dcb29f1ddac28a66f31 TCGA-BLCA/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_BLCA.HumanMethylation450.1.lvl-3.TCGA-BL-A13J-01A-11D-A276-05.gdc_hg38.ec0334f7-076e-4382-ba6f-d5860388d634.txt -5de4b6ad65aa1962fa7646d150eab668 TCGA-BLCA/Transcriptome_Profiling/miRNA_Expression_Quantification/817b125d-a88e-4939-b0c0-81011b5f03be.mirbase21.mirnas.quantification.890319d9-6015-4909-9cc8-9c1ddca57594.txt -64da8b8b70035fe5bb0f6f7b86789978 TCGA-ESCA/Copy_Number_Variation/Masked_Copy_Number_Segment/BUCKS_p_TCGA_272_273_N_GenomeWideSNP_6_E07_1320612.nocnv_grch38.seg.f904ee81-7611-48a1-9910-59c8a666330f.txt -6687a1df22f1ba19779aa6d4f6c41f0f TCGA-BLCA/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_BLCA.HumanMethylation450.2.lvl-3.TCGA-BL-A13I-01A-11D-A13Z-05.gdc_hg38.47c9b2e8-50fe-4433-8c04-fb0461db2509.txt -6eb04614f8052261306ed97a31b875c6 TCGA-BLCA/Copy_Number_Variation/Masked_Copy_Number_Segment/HORNS_p_TCGA_b110_113_SNP_N_GenomeWideSNP_6_C03_772270.nocnv_grch38.seg.3afc33aa-f792-4bcb-8b14-17f3e92694c9.txt -73adc4ddfc04f9c49177711c676373e0 TCGA-BLCA/Copy_Number_Variation/Copy_Number_Segment/AMAZE_p_TCGASNP_b86_87_88_N_GenomeWideSNP_6_D01_735568.grch38.seg.0dee3246-0f12-4ee8-888e-75658bbb4a90.txt -760111ddd75594fe3180d53c1e5aff95 TCGA-BLCA/Copy_Number_Variation/Copy_Number_Segment/AMAZE_p_TCGASNP_b86_87_88_N_GenomeWideSNP_6_A10_735526.grch38.seg.78c8db33-052b-45d7-b525-013003bd5e66.txt -7815680434a921cf8c0ec822da8b4710 TCGA-BLCA/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_BLCA.HumanMethylation450.2.lvl-3.TCGA-BL-A13I-01A-11D-A276-05.gdc_hg38.2e6821ed-8e54-4b8f-8a3e-581bb8eae81a.txt -799ea60a086b36db3039cffb7bac9186 TCGA-BLCA/Copy_Number_Variation/Masked_Copy_Number_Segment/TOPOS_p_TCGAb_352_353_84_86_NSP_GenomeWideSNP_6_H04_1376548.nocnv_grch38.seg.c063b466-b9d8-49c2-a39f-100770375d8f.txt -79c7ad05a31009d4003e4cde1fc75c91 TCGA-BLCA/Transcriptome_Profiling/Isoform_Expression_Quantification/7ffa9fc7-b7d3-4c8d-8822-99480bfff5e9.mirbase21.isoforms.quantification.7aeee345-da92-49ff-8e87-be1af0005a67.txt -7b741704d5982e2f62dd0561b2d58d99 TCGA-SKCM/Transcriptome_Profiling/miRNA_Expression_Quantification/e5cdfe4b-fc44-4732-af10-3a2748b42e0c.mirbase21.mirnas.quantification.d20cacfb-6450-4e67-8d76-13befceb907e.txt -7eeb34d35c8e2ec387e9bedbaf6e4af0 TCGA-ACC/Copy_Number_Variation/Masked_Copy_Number_Segment/GAMED_p_TCGA_B_312_313_314_NSP_GenomeWideSNP_6_E07_1361714.nocnv_grch38.seg.818e8b0a-04a7-42e5-929c-b9d11c64d1a9.txt -813749fbe6281a9b83db934179a6d730 TCGA-SKCM/Copy_Number_Variation/Copy_Number_Segment/COMMY_p_TCGA_194_198_SNP_N_GenomeWideSNP_6_F04_955566.grch38.seg.0dd468b0-4e9f-47a7-8594-10e9dc675d50.txt -826137cd4cbb4f3645d28a065bde4f94 TCGA-BLCA/Transcriptome_Profiling/miRNA_Expression_Quantification/f05612d7-a70a-4d57-802a-66aff38db752.mirbase21.mirnas.quantification.6f19f468-2594-454d-9fcd-b4db8cbcecf0.txt -827818150d39fe8fa3d094edd8ec37ff TCGA-BLCA/Copy_Number_Variation/Copy_Number_Segment/AMAZE_p_TCGASNP_b86_87_88_N_GenomeWideSNP_6_C11_735468.grch38.seg.e21b5a9d-33ac-4779-a632-bf604a55d04f.txt -8517a8fba815a161fd6b65c6947ab66c TCGA-BLCA/Copy_Number_Variation/Masked_Copy_Number_Segment/TOPOS_p_TCGAb_352_353_84_86_NSP_GenomeWideSNP_6_G12_1376484.nocnv_grch38.seg.d3f916ac-0306-478e-ad52-b926fd39e0fa.txt -853998a9277104cfa8272c37a42298a2 TCGA-BLCA/Transcriptome_Profiling/miRNA_Expression_Quantification/b8a972b9-8db0-4021-8052-0d4fceb8077d.mirbase21.mirnas.quantification.9f368f1b-84bf-4064-a2fa-8a235afb44dd.txt -8e022a8dac24bdb8968f98109ffac9e4 TCGA-BLCA/Transcriptome_Profiling/Isoform_Expression_Quantification/83c8eec0-c3e6-46ee-9d85-1e3c05c02551.mirbase21.isoforms.quantification.3bf77f03-b4bf-4425-aac5-aa14545b1281.txt -9069ff67e045a4586666d744a9c50358 TCGA-BLCA/Copy_Number_Variation/Masked_Copy_Number_Segment/AMAZE_p_TCGASNP_b86_87_88_N_GenomeWideSNP_6_H02_735486.nocnv_grch38.seg.a365ccb8-1e55-478b-b23c-26aa225d7adc.txt -9276b12967995579f5c14e9c244de37c TCGA-SKCM/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_SKCM.HumanMethylation450.1.lvl-3.TCGA-D3-A3C7-06A-11D-A19B-05.gdc_hg38.2db5c7cc-25f8-4d93-991f-173b8704cb14.txt -99340b3a37e6ba26785b7555a977ed36 TCGA-BLCA/Transcriptome_Profiling/Isoform_Expression_Quantification/03c082fa-73fb-42ea-9ce4-ebd277dc91b9.mirbase21.isoforms.quantification.09097819-2bae-433e-9cf9-44bc3ae50d34.txt -9aa85041a54f55c2897565618331eaeb TCGA-BLCA/Transcriptome_Profiling/miRNA_Expression_Quantification/83c8eec0-c3e6-46ee-9d85-1e3c05c02551.mirbase21.mirnas.quantification.dbfd82bc-40a9-45c1-87ff-ac6a1ce2a0e9.txt -9e24be119f4f219eb46c9c590df80c71 TCGA-SKCM/Transcriptome_Profiling/miRNA_Expression_Quantification/b71d3ee9-7b54-415a-89ff-3d13993d4e91.mirbase21.mirnas.quantification.05f6b2f8-6aaf-468f-a5fa-96f1ab5c0d43.txt -9f5ef2d7d40c2a2f309138f7aeeed93b TCGA-BLCA/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_BLCA.HumanMethylation450.1.lvl-3.TCGA-BL-A0C8-01B-04D-A276-05.gdc_hg38.4121d775-5546-4493-9b26-4fe1fd420469.txt -aad7d9057e62ab03b7eecd81364ae051 TCGA-BLCA/Transcriptome_Profiling/Isoform_Expression_Quantification/6f8554d7-edeb-4b8b-b0fd-d89f004b78de.mirbase21.isoforms.quantification.42616e6e-2d5c-497e-afe0-b2528ec48486.txt -ac0d811866d67d814ea2ce06938fb6f7 TCGA-SKCM/Copy_Number_Variation/Copy_Number_Segment/AVANT_p_TCGA_180_SNP_4N_GenomeWideSNP_6_D04_895472.grch38.seg.3d11f3d8-1fde-46ea-a962-187a56da4700.txt -ac8345133b4e812dc83988c7f8f25306 TCGA-BLCA/Transcriptome_Profiling/miRNA_Expression_Quantification/6f8554d7-edeb-4b8b-b0fd-d89f004b78de.mirbase21.mirnas.quantification.3b328a8d-2ee0-4429-87ac-fd0ddc60812c.txt -add0c0e438e8dd86a77ae46dc6e32001 TCGA-ESCA/Transcriptome_Profiling/Isoform_Expression_Quantification/a6b5cc4e-9211-486d-8b60-bb46e6aaf348.mirbase21.isoforms.quantification.e80ec825-2da2-4fa3-a42e-afaf4a18d9bf.txt -adf324e7ff9cdebd1f344dc73b634b8d TCGA-LAML/Copy_Number_Variation/Masked_Copy_Number_Segment/TCGA_AB_2959_11A_01D_0756_21.nocnv_grch38.seg.243db832-02fc-450d-855e-f4b94f209ab1.txt -afbf9e69b3db464ba2d6c5081919e130 TCGA-SKCM/Copy_Number_Variation/Masked_Copy_Number_Segment/AVANT_p_TCGA_180_SNP_4N_GenomeWideSNP_6_G02_895328.nocnv_grch38.seg.6ee6e045-fe18-4e98-bd7f-9bf133605bc4.txt -b1005fe38ccef7f81d570a6ca503ed03 TCGA-BLCA/Transcriptome_Profiling/miRNA_Expression_Quantification/0efd0b55-4f5b-47ca-aff6-3e5d56dc5650.mirbase21.mirnas.quantification.9f5bbd0f-927b-426c-a734-d96effb97472.txt -b5842d5626cf75d5e41dcc8b1b964820 TCGA-SKCM/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_SKCM.HumanMethylation450.2.lvl-3.TCGA-EE-A3J8-06A-11D-A211-05.gdc_hg38.342836f4-b506-4bf8-a1f6-949ce9cb17dc.txt -b6e10ca112567c982224cf8444f5958e TCGA-BLCA/Copy_Number_Variation/Masked_Copy_Number_Segment/AMAZE_p_TCGASNP_b86_87_88_N_GenomeWideSNP_6_A10_735526.nocnv_grch38.seg.a60d8205-8eb4-40d9-b203-507ae704fbbb.txt -b6f1ffd80260ecd1a10e75a5d155e8f8 TCGA-SKCM/Copy_Number_Variation/Copy_Number_Segment/COMMY_p_TCGA_194_198_SNP_N_GenomeWideSNP_6_F12_955586.grch38.seg.bd0e36f9-88c5-4750-86d6-00ca853ce452.txt -b7a1b6a5119de1d14ba72ab4ae78badd TCGA-SKCM/Transcriptome_Profiling/Isoform_Expression_Quantification/b71d3ee9-7b54-415a-89ff-3d13993d4e91.mirbase21.isoforms.quantification.65fb92ff-5b86-424c-8d3f-39444e2bf3e5.txt -b9260cfcdb55812a4d72ea7b62ae1ec8 TCGA-ESCA/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_ESCA.HumanMethylation450.2.lvl-3.TCGA-L5-A4OI-01A-11D-A265-05.gdc_hg38.09f09483-ca1b-4cc6-9d4f-784d22471df7.txt -b9e04292945464b9eece61fd2179067e TCGA-LAML/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_LAML.HumanMethylation450.2.lvl-3.TCGA-AB-2959-03A-01D-0741-05.gdc_hg38.1eddc899-c6f3-43c4-904e-2be625e162ea.txt -bc28ea208806ee7c71bce09a6f21519b TCGA-BLCA/Copy_Number_Variation/Masked_Copy_Number_Segment/TOPOS_p_TCGAb_352_353_84_86_NSP_GenomeWideSNP_6_H02_1376532.nocnv_grch38.seg.b4d48e92-4fec-4383-a404-4932dee54855.txt -bdc214aeddfe04e5e388f6f39ed4b41f TCGA-LAML/Copy_Number_Variation/Copy_Number_Segment/TCGA_AB_2959_11A_01D_0756_21.grch38.seg.b3695b49-5186-40d3-be83-176d127f3243.txt -bdddab02892b776108e68ed166f566c8 TCGA-SKCM/Copy_Number_Variation/Masked_Copy_Number_Segment/COMMY_p_TCGA_194_198_SNP_N_GenomeWideSNP_6_F04_955566.nocnv_grch38.seg.7ad67071-bc10-4430-bdf5-291b872609aa.txt -bec96641a572170bc46090d7986bc802 TCGA-ESCA/Copy_Number_Variation/Masked_Copy_Number_Segment/TEAKS_p_TCGA_258_259_260_254_N_GenomeWideSNP_6_F10_1301224.nocnv_grch38.seg.9fe8b124-43df-4de7-bb93-89832dcce477.txt -bf418ffd6b521c4af1bb1eec2d42a9e0 TCGA-BLCA/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_BLCA.HumanMethylation450.1.lvl-3.TCGA-BL-A0C8-01A-11D-A10W-05.gdc_hg38.f0aa1e07-3c84-4ace-a078-e398c21ab1fc.txt -cb763c907ef44ca9994d6f5c44c922e1 TCGA-BLCA/Copy_Number_Variation/Copy_Number_Segment/TOPOS_p_TCGAb_352_353_84_86_NSP_GenomeWideSNP_6_H02_1376532.grch38.seg.ac9ce61f-7250-485a-92c4-54e7b594bbc3.txt -cc66ee781faa1069340716c3437f3f84 TCGA-ESCA/Transcriptome_Profiling/Isoform_Expression_Quantification/4c913bf1-ca3b-4abc-9652-6fcbde6996bf.mirbase21.isoforms.quantification.f2947ffb-2d5c-4bca-8753-bfcc7d444319.txt -ce9bf54581549b805597b739b614cfd5 TCGA-BLCA/Copy_Number_Variation/Copy_Number_Segment/AMAZE_p_TCGASNP_b86_87_88_N_GenomeWideSNP_6_H02_735486.grch38.seg.642827c8-4b01-4b4e-9345-7d4f2843f714.txt -d44bfef8f1fec8585a0d28266cc348c0 TCGA-BLCA/Transcriptome_Profiling/Isoform_Expression_Quantification/c204af1f-5ea6-418a-82e7-2ff2cbbae51c.mirbase21.isoforms.quantification.da775086-d722-42ad-b8a5-58f4316de8b3.txt -d5d582a1babd8bf53a9d8ab747e2a22b TCGA-BLCA/Transcriptome_Profiling/Isoform_Expression_Quantification/0efd0b55-4f5b-47ca-aff6-3e5d56dc5650.mirbase21.isoforms.quantification.28f725f8-b144-4258-9f0b-df52c50819b7.txt -da01fa2a7710b9891be8e26d382397a4 TCGA-SKCM/Transcriptome_Profiling/Isoform_Expression_Quantification/e5cdfe4b-fc44-4732-af10-3a2748b42e0c.mirbase21.isoforms.quantification.ff62bfa3-ff36-4d41-84ed-debe33e62560.txt -db3b31d74573a07baae2965473837a09 TCGA-BLCA/Copy_Number_Variation/Copy_Number_Segment/TOPOS_p_TCGAb_352_353_84_86_NSP_GenomeWideSNP_6_H04_1376548.grch38.seg.ae7bda94-c86a-4008-a593-2a31f4dbd1f6.txt -de71245262679c1e7961253cb67cfc23 TCGA-ESCA/Copy_Number_Variation/Copy_Number_Segment/TEAKS_p_TCGA_258_259_260_254_N_GenomeWideSNP_6_F10_1301224.grch38.seg.a22ec975-483d-4a5d-92ba-5762f246d741.txt -df8e9e91e1ab1aca043a13de4cdf59eb TCGA-ACC/Copy_Number_Variation/Copy_Number_Segment/BLAIN_p_TCGA_282_304_b2_N_GenomeWideSNP_6_D06_1348572.grch38.seg.b0ef98ef-b83b-4f51-9099-a9602f3c7e32.txt -e451f613a8ab920b3ac273155c8084f3 TCGA-BLCA/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_BLCA.HumanMethylation450.1.lvl-3.TCGA-BL-A0C8-01A-11D-A276-05.gdc_hg38.f26962a4-1d81-4674-9d74-c256a125aa46.txt -e471a256e43666896ae533ec30b74404 TCGA-BLCA/Copy_Number_Variation/Copy_Number_Segment/HORNS_p_TCGA_b110_113_SNP_N_GenomeWideSNP_6_A06_772372.grch38.seg.665f04c6-af06-4935-bc00-8f278560ddf0.txt -e7b522af757a68fe391042c107bbc6b4 TCGA-ACC/Copy_Number_Variation/Copy_Number_Segment/GAMED_p_TCGA_B_312_313_314_NSP_GenomeWideSNP_6_E07_1361714.grch38.seg.7c263070-5b38-4d8c-9a31-899e1ba9d91d.txt -e8f746e65d0ac7fd7c4760b968ed4fa1 TCGA-ESCA/Copy_Number_Variation/Copy_Number_Segment/TEAKS_p_TCGA_258_259_260_254_N_GenomeWideSNP_6_F07_1301284.grch38.seg.7789cfd4-2eab-416b-b3d6-28aa6db61e98.txt -e99285e2f575bcf6bd8c02417c2f2aca TCGA-LAML/Transcriptome_Profiling/Isoform_Expression_Quantification/6e56ce6c-3fd4-4211-b471-dd2edbe71d08.mirbase21.isoforms.quantification.8cd55e72-e253-4cf5-b59c-2743f6a636dc.txt -ea2a5e92360dc7ec949bc8657c120052 TCGA-ESCA/Transcriptome_Profiling/miRNA_Expression_Quantification/a6b5cc4e-9211-486d-8b60-bb46e6aaf348.mirbase21.mirnas.quantification.7622ed32-0f43-425f-b4b2-4087c0bb64a7.txt -ebc9fdcffbcb387dee5235bd7a12c802 TCGA-LAML/Transcriptome_Profiling/miRNA_Expression_Quantification/6e56ce6c-3fd4-4211-b471-dd2edbe71d08.mirbase21.mirnas.quantification.43b62e24-6f1d-4629-a7ef-240a71fb620f.txt -f1f94d6eac4033f85682e637aa1cf839 TCGA-BLCA/Transcriptome_Profiling/Isoform_Expression_Quantification/e8824dd0-d9eb-4447-82c7-809242599211.mirbase21.isoforms.quantification.8d9f295e-76e4-4cef-82f6-7f1af3b4d7f7.txt -f4acf491032a39bfeb93195fb4cb9d95 TCGA-SKCM/Copy_Number_Variation/Masked_Copy_Number_Segment/AVANT_p_TCGA_180_SNP_4N_GenomeWideSNP_6_D04_895472.nocnv_grch38.seg.0a4bab0b-00f6-4f13-a1e6-31c20b2c16d6.txt -f64160851b01c35aa68509a363e837c5 TCGA-BLCA/Copy_Number_Variation/Copy_Number_Segment/TOPOS_p_TCGAb_352_353_84_86_NSP_GenomeWideSNP_6_H03_1376540.grch38.seg.045dae18-56ff-460f-9180-2fe17896044a.txt -f6434d8131f6c9c7ca3c186317e7e370 TCGA-ACC/Transcriptome_Profiling/miRNA_Expression_Quantification/af888ab0-960e-4a7d-a950-dc5f46d3742a.mirbase21.mirnas.quantification.c2264cc3-ffa7-41d4-85c8-f127677b5a6a.txt -fa4b65602ede541e573f17e1ed0ea927 TCGA-ESCA/Transcriptome_Profiling/miRNA_Expression_Quantification/4c913bf1-ca3b-4abc-9652-6fcbde6996bf.mirbase21.mirnas.quantification.d6c6aca1-4b04-4856-a3e4-adbd4bd33354.txt -fa95735468efb1c73b2a21eaf3727a41 TCGA-BLCA/Copy_Number_Variation/Masked_Copy_Number_Segment/TOPOS_p_TCGAb_352_353_84_86_NSP_GenomeWideSNP_6_H03_1376540.nocnv_grch38.seg.960fbcd2-469d-41be-bbcf-c8b3a106faba.txt -fdcb009f845c5450597fefd35763419d TCGA-BLCA/Copy_Number_Variation/Masked_Copy_Number_Segment/AMAZE_p_TCGASNP_b86_87_88_N_GenomeWideSNP_6_D01_735568.nocnv_grch38.seg.56892be9-4a15-42de-8483-d45cdd86a2d8.txt -fec6516a590485cc3e362e3836554a31 TCGA-BLCA/Copy_Number_Variation/Copy_Number_Segment/TOPOS_p_TCGAb_352_353_84_86_NSP_GenomeWideSNP_6_H05_1376458.grch38.seg.4922dd35-5ab8-4117-9f6f-2fba7ebc86b2.txt -ff9d146e0d55e9300f9758245e1b7d9c TCGA-ESCA/Copy_Number_Variation/Masked_Copy_Number_Segment/BUCKS_p_TCGA_272_273_N_GenomeWideSNP_6_E12_1320518.nocnv_grch38.seg.62575d54-e8af-4c17-a752-c0a42d0323ab.txt +029f2541f322e908bce13328064ce302 TCGA-BLCA/Transcriptome_Profiling/miRNA_Expression_Quantification/03c082fa-73fb-42ea-9ce4-ebd277dc91b9.mirbase21.mirnas.quantification.f7c40164-425e-4447-a3c8-06092fb2c2d2.txt +088db23e782abe06f87527129c810c05 TCGA-LAML/Copy_Number_Variation/Masked_Copy_Number_Segment/TCGA_AB_2959_03A_01D_0756_21.nocnv_grch38.seg.baaf6a06-a6be-417e-b45e-26678d9b3a0b.txt +0952d5982b495a71ec1ca993fba5c02a TCGA-BLCA/Transcriptome_Profiling/Isoform_Expression_Quantification/817b125d-a88e-4939-b0c0-81011b5f03be.mirbase21.isoforms.quantification.6924e6df-e8e4-4c29-8f09-d9171c775880.txt +0c6d8b0dd9084d779b517eb87e27e4bf TCGA-BLCA/Transcriptome_Profiling/miRNA_Expression_Quantification/e8824dd0-d9eb-4447-82c7-809242599211.mirbase21.mirnas.quantification.0656c281-e067-44a3-8070-9331327c60db.txt +12ae937fe634f63145ff811e4ae92df5 TCGA-BLCA/Copy_Number_Variation/Masked_Copy_Number_Segment/TOPOS_p_TCGAb_352_353_84_86_NSP_GenomeWideSNP_6_H01_1376612.nocnv_grch38.seg.5437d647-67ef-473a-ad5a-68a0fbe8e784.txt +13e616b3c63008cecc65bbb3d2285aa2 TCGA-ESCA/Transcriptome_Profiling/Isoform_Expression_Quantification/e01e55e5-c3ae-458f-b8f9-5af2c0992523.mirbase21.isoforms.quantification.1ad2ad46-c472-467c-9196-2644eec1b888.txt +14cfb4ccf0fcf51737247b929995104a TCGA-BLCA/Copy_Number_Variation/Masked_Copy_Number_Segment/AMAZE_p_TCGASNP_b86_87_88_N_GenomeWideSNP_6_C11_735468.nocnv_grch38.seg.bdaf9cf7-4396-4af0-b6db-b80d549dceae.txt +15734781d710c75536f1811c5d054983 TCGA-ESCA/Copy_Number_Variation/Copy_Number_Segment/BUCKS_p_TCGA_272_273_N_GenomeWideSNP_6_E07_1320612.grch38.seg.92990d84-9f3c-46d6-89ab-fb631dd4139f.txt +17c216fba09c57956ff6e8947783298b TCGA-LAML/Copy_Number_Variation/Copy_Number_Segment/TCGA_AB_2959_03A_01D_0756_21.grch38.seg.4dfea182-4c55-4e41-be7d-82b3a8e70ed9.txt +18deb98122a31bb9cedcce8a5acdf814 TCGA-BLCA/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_BLCA.HumanMethylation450.1.lvl-3.TCGA-BL-A13J-01B-04D-A276-05.gdc_hg38.8e2df3f9-f647-4438-b4a9-ac044f961d8c.txt +1b8376f763d409bcde7b7951f4a1401c TCGA-BLCA/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_BLCA.HumanMethylation450.2.lvl-3.TCGA-BL-A13I-01B-04D-A276-05.gdc_hg38.79e66bef-80a0-42c8-8e35-00687018b4b0.txt +1c009bd98c7489ddcbb9bb4ac1cb2cb6 TCGA-BLCA/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_BLCA.HumanMethylation450.1.lvl-3.TCGA-BL-A13J-11A-13D-A10W-05.gdc_hg38.416a338a-4d07-4134-be96-a660483f4d05.txt +1dee25a162ce046561ba84fcbf04aaca TCGA-ACC/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_ACC.HumanMethylation450.1.lvl-3.TCGA-OR-A5K2-01A-11D-A29J-05.gdc_hg38.c5a36e2a-33cd-484a-91db-4f030a5f5415.txt +21475a0060b4b4f797597e51fd02fd9e TCGA-ESCA/Copy_Number_Variation/Masked_Copy_Number_Segment/TEAKS_p_TCGA_258_259_260_254_N_GenomeWideSNP_6_F07_1301284.nocnv_grch38.seg.299a8a78-0da6-4f56-9d96-66413f9af000.txt +21814eedb906ee5a9bdd0473d544f97f TCGA-BLCA/Copy_Number_Variation/Copy_Number_Segment/HORNS_p_TCGA_b110_113_SNP_N_GenomeWideSNP_6_C03_772270.grch38.seg.1c6ceb91-6775-4b39-a4c2-603bdee5b4df.txt +23409cb7d5dacaeac13135fd22fed03e TCGA-ESCA/Transcriptome_Profiling/miRNA_Expression_Quantification/b52ff038-5f9f-4964-a192-9a85805c0d3f.mirbase21.mirnas.quantification.46956ae7-fed4-47a9-8b87-00356006ff92.txt +23b2d6ef9210e53bd0d7fae6e1ebd808 TCGA-ACC/Copy_Number_Variation/Copy_Number_Segment/BLAIN_p_TCGA_282_304_b2_N_GenomeWideSNP_6_D05_1348482.grch38.seg.a774d500-8c68-4071-a3b1-328f346b417c.txt +247e1a4252ae8a2a99b740f4fa4f7be0 TCGA-BLCA/Transcriptome_Profiling/Isoform_Expression_Quantification/b8a972b9-8db0-4021-8052-0d4fceb8077d.mirbase21.isoforms.quantification.574c8f0d-7619-4e1b-bf72-367c61d1f782.txt +2558fa68af616344d3cf50d4c374379a TCGA-BLCA/Copy_Number_Variation/Masked_Copy_Number_Segment/TOPOS_p_TCGAb_352_353_84_86_NSP_GenomeWideSNP_6_H05_1376458.nocnv_grch38.seg.d898ddd7-0b48-41c8-aed9-3852cb4d42cb.txt +2c63faa80b09410ccb3ce02ebd8edfcd TCGA-BLCA/Copy_Number_Variation/Copy_Number_Segment/TOPOS_p_TCGAb_352_353_84_86_NSP_GenomeWideSNP_6_H01_1376612.grch38.seg.df23eb3d-050f-4c67-b531-0c68509e4761.txt +3594776ced452c63a1ebc936dcff79d6 TCGA-ESCA/Transcriptome_Profiling/miRNA_Expression_Quantification/e01e55e5-c3ae-458f-b8f9-5af2c0992523.mirbase21.mirnas.quantification.9188849d-43eb-4f4d-a796-f3513db9cf6f.txt +35ab924dfddffa011cc3c8258f9580c1 TCGA-BLCA/Copy_Number_Variation/Masked_Copy_Number_Segment/HORNS_p_TCGA_b110_113_SNP_N_GenomeWideSNP_6_A06_772372.nocnv_grch38.seg.b493298c-1b31-4e35-bd7f-d0e699e996fc.txt +391194b41cf09ae6f18871cee5b12be7 TCGA-LAML/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_LAML.HumanMethylation27.1.lvl-3.TCGA-AB-2959-03A-01D-0741-05.gdc_hg38.2a642684-5255-44d1-a840-93ad39a93eb9.txt +3ad5a30bbf9fb5c690f94dd660b9b51a TCGA-ESCA/Transcriptome_Profiling/Isoform_Expression_Quantification/b52ff038-5f9f-4964-a192-9a85805c0d3f.mirbase21.isoforms.quantification.fceae8cb-64f4-4600-9d45-75868870940b.txt +3f85d2db8e107c3e7e0288456e36619b TCGA-SKCM/Copy_Number_Variation/Masked_Copy_Number_Segment/COMMY_p_TCGA_194_198_SNP_N_GenomeWideSNP_6_F12_955586.nocnv_grch38.seg.3b10f099-c085-47de-813a-b1b0bb33f5a1.txt +40002f913f89d6e79812738a6c32f0dc TCGA-ESCA/Copy_Number_Variation/Copy_Number_Segment/BUCKS_p_TCGA_272_273_N_GenomeWideSNP_6_E12_1320518.grch38.seg.57dd98d2-a674-4b94-8a51-60b3e32f0a14.txt +4177616b59282cffdb8004dd07959cfc TCGA-ACC/Copy_Number_Variation/Copy_Number_Segment/GAMED_p_TCGA_B_312_313_314_NSP_GenomeWideSNP_6_E06_1361784.grch38.seg.477185ad-aafa-4da0-be72-780bd66fb6cd.txt +41b78c3da941858ad36cb59ac8d132f3 TCGA-BLCA/Transcriptome_Profiling/miRNA_Expression_Quantification/7ffa9fc7-b7d3-4c8d-8822-99480bfff5e9.mirbase21.mirnas.quantification.17b8111c-cb88-4b7b-88f4-b04e39c34b74.txt +443ca049c7ac202ebaa156300a09ed0e TCGA-BLCA/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_BLCA.HumanMethylation450.1.lvl-3.TCGA-BL-A13J-01A-11D-A10W-05.gdc_hg38.cf119c4a-09a7-43ba-8264-7ff34bda6287.txt +44aefe896ee4393fd61df09df7589154 TCGA-ESCA/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_ESCA.HumanMethylation450.1.lvl-3.TCGA-IG-A3YB-01A-11D-A249-05.gdc_hg38.c7d718c2-750a-4f65-b3c6-aa3d23ff3947.txt +46dfac44e7c435ed1198fea2e0c56b8d TCGA-ACC/Copy_Number_Variation/Masked_Copy_Number_Segment/BLAIN_p_TCGA_282_304_b2_N_GenomeWideSNP_6_D06_1348572.nocnv_grch38.seg.dacf172e-89eb-4afa-9613-f683a558b088.txt +47968fcc0fb998db9016fc276df0040b TCGA-BLCA/Copy_Number_Variation/Copy_Number_Segment/TOPOS_p_TCGAb_352_353_84_86_NSP_GenomeWideSNP_6_G12_1376484.grch38.seg.4b8e94e8-c2a6-4cfc-a638-6df616d9f374.txt +47e57f57f83abe39f37db8b9891c32c9 TCGA-ACC/Copy_Number_Variation/Masked_Copy_Number_Segment/BLAIN_p_TCGA_282_304_b2_N_GenomeWideSNP_6_D05_1348482.nocnv_grch38.seg.e5012a07-cbb0-4bb7-903c-5b706f2ea874.txt +4b888c25c0fa907bd447af53398cc79d TCGA-SKCM/Copy_Number_Variation/Copy_Number_Segment/AVANT_p_TCGA_180_SNP_4N_GenomeWideSNP_6_G02_895328.grch38.seg.9dfcb350-d18e-4400-85e4-23b0a745931f.txt +51556ddc9169e563cfbd43b54e79ad64 TCGA-ACC/Transcriptome_Profiling/Isoform_Expression_Quantification/af888ab0-960e-4a7d-a950-dc5f46d3742a.mirbase21.isoforms.quantification.bd4a4c2d-a65f-4a70-8913-b9ce5cdf3708.txt +51eae12aeecf3c5dda952062026cb30a TCGA-ACC/Copy_Number_Variation/Masked_Copy_Number_Segment/GAMED_p_TCGA_B_312_313_314_NSP_GenomeWideSNP_6_E06_1361784.nocnv_grch38.seg.05a4633f-f012-43c0-90fd-268ad47f85b0.txt +5881c1381737a272f7f9eba4e41abb78 TCGA-ESCA/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_ESCA.HumanMethylation450.2.lvl-3.TCGA-L5-A4OI-11A-11D-A265-05.gdc_hg38.20048f6e-2f05-4029-af70-a664411f0fe7.txt +5a33ec68fdc89abe5ee3862fb273ef64 TCGA-BLCA/Transcriptome_Profiling/Isoform_Expression_Quantification/f05612d7-a70a-4d57-802a-66aff38db752.mirbase21.isoforms.quantification.80a76d38-63b7-4d36-b32d-d8ee992eacc4.txt +5c796e35effffd9a74c623a07dd228ea TCGA-BLCA/Transcriptome_Profiling/miRNA_Expression_Quantification/c204af1f-5ea6-418a-82e7-2ff2cbbae51c.mirbase21.mirnas.quantification.42d7b4b3-e2c8-4117-ab8f-4762238084f4.txt +5c94345a13a60dcb29f1ddac28a66f31 TCGA-BLCA/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_BLCA.HumanMethylation450.1.lvl-3.TCGA-BL-A13J-01A-11D-A276-05.gdc_hg38.ec0334f7-076e-4382-ba6f-d5860388d634.txt +5de4b6ad65aa1962fa7646d150eab668 TCGA-BLCA/Transcriptome_Profiling/miRNA_Expression_Quantification/817b125d-a88e-4939-b0c0-81011b5f03be.mirbase21.mirnas.quantification.890319d9-6015-4909-9cc8-9c1ddca57594.txt +64da8b8b70035fe5bb0f6f7b86789978 TCGA-ESCA/Copy_Number_Variation/Masked_Copy_Number_Segment/BUCKS_p_TCGA_272_273_N_GenomeWideSNP_6_E07_1320612.nocnv_grch38.seg.f904ee81-7611-48a1-9910-59c8a666330f.txt +6687a1df22f1ba19779aa6d4f6c41f0f TCGA-BLCA/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_BLCA.HumanMethylation450.2.lvl-3.TCGA-BL-A13I-01A-11D-A13Z-05.gdc_hg38.47c9b2e8-50fe-4433-8c04-fb0461db2509.txt +6eb04614f8052261306ed97a31b875c6 TCGA-BLCA/Copy_Number_Variation/Masked_Copy_Number_Segment/HORNS_p_TCGA_b110_113_SNP_N_GenomeWideSNP_6_C03_772270.nocnv_grch38.seg.3afc33aa-f792-4bcb-8b14-17f3e92694c9.txt +73adc4ddfc04f9c49177711c676373e0 TCGA-BLCA/Copy_Number_Variation/Copy_Number_Segment/AMAZE_p_TCGASNP_b86_87_88_N_GenomeWideSNP_6_D01_735568.grch38.seg.0dee3246-0f12-4ee8-888e-75658bbb4a90.txt +760111ddd75594fe3180d53c1e5aff95 TCGA-BLCA/Copy_Number_Variation/Copy_Number_Segment/AMAZE_p_TCGASNP_b86_87_88_N_GenomeWideSNP_6_A10_735526.grch38.seg.78c8db33-052b-45d7-b525-013003bd5e66.txt +7815680434a921cf8c0ec822da8b4710 TCGA-BLCA/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_BLCA.HumanMethylation450.2.lvl-3.TCGA-BL-A13I-01A-11D-A276-05.gdc_hg38.2e6821ed-8e54-4b8f-8a3e-581bb8eae81a.txt +799ea60a086b36db3039cffb7bac9186 TCGA-BLCA/Copy_Number_Variation/Masked_Copy_Number_Segment/TOPOS_p_TCGAb_352_353_84_86_NSP_GenomeWideSNP_6_H04_1376548.nocnv_grch38.seg.c063b466-b9d8-49c2-a39f-100770375d8f.txt +79c7ad05a31009d4003e4cde1fc75c91 TCGA-BLCA/Transcriptome_Profiling/Isoform_Expression_Quantification/7ffa9fc7-b7d3-4c8d-8822-99480bfff5e9.mirbase21.isoforms.quantification.7aeee345-da92-49ff-8e87-be1af0005a67.txt +7b741704d5982e2f62dd0561b2d58d99 TCGA-SKCM/Transcriptome_Profiling/miRNA_Expression_Quantification/e5cdfe4b-fc44-4732-af10-3a2748b42e0c.mirbase21.mirnas.quantification.d20cacfb-6450-4e67-8d76-13befceb907e.txt +7eeb34d35c8e2ec387e9bedbaf6e4af0 TCGA-ACC/Copy_Number_Variation/Masked_Copy_Number_Segment/GAMED_p_TCGA_B_312_313_314_NSP_GenomeWideSNP_6_E07_1361714.nocnv_grch38.seg.818e8b0a-04a7-42e5-929c-b9d11c64d1a9.txt +813749fbe6281a9b83db934179a6d730 TCGA-SKCM/Copy_Number_Variation/Copy_Number_Segment/COMMY_p_TCGA_194_198_SNP_N_GenomeWideSNP_6_F04_955566.grch38.seg.0dd468b0-4e9f-47a7-8594-10e9dc675d50.txt +826137cd4cbb4f3645d28a065bde4f94 TCGA-BLCA/Transcriptome_Profiling/miRNA_Expression_Quantification/f05612d7-a70a-4d57-802a-66aff38db752.mirbase21.mirnas.quantification.6f19f468-2594-454d-9fcd-b4db8cbcecf0.txt +827818150d39fe8fa3d094edd8ec37ff TCGA-BLCA/Copy_Number_Variation/Copy_Number_Segment/AMAZE_p_TCGASNP_b86_87_88_N_GenomeWideSNP_6_C11_735468.grch38.seg.e21b5a9d-33ac-4779-a632-bf604a55d04f.txt +8517a8fba815a161fd6b65c6947ab66c TCGA-BLCA/Copy_Number_Variation/Masked_Copy_Number_Segment/TOPOS_p_TCGAb_352_353_84_86_NSP_GenomeWideSNP_6_G12_1376484.nocnv_grch38.seg.d3f916ac-0306-478e-ad52-b926fd39e0fa.txt +853998a9277104cfa8272c37a42298a2 TCGA-BLCA/Transcriptome_Profiling/miRNA_Expression_Quantification/b8a972b9-8db0-4021-8052-0d4fceb8077d.mirbase21.mirnas.quantification.9f368f1b-84bf-4064-a2fa-8a235afb44dd.txt +8e022a8dac24bdb8968f98109ffac9e4 TCGA-BLCA/Transcriptome_Profiling/Isoform_Expression_Quantification/83c8eec0-c3e6-46ee-9d85-1e3c05c02551.mirbase21.isoforms.quantification.3bf77f03-b4bf-4425-aac5-aa14545b1281.txt +9069ff67e045a4586666d744a9c50358 TCGA-BLCA/Copy_Number_Variation/Masked_Copy_Number_Segment/AMAZE_p_TCGASNP_b86_87_88_N_GenomeWideSNP_6_H02_735486.nocnv_grch38.seg.a365ccb8-1e55-478b-b23c-26aa225d7adc.txt +9276b12967995579f5c14e9c244de37c TCGA-SKCM/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_SKCM.HumanMethylation450.1.lvl-3.TCGA-D3-A3C7-06A-11D-A19B-05.gdc_hg38.2db5c7cc-25f8-4d93-991f-173b8704cb14.txt +99340b3a37e6ba26785b7555a977ed36 TCGA-BLCA/Transcriptome_Profiling/Isoform_Expression_Quantification/03c082fa-73fb-42ea-9ce4-ebd277dc91b9.mirbase21.isoforms.quantification.09097819-2bae-433e-9cf9-44bc3ae50d34.txt +9aa85041a54f55c2897565618331eaeb TCGA-BLCA/Transcriptome_Profiling/miRNA_Expression_Quantification/83c8eec0-c3e6-46ee-9d85-1e3c05c02551.mirbase21.mirnas.quantification.dbfd82bc-40a9-45c1-87ff-ac6a1ce2a0e9.txt +9e24be119f4f219eb46c9c590df80c71 TCGA-SKCM/Transcriptome_Profiling/miRNA_Expression_Quantification/b71d3ee9-7b54-415a-89ff-3d13993d4e91.mirbase21.mirnas.quantification.05f6b2f8-6aaf-468f-a5fa-96f1ab5c0d43.txt +9f5ef2d7d40c2a2f309138f7aeeed93b TCGA-BLCA/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_BLCA.HumanMethylation450.1.lvl-3.TCGA-BL-A0C8-01B-04D-A276-05.gdc_hg38.4121d775-5546-4493-9b26-4fe1fd420469.txt +aad7d9057e62ab03b7eecd81364ae051 TCGA-BLCA/Transcriptome_Profiling/Isoform_Expression_Quantification/6f8554d7-edeb-4b8b-b0fd-d89f004b78de.mirbase21.isoforms.quantification.42616e6e-2d5c-497e-afe0-b2528ec48486.txt +ac0d811866d67d814ea2ce06938fb6f7 TCGA-SKCM/Copy_Number_Variation/Copy_Number_Segment/AVANT_p_TCGA_180_SNP_4N_GenomeWideSNP_6_D04_895472.grch38.seg.3d11f3d8-1fde-46ea-a962-187a56da4700.txt +ac8345133b4e812dc83988c7f8f25306 TCGA-BLCA/Transcriptome_Profiling/miRNA_Expression_Quantification/6f8554d7-edeb-4b8b-b0fd-d89f004b78de.mirbase21.mirnas.quantification.3b328a8d-2ee0-4429-87ac-fd0ddc60812c.txt +add0c0e438e8dd86a77ae46dc6e32001 TCGA-ESCA/Transcriptome_Profiling/Isoform_Expression_Quantification/a6b5cc4e-9211-486d-8b60-bb46e6aaf348.mirbase21.isoforms.quantification.e80ec825-2da2-4fa3-a42e-afaf4a18d9bf.txt +adf324e7ff9cdebd1f344dc73b634b8d TCGA-LAML/Copy_Number_Variation/Masked_Copy_Number_Segment/TCGA_AB_2959_11A_01D_0756_21.nocnv_grch38.seg.243db832-02fc-450d-855e-f4b94f209ab1.txt +afbf9e69b3db464ba2d6c5081919e130 TCGA-SKCM/Copy_Number_Variation/Masked_Copy_Number_Segment/AVANT_p_TCGA_180_SNP_4N_GenomeWideSNP_6_G02_895328.nocnv_grch38.seg.6ee6e045-fe18-4e98-bd7f-9bf133605bc4.txt +b1005fe38ccef7f81d570a6ca503ed03 TCGA-BLCA/Transcriptome_Profiling/miRNA_Expression_Quantification/0efd0b55-4f5b-47ca-aff6-3e5d56dc5650.mirbase21.mirnas.quantification.9f5bbd0f-927b-426c-a734-d96effb97472.txt +b5842d5626cf75d5e41dcc8b1b964820 TCGA-SKCM/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_SKCM.HumanMethylation450.2.lvl-3.TCGA-EE-A3J8-06A-11D-A211-05.gdc_hg38.342836f4-b506-4bf8-a1f6-949ce9cb17dc.txt +b6e10ca112567c982224cf8444f5958e TCGA-BLCA/Copy_Number_Variation/Masked_Copy_Number_Segment/AMAZE_p_TCGASNP_b86_87_88_N_GenomeWideSNP_6_A10_735526.nocnv_grch38.seg.a60d8205-8eb4-40d9-b203-507ae704fbbb.txt +b6f1ffd80260ecd1a10e75a5d155e8f8 TCGA-SKCM/Copy_Number_Variation/Copy_Number_Segment/COMMY_p_TCGA_194_198_SNP_N_GenomeWideSNP_6_F12_955586.grch38.seg.bd0e36f9-88c5-4750-86d6-00ca853ce452.txt +b7a1b6a5119de1d14ba72ab4ae78badd TCGA-SKCM/Transcriptome_Profiling/Isoform_Expression_Quantification/b71d3ee9-7b54-415a-89ff-3d13993d4e91.mirbase21.isoforms.quantification.65fb92ff-5b86-424c-8d3f-39444e2bf3e5.txt +b9260cfcdb55812a4d72ea7b62ae1ec8 TCGA-ESCA/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_ESCA.HumanMethylation450.2.lvl-3.TCGA-L5-A4OI-01A-11D-A265-05.gdc_hg38.09f09483-ca1b-4cc6-9d4f-784d22471df7.txt +b9e04292945464b9eece61fd2179067e TCGA-LAML/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_LAML.HumanMethylation450.2.lvl-3.TCGA-AB-2959-03A-01D-0741-05.gdc_hg38.1eddc899-c6f3-43c4-904e-2be625e162ea.txt +bc28ea208806ee7c71bce09a6f21519b TCGA-BLCA/Copy_Number_Variation/Masked_Copy_Number_Segment/TOPOS_p_TCGAb_352_353_84_86_NSP_GenomeWideSNP_6_H02_1376532.nocnv_grch38.seg.b4d48e92-4fec-4383-a404-4932dee54855.txt +bdc214aeddfe04e5e388f6f39ed4b41f TCGA-LAML/Copy_Number_Variation/Copy_Number_Segment/TCGA_AB_2959_11A_01D_0756_21.grch38.seg.b3695b49-5186-40d3-be83-176d127f3243.txt +bdddab02892b776108e68ed166f566c8 TCGA-SKCM/Copy_Number_Variation/Masked_Copy_Number_Segment/COMMY_p_TCGA_194_198_SNP_N_GenomeWideSNP_6_F04_955566.nocnv_grch38.seg.7ad67071-bc10-4430-bdf5-291b872609aa.txt +bec96641a572170bc46090d7986bc802 TCGA-ESCA/Copy_Number_Variation/Masked_Copy_Number_Segment/TEAKS_p_TCGA_258_259_260_254_N_GenomeWideSNP_6_F10_1301224.nocnv_grch38.seg.9fe8b124-43df-4de7-bb93-89832dcce477.txt +bf418ffd6b521c4af1bb1eec2d42a9e0 TCGA-BLCA/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_BLCA.HumanMethylation450.1.lvl-3.TCGA-BL-A0C8-01A-11D-A10W-05.gdc_hg38.f0aa1e07-3c84-4ace-a078-e398c21ab1fc.txt +cb763c907ef44ca9994d6f5c44c922e1 TCGA-BLCA/Copy_Number_Variation/Copy_Number_Segment/TOPOS_p_TCGAb_352_353_84_86_NSP_GenomeWideSNP_6_H02_1376532.grch38.seg.ac9ce61f-7250-485a-92c4-54e7b594bbc3.txt +cc66ee781faa1069340716c3437f3f84 TCGA-ESCA/Transcriptome_Profiling/Isoform_Expression_Quantification/4c913bf1-ca3b-4abc-9652-6fcbde6996bf.mirbase21.isoforms.quantification.f2947ffb-2d5c-4bca-8753-bfcc7d444319.txt +ce9bf54581549b805597b739b614cfd5 TCGA-BLCA/Copy_Number_Variation/Copy_Number_Segment/AMAZE_p_TCGASNP_b86_87_88_N_GenomeWideSNP_6_H02_735486.grch38.seg.642827c8-4b01-4b4e-9345-7d4f2843f714.txt +d44bfef8f1fec8585a0d28266cc348c0 TCGA-BLCA/Transcriptome_Profiling/Isoform_Expression_Quantification/c204af1f-5ea6-418a-82e7-2ff2cbbae51c.mirbase21.isoforms.quantification.da775086-d722-42ad-b8a5-58f4316de8b3.txt +d5d582a1babd8bf53a9d8ab747e2a22b TCGA-BLCA/Transcriptome_Profiling/Isoform_Expression_Quantification/0efd0b55-4f5b-47ca-aff6-3e5d56dc5650.mirbase21.isoforms.quantification.28f725f8-b144-4258-9f0b-df52c50819b7.txt +da01fa2a7710b9891be8e26d382397a4 TCGA-SKCM/Transcriptome_Profiling/Isoform_Expression_Quantification/e5cdfe4b-fc44-4732-af10-3a2748b42e0c.mirbase21.isoforms.quantification.ff62bfa3-ff36-4d41-84ed-debe33e62560.txt +db3b31d74573a07baae2965473837a09 TCGA-BLCA/Copy_Number_Variation/Copy_Number_Segment/TOPOS_p_TCGAb_352_353_84_86_NSP_GenomeWideSNP_6_H04_1376548.grch38.seg.ae7bda94-c86a-4008-a593-2a31f4dbd1f6.txt +de71245262679c1e7961253cb67cfc23 TCGA-ESCA/Copy_Number_Variation/Copy_Number_Segment/TEAKS_p_TCGA_258_259_260_254_N_GenomeWideSNP_6_F10_1301224.grch38.seg.a22ec975-483d-4a5d-92ba-5762f246d741.txt +df8e9e91e1ab1aca043a13de4cdf59eb TCGA-ACC/Copy_Number_Variation/Copy_Number_Segment/BLAIN_p_TCGA_282_304_b2_N_GenomeWideSNP_6_D06_1348572.grch38.seg.b0ef98ef-b83b-4f51-9099-a9602f3c7e32.txt +e451f613a8ab920b3ac273155c8084f3 TCGA-BLCA/DNA_Methylation/Methylation_Beta_Value/jhu-usc.edu_BLCA.HumanMethylation450.1.lvl-3.TCGA-BL-A0C8-01A-11D-A276-05.gdc_hg38.f26962a4-1d81-4674-9d74-c256a125aa46.txt +e471a256e43666896ae533ec30b74404 TCGA-BLCA/Copy_Number_Variation/Copy_Number_Segment/HORNS_p_TCGA_b110_113_SNP_N_GenomeWideSNP_6_A06_772372.grch38.seg.665f04c6-af06-4935-bc00-8f278560ddf0.txt +e7b522af757a68fe391042c107bbc6b4 TCGA-ACC/Copy_Number_Variation/Copy_Number_Segment/GAMED_p_TCGA_B_312_313_314_NSP_GenomeWideSNP_6_E07_1361714.grch38.seg.7c263070-5b38-4d8c-9a31-899e1ba9d91d.txt +e8f746e65d0ac7fd7c4760b968ed4fa1 TCGA-ESCA/Copy_Number_Variation/Copy_Number_Segment/TEAKS_p_TCGA_258_259_260_254_N_GenomeWideSNP_6_F07_1301284.grch38.seg.7789cfd4-2eab-416b-b3d6-28aa6db61e98.txt +e99285e2f575bcf6bd8c02417c2f2aca TCGA-LAML/Transcriptome_Profiling/Isoform_Expression_Quantification/6e56ce6c-3fd4-4211-b471-dd2edbe71d08.mirbase21.isoforms.quantification.8cd55e72-e253-4cf5-b59c-2743f6a636dc.txt +ea2a5e92360dc7ec949bc8657c120052 TCGA-ESCA/Transcriptome_Profiling/miRNA_Expression_Quantification/a6b5cc4e-9211-486d-8b60-bb46e6aaf348.mirbase21.mirnas.quantification.7622ed32-0f43-425f-b4b2-4087c0bb64a7.txt +ebc9fdcffbcb387dee5235bd7a12c802 TCGA-LAML/Transcriptome_Profiling/miRNA_Expression_Quantification/6e56ce6c-3fd4-4211-b471-dd2edbe71d08.mirbase21.mirnas.quantification.43b62e24-6f1d-4629-a7ef-240a71fb620f.txt +f1f94d6eac4033f85682e637aa1cf839 TCGA-BLCA/Transcriptome_Profiling/Isoform_Expression_Quantification/e8824dd0-d9eb-4447-82c7-809242599211.mirbase21.isoforms.quantification.8d9f295e-76e4-4cef-82f6-7f1af3b4d7f7.txt +f4acf491032a39bfeb93195fb4cb9d95 TCGA-SKCM/Copy_Number_Variation/Masked_Copy_Number_Segment/AVANT_p_TCGA_180_SNP_4N_GenomeWideSNP_6_D04_895472.nocnv_grch38.seg.0a4bab0b-00f6-4f13-a1e6-31c20b2c16d6.txt +f64160851b01c35aa68509a363e837c5 TCGA-BLCA/Copy_Number_Variation/Copy_Number_Segment/TOPOS_p_TCGAb_352_353_84_86_NSP_GenomeWideSNP_6_H03_1376540.grch38.seg.045dae18-56ff-460f-9180-2fe17896044a.txt +f6434d8131f6c9c7ca3c186317e7e370 TCGA-ACC/Transcriptome_Profiling/miRNA_Expression_Quantification/af888ab0-960e-4a7d-a950-dc5f46d3742a.mirbase21.mirnas.quantification.c2264cc3-ffa7-41d4-85c8-f127677b5a6a.txt +fa4b65602ede541e573f17e1ed0ea927 TCGA-ESCA/Transcriptome_Profiling/miRNA_Expression_Quantification/4c913bf1-ca3b-4abc-9652-6fcbde6996bf.mirbase21.mirnas.quantification.d6c6aca1-4b04-4856-a3e4-adbd4bd33354.txt +fa95735468efb1c73b2a21eaf3727a41 TCGA-BLCA/Copy_Number_Variation/Masked_Copy_Number_Segment/TOPOS_p_TCGAb_352_353_84_86_NSP_GenomeWideSNP_6_H03_1376540.nocnv_grch38.seg.960fbcd2-469d-41be-bbcf-c8b3a106faba.txt +fdcb009f845c5450597fefd35763419d TCGA-BLCA/Copy_Number_Variation/Masked_Copy_Number_Segment/AMAZE_p_TCGASNP_b86_87_88_N_GenomeWideSNP_6_D01_735568.nocnv_grch38.seg.56892be9-4a15-42de-8483-d45cdd86a2d8.txt +fec6516a590485cc3e362e3836554a31 TCGA-BLCA/Copy_Number_Variation/Copy_Number_Segment/TOPOS_p_TCGAb_352_353_84_86_NSP_GenomeWideSNP_6_H05_1376458.grch38.seg.4922dd35-5ab8-4117-9f6f-2fba7ebc86b2.txt +ff9d146e0d55e9300f9758245e1b7d9c TCGA-ESCA/Copy_Number_Variation/Masked_Copy_Number_Segment/BUCKS_p_TCGA_272_273_N_GenomeWideSNP_6_E12_1320518.nocnv_grch38.seg.62575d54-e8af-4c17-a752-c0a42d0323ab.txt diff --git a/tests/corrupt_mirror.cfg b/tests/corrupt_mirror.cfg new file mode 100644 index 0000000..b803894 --- /dev/null +++ b/tests/corrupt_mirror.cfg @@ -0,0 +1,30 @@ +# NOTE: this .cfg is intended for use as a local smoke test, and is NOT intended +# for production use. See config/tcga.cfg for a production config file (and +# more description of each config file section). + +[DEFAULT] +ROOT_DIR: ./corrupt_sandbox +LOG_DIR: %(ROOT_DIR)s/logs +REFERENCE_DIR: ./reference +PROGRAMS: TCGA +DATESTAMPS: %(ROOT_DIR)s/datestamps.txt +PROJECTS: TCGA-ACC +CASES: TCGA-OR-A5L1 + +[mirror] +DIR: %(ROOT_DIR)s/mirror + +[dice] +DIR: %(ROOT_DIR)s/dice + +[loadfile] +DIR: %(ROOT_DIR)s/loadfiles +FILTERED_SAMPLES: %(ROOT_DIR)s/loadfiles/filtered_samples.txt + +[report] +DIR: %(ROOT_DIR)s/reports +HEATMAPS_DIR: %(ROOT_DIR)s/heatmaps +REDACTIONS_DIR: %(ROOT_DIR)s/redactions +BLACKLIST: %(ROOT_DIR)s/config/blacklist.tsv + + diff --git a/tests/pool.cfg b/tests/pool.cfg new file mode 100644 index 0000000..27707cd --- /dev/null +++ b/tests/pool.cfg @@ -0,0 +1,30 @@ +# NOTE: this .cfg is intended for use as a local smoke test, and is NOT intended +# for production use. See config/tcga.cfg for a production config file (and +# more description of each config file section). + +[DEFAULT] +ROOT_DIR: ./pool_sandbox +LOG_DIR: %(ROOT_DIR)s/logs +REFERENCE_DIR: ./reference +PROGRAMS: TCGA +DATESTAMPS: %(ROOT_DIR)s/datestamps.txt +PROJECTS: TCGA-ACC + + +[mirror] +DIR: %(ROOT_DIR)s/mirror + +[dice] +DIR: %(ROOT_DIR)s/dice + +[loadfile] +DIR: %(ROOT_DIR)s/loadfiles +FILTERED_SAMPLES: %(ROOT_DIR)s/loadfiles/filtered_samples.txt + +[report] +DIR: %(ROOT_DIR)s/reports +HEATMAPS_DIR: %(ROOT_DIR)s/heatmaps +REDACTIONS_DIR: %(ROOT_DIR)s/redactions +BLACKLIST: %(ROOT_DIR)s/config/blacklist.tsv + + diff --git a/tests/pool1.cfg b/tests/pool1.cfg new file mode 100644 index 0000000..c9c89db --- /dev/null +++ b/tests/pool1.cfg @@ -0,0 +1,30 @@ +# NOTE: this .cfg is intended for use as a local smoke test, and is NOT intended +# for production use. See config/tcga.cfg for a production config file (and +# more description of each config file section). + +[DEFAULT] +ROOT_DIR: ./pool_sandbox +LOG_DIR: %(ROOT_DIR)s/logs +REFERENCE_DIR: ./reference +PROGRAMS: TCGA +DATESTAMPS: %(ROOT_DIR)s/datestamps.txt +PROJECTS: TCGA-ACC +CASES: TCGA-OR-A5L1 + +[mirror] +DIR: %(ROOT_DIR)s/mirror + +[dice] +DIR: %(ROOT_DIR)s/dice + +[loadfile] +DIR: %(ROOT_DIR)s/loadfiles +FILTERED_SAMPLES: %(ROOT_DIR)s/loadfiles/filtered_samples.txt + +[report] +DIR: %(ROOT_DIR)s/reports +HEATMAPS_DIR: %(ROOT_DIR)s/heatmaps +REDACTIONS_DIR: %(ROOT_DIR)s/redactions +BLACKLIST: %(ROOT_DIR)s/config/blacklist.tsv + + diff --git a/tests/pool2.cfg b/tests/pool2.cfg new file mode 100644 index 0000000..da6d3a2 --- /dev/null +++ b/tests/pool2.cfg @@ -0,0 +1,30 @@ +# NOTE: this .cfg is intended for use as a local smoke test, and is NOT intended +# for production use. See config/tcga.cfg for a production config file (and +# more description of each config file section). + +[DEFAULT] +ROOT_DIR: ./pool_sandbox +LOG_DIR: %(ROOT_DIR)s/logs +REFERENCE_DIR: ./reference +PROGRAMS: TCGA +DATESTAMPS: %(ROOT_DIR)s/datestamps.txt +PROJECTS: TCGA-ACC +CASES: TCGA-OR-A5K2 + +[mirror] +DIR: %(ROOT_DIR)s/mirror + +[dice] +DIR: %(ROOT_DIR)s/dice + +[loadfile] +DIR: %(ROOT_DIR)s/loadfiles +FILTERED_SAMPLES: %(ROOT_DIR)s/loadfiles/filtered_samples.txt + +[report] +DIR: %(ROOT_DIR)s/reports +HEATMAPS_DIR: %(ROOT_DIR)s/heatmaps +REDACTIONS_DIR: %(ROOT_DIR)s/redactions +BLACKLIST: %(ROOT_DIR)s/config/blacklist.tsv + +