missing .cif files.

[yuzimu1]

Hi, thanks for your excellent work on OpenFold!

I am currently trying to run inference using template-free finetuned weights (specifically: finetuning_no_templ_ptm_1.pt). I also want to use precomputed alignments.

Here is the command I'm using:

python3 run_pretrained_openfold.py \
  /home/rotation14/export/openfold/examples/monomer/fasta_dir \
  /home/rotation14/export/openfold/examples/template_free_empty4 \
  --output_dir /home/rotation14/export/openfold/examples/monomer/output_dir \
  --use_precomputed_alignments /home/rotation14/export/openfold/examples/monomer/alignments \
  --config_preset model_3_ptm \
  --openfold_checkpoint_path /home/rotation14/export/openfold/openfold/resources/params/finetuning_no_templ_ptm_1.pt \
  --model_device "cuda:0"

template_free_empty4/ is an empty directory that I use as a placeholder for template_mmcif_dir, as suggested in the documentation.

I expected this to work since the checkpoint is trained without templates, and alignments are precomputed.

However, during inference I get an error complaining about missing .cif files.

Thanks in advance!