diff --git a/Makefile b/Makefile
index 56d020b..19c6568 100644
--- a/Makefile
+++ b/Makefile
@@ -61,4 +61,10 @@ help:
 	@uv run python -c "import re; \
 	[[print(f'\033[36m{m[0]:<20}\033[0m {m[1]}') for m in re.findall(r'^([a-zA-Z_-]+):.*?## (.*)$$', open(makefile).read(), re.M)] for makefile in ('$(MAKEFILE_LIST)').strip().split()]"
 
+.PHONY: deploy
+deploy: ## Deploy to site
+	@echo "🚀 Deploying ComposeAPI to Site"
+	@kubectl kustomize kustomize/overlays/compose-api-rke | kubectl apply -f -
+
+
 .DEFAULT_GOAL := help
diff --git a/compose_api/api/routers/templates/copasi.jinja b/compose_api/api/routers/templates/copasi.jinja
index 5e02e70..20287c6 100644
--- a/compose_api/api/routers/templates/copasi.jinja
+++ b/compose_api/api/routers/templates/copasi.jinja
@@ -2,7 +2,7 @@
     "state": {
         "time_course": {
             "_type": "step",
-            "address": "local:pbest.registry.simulators.copasi_process.CopasiUTCStep",
+            "address": "local:pbsim_common.simulators.copasi_process.CopasiUTCStep",
             "config": {
                 "model_source": "interesting.sbml",
                 "sim_start_time": {{ start_time }},
diff --git a/compose_api/api/routers/templates/tellurium.jinja b/compose_api/api/routers/templates/tellurium.jinja
index e7a598c..e02eaab 100644
--- a/compose_api/api/routers/templates/tellurium.jinja
+++ b/compose_api/api/routers/templates/tellurium.jinja
@@ -2,7 +2,7 @@
     "state": {
         "time_course": {
             "_type": "step",
-            "address": "local:pbest.registry.simulators.tellurium_process.TelluriumUTCStep",
+            "address": "local:pbsim_common.simulators.tellurium_process.TelluriumUTCStep",
             "config": {
                 "model_source": "interesting.sbml",
                 "sim_start_time": {{ start_time }},
diff --git a/compose_api/common/hpc/models.py b/compose_api/common/hpc/models.py
index e2cb574..ac74e8c 100644
--- a/compose_api/common/hpc/models.py
+++ b/compose_api/common/hpc/models.py
@@ -49,13 +49,16 @@ def get_sacct_format_string() -> str:
     def from_sacct_formatted_output(cls, line: str) -> "SlurmJob":
         # Split the line by delimiter
         fields = line.strip().split("|")
+        job_state = fields[4]
+        if "cancelled" in job_state.lower():  # Has 'cancelled by <User-ID>' which trips up mappings from string to Enum
+            job_state = "CANCELLED"  # so just set it to 'canceled'
         # Map fields to model attributes
         return cls(
             job_id=int(fields[0]),
             name=fields[1],
             account=fields[2],
             user_name=fields[3],
-            job_state=fields[4],
+            job_state=job_state,
             start_time=fields[5],
             end_time=fields[6],
             elapsed=fields[7],
diff --git a/compose_api/common/hpc/slurm_service.py b/compose_api/common/hpc/slurm_service.py
index 5167c93..8b5e584 100644
--- a/compose_api/common/hpc/slurm_service.py
+++ b/compose_api/common/hpc/slurm_service.py
@@ -32,9 +32,7 @@ async def get_job_status_squeue(self, job_ids: list[int] | None = None) -> list[
         return slurm_jobs
 
     async def get_job_status_sacct(self, job_ids: list[int] | None = None) -> list[SlurmJob]:
-        command = (
-            f'sacct -u $USER --parsable --delimiter="|" --noheader --format="{SlurmJob.get_sacct_format_string()}"'
-        )
+        command = f'sacct -u $USER --parsable --allocations --delimiter="|" --noheader --format="{SlurmJob.get_sacct_format_string()}"'  # noqa: E501
         if job_ids is not None:
             job_ids_str = ",".join(map(str, job_ids)) if len(job_ids) > 1 else str(job_ids[0])
             command = command + f" -j {job_ids_str}"
diff --git a/compose_api/db/tables/hpc_tables.py b/compose_api/db/tables/hpc_tables.py
index 1c6d74f..9ec5886 100644
--- a/compose_api/db/tables/hpc_tables.py
+++ b/compose_api/db/tables/hpc_tables.py
@@ -25,6 +25,11 @@ class JobStatusDB(enum.Enum):
     COMPLETED = "completed"
     FAILED = "failed"
     PENDING = "pending"
+    CANCELLED = "cancelled"
+    OUT_OF_MEMORY = "out_of_memory"
+    SUSPENDED = "suspended"
+    TIMEOUT = "timeout"
+    UNKNOWN = "unknown"
 
     def to_job_status(self) -> JobStatus:
         return JobStatus(self.value)
diff --git a/compose_api/simulation/handlers.py b/compose_api/simulation/handlers.py
index 2b393bd..628691c 100644
--- a/compose_api/simulation/handlers.py
+++ b/compose_api/simulation/handlers.py
@@ -126,7 +126,7 @@ async def run_curated_pbif(
     # Create OMEX with all necessary files
     with tempfile.TemporaryDirectory(delete=False) as tmp_dir:
         with zipfile.ZipFile(tmp_dir + "/input.omex", "w") as omex:
-            omex.writestr(data=templated_pbif, zinfo_or_arcname=f"{simulator_name}.pbif")
+            omex.writestr(data=templated_pbif, zinfo_or_arcname=f"{simulator_name}.pbg")
             if use_interesting:
                 omex.write(loaded_sbml.absolute(), arcname="interesting.sbml")
             else:
diff --git a/compose_api/simulation/job_monitor.py b/compose_api/simulation/job_monitor.py
index fe4090b..c561ae9 100644
--- a/compose_api/simulation/job_monitor.py
+++ b/compose_api/simulation/job_monitor.py
@@ -100,15 +100,26 @@ async def update_running_jobs(self) -> None:
             slurm_job = slurm_job_map.get(hpc_run.slurmjobid)
             if not slurm_job or not slurm_job.job_state:
                 continue
-            new_status = JobStatus(slurm_job.job_state.lower())
-            if new_status == hpc_run.status:
-                logger.debug(f"HpcRun {hpc_run.database_id} is still running with status {new_status}")
-                continue
-            if hpc_run.status != new_status:
+            try:
+                new_status = JobStatus(slurm_job.job_state.lower())
+                if new_status == hpc_run.status:
+                    logger.debug(f"HpcRun {hpc_run.database_id} is still running with status {new_status}")
+                    continue
+                if hpc_run.status != new_status:
+                    await self.database_service.get_hpc_db().update_hpcrun_status(
+                        hpcrun_id=hpc_run.database_id, new_slurm_job=slurm_job
+                    )
+                    logger.info(f"Updated HpcRun {hpc_run.database_id} status to {new_status}")
+            except ValueError as e:
+                logger.exception(
+                    f"Error updating HpcRun {hpc_run.database_id} to status {slurm_job.job_state.lower()}."
+                    f" Setting status to UNKNOWN.",
+                    exc_info=e,
+                )
+                slurm_job.job_state = JobStatus.UNKNOWN.upper()
                 await self.database_service.get_hpc_db().update_hpcrun_status(
                     hpcrun_id=hpc_run.database_id, new_slurm_job=slurm_job
                 )
-                logger.info(f"Updated HpcRun {hpc_run.database_id} status to {new_status}")
 
             if slurm_job.job_id in self.internal_listeners:
                 self.internal_listeners[slurm_job.job_id].put_nowait(hpc_run)
diff --git a/compose_api/simulation/models.py b/compose_api/simulation/models.py
index e08cc7e..3101c6c 100644
--- a/compose_api/simulation/models.py
+++ b/compose_api/simulation/models.py
@@ -64,6 +64,11 @@ class JobStatus(StrEnum):
     COMPLETED = "completed"
     FAILED = "failed"
     PENDING = "pending"
+    CANCELLED = "cancelled"
+    OUT_OF_MEMORY = "out_of_memory"
+    SUSPENDED = "suspended"
+    TIMEOUT = "timeout"
+    UNKNOWN = "unknown"
 
 
 class HpcRun(BaseModel):
diff --git a/compose_api/simulation/simulation_service.py b/compose_api/simulation/simulation_service.py
index 4b0a584..4f2d217 100644
--- a/compose_api/simulation/simulation_service.py
+++ b/compose_api/simulation/simulation_service.py
@@ -163,8 +163,8 @@ async def build_container(self, simulator_version: SimulatorVersion, random_str:
                     #SBATCH --cpus-per-task 1
                     #SBATCH --mem=4GB
                     #SBATCH --nodelist={settings.slurm_build_node}
-                    #SBATCH --partition=general
-                    #SBATCH --qos=general
+                    #SBATCH --partition={settings.slurm_partition}
+                    #SBATCH --qos={settings.slurm_qos}
                     #SBATCH --output={get_slurm_log_file(slurm_job_name=slurm_job_name)}
 
                     set -e
diff --git a/compose_api/version.py b/compose_api/version.py
index a8d4557..4ad67eb 100644
--- a/compose_api/version.py
+++ b/compose_api/version.py
@@ -1 +1 @@
-__version__ = "0.3.5"
+__version__ = "0.3.8"
diff --git a/kustomize/config/compose-api-rke/shared.env b/kustomize/config/compose-api-rke/shared.env
index 7a2829b..23cb455 100644
--- a/kustomize/config/compose-api-rke/shared.env
+++ b/kustomize/config/compose-api-rke/shared.env
@@ -2,10 +2,10 @@
 SLURM_SUBMIT_HOST=hamantis.cam.uchc.edu
 SLURM_SUBMIT_USER=crbmapi
 #SLURM_SUBMIT_KEY_PATH=/run/secrets/slurmsubmitkeyfile/ssh-privatekey
-SLURM_PARTITION=general
-SLURM_NODE_LIST=mantis-039
-SLURM_BUILD_NODE=mantis-007
-SLURM_QOS=general
+SLURM_PARTITION=vcell
+SLURM_NODE_LIST=mantis-042
+SLURM_BUILD_NODE=mantis-042
+SLURM_QOS=vcell
 SLURM_LOG_BASE_PATH=/home/FCAM/crbmapi/compose_api/prod/htclogs
 SLURM_SBATCH_BASE_PATH=/home/FCAM/crbmapi/compose_api/prod/slurm_sbatch
 HPC_IMAGE_BASE_PATH=/home/FCAM/crbmapi/compose_api/prod/images
diff --git a/kustomize/overlays/compose-api-rke/kustomization.yaml b/kustomize/overlays/compose-api-rke/kustomization.yaml
index 5da563e..5c773b4 100644
--- a/kustomize/overlays/compose-api-rke/kustomization.yaml
+++ b/kustomize/overlays/compose-api-rke/kustomization.yaml
@@ -5,7 +5,7 @@ namespace: compose-api-rke
 
 images:
   - name: ghcr.io/biosimulations/compose-api
-    newTag: 0.3.4
+    newTag: 0.3.8
   - name: docker.io/library/mongo
     newTag: 8.0.12
 
diff --git a/pyproject.toml b/pyproject.toml
index 7aa3f8f..3c8fd4d 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [project]
 name = "compose-api"
-version = "0.3.5"
+version = "0.3.8"
 description = "An API server for reproducible biological workflows and cosimulations."
 authors = [{ name = "Jim Schaff", email = "schaff@uchc.edu" }]
 requires-python = ">=3.13.2,<4.0"
@@ -36,7 +36,7 @@ dependencies = [
     "python-libsedml>=2.0.33",
     "biosimulators-utils>=0.2.3",
     "python-libsbml>=5.20.5",
-    "pbest==0.2.8",
+    "pbest==0.4.0",
 ]
 
 [project.urls]
diff --git a/tests/fixtures/resources/phase_cycle.omex b/tests/fixtures/resources/phase_cycle.omex
index cc02047..55ee4e0 100644
Binary files a/tests/fixtures/resources/phase_cycle.omex and b/tests/fixtures/resources/phase_cycle.omex differ
diff --git a/tests/fixtures/resources/readdy.omex b/tests/fixtures/resources/readdy.omex
index 0ee6203..2fde1f2 100644
Binary files a/tests/fixtures/resources/readdy.omex and b/tests/fixtures/resources/readdy.omex differ
diff --git a/uv.lock b/uv.lock
index 7836d5f..f2860c4 100644
--- a/uv.lock
+++ b/uv.lock
@@ -1,6 +1,10 @@
 version = 1
 revision = 3
 requires-python = ">=3.13.2, <4.0"
+resolution-markers = [
+    "python_full_version >= '3.14'",
+    "python_full_version < '3.14'",
+]
 
 [[package]]
 name = "alabaster"
@@ -75,6 +79,62 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/81/29/5ecc3a15d5a33e31b26c11426c45c501e439cb865d0bff96315d86443b78/appnope-0.1.4-py2.py3-none-any.whl", hash = "sha256:502575ee11cd7a28c0205f379b525beefebab9d161b7c964670864014ed7213c", size = 4321, upload-time = "2024-02-06T09:43:09.663Z" },
 ]
 
+[[package]]
+name = "argon2-cffi"
+version = "25.1.0"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
+    { name = "argon2-cffi-bindings" },
+]
+sdist = { url = "https://files.pythonhosted.org/packages/0e/89/ce5af8a7d472a67cc819d5d998aa8c82c5d860608c4db9f46f1162d7dab9/argon2_cffi-25.1.0.tar.gz", hash = "sha256:694ae5cc8a42f4c4e2bf2ca0e64e51e23a040c6a517a85074683d3959e1346c1", size = 45706, upload-time = "2025-06-03T06:55:32.073Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/4f/d3/a8b22fa575b297cd6e3e3b0155c7e25db170edf1c74783d6a31a2490b8d9/argon2_cffi-25.1.0-py3-none-any.whl", hash = "sha256:fdc8b074db390fccb6eb4a3604ae7231f219aa669a2652e0f20e16ba513d5741", size = 14657, upload-time = "2025-06-03T06:55:30.804Z" },
+]
+
+[[package]]
+name = "argon2-cffi-bindings"
+version = "25.1.0"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
+    { name = "cffi" },
+]
+sdist = { url = "https://files.pythonhosted.org/packages/5c/2d/db8af0df73c1cf454f71b2bbe5e356b8c1f8041c979f505b3d3186e520a9/argon2_cffi_bindings-25.1.0.tar.gz", hash = "sha256:b957f3e6ea4d55d820e40ff76f450952807013d361a65d7f28acc0acbf29229d", size = 1783441, upload-time = "2025-07-30T10:02:05.147Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/60/97/3c0a35f46e52108d4707c44b95cfe2afcafc50800b5450c197454569b776/argon2_cffi_bindings-25.1.0-cp314-cp314t-macosx_10_13_universal2.whl", hash = "sha256:3d3f05610594151994ca9ccb3c771115bdb4daef161976a266f0dd8aa9996b8f", size = 54393, upload-time = "2025-07-30T10:01:40.97Z" },
+    { url = "https://files.pythonhosted.org/packages/9d/f4/98bbd6ee89febd4f212696f13c03ca302b8552e7dbf9c8efa11ea4a388c3/argon2_cffi_bindings-25.1.0-cp314-cp314t-macosx_10_13_x86_64.whl", hash = "sha256:8b8efee945193e667a396cbc7b4fb7d357297d6234d30a489905d96caabde56b", size = 29328, upload-time = "2025-07-30T10:01:41.916Z" },
+    { url = "https://files.pythonhosted.org/packages/43/24/90a01c0ef12ac91a6be05969f29944643bc1e5e461155ae6559befa8f00b/argon2_cffi_bindings-25.1.0-cp314-cp314t-macosx_11_0_arm64.whl", hash = "sha256:3c6702abc36bf3ccba3f802b799505def420a1b7039862014a65db3205967f5a", size = 31269, upload-time = "2025-07-30T10:01:42.716Z" },
+    { url = "https://files.pythonhosted.org/packages/d4/d3/942aa10782b2697eee7af5e12eeff5ebb325ccfb86dd8abda54174e377e4/argon2_cffi_bindings-25.1.0-cp314-cp314t-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl", hash = "sha256:a1c70058c6ab1e352304ac7e3b52554daadacd8d453c1752e547c76e9c99ac44", size = 86558, upload-time = "2025-07-30T10:01:43.943Z" },
+    { url = "https://files.pythonhosted.org/packages/0d/82/b484f702fec5536e71836fc2dbc8c5267b3f6e78d2d539b4eaa6f0db8bf8/argon2_cffi_bindings-25.1.0-cp314-cp314t-manylinux_2_26_x86_64.manylinux_2_28_x86_64.whl", hash = "sha256:e2fd3bfbff3c5d74fef31a722f729bf93500910db650c925c2d6ef879a7e51cb", size = 92364, upload-time = "2025-07-30T10:01:44.887Z" },
+    { url = "https://files.pythonhosted.org/packages/c9/c1/a606ff83b3f1735f3759ad0f2cd9e038a0ad11a3de3b6c673aa41c24bb7b/argon2_cffi_bindings-25.1.0-cp314-cp314t-musllinux_1_2_aarch64.whl", hash = "sha256:c4f9665de60b1b0e99bcd6be4f17d90339698ce954cfd8d9cf4f91c995165a92", size = 85637, upload-time = "2025-07-30T10:01:46.225Z" },
+    { url = "https://files.pythonhosted.org/packages/44/b4/678503f12aceb0262f84fa201f6027ed77d71c5019ae03b399b97caa2f19/argon2_cffi_bindings-25.1.0-cp314-cp314t-musllinux_1_2_x86_64.whl", hash = "sha256:ba92837e4a9aa6a508c8d2d7883ed5a8f6c308c89a4790e1e447a220deb79a85", size = 91934, upload-time = "2025-07-30T10:01:47.203Z" },
+    { url = "https://files.pythonhosted.org/packages/f0/c7/f36bd08ef9bd9f0a9cff9428406651f5937ce27b6c5b07b92d41f91ae541/argon2_cffi_bindings-25.1.0-cp314-cp314t-win32.whl", hash = "sha256:84a461d4d84ae1295871329b346a97f68eade8c53b6ed9a7ca2d7467f3c8ff6f", size = 28158, upload-time = "2025-07-30T10:01:48.341Z" },
+    { url = "https://files.pythonhosted.org/packages/b3/80/0106a7448abb24a2c467bf7d527fe5413b7fdfa4ad6d6a96a43a62ef3988/argon2_cffi_bindings-25.1.0-cp314-cp314t-win_amd64.whl", hash = "sha256:b55aec3565b65f56455eebc9b9f34130440404f27fe21c3b375bf1ea4d8fbae6", size = 32597, upload-time = "2025-07-30T10:01:49.112Z" },
+    { url = "https://files.pythonhosted.org/packages/05/b8/d663c9caea07e9180b2cb662772865230715cbd573ba3b5e81793d580316/argon2_cffi_bindings-25.1.0-cp314-cp314t-win_arm64.whl", hash = "sha256:87c33a52407e4c41f3b70a9c2d3f6056d88b10dad7695be708c5021673f55623", size = 28231, upload-time = "2025-07-30T10:01:49.92Z" },
+    { url = "https://files.pythonhosted.org/packages/1d/57/96b8b9f93166147826da5f90376e784a10582dd39a393c99bb62cfcf52f0/argon2_cffi_bindings-25.1.0-cp39-abi3-macosx_10_9_universal2.whl", hash = "sha256:aecba1723ae35330a008418a91ea6cfcedf6d31e5fbaa056a166462ff066d500", size = 54121, upload-time = "2025-07-30T10:01:50.815Z" },
+    { url = "https://files.pythonhosted.org/packages/0a/08/a9bebdb2e0e602dde230bdde8021b29f71f7841bd54801bcfd514acb5dcf/argon2_cffi_bindings-25.1.0-cp39-abi3-macosx_10_9_x86_64.whl", hash = "sha256:2630b6240b495dfab90aebe159ff784d08ea999aa4b0d17efa734055a07d2f44", size = 29177, upload-time = "2025-07-30T10:01:51.681Z" },
+    { url = "https://files.pythonhosted.org/packages/b6/02/d297943bcacf05e4f2a94ab6f462831dc20158614e5d067c35d4e63b9acb/argon2_cffi_bindings-25.1.0-cp39-abi3-macosx_11_0_arm64.whl", hash = "sha256:7aef0c91e2c0fbca6fc68e7555aa60ef7008a739cbe045541e438373bc54d2b0", size = 31090, upload-time = "2025-07-30T10:01:53.184Z" },
+    { url = "https://files.pythonhosted.org/packages/c1/93/44365f3d75053e53893ec6d733e4a5e3147502663554b4d864587c7828a7/argon2_cffi_bindings-25.1.0-cp39-abi3-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl", hash = "sha256:1e021e87faa76ae0d413b619fe2b65ab9a037f24c60a1e6cc43457ae20de6dc6", size = 81246, upload-time = "2025-07-30T10:01:54.145Z" },
+    { url = "https://files.pythonhosted.org/packages/09/52/94108adfdd6e2ddf58be64f959a0b9c7d4ef2fa71086c38356d22dc501ea/argon2_cffi_bindings-25.1.0-cp39-abi3-manylinux_2_26_x86_64.manylinux_2_28_x86_64.whl", hash = "sha256:d3e924cfc503018a714f94a49a149fdc0b644eaead5d1f089330399134fa028a", size = 87126, upload-time = "2025-07-30T10:01:55.074Z" },
+    { url = "https://files.pythonhosted.org/packages/72/70/7a2993a12b0ffa2a9271259b79cc616e2389ed1a4d93842fac5a1f923ffd/argon2_cffi_bindings-25.1.0-cp39-abi3-musllinux_1_2_aarch64.whl", hash = "sha256:c87b72589133f0346a1cb8d5ecca4b933e3c9b64656c9d175270a000e73b288d", size = 80343, upload-time = "2025-07-30T10:01:56.007Z" },
+    { url = "https://files.pythonhosted.org/packages/78/9a/4e5157d893ffc712b74dbd868c7f62365618266982b64accab26bab01edc/argon2_cffi_bindings-25.1.0-cp39-abi3-musllinux_1_2_x86_64.whl", hash = "sha256:1db89609c06afa1a214a69a462ea741cf735b29a57530478c06eb81dd403de99", size = 86777, upload-time = "2025-07-30T10:01:56.943Z" },
+    { url = "https://files.pythonhosted.org/packages/74/cd/15777dfde1c29d96de7f18edf4cc94c385646852e7c7b0320aa91ccca583/argon2_cffi_bindings-25.1.0-cp39-abi3-win32.whl", hash = "sha256:473bcb5f82924b1becbb637b63303ec8d10e84c8d241119419897a26116515d2", size = 27180, upload-time = "2025-07-30T10:01:57.759Z" },
+    { url = "https://files.pythonhosted.org/packages/e2/c6/a759ece8f1829d1f162261226fbfd2c6832b3ff7657384045286d2afa384/argon2_cffi_bindings-25.1.0-cp39-abi3-win_amd64.whl", hash = "sha256:a98cd7d17e9f7ce244c0803cad3c23a7d379c301ba618a5fa76a67d116618b98", size = 31715, upload-time = "2025-07-30T10:01:58.56Z" },
+    { url = "https://files.pythonhosted.org/packages/42/b9/f8d6fa329ab25128b7e98fd83a3cb34d9db5b059a9847eddb840a0af45dd/argon2_cffi_bindings-25.1.0-cp39-abi3-win_arm64.whl", hash = "sha256:b0fdbcf513833809c882823f98dc2f931cf659d9a1429616ac3adebb49f5db94", size = 27149, upload-time = "2025-07-30T10:01:59.329Z" },
+]
+
+[[package]]
+name = "arrow"
+version = "1.4.0"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
+    { name = "python-dateutil" },
+    { name = "tzdata" },
+]
+sdist = { url = "https://files.pythonhosted.org/packages/b9/33/032cdc44182491aa708d06a68b62434140d8c50820a087fac7af37703357/arrow-1.4.0.tar.gz", hash = "sha256:ed0cc050e98001b8779e84d461b0098c4ac597e88704a655582b21d116e526d7", size = 152931, upload-time = "2025-10-18T17:46:46.761Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/ed/c9/d7977eaacb9df673210491da99e6a247e93df98c715fc43fd136ce1d3d33/arrow-1.4.0-py3-none-any.whl", hash = "sha256:749f0769958ebdc79c173ff0b0670d59051a535fa26e8eba02953dc19eb43205", size = 68797, upload-time = "2025-10-18T17:46:45.663Z" },
+]
+
 [[package]]
 name = "asttokens"
 version = "3.0.1"
@@ -163,14 +223,29 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/71/cc/18245721fa7747065ab478316c7fea7c74777d07f37ae60db2e84f8172e8/beartype-0.22.9-py3-none-any.whl", hash = "sha256:d16c9bbc61ea14637596c5f6fbff2ee99cbe3573e46a716401734ef50c3060c2", size = 1333658, upload-time = "2025-12-13T06:50:28.266Z" },
 ]
 
+[[package]]
+name = "beautifulsoup4"
+version = "4.14.3"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
+    { name = "soupsieve" },
+    { name = "typing-extensions" },
+]
+sdist = { url = "https://files.pythonhosted.org/packages/c3/b0/1c6a16426d389813b48d95e26898aff79abbde42ad353958ad95cc8c9b21/beautifulsoup4-4.14.3.tar.gz", hash = "sha256:6292b1c5186d356bba669ef9f7f051757099565ad9ada5dd630bd9de5fa7fb86", size = 627737, upload-time = "2025-11-30T15:08:26.084Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/1a/39/47f9197bdd44df24d67ac8893641e16f386c984a0619ef2ee4c51fbbc019/beautifulsoup4-4.14.3-py3-none-any.whl", hash = "sha256:0918bfe44902e6ad8d57732ba310582e98da931428d231a5ecb9e7c703a735bb", size = 107721, upload-time = "2025-11-30T15:08:24.087Z" },
+]
+
 [[package]]
 name = "bigraph-schema"
-version = "0.0.77"
+version = "1.0.14"
 source = { registry = "https://pypi.org/simple" }
 dependencies = [
     { name = "fire" },
+    { name = "ipdb" },
     { name = "numpy" },
     { name = "orjson" },
+    { name = "pandas" },
     { name = "parsimonious" },
     { name = "pint" },
     { name = "plum-dispatch" },
@@ -179,9 +254,9 @@ dependencies = [
     { name = "setuptools" },
     { name = "twine" },
 ]
-sdist = { url = "https://files.pythonhosted.org/packages/9c/fa/1aaad9d4ccec44f92670b880f13a4dc35e04d0951626f9688d2ce2e2147d/bigraph_schema-0.0.77.tar.gz", hash = "sha256:4dc42288f0a5fe140a5e1b6e9fb2a2137e6c30eed6ce7bcda2e47e5858f20687", size = 54309, upload-time = "2025-11-18T09:11:55.816Z" }
+sdist = { url = "https://files.pythonhosted.org/packages/36/36/f014e430d1e59a7fb50db64575869cfa528e3067c5835afd7c49e9e13fd1/bigraph_schema-1.0.14.tar.gz", hash = "sha256:5fe093a9d0ba1732fc242bbe989b4481cc07be316047d319f73dbb4299da2ed4", size = 40673, upload-time = "2026-03-14T02:33:00.393Z" }
 wheels = [
-    { url = "https://files.pythonhosted.org/packages/4d/28/ff47fc469d8324f92a9928f7d87d262782f9b6308a340147ba2a98f5dcf3/bigraph_schema-0.0.77-py3-none-any.whl", hash = "sha256:7cf511addbbe1022b19db287b7e973480b263922c3533c560d66ac55e2939f26", size = 57655, upload-time = "2025-11-18T09:11:54.511Z" },
+    { url = "https://files.pythonhosted.org/packages/e6/4a/1e82cd4b06e2ab73b4488fae7fec8cdfe892fed486cbe95fe86fa69d4a13/bigraph_schema-1.0.14-py3-none-any.whl", hash = "sha256:c2cc1725705ad1d451250c75991735846646fd92734dc919d26b98a492274cd7", size = 48784, upload-time = "2026-03-14T02:32:59.295Z" },
 ]
 
 [[package]]
@@ -255,6 +330,23 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/41/7d/8f937bc34c8d35c9203271ae13223a0c49d7a4bf851ff063b15a31fd1555/biosimulators_utils-0.2.3-py3-none-any.whl", hash = "sha256:d6e712f815d7f2535790d5e3917b3f687045a00301552f8fcdb8ca54b2caaf34", size = 586483, upload-time = "2024-10-10T18:39:11.626Z" },
 ]
 
+[[package]]
+name = "bleach"
+version = "6.3.0"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
+    { name = "webencodings" },
+]
+sdist = { url = "https://files.pythonhosted.org/packages/07/18/3c8523962314be6bf4c8989c79ad9531c825210dd13a8669f6b84336e8bd/bleach-6.3.0.tar.gz", hash = "sha256:6f3b91b1c0a02bb9a78b5a454c92506aa0fdf197e1d5e114d2e00c6f64306d22", size = 203533, upload-time = "2025-10-27T17:57:39.211Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/cd/3a/577b549de0cc09d95f11087ee63c739bba856cd3952697eec4c4bb91350a/bleach-6.3.0-py3-none-any.whl", hash = "sha256:fe10ec77c93ddf3d13a73b035abaac7a9f5e436513864ccdad516693213c65d6", size = 164437, upload-time = "2025-10-27T17:57:37.538Z" },
+]
+
+[package.optional-dependencies]
+css = [
+    { name = "tinycss2" },
+]
+
 [[package]]
 name = "cachetools"
 version = "6.2.4"
@@ -418,7 +510,7 @@ wheels = [
 
 [[package]]
 name = "compose-api"
-version = "0.3.5"
+version = "0.3.8"
 source = { editable = "." }
 dependencies = [
     { name = "alembic" },
@@ -492,7 +584,7 @@ requires-dist = [
     { name = "nats-py", specifier = ">=2.10.0,<3" },
     { name = "nbformat", specifier = ">=5.10.4,<6" },
     { name = "numpy", specifier = ">=2.3.1,<3" },
-    { name = "pbest", specifier = "==0.2.8" },
+    { name = "pbest", specifier = "==0.4.0" },
     { name = "polars-lts-cpu", extras = ["pyarrow"], specifier = ">=1.31.0,<2" },
     { name = "pydantic", specifier = ">=2.11.5,<3" },
     { name = "pydantic-settings", specifier = ">=2.9.1,<3" },
@@ -539,16 +631,16 @@ docs = [
 
 [[package]]
 name = "compose-api-client"
-version = "0.1.3"
+version = "0.1.8"
 source = { registry = "https://pypi.org/simple" }
 dependencies = [
     { name = "attrs" },
     { name = "httpx" },
     { name = "python-dateutil" },
 ]
-sdist = { url = "https://files.pythonhosted.org/packages/e3/3c/5b38a7f4e2b3062909acc710813ee70106d4ae279c0e315db8219100064a/compose_api_client-0.1.3.tar.gz", hash = "sha256:8346a7279afe0d746991cf6f4369b8e42859c32c812e593aeb07437d47f1c7c9", size = 13634, upload-time = "2026-02-18T14:26:38.864Z" }
+sdist = { url = "https://files.pythonhosted.org/packages/ba/c6/1a3537f83a5a364ef02f3d191651386d8d912f61aec5a84cf2e8db807cc3/compose_api_client-0.1.8.tar.gz", hash = "sha256:2a7069889676334191a31341f51b982d4c3a365aec76ddded4b6aa5258ebcbbb", size = 13891, upload-time = "2026-03-27T17:25:21.035Z" }
 wheels = [
-    { url = "https://files.pythonhosted.org/packages/af/df/d9e1f6b1f7ceb2b6a0d87f69ef3db53204be2920773206429caeeb8442a7/compose_api_client-0.1.3-py3-none-any.whl", hash = "sha256:838423ccd0360f1da9952d11e05f94cc4f39c43901013320c67cfac518eb3272", size = 36653, upload-time = "2026-02-18T14:26:37.663Z" },
+    { url = "https://files.pythonhosted.org/packages/27/fc/6459378ec43f41aadb608130f77efcc235ea7fa954d495cef0040aea9628/compose_api_client-0.1.8-py3-none-any.whl", hash = "sha256:8013acbbb59d3a6c3fc46d6dfea865a7bdbe2bde5139258ad0d3dc0c687e5e86", size = 36248, upload-time = "2026-03-27T17:25:19.961Z" },
 ]
 
 [[package]]
@@ -776,6 +868,15 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/4e/8c/f3147f5c4b73e7550fe5f9352eaa956ae838d5c51eb58e7a25b9f3e2643b/decorator-5.2.1-py3-none-any.whl", hash = "sha256:d316bb415a2d9e2d2b3abcc4084c6502fc09240e292cd76a76afc106a1c8e04a", size = 9190, upload-time = "2025-02-24T04:41:32.565Z" },
 ]
 
+[[package]]
+name = "defusedxml"
+version = "0.7.1"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/0f/d5/c66da9b79e5bdb124974bfe172b4daf3c984ebd9c2a06e2b8a4dc7331c72/defusedxml-0.7.1.tar.gz", hash = "sha256:1bb3032db185915b62d7c6209c5a8792be6a32ab2fedacc84e01b52c51aa3e69", size = 75520, upload-time = "2021-03-08T10:59:26.269Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/07/6c/aa3f2f849e01cb6a001cd8554a88d4c77c5c1a31c95bdf1cf9301e6d9ef4/defusedxml-0.7.1-py2.py3-none-any.whl", hash = "sha256:a352e7e428770286cc899e2542b6cdaedb2b4953ff269a210103ec58f6198a61", size = 25604, upload-time = "2021-03-08T10:59:24.45Z" },
+]
+
 [[package]]
 name = "deptry"
 version = "0.23.1"
@@ -1001,6 +1102,15 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/c7/4e/ce75a57ff3aebf6fc1f4e9d508b8e5810618a33d900ad6c19eb30b290b97/fonttools-4.61.1-py3-none-any.whl", hash = "sha256:17d2bf5d541add43822bcf0c43d7d847b160c9bb01d15d5007d84e2217aaa371", size = 1148996, upload-time = "2025-12-12T17:31:21.03Z" },
 ]
 
+[[package]]
+name = "fqdn"
+version = "1.5.1"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/30/3e/a80a8c077fd798951169626cde3e239adeba7dab75deb3555716415bd9b0/fqdn-1.5.1.tar.gz", hash = "sha256:105ed3677e767fb5ca086a0c1f4bb66ebc3c100be518f0e0d755d9eae164d89f", size = 6015, upload-time = "2021-03-11T07:16:29.08Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/cf/58/8acf1b3e91c58313ce5cb67df61001fc9dcd21be4fadb76c1a2d540e09ed/fqdn-1.5.1-py3-none-any.whl", hash = "sha256:3a179af3761e4df6eb2e026ff9e1a3033d3587bf980a0b1b2e1e5d08d7358014", size = 9121, upload-time = "2021-03-11T07:16:28.351Z" },
+]
+
 [[package]]
 name = "ghp-import"
 version = "2.1.0"
@@ -1247,6 +1357,34 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/d9/33/1f075bf72b0b747cb3288d011319aaf64083cf2efef8354174e3ed4540e2/ipython_pygments_lexers-1.1.1-py3-none-any.whl", hash = "sha256:a9462224a505ade19a605f71f8fa63c2048833ce50abc86768a0d81d876dc81c", size = 8074, upload-time = "2025-01-17T11:24:33.271Z" },
 ]
 
+[[package]]
+name = "ipywidgets"
+version = "8.1.8"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
+    { name = "comm" },
+    { name = "ipython" },
+    { name = "jupyterlab-widgets" },
+    { name = "traitlets" },
+    { name = "widgetsnbextension" },
+]
+sdist = { url = "https://files.pythonhosted.org/packages/4c/ae/c5ce1edc1afe042eadb445e95b0671b03cee61895264357956e61c0d2ac0/ipywidgets-8.1.8.tar.gz", hash = "sha256:61f969306b95f85fba6b6986b7fe45d73124d1d9e3023a8068710d47a22ea668", size = 116739, upload-time = "2025-11-01T21:18:12.393Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/56/6d/0d9848617b9f753b87f214f1c682592f7ca42de085f564352f10f0843026/ipywidgets-8.1.8-py3-none-any.whl", hash = "sha256:ecaca67aed704a338f88f67b1181b58f821ab5dc89c1f0f5ef99db43c1c2921e", size = 139808, upload-time = "2025-11-01T21:18:10.956Z" },
+]
+
+[[package]]
+name = "isoduration"
+version = "20.11.0"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
+    { name = "arrow" },
+]
+sdist = { url = "https://files.pythonhosted.org/packages/7c/1a/3c8edc664e06e6bd06cce40c6b22da5f1429aa4224d0c590f3be21c91ead/isoduration-20.11.0.tar.gz", hash = "sha256:ac2f9015137935279eac671f94f89eb00584f940f5dc49462a0c4ee692ba1bd9", size = 11649, upload-time = "2020-11-01T11:00:00.312Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/7b/55/e5326141505c5d5e34c5e0935d2908a74e4561eca44108fbfb9c13d2911a/isoduration-20.11.0-py3-none-any.whl", hash = "sha256:b2904c2a4228c3d44f409c8ae8e2370eb21a26f7ac2ec5446df141dde3452042", size = 11321, upload-time = "2020-11-01T10:59:58.02Z" },
+]
+
 [[package]]
 name = "jaraco-classes"
 version = "3.4.0"
@@ -1313,6 +1451,24 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/62/a1/3d680cbfd5f4b8f15abc1d571870c5fc3e594bb582bc3b64ea099db13e56/jinja2-3.1.6-py3-none-any.whl", hash = "sha256:85ece4451f492d0c13c5dd7c13a64681a86afae63a5f347908daf103ce6d2f67", size = 134899, upload-time = "2025-03-05T20:05:00.369Z" },
 ]
 
+[[package]]
+name = "json5"
+version = "0.13.0"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/77/e8/a3f261a66e4663f22700bc8a17c08cb83e91fbf086726e7a228398968981/json5-0.13.0.tar.gz", hash = "sha256:b1edf8d487721c0bf64d83c28e91280781f6e21f4a797d3261c7c828d4c165bf", size = 52441, upload-time = "2026-01-01T19:42:14.99Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/d7/9e/038522f50ceb7e74f1f991bf1b699f24b0c2bbe7c390dd36ad69f4582258/json5-0.13.0-py3-none-any.whl", hash = "sha256:9a08e1dd65f6a4d4c6fa82d216cf2477349ec2346a38fd70cc11d2557499fbcc", size = 36163, upload-time = "2026-01-01T19:42:13.962Z" },
+]
+
+[[package]]
+name = "jsonpointer"
+version = "3.0.0"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/6a/0a/eebeb1fa92507ea94016a2a790b93c2ae41a7e18778f85471dc54475ed25/jsonpointer-3.0.0.tar.gz", hash = "sha256:2b2d729f2091522d61c3b31f82e11870f60b68f43fbc705cb76bf4b832af59ef", size = 9114, upload-time = "2024-06-10T19:24:42.462Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/71/92/5e77f98553e9e75130c78900d000368476aed74276eb8ae8796f65f00918/jsonpointer-3.0.0-py2.py3-none-any.whl", hash = "sha256:13e088adc14fca8b6aa8177c044e12701e6ad4b28ff10e65f2267a90109c9942", size = 7595, upload-time = "2024-06-10T19:24:40.698Z" },
+]
+
 [[package]]
 name = "jsonschema"
 version = "4.26.0"
@@ -1328,6 +1484,19 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/69/90/f63fb5873511e014207a475e2bb4e8b2e570d655b00ac19a9a0ca0a385ee/jsonschema-4.26.0-py3-none-any.whl", hash = "sha256:d489f15263b8d200f8387e64b4c3a75f06629559fb73deb8fdfb525f2dab50ce", size = 90630, upload-time = "2026-01-07T13:41:05.306Z" },
 ]
 
+[package.optional-dependencies]
+format-nongpl = [
+    { name = "fqdn" },
+    { name = "idna" },
+    { name = "isoduration" },
+    { name = "jsonpointer" },
+    { name = "rfc3339-validator" },
+    { name = "rfc3986-validator" },
+    { name = "rfc3987-syntax" },
+    { name = "uri-template" },
+    { name = "webcolors" },
+]
+
 [[package]]
 name = "jsonschema-specifications"
 version = "2025.9.1"
@@ -1340,6 +1509,23 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/41/45/1a4ed80516f02155c51f51e8cedb3c1902296743db0bbc66608a0db2814f/jsonschema_specifications-2025.9.1-py3-none-any.whl", hash = "sha256:98802fee3a11ee76ecaca44429fda8a41bff98b00a0f2838151b113f210cc6fe", size = 18437, upload-time = "2025-09-08T01:34:57.871Z" },
 ]
 
+[[package]]
+name = "jupyter"
+version = "1.1.1"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
+    { name = "ipykernel" },
+    { name = "ipywidgets" },
+    { name = "jupyter-console" },
+    { name = "jupyterlab" },
+    { name = "nbconvert" },
+    { name = "notebook" },
+]
+sdist = { url = "https://files.pythonhosted.org/packages/58/f3/af28ea964ab8bc1e472dba2e82627d36d470c51f5cd38c37502eeffaa25e/jupyter-1.1.1.tar.gz", hash = "sha256:d55467bceabdea49d7e3624af7e33d59c37fff53ed3a350e1ac957bed731de7a", size = 5714959, upload-time = "2024-08-30T07:15:48.299Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/38/64/285f20a31679bf547b75602702f7800e74dbabae36ef324f716c02804753/jupyter-1.1.1-py2.py3-none-any.whl", hash = "sha256:7a59533c22af65439b24bbe60373a4e95af8f16ac65a6c00820ad378e3f7cc83", size = 2657, upload-time = "2024-08-30T07:15:47.045Z" },
+]
+
 [[package]]
 name = "jupyter-client"
 version = "8.8.0"
@@ -1356,6 +1542,25 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/2d/0b/ceb7694d864abc0a047649aec263878acb9f792e1fec3e676f22dc9015e3/jupyter_client-8.8.0-py3-none-any.whl", hash = "sha256:f93a5b99c5e23a507b773d3a1136bd6e16c67883ccdbd9a829b0bbdb98cd7d7a", size = 107371, upload-time = "2026-01-08T13:55:45.562Z" },
 ]
 
+[[package]]
+name = "jupyter-console"
+version = "6.6.3"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
+    { name = "ipykernel" },
+    { name = "ipython" },
+    { name = "jupyter-client" },
+    { name = "jupyter-core" },
+    { name = "prompt-toolkit" },
+    { name = "pygments" },
+    { name = "pyzmq" },
+    { name = "traitlets" },
+]
+sdist = { url = "https://files.pythonhosted.org/packages/bd/2d/e2fd31e2fc41c14e2bcb6c976ab732597e907523f6b2420305f9fc7fdbdb/jupyter_console-6.6.3.tar.gz", hash = "sha256:566a4bf31c87adbfadf22cdf846e3069b59a71ed5da71d6ba4d8aaad14a53539", size = 34363, upload-time = "2023-03-06T14:13:31.02Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/ca/77/71d78d58f15c22db16328a476426f7ac4a60d3a5a7ba3b9627ee2f7903d4/jupyter_console-6.6.3-py3-none-any.whl", hash = "sha256:309d33409fcc92ffdad25f0bcdf9a4a9daa61b6f341177570fdac03de5352485", size = 24510, upload-time = "2023-03-06T14:13:28.229Z" },
+]
+
 [[package]]
 name = "jupyter-core"
 version = "5.9.1"
@@ -1369,6 +1574,139 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/e7/e7/80988e32bf6f73919a113473a604f5a8f09094de312b9d52b79c2df7612b/jupyter_core-5.9.1-py3-none-any.whl", hash = "sha256:ebf87fdc6073d142e114c72c9e29a9d7ca03fad818c5d300ce2adc1fb0743407", size = 29032, upload-time = "2025-10-16T19:19:16.783Z" },
 ]
 
+[[package]]
+name = "jupyter-events"
+version = "0.12.0"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
+    { name = "jsonschema", extra = ["format-nongpl"] },
+    { name = "packaging" },
+    { name = "python-json-logger" },
+    { name = "pyyaml" },
+    { name = "referencing" },
+    { name = "rfc3339-validator" },
+    { name = "rfc3986-validator" },
+    { name = "traitlets" },
+]
+sdist = { url = "https://files.pythonhosted.org/packages/9d/c3/306d090461e4cf3cd91eceaff84bede12a8e52cd821c2d20c9a4fd728385/jupyter_events-0.12.0.tar.gz", hash = "sha256:fc3fce98865f6784c9cd0a56a20644fc6098f21c8c33834a8d9fe383c17e554b", size = 62196, upload-time = "2025-02-03T17:23:41.485Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/e2/48/577993f1f99c552f18a0428731a755e06171f9902fa118c379eb7c04ea22/jupyter_events-0.12.0-py3-none-any.whl", hash = "sha256:6464b2fa5ad10451c3d35fabc75eab39556ae1e2853ad0c0cc31b656731a97fb", size = 19430, upload-time = "2025-02-03T17:23:38.643Z" },
+]
+
+[[package]]
+name = "jupyter-lsp"
+version = "2.3.0"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
+    { name = "jupyter-server" },
+]
+sdist = { url = "https://files.pythonhosted.org/packages/eb/5a/9066c9f8e94ee517133cd98dba393459a16cd48bba71a82f16a65415206c/jupyter_lsp-2.3.0.tar.gz", hash = "sha256:458aa59339dc868fb784d73364f17dbce8836e906cd75fd471a325cba02e0245", size = 54823, upload-time = "2025-08-27T17:47:34.671Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/1a/60/1f6cee0c46263de1173894f0fafcb3475ded276c472c14d25e0280c18d6d/jupyter_lsp-2.3.0-py3-none-any.whl", hash = "sha256:e914a3cb2addf48b1c7710914771aaf1819d46b2e5a79b0f917b5478ec93f34f", size = 76687, upload-time = "2025-08-27T17:47:33.15Z" },
+]
+
+[[package]]
+name = "jupyter-server"
+version = "2.17.0"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
+    { name = "anyio" },
+    { name = "argon2-cffi" },
+    { name = "jinja2" },
+    { name = "jupyter-client" },
+    { name = "jupyter-core" },
+    { name = "jupyter-events" },
+    { name = "jupyter-server-terminals" },
+    { name = "nbconvert" },
+    { name = "nbformat" },
+    { name = "packaging" },
+    { name = "prometheus-client" },
+    { name = "pywinpty", marker = "os_name == 'nt'" },
+    { name = "pyzmq" },
+    { name = "send2trash" },
+    { name = "terminado" },
+    { name = "tornado" },
+    { name = "traitlets" },
+    { name = "websocket-client" },
+]
+sdist = { url = "https://files.pythonhosted.org/packages/5b/ac/e040ec363d7b6b1f11304cc9f209dac4517ece5d5e01821366b924a64a50/jupyter_server-2.17.0.tar.gz", hash = "sha256:c38ea898566964c888b4772ae1ed58eca84592e88251d2cfc4d171f81f7e99d5", size = 731949, upload-time = "2025-08-21T14:42:54.042Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/92/80/a24767e6ca280f5a49525d987bf3e4d7552bf67c8be07e8ccf20271f8568/jupyter_server-2.17.0-py3-none-any.whl", hash = "sha256:e8cb9c7db4251f51ed307e329b81b72ccf2056ff82d50524debde1ee1870e13f", size = 388221, upload-time = "2025-08-21T14:42:52.034Z" },
+]
+
+[[package]]
+name = "jupyter-server-terminals"
+version = "0.5.4"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
+    { name = "pywinpty", marker = "os_name == 'nt'" },
+    { name = "terminado" },
+]
+sdist = { url = "https://files.pythonhosted.org/packages/f4/a7/bcd0a9b0cbba88986fe944aaaf91bfda603e5a50bda8ed15123f381a3b2f/jupyter_server_terminals-0.5.4.tar.gz", hash = "sha256:bbda128ed41d0be9020349f9f1f2a4ab9952a73ed5f5ac9f1419794761fb87f5", size = 31770, upload-time = "2026-01-14T16:53:20.213Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/d1/2d/6674563f71c6320841fc300911a55143925112a72a883e2ca71fba4c618d/jupyter_server_terminals-0.5.4-py3-none-any.whl", hash = "sha256:55be353fc74a80bc7f3b20e6be50a55a61cd525626f578dcb66a5708e2007d14", size = 13704, upload-time = "2026-01-14T16:53:18.738Z" },
+]
+
+[[package]]
+name = "jupyterlab"
+version = "4.5.6"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
+    { name = "async-lru" },
+    { name = "httpx" },
+    { name = "ipykernel" },
+    { name = "jinja2" },
+    { name = "jupyter-core" },
+    { name = "jupyter-lsp" },
+    { name = "jupyter-server" },
+    { name = "jupyterlab-server" },
+    { name = "notebook-shim" },
+    { name = "packaging" },
+    { name = "setuptools" },
+    { name = "tornado" },
+    { name = "traitlets" },
+]
+sdist = { url = "https://files.pythonhosted.org/packages/ac/d5/730628e03fff2e8a8e8ccdaedde1489ab1309f9a4fa2536248884e30b7c7/jupyterlab-4.5.6.tar.gz", hash = "sha256:642fe2cfe7f0f5922a8a558ba7a0d246c7bc133b708dfe43f7b3a826d163cf42", size = 23970670, upload-time = "2026-03-11T14:17:04.531Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/e1/1b/dad6fdcc658ed7af26fdf3841e7394072c9549a8b896c381ab49dd11e2d9/jupyterlab-4.5.6-py3-none-any.whl", hash = "sha256:d6b3dac883aa4d9993348e0f8e95b24624f75099aed64eab6a4351a9cdd1e580", size = 12447124, upload-time = "2026-03-11T14:17:00.229Z" },
+]
+
+[[package]]
+name = "jupyterlab-pygments"
+version = "0.3.0"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/90/51/9187be60d989df97f5f0aba133fa54e7300f17616e065d1ada7d7646b6d6/jupyterlab_pygments-0.3.0.tar.gz", hash = "sha256:721aca4d9029252b11cfa9d185e5b5af4d54772bb8072f9b7036f4170054d35d", size = 512900, upload-time = "2023-11-23T09:26:37.44Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/b1/dd/ead9d8ea85bf202d90cc513b533f9c363121c7792674f78e0d8a854b63b4/jupyterlab_pygments-0.3.0-py3-none-any.whl", hash = "sha256:841a89020971da1d8693f1a99997aefc5dc424bb1b251fd6322462a1b8842780", size = 15884, upload-time = "2023-11-23T09:26:34.325Z" },
+]
+
+[[package]]
+name = "jupyterlab-server"
+version = "2.28.0"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
+    { name = "babel" },
+    { name = "jinja2" },
+    { name = "json5" },
+    { name = "jsonschema" },
+    { name = "jupyter-server" },
+    { name = "packaging" },
+    { name = "requests" },
+]
+sdist = { url = "https://files.pythonhosted.org/packages/d6/2c/90153f189e421e93c4bb4f9e3f59802a1f01abd2ac5cf40b152d7f735232/jupyterlab_server-2.28.0.tar.gz", hash = "sha256:35baa81898b15f93573e2deca50d11ac0ae407ebb688299d3a5213265033712c", size = 76996, upload-time = "2025-10-22T13:59:18.37Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/e0/07/a000fe835f76b7e1143242ab1122e6362ef1c03f23f83a045c38859c2ae0/jupyterlab_server-2.28.0-py3-none-any.whl", hash = "sha256:e4355b148fdcf34d312bbbc80f22467d6d20460e8b8736bf235577dd18506968", size = 59830, upload-time = "2025-10-22T13:59:16.767Z" },
+]
+
+[[package]]
+name = "jupyterlab-widgets"
+version = "3.0.16"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/26/2d/ef58fed122b268c69c0aa099da20bc67657cdfb2e222688d5731bd5b971d/jupyterlab_widgets-3.0.16.tar.gz", hash = "sha256:423da05071d55cf27a9e602216d35a3a65a3e41cdf9c5d3b643b814ce38c19e0", size = 897423, upload-time = "2025-11-01T21:11:29.724Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/ab/b5/36c712098e6191d1b4e349304ef73a8d06aed77e56ceaac8c0a306c7bda1/jupyterlab_widgets-3.0.16-py3-none-any.whl", hash = "sha256:45fa36d9c6422cf2559198e4db481aa243c7a32d9926b500781c830c80f7ecf8", size = 914926, upload-time = "2025-11-01T21:11:28.008Z" },
+]
+
 [[package]]
 name = "keyring"
 version = "25.7.0"
@@ -1458,6 +1796,15 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/80/be/3578e8afd18c88cdf9cb4cffde75a96d2be38c5a903f1ed0ceec061bd09e/kiwisolver-1.4.9-cp314-cp314t-win_arm64.whl", hash = "sha256:4a48a2ce79d65d363597ef7b567ce3d14d68783d2b2263d98db3d9477805ba32", size = 70260, upload-time = "2025-08-10T21:27:36.606Z" },
 ]
 
+[[package]]
+name = "lark"
+version = "1.3.1"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/da/34/28fff3ab31ccff1fd4f6c7c7b0ceb2b6968d8ea4950663eadcb5720591a0/lark-1.3.1.tar.gz", hash = "sha256:b426a7a6d6d53189d318f2b6236ab5d6429eaf09259f1ca33eb716eed10d2905", size = 382732, upload-time = "2025-10-27T18:25:56.653Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/82/3d/14ce75ef66813643812f3093ab17e46d3a206942ce7376d31ec2d36229e7/lark-1.3.1-py3-none-any.whl", hash = "sha256:c629b661023a014c37da873b4ff58a817398d12635d3bbb2c5a03be7fe5d1e12", size = 113151, upload-time = "2025-10-27T18:25:54.882Z" },
+]
+
 [[package]]
 name = "libroadrunner"
 version = "2.9.0"
@@ -1741,6 +2088,15 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/2c/19/04f9b178c2d8a15b076c8b5140708fa6ffc5601fb6f1e975537072df5b2a/mergedeep-1.3.4-py3-none-any.whl", hash = "sha256:70775750742b25c0d8f36c55aed03d24c3384d17c951b3175d898bd778ef0307", size = 6354, upload-time = "2021-02-05T18:55:29.583Z" },
 ]
 
+[[package]]
+name = "mistune"
+version = "3.2.0"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/9d/55/d01f0c4b45ade6536c51170b9043db8b2ec6ddf4a35c7ea3f5f559ac935b/mistune-3.2.0.tar.gz", hash = "sha256:708487c8a8cdd99c9d90eb3ed4c3ed961246ff78ac82f03418f5183ab70e398a", size = 95467, upload-time = "2025-12-23T11:36:34.994Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/9b/f7/4a5e785ec9fbd65146a27b6b70b6cdc161a66f2024e4b04ac06a67f5578b/mistune-3.2.0-py3-none-any.whl", hash = "sha256:febdc629a3c78616b94393c6580551e0e34cc289987ec6c35ed3f4be42d0eee1", size = 53598, upload-time = "2025-12-23T11:36:33.211Z" },
+]
+
 [[package]]
 name = "mkdocs"
 version = "1.6.1"
@@ -1940,6 +2296,46 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/ef/82/7a9d0550484a62c6da82858ee9419f3dd1ccc9aa1c26a1e43da3ecd20b0d/natsort-8.4.0-py3-none-any.whl", hash = "sha256:4732914fb471f56b5cce04d7bae6f164a592c7712e1c85f9ef585e197299521c", size = 38268, upload-time = "2023-06-20T04:17:17.522Z" },
 ]
 
+[[package]]
+name = "nbclient"
+version = "0.10.4"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
+    { name = "jupyter-client" },
+    { name = "jupyter-core" },
+    { name = "nbformat" },
+    { name = "traitlets" },
+]
+sdist = { url = "https://files.pythonhosted.org/packages/56/91/1c1d5a4b9a9ebba2b4e32b8c852c2975c872aec1fe42ab5e516b2cecd193/nbclient-0.10.4.tar.gz", hash = "sha256:1e54091b16e6da39e297b0ece3e10f6f29f4ac4e8ee515d29f8a7099bd6553c9", size = 62554, upload-time = "2025-12-23T07:45:46.369Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/83/a0/5b0c2f11142ed1dddec842457d3f65eaf71a0080894eb6f018755b319c3a/nbclient-0.10.4-py3-none-any.whl", hash = "sha256:9162df5a7373d70d606527300a95a975a47c137776cd942e52d9c7e29ff83440", size = 25465, upload-time = "2025-12-23T07:45:44.51Z" },
+]
+
+[[package]]
+name = "nbconvert"
+version = "7.17.0"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
+    { name = "beautifulsoup4" },
+    { name = "bleach", extra = ["css"] },
+    { name = "defusedxml" },
+    { name = "jinja2" },
+    { name = "jupyter-core" },
+    { name = "jupyterlab-pygments" },
+    { name = "markupsafe" },
+    { name = "mistune" },
+    { name = "nbclient" },
+    { name = "nbformat" },
+    { name = "packaging" },
+    { name = "pandocfilters" },
+    { name = "pygments" },
+    { name = "traitlets" },
+]
+sdist = { url = "https://files.pythonhosted.org/packages/38/47/81f886b699450d0569f7bc551df2b1673d18df7ff25cc0c21ca36ed8a5ff/nbconvert-7.17.0.tar.gz", hash = "sha256:1b2696f1b5be12309f6c7d707c24af604b87dfaf6d950794c7b07acab96dda78", size = 862855, upload-time = "2026-01-29T16:37:48.478Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/0d/4b/8d5f796a792f8a25f6925a96032f098789f448571eb92011df1ae59e8ea8/nbconvert-7.17.0-py3-none-any.whl", hash = "sha256:4f99a63b337b9a23504347afdab24a11faa7d86b405e5c8f9881cd313336d518", size = 261510, upload-time = "2026-01-29T16:37:46.322Z" },
+]
+
 [[package]]
 name = "nbformat"
 version = "5.10.4"
@@ -2015,6 +2411,34 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/88/b2/d0896bdcdc8d28a7fc5717c305f1a861c26e18c05047949fb371034d98bd/nodeenv-1.10.0-py2.py3-none-any.whl", hash = "sha256:5bb13e3eed2923615535339b3c620e76779af4cb4c6a90deccc9e36b274d3827", size = 23438, upload-time = "2025-12-20T14:08:52.782Z" },
 ]
 
+[[package]]
+name = "notebook"
+version = "7.5.5"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
+    { name = "jupyter-server" },
+    { name = "jupyterlab" },
+    { name = "jupyterlab-server" },
+    { name = "notebook-shim" },
+    { name = "tornado" },
+]
+sdist = { url = "https://files.pythonhosted.org/packages/1f/6d/41052c48d6f6349ca0a7c4d1f6a78464de135e6d18f5829ba2510e62184c/notebook-7.5.5.tar.gz", hash = "sha256:dc0bfab0f2372c8278c457423d3256c34154ac2cc76bf20e9925260c461013c3", size = 14169167, upload-time = "2026-03-11T16:32:51.922Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/f8/aa/cbd1deb9f07446241e88f8d5fecccd95b249bca0b4e5482214a4d1714c49/notebook-7.5.5-py3-none-any.whl", hash = "sha256:a7c14dbeefa6592e87f72290ca982e0c10f5bbf3786be2a600fda9da2764a2b8", size = 14578929, upload-time = "2026-03-11T16:32:48.021Z" },
+]
+
+[[package]]
+name = "notebook-shim"
+version = "0.2.4"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
+    { name = "jupyter-server" },
+]
+sdist = { url = "https://files.pythonhosted.org/packages/54/d2/92fa3243712b9a3e8bafaf60aac366da1cada3639ca767ff4b5b3654ec28/notebook_shim-0.2.4.tar.gz", hash = "sha256:b4b2cfa1b65d98307ca24361f5b30fe785b53c3fd07b7a47e89acb5e6ac638cb", size = 13167, upload-time = "2024-02-14T23:35:18.353Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/f9/33/bd5b9137445ea4b680023eb0469b2bb969d61303dedb2aac6560ff3d14a1/notebook_shim-0.2.4-py3-none-any.whl", hash = "sha256:411a5be4e9dc882a074ccbcae671eda64cceb068767e9a3419096986560e1cef", size = 13307, upload-time = "2024-02-14T23:35:16.286Z" },
+]
+
 [[package]]
 name = "numpy"
 version = "2.4.1"
@@ -2195,6 +2619,15 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/70/44/5191d2e4026f86a2a109053e194d3ba7a31a2d10a9c2348368c63ed4e85a/pandas-2.3.3-cp314-cp314t-musllinux_1_2_x86_64.whl", hash = "sha256:3869faf4bd07b3b66a9f462417d0ca3a9df29a9f6abd5d0d0dbab15dac7abe87", size = 13202175, upload-time = "2025-09-29T23:31:59.173Z" },
 ]
 
+[[package]]
+name = "pandocfilters"
+version = "1.5.1"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/70/6f/3dd4940bbe001c06a65f88e36bad298bc7a0de5036115639926b0c5c0458/pandocfilters-1.5.1.tar.gz", hash = "sha256:002b4a555ee4ebc03f8b66307e287fa492e4a77b4ea14d3f934328297bb4939e", size = 8454, upload-time = "2024-01-18T20:08:13.726Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/ef/af/4fbc8cab944db5d21b7e2a5b8e9211a03a79852b1157e2c102fcc61ac440/pandocfilters-1.5.1-py2.py3-none-any.whl", hash = "sha256:93be382804a9cdb0a7267585f157e5d1731bbe5545a85b268d6f5fe6232de2bc", size = 8663, upload-time = "2024-01-18T20:08:11.28Z" },
+]
+
 [[package]]
 name = "parsimonious"
 version = "0.11.0"
@@ -2227,27 +2660,40 @@ wheels = [
 
 [[package]]
 name = "pbest"
-version = "0.2.8"
+version = "0.4.0"
 source = { registry = "https://pypi.org/simple" }
 dependencies = [
     { name = "bigraph-schema" },
     { name = "compose-api-client" },
-    { name = "copasi-basico" },
     { name = "httpx" },
     { name = "jinja2" },
+    { name = "pbsim-common" },
+    { name = "process-bigraph" },
+    { name = "pydantic" },
+    { name = "spython" },
+]
+sdist = { url = "https://files.pythonhosted.org/packages/fe/12/69eec44629c0e92314243c6ec5b4ca69b294c92c1351ef2a14850abfc10f/pbest-0.4.0.tar.gz", hash = "sha256:aeb52b26341c69ef9ad2ea6e4487234210393d4d6b9fe27af016e211b7bc91bd", size = 136116, upload-time = "2026-03-27T18:05:40.094Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/16/e2/97647dc70715f974296800d0391996cbaccafb9b6aebaafb3621292cbf9c/pbest-0.4.0-py3-none-any.whl", hash = "sha256:5ff73dc0432a2d0e6518e8419645ae8e1dd38299e302a47894cfd5c0eda91757", size = 19643, upload-time = "2026-03-27T18:05:41.172Z" },
+]
+
+[[package]]
+name = "pbsim-common"
+version = "0.1.2"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
+    { name = "bigraph-schema" },
+    { name = "copasi-basico" },
     { name = "libroadrunner" },
-    { name = "matplotlib" },
     { name = "numpy" },
     { name = "pandas" },
     { name = "process-bigraph" },
-    { name = "pydantic" },
     { name = "python-copasi" },
-    { name = "spython" },
     { name = "tellurium" },
 ]
-sdist = { url = "https://files.pythonhosted.org/packages/5a/5d/a800018b92d05c6c136887d2ead39b9e89de6b0375ab560534e702756e1d/pbest-0.2.8.tar.gz", hash = "sha256:e6ee6ca1668a11c8659bc18cfb49ea23cb3b4906f06fb29acfcddec67bbf4983", size = 180621, upload-time = "2026-02-18T17:03:14.951Z" }
+sdist = { url = "https://files.pythonhosted.org/packages/d3/72/f7214c3350105b5085402edd22d3f21b90e6469b165c25da5d7f2e90cfcd/pbsim_common-0.1.2.tar.gz", hash = "sha256:b498cd352c039d970b20127ff24345aa39491f6d70d708e02cc5e5bfe140dc50", size = 180060, upload-time = "2026-02-27T19:08:04.011Z" }
 wheels = [
-    { url = "https://files.pythonhosted.org/packages/e5/22/b5247ece330f74a63a777c6dfe40ced3851ebbb61f12c770847136554576/pbest-0.2.8-py3-none-any.whl", hash = "sha256:3a9adbf8b76ee43241d684df8e04fab2f9cbff70b5a23a0f222a3b37d5150075", size = 30117, upload-time = "2026-02-18T17:03:13.884Z" },
+    { url = "https://files.pythonhosted.org/packages/ac/46/4cc68db4658f8c1697d8993cca92c1f2c6c90a50d0d4d4d08fef4134a67d/pbsim_common-0.1.2-py3-none-any.whl", hash = "sha256:53f721ba7df82eca4227597a47fce6091a1dc62e8210c9eed5870fe4816c8030", size = 10139, upload-time = "2026-02-27T19:08:05.086Z" },
 ]
 
 [[package]]
@@ -2429,19 +2875,32 @@ wheels = [
 
 [[package]]
 name = "process-bigraph"
-version = "0.0.51"
+version = "1.0.6"
 source = { registry = "https://pypi.org/simple" }
 dependencies = [
     { name = "bigraph-schema" },
-    { name = "docker" },
     { name = "ipdb" },
+    { name = "ipykernel" },
+    { name = "jupyter" },
     { name = "matplotlib" },
+    { name = "notebook" },
+    { name = "pandas" },
     { name = "pint" },
-    { name = "pytest" },
+    { name = "scipy" },
+    { name = "sympy" },
 ]
-sdist = { url = "https://files.pythonhosted.org/packages/75/9c/66c7efd5fcda94f559cb600b0ed80c84253244796429c5018a8260d5dfc3/process_bigraph-0.0.51.tar.gz", hash = "sha256:2044dc418d58624030b4bb3b81d4a7b4a22178b09d61f00ca79f8b3333b7af76", size = 46495, upload-time = "2025-11-18T09:12:21.532Z" }
+sdist = { url = "https://files.pythonhosted.org/packages/79/cd/6200d40105e161898e69ad470bb8a26c5199f5269dc58add9cce7cda62a4/process_bigraph-1.0.6.tar.gz", hash = "sha256:52a322a2ac68c3c2501394bccd46c60e5bce4d141c73e803a8740f22671d8501", size = 42288, upload-time = "2026-03-04T20:45:26.236Z" }
 wheels = [
-    { url = "https://files.pythonhosted.org/packages/28/f8/0dee183e0a0ee0d61b274ce2ed53cd700a69be6c47d65621384440c3c6c8/process_bigraph-0.0.51-py3-none-any.whl", hash = "sha256:a2e36cb5a7c4e4f3cec22ede28ed8c7bdb89a5a2c49542d676c014a05c887098", size = 52726, upload-time = "2025-11-18T09:12:20.405Z" },
+    { url = "https://files.pythonhosted.org/packages/af/cf/09768d89f7c756b54c8c00332ae5fb1c2d8b841a3ddd8121cf910cf73287/process_bigraph-1.0.6-py3-none-any.whl", hash = "sha256:4f17d9eb9c49d44374e0e29da8b858eee8de1f785358943f9decf3b58c7ce28d", size = 46160, upload-time = "2026-03-04T20:45:25.136Z" },
+]
+
+[[package]]
+name = "prometheus-client"
+version = "0.24.1"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/f0/58/a794d23feb6b00fc0c72787d7e87d872a6730dd9ed7c7b3e954637d8f280/prometheus_client-0.24.1.tar.gz", hash = "sha256:7e0ced7fbbd40f7b84962d5d2ab6f17ef88a72504dcf7c0b40737b43b2a461f9", size = 85616, upload-time = "2026-01-14T15:26:26.965Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/74/c3/24a2f845e3917201628ecaba4f18bab4d18a337834c1df2a159ee9d22a42/prometheus_client-0.24.1-py3-none-any.whl", hash = "sha256:150db128af71a5c2482b36e588fc8a6b95e498750da4b17065947c16070f4055", size = 64057, upload-time = "2026-01-14T15:26:24.42Z" },
 ]
 
 [[package]]
@@ -2838,6 +3297,15 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/14/1b/a298b06749107c305e1fe0f814c6c74aea7b2f1e10989cb30f544a1b3253/python_dotenv-1.2.1-py3-none-any.whl", hash = "sha256:b81ee9561e9ca4004139c6cbba3a238c32b03e4894671e181b671e8cb8425d61", size = 21230, upload-time = "2025-10-26T15:12:09.109Z" },
 ]
 
+[[package]]
+name = "python-json-logger"
+version = "4.0.0"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/29/bf/eca6a3d43db1dae7070f70e160ab20b807627ba953663ba07928cdd3dc58/python_json_logger-4.0.0.tar.gz", hash = "sha256:f58e68eb46e1faed27e0f574a55a0455eecd7b8a5b88b85a784519ba3cff047f", size = 17683, upload-time = "2025-10-06T04:15:18.984Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/51/e5/fecf13f06e5e5f67e8837d777d1bc43fac0ed2b77a676804df5c34744727/python_json_logger-4.0.0-py3-none-any.whl", hash = "sha256:af09c9daf6a813aa4cc7180395f50f2a9e5fa056034c9953aec92e381c5ba1e2", size = 15548, upload-time = "2025-10-06T04:15:17.553Z" },
+]
+
 [[package]]
 name = "python-libcombine"
 version = "0.2.20"
@@ -2960,6 +3428,22 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/de/3d/8161f7711c017e01ac9f008dfddd9410dff3674334c233bde66e7ba65bbf/pywin32_ctypes-0.2.3-py3-none-any.whl", hash = "sha256:8a1513379d709975552d202d942d9837758905c8d01eb82b8bcc30918929e7b8", size = 30756, upload-time = "2024-08-14T10:15:33.187Z" },
 ]
 
+[[package]]
+name = "pywinpty"
+version = "3.0.3"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/f7/54/37c7370ba91f579235049dc26cd2c5e657d2a943e01820844ffc81f32176/pywinpty-3.0.3.tar.gz", hash = "sha256:523441dc34d231fb361b4b00f8c99d3f16de02f5005fd544a0183112bcc22412", size = 31309, upload-time = "2026-02-04T21:51:09.524Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/e5/cb/58d6ed3fd429c96a90ef01ac9a617af10a6d41469219c25e7dc162abbb71/pywinpty-3.0.3-cp313-cp313-win_amd64.whl", hash = "sha256:9c91dbb026050c77bdcef964e63a4f10f01a639113c4d3658332614544c467ab", size = 2112686, upload-time = "2026-02-04T21:52:03.035Z" },
+    { url = "https://files.pythonhosted.org/packages/fd/50/724ed5c38c504d4e58a88a072776a1e880d970789deaeb2b9f7bd9a5141a/pywinpty-3.0.3-cp313-cp313-win_arm64.whl", hash = "sha256:fe1f7911805127c94cf51f89ab14096c6f91ffdcacf993d2da6082b2142a2523", size = 234591, upload-time = "2026-02-04T21:52:29.821Z" },
+    { url = "https://files.pythonhosted.org/packages/f7/ad/90a110538696b12b39fd8758a06d70ded899308198ad2305ac68e361126e/pywinpty-3.0.3-cp313-cp313t-win_amd64.whl", hash = "sha256:3f07a6cf1c1d470d284e614733c3d0f726d2c85e78508ea10a403140c3c0c18a", size = 2112360, upload-time = "2026-02-04T21:55:33.397Z" },
+    { url = "https://files.pythonhosted.org/packages/44/0f/7ffa221757a220402bc79fda44044c3f2cc57338d878ab7d622add6f4581/pywinpty-3.0.3-cp313-cp313t-win_arm64.whl", hash = "sha256:15c7c0b6f8e9d87aabbaff76468dabf6e6121332c40fc1d83548d02a9d6a3759", size = 233107, upload-time = "2026-02-04T21:51:45.455Z" },
+    { url = "https://files.pythonhosted.org/packages/28/88/2ff917caff61e55f38bcdb27de06ee30597881b2cae44fbba7627be015c4/pywinpty-3.0.3-cp314-cp314-win_amd64.whl", hash = "sha256:d4b6b7b0fe0cdcd02e956bd57cfe9f4e5a06514eecf3b5ae174da4f951b58be9", size = 2113282, upload-time = "2026-02-04T21:52:08.188Z" },
+    { url = "https://files.pythonhosted.org/packages/63/32/40a775343ace542cc43ece3f1d1fce454021521ecac41c4c4573081c2336/pywinpty-3.0.3-cp314-cp314-win_arm64.whl", hash = "sha256:34789d685fc0d547ce0c8a65e5a70e56f77d732fa6e03c8f74fefb8cbb252019", size = 234207, upload-time = "2026-02-04T21:51:58.687Z" },
+    { url = "https://files.pythonhosted.org/packages/8d/54/5d5e52f4cb75028104ca6faf36c10f9692389b1986d34471663b4ebebd6d/pywinpty-3.0.3-cp314-cp314t-win_amd64.whl", hash = "sha256:0c37e224a47a971d1a6e08649a1714dac4f63c11920780977829ed5c8cadead1", size = 2112910, upload-time = "2026-02-04T21:52:30.976Z" },
+    { url = "https://files.pythonhosted.org/packages/0a/44/dcd184824e21d4620b06c7db9fbb15c3ad0a0f1fa2e6de79969fb82647ec/pywinpty-3.0.3-cp314-cp314t-win_arm64.whl", hash = "sha256:c4e9c3dff7d86ba81937438d5819f19f385a39d8f592d4e8af67148ceb4f6ab5", size = 233425, upload-time = "2026-02-04T21:51:56.754Z" },
+]
+
 [[package]]
 name = "pyyaml"
 version = "6.0.3"
@@ -3201,6 +3685,18 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/bd/60/50fbb6ffb35f733654466f1a90d162bcbea358adc3b0871339254fbc37b2/requirements_parser-0.13.0-py3-none-any.whl", hash = "sha256:2b3173faecf19ec5501971b7222d38f04cb45bb9d87d0ad629ca71e2e62ded14", size = 14782, upload-time = "2025-05-21T13:42:04.007Z" },
 ]
 
+[[package]]
+name = "rfc3339-validator"
+version = "0.1.4"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
+    { name = "six" },
+]
+sdist = { url = "https://files.pythonhosted.org/packages/28/ea/a9387748e2d111c3c2b275ba970b735e04e15cdb1eb30693b6b5708c4dbd/rfc3339_validator-0.1.4.tar.gz", hash = "sha256:138a2abdf93304ad60530167e51d2dfb9549521a836871b88d7f4695d0022f6b", size = 5513, upload-time = "2021-05-12T16:37:54.178Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/7b/44/4e421b96b67b2daff264473f7465db72fbdf36a07e05494f50300cc7b0c6/rfc3339_validator-0.1.4-py2.py3-none-any.whl", hash = "sha256:24f6ec1eda14ef823da9e36ec7113124b39c04d50a4d3d3a3c2859577e7791fa", size = 3490, upload-time = "2021-05-12T16:37:52.536Z" },
+]
+
 [[package]]
 name = "rfc3986"
 version = "2.0.0"
@@ -3210,6 +3706,27 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/ff/9a/9afaade874b2fa6c752c36f1548f718b5b83af81ed9b76628329dab81c1b/rfc3986-2.0.0-py2.py3-none-any.whl", hash = "sha256:50b1502b60e289cb37883f3dfd34532b8873c7de9f49bb546641ce9cbd256ebd", size = 31326, upload-time = "2022-01-10T00:52:29.594Z" },
 ]
 
+[[package]]
+name = "rfc3986-validator"
+version = "0.1.1"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/da/88/f270de456dd7d11dcc808abfa291ecdd3f45ff44e3b549ffa01b126464d0/rfc3986_validator-0.1.1.tar.gz", hash = "sha256:3d44bde7921b3b9ec3ae4e3adca370438eccebc676456449b145d533b240d055", size = 6760, upload-time = "2019-10-28T16:00:19.144Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/9e/51/17023c0f8f1869d8806b979a2bffa3f861f26a3f1a66b094288323fba52f/rfc3986_validator-0.1.1-py2.py3-none-any.whl", hash = "sha256:2f235c432ef459970b4306369336b9d5dbdda31b510ca1e327636e01f528bfa9", size = 4242, upload-time = "2019-10-28T16:00:13.976Z" },
+]
+
+[[package]]
+name = "rfc3987-syntax"
+version = "1.1.0"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
+    { name = "lark" },
+]
+sdist = { url = "https://files.pythonhosted.org/packages/2c/06/37c1a5557acf449e8e406a830a05bf885ac47d33270aec454ef78675008d/rfc3987_syntax-1.1.0.tar.gz", hash = "sha256:717a62cbf33cffdd16dfa3a497d81ce48a660ea691b1ddd7be710c22f00b4a0d", size = 14239, upload-time = "2025-07-18T01:05:05.015Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/7e/71/44ce230e1b7fadd372515a97e32a83011f906ddded8d03e3c6aafbdedbb7/rfc3987_syntax-1.1.0-py3-none-any.whl", hash = "sha256:6c3d97604e4c5ce9f714898e05401a0445a641cfa276432b0a648c80856f6a3f", size = 8046, upload-time = "2025-07-18T01:05:03.843Z" },
+]
+
 [[package]]
 name = "rich"
 version = "14.2.0"
@@ -3467,6 +3984,15 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/b7/46/f5af3402b579fd5e11573ce652019a67074317e18c1935cc0b4ba9b35552/secretstorage-3.5.0-py3-none-any.whl", hash = "sha256:0ce65888c0725fcb2c5bc0fdb8e5438eece02c523557ea40ce0703c266248137", size = 15554, upload-time = "2025-11-23T19:02:51.545Z" },
 ]
 
+[[package]]
+name = "send2trash"
+version = "2.1.0"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/c5/f0/184b4b5f8d00f2a92cf96eec8967a3d550b52cf94362dad1100df9e48d57/send2trash-2.1.0.tar.gz", hash = "sha256:1c72b39f09457db3c05ce1d19158c2cbef4c32b8bedd02c155e49282b7ea7459", size = 17255, upload-time = "2026-01-14T06:27:36.056Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/1c/78/504fdd027da3b84ff1aecd9f6957e65f35134534ccc6da8628eb71e76d3f/send2trash-2.1.0-py3-none-any.whl", hash = "sha256:0da2f112e6d6bb22de6aa6daa7e144831a4febf2a87261451c4ad849fe9a873c", size = 17610, upload-time = "2026-01-14T06:27:35.218Z" },
+]
+
 [[package]]
 name = "setuptools"
 version = "80.9.0"
@@ -3525,6 +4051,15 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/c8/78/3565d011c61f5a43488987ee32b6f3f656e7f107ac2782dd57bdd7d91d9a/snowballstemmer-3.0.1-py3-none-any.whl", hash = "sha256:6cd7b3897da8d6c9ffb968a6781fa6532dce9c3618a4b127d920dab764a19064", size = 103274, upload-time = "2025-05-09T16:34:50.371Z" },
 ]
 
+[[package]]
+name = "soupsieve"
+version = "2.8.3"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/7b/ae/2d9c981590ed9999a0d91755b47fc74f74de286b0f5cee14c9269041e6c4/soupsieve-2.8.3.tar.gz", hash = "sha256:3267f1eeea4251fb42728b6dfb746edc9acaffc4a45b27e19450b676586e8349", size = 118627, upload-time = "2026-01-20T04:27:02.457Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/46/2c/1462b1d0a634697ae9e55b3cecdcb64788e8b7d63f54d923fcd0bb140aed/soupsieve-2.8.3-py3-none-any.whl", hash = "sha256:ed64f2ba4eebeab06cc4962affce381647455978ffc1e36bb79a545b91f45a95", size = 37016, upload-time = "2026-01-20T04:27:01.012Z" },
+]
+
 [[package]]
 name = "sphinx"
 version = "8.2.3"
@@ -3714,6 +4249,18 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/be/72/2db2f49247d0a18b4f1bb9a5a39a0162869acf235f3a96418363947b3d46/starlette-0.48.0-py3-none-any.whl", hash = "sha256:0764ca97b097582558ecb498132ed0c7d942f233f365b86ba37770e026510659", size = 73736, upload-time = "2025-09-13T08:41:03.869Z" },
 ]
 
+[[package]]
+name = "sympy"
+version = "1.14.0"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
+    { name = "mpmath" },
+]
+sdist = { url = "https://files.pythonhosted.org/packages/83/d3/803453b36afefb7c2bb238361cd4ae6125a569b4db67cd9e79846ba2d68c/sympy-1.14.0.tar.gz", hash = "sha256:d3d3fe8df1e5a0b42f0e7bdf50541697dbe7d23746e894990c030e2b05e72517", size = 7793921, upload-time = "2025-04-27T18:05:01.611Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/a2/09/77d55d46fd61b4a135c444fc97158ef34a095e5681d0a6c10b75bf356191/sympy-1.14.0-py3-none-any.whl", hash = "sha256:e091cc3e99d2141a0ba2847328f5479b05d94a6635cb96148ccb3f34671bd8f5", size = 6299353, upload-time = "2025-04-27T18:04:59.103Z" },
+]
+
 [[package]]
 name = "tellurium"
 version = "2.2.11.2"
@@ -3754,6 +4301,20 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/33/d1/8bb87d21e9aeb323cc03034f5eaf2c8f69841e40e4853c2627edf8111ed3/termcolor-3.3.0-py3-none-any.whl", hash = "sha256:cf642efadaf0a8ebbbf4bc7a31cec2f9b5f21a9f726f4ccbb08192c9c26f43a5", size = 7734, upload-time = "2025-12-29T12:55:20.718Z" },
 ]
 
+[[package]]
+name = "terminado"
+version = "0.18.1"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
+    { name = "ptyprocess", marker = "os_name != 'nt'" },
+    { name = "pywinpty", marker = "os_name == 'nt'" },
+    { name = "tornado" },
+]
+sdist = { url = "https://files.pythonhosted.org/packages/8a/11/965c6fd8e5cc254f1fe142d547387da17a8ebfd75a3455f637c663fb38a0/terminado-0.18.1.tar.gz", hash = "sha256:de09f2c4b85de4765f7714688fff57d3e75bad1f909b589fde880460c753fd2e", size = 32701, upload-time = "2024-03-12T14:34:39.026Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/6a/9e/2064975477fdc887e47ad42157e214526dcad8f317a948dee17e1659a62f/terminado-0.18.1-py3-none-any.whl", hash = "sha256:a4468e1b37bb318f8a86514f65814e1afc977cf29b3992a4500d9dd305dcceb0", size = 14154, upload-time = "2024-03-12T14:34:36.569Z" },
+]
+
 [[package]]
 name = "testcontainers"
 version = "4.14.0"
@@ -3775,6 +4336,18 @@ nats = [
     { name = "nats-py" },
 ]
 
+[[package]]
+name = "tinycss2"
+version = "1.4.0"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
+    { name = "webencodings" },
+]
+sdist = { url = "https://files.pythonhosted.org/packages/7a/fd/7a5ee21fd08ff70d3d33a5781c255cbe779659bd03278feb98b19ee550f4/tinycss2-1.4.0.tar.gz", hash = "sha256:10c0972f6fc0fbee87c3edb76549357415e94548c1ae10ebccdea16fb404a9b7", size = 87085, upload-time = "2024-10-24T14:58:29.895Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/e6/34/ebdc18bae6aa14fbee1a08b63c015c72b64868ff7dae68808ab500c492e2/tinycss2-1.4.0-py3-none-any.whl", hash = "sha256:3a49cf47b7675da0b15d0c6e1df8df4ebd96e9394bb905a5775adb0d884c5289", size = 26610, upload-time = "2024-10-24T14:58:28.029Z" },
+]
+
 [[package]]
 name = "tornado"
 version = "6.5.4"
@@ -3942,6 +4515,15 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/c7/b0/003792df09decd6849a5e39c28b513c06e84436a54440380862b5aeff25d/tzdata-2025.3-py2.py3-none-any.whl", hash = "sha256:06a47e5700f3081aab02b2e513160914ff0694bce9947d6b76ebd6bf57cfc5d1", size = 348521, upload-time = "2025-12-13T17:45:33.889Z" },
 ]
 
+[[package]]
+name = "uri-template"
+version = "1.3.0"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/31/c7/0336f2bd0bcbada6ccef7aaa25e443c118a704f828a0620c6fa0207c1b64/uri-template-1.3.0.tar.gz", hash = "sha256:0e00f8eb65e18c7de20d595a14336e9f337ead580c70934141624b6d1ffdacc7", size = 21678, upload-time = "2023-06-21T01:49:05.374Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/e7/00/3fca040d7cf8a32776d3d81a00c8ee7457e00f80c649f1e4a863c8321ae9/uri_template-1.3.0-py3-none-any.whl", hash = "sha256:a44a133ea12d44a0c0f06d7d42a52d71282e77e2f937d8abd5655b8d56fc1363", size = 11140, upload-time = "2023-06-21T01:49:03.467Z" },
+]
+
 [[package]]
 name = "uritools"
 version = "6.0.1"
@@ -4030,6 +4612,42 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/af/b5/123f13c975e9f27ab9c0770f514345bd406d0e8d3b7a0723af9d43f710af/wcwidth-0.2.14-py2.py3-none-any.whl", hash = "sha256:a7bb560c8aee30f9957e5f9895805edd20602f2d7f720186dfd906e82b4982e1", size = 37286, upload-time = "2025-09-22T16:29:51.641Z" },
 ]
 
+[[package]]
+name = "webcolors"
+version = "25.10.0"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/1d/7a/eb316761ec35664ea5174709a68bbd3389de60d4a1ebab8808bfc264ed67/webcolors-25.10.0.tar.gz", hash = "sha256:62abae86504f66d0f6364c2a8520de4a0c47b80c03fc3a5f1815fedbef7c19bf", size = 53491, upload-time = "2025-10-31T07:51:03.977Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/e2/cc/e097523dd85c9cf5d354f78310927f1656c422bd7b2613b2db3e3f9a0f2c/webcolors-25.10.0-py3-none-any.whl", hash = "sha256:032c727334856fc0b968f63daa252a1ac93d33db2f5267756623c210e57a4f1d", size = 14905, upload-time = "2025-10-31T07:51:01.778Z" },
+]
+
+[[package]]
+name = "webencodings"
+version = "0.5.1"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/0b/02/ae6ceac1baeda530866a85075641cec12989bd8d31af6d5ab4a3e8c92f47/webencodings-0.5.1.tar.gz", hash = "sha256:b36a1c245f2d304965eb4e0a82848379241dc04b865afcc4aab16748587e1923", size = 9721, upload-time = "2017-04-05T20:21:34.189Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/f4/24/2a3e3df732393fed8b3ebf2ec078f05546de641fe1b667ee316ec1dcf3b7/webencodings-0.5.1-py2.py3-none-any.whl", hash = "sha256:a0af1213f3c2226497a97e2b3aa01a7e4bee4f403f95be16fc9acd2947514a78", size = 11774, upload-time = "2017-04-05T20:21:32.581Z" },
+]
+
+[[package]]
+name = "websocket-client"
+version = "1.9.0"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/2c/41/aa4bf9664e4cda14c3b39865b12251e8e7d239f4cd0e3cc1b6c2ccde25c1/websocket_client-1.9.0.tar.gz", hash = "sha256:9e813624b6eb619999a97dc7958469217c3176312b3a16a4bd1bc7e08a46ec98", size = 70576, upload-time = "2025-10-07T21:16:36.495Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/34/db/b10e48aa8fff7407e67470363eac595018441cf32d5e1001567a7aeba5d2/websocket_client-1.9.0-py3-none-any.whl", hash = "sha256:af248a825037ef591efbf6ed20cc5faa03d3b47b9e5a2230a529eeee1c1fc3ef", size = 82616, upload-time = "2025-10-07T21:16:34.951Z" },
+]
+
+[[package]]
+name = "widgetsnbextension"
+version = "4.0.15"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/bd/f4/c67440c7fb409a71b7404b7aefcd7569a9c0d6bd071299bf4198ae7a5d95/widgetsnbextension-4.0.15.tar.gz", hash = "sha256:de8610639996f1567952d763a5a41af8af37f2575a41f9852a38f947eb82a3b9", size = 1097402, upload-time = "2025-11-01T21:15:55.178Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/3f/0e/fa3b193432cfc60c93b42f3be03365f5f909d2b3ea410295cf36df739e31/widgetsnbextension-4.0.15-py3-none-any.whl", hash = "sha256:8156704e4346a571d9ce73b84bee86a29906c9abfd7223b7228a28899ccf3366", size = 2196503, upload-time = "2025-11-01T21:15:53.565Z" },
+]
+
 [[package]]
 name = "wrapt"
 version = "2.0.1"