showyourwork.yml

verbose: true

stamp:
  enabled: false

margin_icons:
    colors:
        cache: "0.25,0.25,0.25"
        dataset: "0.25,0.25,0.25"
        github: "0.25,0.25,0.25"
        sandbox: "0.25,0.25,0.25"
    horizontal_offset: -4

datasets:
    10.5281/zenodo.10532134:
        contents:
            traj0.out: src/data/llzo/traj0.out
            traj1.out: src/data/llzo/traj1.out
            traj2.out: src/data/llzo/traj2.out
            traj3.out: src/data/llzo/traj3.out
            traj4.out: src/data/llzo/traj4.out
            traj5.out: src/data/llzo/traj5.out

dependencies:
    src/tex/ms.tex:
        - src/tex/bib.bib
    src/scripts/glswlsols.py:
        - src/data/random_walks/numerical/glswlsols_1_128_128.npz
        - src/scripts/utils/_fig_params.py
    src/scripts/msd.py:
        - src/data/random_walks/kinisi/rw_1_128_128_s4096.npz
        - src/data/random_walks/numerical/rw_1_128_128_s4096.npz 
    src/scripts/random_walk.py:
        - src/data/random_walks/kinisi/rw_1_128_128_s4096.npz
        - src/data/random_walks/numerical/D_1_128_128.npz
    src/scripts/diffusion.py:
        - src/data/llzo/true_10_10000.npz
        {% for n in range(0, 6, 1) %}
        - src/data/llzo/diffusion_{{n}}_10_10000.npz
        {% endfor %}
        - src/scripts/utils/_fig_params.py
    src/scripts/covariances.py:
        - src/data/random_walks/numerical/rw_1_128_128_s4096.npz
        - src/data/random_walks/kinisi/rw_1_128_128_s4096.npz
        - src/scripts/utils/_fig_params.py
    src/scripts/true_cov.py:
        - src/data/random_walks/numerical/D_1_128_128.npz
        - src/data/random_walks/true_cov/rw_1_128_128_s4096.npz
        - src/scripts/utils/_fig_params.py
    src/scripts/stat_eff.py:
        - src/data/random_walks/stat_eff.npz
        - src/scripts/utils/_fig_params.py
    src/scripts/glswlsols_llzo.py:
        - src/data/llzo/glswlsols_10_10000.npz
        - src/data/llzo/true_10_10000.npz
    src/scripts/pyblock.py:
        - src/data/random_walks/numerical/D_1_128_128.npz
        - src/data/random_walks/kinisi/rw_1_128_128_s4096.npz
        - src/data/random_walks/pyblock/rw_1_128_128_s4096.npz