Fix for elements_to_ignore_percentile and version bump

Author: alexandrutomescu

examples/cycles_percentile.py

@@ -35,7 +35,7 @@ def test():
         G=graph, 
         flow_attr="flow",
         weight_type=int,
-        trusted_edges_for_safety_percentile=0,
+        elements_to_ignore_percentile=50,
         )
     mpe_model.solve()
     process_solution(graph, "test_mpe_percentile", mpe_model)

flowpaths/kminpatherrorcycles.py

@@ -178,7 +178,9 @@ def __init__(
             # Select edges where the flow_attr value is >= elements_to_ignore_percentile (using self.G)
             flow_values = [self.G.edges[edge][flow_attr] for edge in self.G.edges() if flow_attr in self.G.edges[edge]]
             percentile = np.percentile(flow_values, elements_to_ignore_percentile) if flow_values else 0
-            edges_to_ignore_internal = [edge for edge in edges_to_ignore_internal if self.G.edges[edge][flow_attr] < percentile]
+            edges_to_ignore_internal = [edge for edge in self.G.edges() if flow_attr in self.G.edges[edge] and self.G.edges[edge][flow_attr] < percentile]
+
+        utils.logger.debug(f"{__name__}: edges_to_ignore_internal set to {edges_to_ignore_internal}")
 
         self.edges_to_ignore = self.G.source_sink_edges.union(edges_to_ignore_internal)
         self.edge_error_scaling = error_scaling_internal

pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "flowpaths"
-version = "0.2.11" 
+version = "0.2.12" 
 description = "A Python package to quickly decompose weighted graphs into weights paths, under various models."
 readme = "README.md"
 authors = [{name="Graph Algorithms and Bioinformatics Group @ University of Helsinki, and external collaborators"}]