From 49a2752a89e951ed0166a227110d05df5290add9 Mon Sep 17 00:00:00 2001 From: Alexander Li Cohen Date: Wed, 18 Jan 2017 11:40:16 -0500 Subject: [PATCH 1/2] Added level of search for finding nifti files current code wouldn't dig into multiple session data, i.e., /sub-29008/ses-1/func/sub-29008_ses-1_task-rest_run-1_bold.nii.gz when asked to process all subjects. --- run.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/run.py b/run.py index 8ae453a..ef80e5c 100644 --- a/run.py +++ b/run.py @@ -111,7 +111,8 @@ def run(command, env={}): "*","*","*.nii*")) else: file_paths=glob(os.path.join(args.bids_dir,"*","*.nii*"))+\ - glob(os.path.join(args.bids_dir,"*","*","*.nii*")) + glob(os.path.join(args.bids_dir,"*","*","*.nii*"))\ + glob(os.path.join(args.bids_dir,"*","*","*","*.nii*")) sub_list = extract_bids_data(file_paths) From 0f3e170457671e9723d1b7787da86a841da685ed Mon Sep 17 00:00:00 2001 From: Alexander Li Cohen Date: Mon, 23 Jan 2017 11:14:49 -0500 Subject: [PATCH 2/2] Missing plus sign --- run.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/run.py b/run.py index ef80e5c..3937fb1 100644 --- a/run.py +++ b/run.py @@ -111,7 +111,7 @@ def run(command, env={}): "*","*","*.nii*")) else: file_paths=glob(os.path.join(args.bids_dir,"*","*.nii*"))+\ - glob(os.path.join(args.bids_dir,"*","*","*.nii*"))\ + glob(os.path.join(args.bids_dir,"*","*","*.nii*"))+\ glob(os.path.join(args.bids_dir,"*","*","*","*.nii*")) sub_list = extract_bids_data(file_paths)