main.yml

name: fhirstore

on: [push]

jobs:
  build:
    name: Lint and test
    runs-on: ubuntu-18.04
    strategy:
      max-parallel: 2
      matrix:
        python-version: [3.6, 3.7]

    steps:
      - uses: actions/checkout@v1
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v1
        with:
          python-version: ${{ matrix.python-version }}
      - name: Install dependencies
        run: |
          # Mongo client
          wget -qO - https://www.mongodb.org/static/pgp/server-4.2.asc | sudo apt-key add -
          echo "deb [ arch=amd64 ] https://repo.mongodb.org/apt/ubuntu bionic/mongodb-org/4.2 multiverse" | sudo tee /etc/apt/sources.list.d/mongodb-org-4.2.list
          sudo apt-get update
          sudo apt-get install -y mongodb-org-shell jq
          # Python dependencies
          python -m pip install --upgrade pip
          pip install -r requirements.txt
          pip install -r requirements-dev.txt
      - name: Lint with flake8
        run: |
          # stop the build if there are Python syntax errors or undefined names
          flake8 fhirstore --count --select=E9,F63,F7,F82 --show-source --statistics
          # exit-zero treats all errors as warnings.
          flake8 fhirstore --count --exit-zero --max-complexity=10 --max-line-length=100 --statistics
      - name: Test with pytest
        run: |
          docker-compose up -d
          ./scripts/wait_for_db.sh
          env $(cat .env) ./scripts/initiate_rep_set.sh 
          sleep 5
          env $(cat .env) python -m pytest -svvv test/

  publish:
    name: Build and publish
    runs-on: ubuntu-18.04
    needs: build
    if: github.ref == 'refs/heads/master'
    steps:
      - uses: actions/checkout@v1
      - name: Set up Python
        uses: actions/setup-python@v1
        with:
          python-version: "3.7"
      - name: Install dependencies
        run: |
          python -m pip install --upgrade pip
          pip install -r requirements-dev.txt
      - name: Build and publish
        env:
          TWINE_USERNAME: ${{ secrets.PYPI_USERNAME }}
          TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }}
        run: |
          python setup.py sdist bdist_wheel
          twine upload dist/*