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nogls-sub-bcolz.t43 test fails #940

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mmokrejs opened this issue Dec 29, 2019 · 0 comments
Open

nogls-sub-bcolz.t43 test fails #940

mmokrejs opened this issue Dec 29, 2019 · 0 comments

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@mmokrejs
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Hi,
I just installed gemini and ran the test suite but it fails with:

    nogls-sub-bcolz.t43...
/usr/local/share/gemini/anaconda/lib/python2.7/site-packages/bcolz/chunked_eval.py:264: UserWarning: numexpr cannot handle this expression: falling back to the 'python' virtual machine.  You can choose another virtual machine by using the `vm` parameter.
  "numexpr cannot handle this expression: falling back "
1,5c1
< chr1	1222841	1222842	C	T	SCNN1D	C/C	C/C
< chr1	1222957	1222958	C	T	SCNN1D	C/C	C/C
< chr1	1222962	1222963	C	T	SCNN1D	C/C	C/C
< chr1	1225596	1225597	G	A	SCNN1D	G/G	G/G
< chr1	1225603	1225604	A	G	SCNN1D	A/A	A/A
---
> chr1	1219381	1219382	C	G	SCNN1D	C/C	C/C
fail

The last commit is bc84fe2

@mmokrejs mmokrejs changed the title nogls-sub-bcolz.t43 failing nogls-sub-bcolz.t43 test fails Dec 29, 2019
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