Patient-Timeline

Setup environnement variables

First of all, environnement variables need to be set. Start by creating a .env file located at the root of the project. Copy in it the content of .env.template file.

Set each of the constant values.

Setup Python virtual env

From the /python project folder.

python3 -m venv ./.venv

source ./.venv/bin/activate

pip install -r requirements.txt

Start MinIO server

From the project root folder.

docker-compose up

NB: The MinIO server will have the credentials set in the .env file (ie MINIO_ACCESS_KEY & MINIO_SECRET_KEY)

Launch script to setup fake documents

python3 python/main.py

Setup DocumentReference resource

All there is to do now is to set a new mapping DocumentReference (for instance in River).

• Set its source table to timeline_documents.
• Plug the content[0].attachment.url attirbute to timeline_documents.doc_url
• Plug the subject.identifier.value attribute to timeline_documents.patient_id

You can check on the preview if everything is alright.

Once it is, just launch a batch for this DocumentReference resource.

Install App dependencies

yarn install

Start App

yarn start