From 7bc445074a09c638ebf9d49090507e92fd4eca34 Mon Sep 17 00:00:00 2001 From: Alexander Li Cohen Date: Wed, 4 Jan 2017 11:06:27 -0500 Subject: [PATCH] Updated to match QAP 1.0.8 variable names --- default_pipeline.yml | 14 +++++++++----- 1 file changed, 9 insertions(+), 5 deletions(-) diff --git a/default_pipeline.yml b/default_pipeline.yml index c7d0ce2..2816479 100644 --- a/default_pipeline.yml +++ b/default_pipeline.yml @@ -1,10 +1,14 @@ -# how many participants to run per workflow -num_subjects_per_bundle: 1 +# name for this run +pipeline_name: QAP_bids_app_default +# how many processors you wish to use in the run num_processors: 1 -memory_allocated: 2 -pipeline_name: QAP_bids_app_default +# how many participants to run per workflow +num_participants_at_once: 1 + +# the amount of memory (in GB) to allocate to each participant +memory_allocated_per_participant: 2 # which resource manager being used, if any resource_manager: None @@ -17,7 +21,7 @@ working_directory: /scratch # path to skull template # only required if you have anatomical scans -template_skull_for_anat: /qap_resources/qap_templates/MNI152_T1_2mm.nii.gz +template_head_for_anat: /qap_resources/qap_templates/MNI152_T1_2mm.nii.gz # exclude zero-value voxels from the background of the anatomical scan # this is meant for images that have been manually altered (ex. ears removed