diff --git a/README.md b/README.md index 8e2219c..fee5895 100644 --- a/README.md +++ b/README.md @@ -1,12 +1,12 @@ -# spAbundance +# spAbundance [![](http://cranlogs.r-pkg.org/badges/grand-total/spAbundance?color=blue)](https://CRAN.R-project.org/package=spAbundance) [![CRAN](https://www.r-pkg.org/badges/version/spAbundance)](https://CRAN.R-project.org/package=spAbundance) [![Codecov test -coverage](https://codecov.io/gh/biodiverse/spAbundance/branch/main/graph/badge.svg)](https://codecov.io/gh/biodiverse/spAbundance?branch=main) +coverage](https://codecov.io/gh/biodiverse/spAbundance/branch/main/graph/badge.svg)](https://app.codecov.io/gh/biodiverse/spAbundance?branch=main) `spAbundance` fits univariate (i.e., single-species) and multivariate (i.e., multi-species) spatial N-mixture models, hierarchical distance @@ -14,7 +14,7 @@ sampling models, and generalized linear mixed models using Markov chain Monte Carlo (MCMC). Spatial models are fit using Nearest Neighbor Gaussian Processes (NNGPs) to facilitate model fitting to large spatial datasets. `spAbundance` uses analogous syntax to its “sister package” -[spOccupancy](https://www.doserlab.com/files/spoccupancy-web/) (Doser et +[spOccupancy](https://doserlab.com/files/spoccupancy-web/) (Doser et al. 2022). Below we provide a very brief introduction to some of the package’s functionality, and illustrate just one of the model fitting functions. For more information, see the resources referenced at the @@ -250,7 +250,7 @@ hierarchical distance sampling models, N-mixture models, and generalized linear mixed models in `spAbundance`, respectively. Given the similarity in syntax to fitting occupancy models in the `spOccupancy` package, much of the documentation on the [`spOccupancy` -website](https://www.doserlab.com/files/spoccupancy-web/) will also be +website](https://doserlab.com/files/spoccupancy-web/) will also be helpful for fitting models in `spAbundance`. Please also consider joining the [`spAbundance` and `spOccupancy` users google group](https://groups.google.com/g/spocc-spabund-users) to learn from diff --git a/inst/CITATION b/inst/CITATION index e93231a..6b9d1d9 100644 --- a/inst/CITATION +++ b/inst/CITATION @@ -1,6 +1,6 @@ if (!exists("meta") || is.null(meta)) meta <- packageDescription("spAbundance") -citHeader("To cite package", sQuote(meta$Package), "in publications, please cite the Doser, Finley, Kéry, Zipkin (2024) paper. If using functions lfMsAbund, sfMsAbund, lfMsDS, or sfMsDS, please also cite the Doser, Finley, Banerjee (2023) paper that developed much of the code used for these functions.") +citHeader("To cite package", sQuote(meta$Package), "in publications, please cite the Doser, Finley, Kéry, Zipkin (2024) paper. If using functions lfMsAbund, sfMsAbund, lfMsNMix, sfMsNMix, lfMsDS, or sfMsDS, please also cite the Doser, Finley, Banerjee (2023) paper that developed much of the code used for these functions.") bibentry(bibtype = "Article", title = "{spAbundance: An R package for univariate and multivariate spatially-explicit abundance models}",