index.xml

<?xml version="1.0" encoding="utf-8" standalone="yes"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title/><link>https://alicanb.github.io/</link><atom:link href="https://alicanb.github.io/index.xml" rel="self" type="application/rss+xml"/><description/><generator>HugoBlox Kit (https://hugoblox.com)</generator><language>en-us</language><lastBuildDate>Mon, 01 Jan 2024 00:00:00 +0000</lastBuildDate><image><url>https://alicanb.github.io/media/icon_hu_ed8381e2c16d8b6b.png</url><title/><link>https://alicanb.github.io/</link></image><item><title>Screen Them All: High-Throughput Pan-Cancer Genetic and Phenotypic Biomarker Screening from H&amp;E Whole Slide Images</title><link>https://alicanb.github.io/publication/screen-them-all/</link><pubDate>Sun, 18 Aug 2024 00:00:00 +0000</pubDate><guid>https://alicanb.github.io/publication/screen-them-all/</guid><description/></item><item><title>A Foundation Model for Clinical-Grade Computational Pathology and Rare Cancers Detection</title><link>https://alicanb.github.io/publication/nm-virchow/</link><pubDate>Mon, 22 Jul 2024 00:00:00 +0000</pubDate><guid>https://alicanb.github.io/publication/nm-virchow/</guid><description/></item><item><title>Artificial Intelligence Helps Pathologists Increase Diagnostic Accuracy and Efficiency in the Detection of Breast Cancer Lymph Node Metastases</title><link>https://alicanb.github.io/publication/ajsp-lymphnode/</link><pubDate>Mon, 01 Jul 2024 00:00:00 +0000</pubDate><guid>https://alicanb.github.io/publication/ajsp-lymphnode/</guid><description/></item><item><title>Virchow: A Million-Slide Digital Pathology Foundation Model</title><link>https://alicanb.github.io/publication/virchow/</link><pubDate>Thu, 14 Sep 2023 00:00:00 +0000</pubDate><guid>https://alicanb.github.io/publication/virchow/</guid><description/></item><item><title>A Deep Learning Artificial Intelligence Algorithm Helps Pathologists Improve Diagnostic Accuracy and Efficiency in the Detection of Lymph Node Metastases in Breast Cancer Patients</title><link>https://alicanb.github.io/publication/labinv-ai-pathology/</link><pubDate>Wed, 01 Mar 2023 00:00:00 +0000</pubDate><guid>https://alicanb.github.io/publication/labinv-ai-pathology/</guid><description/></item><item><title>Abstract PD11-02: Subtyping Invasive Carcinomas and High-Risk Lesions for Machine Learning Based Breast Pathology</title><link>https://alicanb.github.io/publication/cr-breast-subtype/</link><pubDate>Tue, 15 Feb 2022 00:00:00 +0000</pubDate><guid>https://alicanb.github.io/publication/cr-breast-subtype/</guid><description/></item><item><title>Morphological Subtyping of Breast Cancer Using Machine Learning</title><link>https://alicanb.github.io/publication/jpath-breast-subtype/</link><pubDate>Mon, 01 Nov 2021 00:00:00 +0000</pubDate><guid>https://alicanb.github.io/publication/jpath-breast-subtype/</guid><description/></item><item><title>Skin Strata Delineation in Reflectance Confocal Microscopy Images Using Recurrent Convolutional Networks with Attention</title><link>https://alicanb.github.io/publication/scirep-skin-strata/</link><pubDate>Mon, 14 Jun 2021 00:00:00 +0000</pubDate><guid>https://alicanb.github.io/publication/scirep-skin-strata/</guid><description/></item><item><title>Morphological Breast Cancer Subtyping by Weakly Supervised Neural Networks</title><link>https://alicanb.github.io/publication/labinv-breast-subtype/</link><pubDate>Tue, 16 Mar 2021 00:00:00 +0000</pubDate><guid>https://alicanb.github.io/publication/labinv-breast-subtype/</guid><description/></item><item><title>Abstract PD6-03: Clinical-Grade Detection of Breast Cancer in Biopsies and Excisions Using Machine Learning</title><link>https://alicanb.github.io/publication/cr-breast-detect/</link><pubDate>Mon, 15 Feb 2021 00:00:00 +0000</pubDate><guid>https://alicanb.github.io/publication/cr-breast-detect/</guid><description/></item><item><title>Semantic Segmentation of Reflectance Confocal Microscopy Mosaics of Pigmented Lesions Using Weak Labels</title><link>https://alicanb.github.io/publication/scirep-weak-labels/</link><pubDate>Mon, 15 Feb 2021 00:00:00 +0000</pubDate><guid>https://alicanb.github.io/publication/scirep-weak-labels/</guid><description/></item><item><title>Rate-Regularization and Generalization in VAEs</title><link>https://alicanb.github.io/publication/aistats-ratereg/</link><pubDate>Mon, 11 Jan 2021 00:00:00 +0000</pubDate><guid>https://alicanb.github.io/publication/aistats-ratereg/</guid><description/></item><item><title>Detection of the DEJ and Segmentation of Its Morphological Patterns in RCM Images of Melanocytic Skin Lesions</title><link>https://alicanb.github.io/publication/oma-dej/</link><pubDate>Mon, 20 Apr 2020 00:00:00 +0000</pubDate><guid>https://alicanb.github.io/publication/oma-dej/</guid><description/></item><item><title>Deep Representation Learning for Complex Medical Images</title><link>https://alicanb.github.io/publication/phd_thesis/</link><pubDate>Mon, 13 Apr 2020 00:00:00 +0000</pubDate><guid>https://alicanb.github.io/publication/phd_thesis/</guid><description/></item><item><title>Segmentation of Cellular Patterns in Confocal Images of Melanocytic Lesions in vivo via a Multiscale Encoder-Decoder Network (MED-Net)</title><link>https://alicanb.github.io/publication/media-mednet/</link><pubDate>Wed, 01 Jan 2020 00:00:00 +0000</pubDate><guid>https://alicanb.github.io/publication/media-mednet/</guid><description/></item><item><title>Utilizing Machine Learning for Image Quality Assessment for Reflectance Confocal Microscopy</title><link>https://alicanb.github.io/publication/jid-mednet/</link><pubDate>Tue, 17 Dec 2019 00:00:00 +0000</pubDate><guid>https://alicanb.github.io/publication/jid-mednet/</guid><description/></item><item><title>Facilitating the Adoption of Reflectance Confocal Microscopy (RCM) in Clinical Cancer Care Practice with Machine Learning</title><link>https://alicanb.github.io/publication/stanford-fac/</link><pubDate>Thu, 08 Aug 2019 00:00:00 +0000</pubDate><guid>https://alicanb.github.io/publication/stanford-fac/</guid><description/></item><item><title>Structured Disentagled Representations</title><link>https://alicanb.github.io/publication/aistats-hfvae/</link><pubDate>Thu, 04 Apr 2019 00:00:00 +0000</pubDate><guid>https://alicanb.github.io/publication/aistats-hfvae/</guid><description/></item><item><title>Can VAEs generate novel examples?</title><link>https://alicanb.github.io/publication/cract-vae/</link><pubDate>Tue, 04 Dec 2018 00:00:00 +0000</pubDate><guid>https://alicanb.github.io/publication/cract-vae/</guid><description/></item><item><title>Deep Learning Methods for Predicting Disease Status Using Genomic Data</title><link>https://alicanb.github.io/publication/jbs-genomic/</link><pubDate>Mon, 01 Oct 2018 00:00:00 +0000</pubDate><guid>https://alicanb.github.io/publication/jbs-genomic/</guid><description/></item><item><title>A Multiresolution Convolutional Neural Network with Partial Label Training for Annotating Reflectance Confocal Microscopy Images of Skin</title><link>https://alicanb.github.io/publication/miccai-munet/</link><pubDate>Thu, 23 Aug 2018 00:00:00 +0000</pubDate><guid>https://alicanb.github.io/publication/miccai-munet/</guid><description/></item><item><title>A Multiresolution Deep Learning Framework for Automated Annotation of Reflectance Confocal Microscopy Images</title><link>https://alicanb.github.io/publication/osa-munet/</link><pubDate>Fri, 06 Apr 2018 00:00:00 +0000</pubDate><guid>https://alicanb.github.io/publication/osa-munet/</guid><description/></item><item><title>Delineation of Skin Strata in Reflectance Confocal Microscopy Images using Recurrent Convolutional Networks with Toeplitz Attention</title><link>https://alicanb.github.io/publication/ml4h-dej/</link><pubDate>Fri, 21 Jul 2017 00:00:00 +0000</pubDate><guid>https://alicanb.github.io/publication/ml4h-dej/</guid><description/></item><item><title>Delineation of Skin Strata in Reflectance Confocal Microscopy Images With Recurrent Convolutional Networks</title><link>https://alicanb.github.io/publication/cvmi-dej/</link><pubDate>Fri, 21 Jul 2017 00:00:00 +0000</pubDate><guid>https://alicanb.github.io/publication/cvmi-dej/</guid><description/></item><item><title>Deep learning based classification of morphological patterns in reflectance confocal microscopy to guide noninvasive diagnosis of melanocytic lesions</title><link>https://alicanb.github.io/publication/spie-mosaic/</link><pubDate>Sat, 28 Jan 2017 00:00:00 +0000</pubDate><guid>https://alicanb.github.io/publication/spie-mosaic/</guid><description/></item><item><title>Unsupervised delineation of stratum corneum using reflectance confocal microscopy and spectral clustering</title><link>https://alicanb.github.io/publication/srt-sc/</link><pubDate>Fri, 12 Aug 2016 00:00:00 +0000</pubDate><guid>https://alicanb.github.io/publication/srt-sc/</guid><description/></item><item><title>Expert diagnosis of plus disease in retinopathy of prematurity from computer-based image analysis</title><link>https://alicanb.github.io/publication/opthalmology-rop/</link><pubDate>Wed, 01 Jun 2016 00:00:00 +0000</pubDate><guid>https://alicanb.github.io/publication/opthalmology-rop/</guid><description/></item><item><title>Computer-Based Image Analysis for Plus Disease Diagnosis in Retinopathy of Prematurity: Performance of the “i-ROP” System and Image Features Associated With Expert Diagnosis</title><link>https://alicanb.github.io/publication/tvst-rop/</link><pubDate>Sun, 01 Nov 2015 00:00:00 +0000</pubDate><guid>https://alicanb.github.io/publication/tvst-rop/</guid><description/></item><item><title>Classifying fonts and calligraphy styles using complex wavelet transform</title><link>https://alicanb.github.io/publication/sivp-fonts/</link><pubDate>Thu, 23 Jul 2015 00:00:00 +0000</pubDate><guid>https://alicanb.github.io/publication/sivp-fonts/</guid><description>&lt;p&gt;
&lt;figure id="figure-example-classification-of-a-document"&gt;
&lt;div class="flex justify-center "&gt;
&lt;div class="w-full" &gt;
&lt;img alt="Example classification of a document"
srcset="https://alicanb.github.io/publication/sivp-fonts/fonts_hu_993e2e82ce3ecdcb.webp 320w, https://alicanb.github.io/publication/sivp-fonts/fonts_hu_7b896db4759f25a1.webp 480w, https://alicanb.github.io/publication/sivp-fonts/fonts_hu_86a44fb87abc5fc0.webp 760w"
sizes="(max-width: 480px) 100vw, (max-width: 768px) 90vw, (max-width: 1024px) 80vw, 760px"
src="https://alicanb.github.io/publication/sivp-fonts/fonts_hu_993e2e82ce3ecdcb.webp"
width="760"
height="721"
loading="lazy" data-zoomable /&gt;&lt;/div&gt;
&lt;/div&gt;&lt;figcaption&gt;
Example classification of a document
&lt;/figcaption&gt;&lt;/figure&gt;
&lt;/p&gt;</description></item><item><title>Multi-scale directional-filtering-based method for follicular lymphoma grading</title><link>https://alicanb.github.io/publication/sivp-fl/</link><pubDate>Thu, 07 Aug 2014 00:00:00 +0000</pubDate><guid>https://alicanb.github.io/publication/sivp-fl/</guid><description/></item><item><title>Deconvolution using projections onto the epigraph set of a convex cost function</title><link>https://alicanb.github.io/publication/siu-pocs-deconvolution/</link><pubDate>Thu, 12 Jun 2014 00:00:00 +0000</pubDate><guid>https://alicanb.github.io/publication/siu-pocs-deconvolution/</guid><description/></item><item><title>Projections onto convex sets (POCS) based optimization by lifting</title><link>https://alicanb.github.io/publication/globalsip-pocs/</link><pubDate>Thu, 13 Feb 2014 00:00:00 +0000</pubDate><guid>https://alicanb.github.io/publication/globalsip-pocs/</guid><description/></item></channel></rss>