_pkgdown.yml

authors:
  Richard Chandler:
    href: https://chandlerlab.uga.edu/richard-chandler-phd/
  Ken Kellner:
    href: https://kenkellner.com

home:
  links:
  - text: Get help from the community
    href: https://groups.google.com/g/unmarked

reference:
  - title: Occupancy models
    contents:
      - occu
      - goccu
      - colext
      - occuComm
      - occuMS
      - occuMulti
      - occuPEN
      - occuFP
      - occuTTD
      - occuCOP
  - title: Abundance models
    contents:
      - occuRN
      - pcount
      - distsamp
      - multinomPois
      - gpcount
      - gmultmix
      - gdistsamp
      - gdistremoval
      - pcountOpen
      - distsampOpen
      - multmixOpen
      - nmixTTD
      - IDS
      - pcount.spHDS
  - title: Study design
    contents:
      - simulate,unmarkedFrame-method
      - powerAnalysis
  - title: Model criticism
    contents:
      - vif
      - fitted,unmarkedFit-method
      - residuals,unmarkedFit-method
      - fitList
      - crossVal,unmarkedFit-method
      - modSel
      - simulate,unmarkedFit-method
      - parboot
      - nonparboot,unmarkedFit-method
  - title: Model results
    contents:
      - predict,unmarkedFit-method
      - ranef
      - bup
      - posteriorSamples,unmarkedRanef-method
      - plotEffects
      - randomTerms
      - sigma
  - title: Organize data
    contents:
      - unmarkedFrameDS
      - unmarkedFrameOccu
      - unmarkedFrameOccuComm
      - unmarkedFrameOccuFP
      - unmarkedFrameOccuMulti
      - unmarkedFramePCount
      - unmarkedFrameMPois
      - unmarkedFrameOccuCOP
      - unmarkedFrameOccuMS
      - unmarkedFrameOccuTTD
      - unmarkedFrameOccuCOP
      - unmarkedFramePCO
      - unmarkedFrameGDR
      - unmarkedFrameGMM
      - unmarkedFrameGDS
      - unmarkedFrameGPC
      - unmarkedFrameGOccu
      - unmarkedFrameMMO
      - unmarkedFrameDSO
      - unmarkedMultFrame
  - title: Datasets
    contents:
      - birds
      - crossbill
      - cruz
      - frogs
      - gf
      - issj
      - jay
      - linetran
      - mallard
      - masspcru
      - MesoCarnivores
      - ovendata
      - pointtran
      - Switzerland
  - title: internal
    contents:
      - unmarkedFrame
      - linearComb
      - backTransform
      - SE-methods
      - SSE
      - computeMPLElambda
      - confint-methods
      - csvToUMF
      - detFuns
      - "[-methods"
      - formatDistData
      - formatMult
      - formatWideLong
      - getB-methods
      - unmarkedPowerList
      - vcov-methods
      - occuPEN_CV
      - optimizePenalty-methods
      - getFP-methods
      - getP
      - imputeMissing
      - lambda2psi
      - makePiFuns
      - piFuns
      - unmarkedPower-methods
      - shinyPower
      - unmarkedFitList-class
      - unmarked-package
      - unmarkedEstimate-class
      - unmarkedEstimateList-class
      - plot,parboot,missing-method
      - show,parboot-method
      - sight2perpdist
      - predict,unmarkedFitOccuMulti-method
      - predict,unmarkedFitOccuMS-method
      - unmarkedFit-class
      - unmarkedFrame-class
      - coef-methods
      - richness
      - unmarkedModSel-class
      - unmarkedRanef-class