diff --git a/content/publications.md b/content/publications.md index 5d75c68..e84a3c9 100644 --- a/content/publications.md +++ b/content/publications.md @@ -1,5 +1,7 @@ ## Preprints +- C. Coupette, J. Wayland, E. Simons, and B. Rieck: [*No Metric to Rule Them All: Toward Principled Evaluations of Graph-Learning Datasets*](https://arxiv.org/abs/2502.02379), Preprint, 2025
+ [\[Preprint\]](https://arxiv.org/abs/2502.02379) • [\[BibTeX\]](Coupette25a.bib) - B. Rieck: [*Topology Meets Machine Learning: An Introduction Using the Euler Characteristic Transform*](https://arxiv.org/abs/2410.17760), Preprint, 2024
[\[Preprint\]](https://arxiv.org/abs/2410.17760) • [\[BibTeX\]](Rieck24a.bib) - I. Cannistraci, E. Rodolà, and B. Rieck: [*Detecting and Approximating Redundant Computational Blocks in Neural Networks*](https://arxiv.org/abs/2410.04941), Preprint, 2024
@@ -8,8 +10,6 @@ [\[Preprint\]](https://arxiv.org/abs/2410.18987) • [\[BibTeX\]](Roell24b.bib) - J. von Rohrscheidt and B. Rieck: [*Diss-L-Ect: Dissecting Graph Data With Local Euler Characteristic Transforms*](https://arxiv.org/abs/2410.02622), Preprint, 2024
[\[Preprint\]](https://arxiv.org/abs/2410.02622) • [\[BibTeX\]](vonRohrscheidt24a.bib) -- R. Ballester, E. Röell, D. Bin Schmid, M. Alain, S. Escalera, C. Casacuberta, and B. Rieck: [*MANTRA: The Manifold Triangulations Assemblage*](https://arxiv.org/abs/2410.02392), Preprint, 2024
- [\[Preprint\]](https://arxiv.org/abs/2410.02392) • [\[BibTeX\]](Ballester24b.bib) - K. Limbeck and B. Rieck: [*Detecting Spatial Dependence in Transcriptomics Data Using Vectorised Persistence Diagrams*](https://arxiv.org/abs/2409.03575), Preprint, 2024
[\[Preprint\]](https://arxiv.org/abs/2409.03575) • [\[BibTeX\]](Limbeck24b.bib) - J. Wayland, R. J. Funk, and B. Rieck: [*Characterizing Physician Referral Networks With Ricci Curvature*](https://arxiv.org/abs/2408.16022), Preprint, 2024
@@ -24,8 +24,6 @@ [\[Preprint\]](https://arxiv.org/abs/2309.03616) • [\[BibTeX\]](Srambical23a.bib) - B. Rieck and C. Coupette: [*Evaluating the “Learning on Graphs” Conference Experience*](https://arxiv.org/abs/2306.00586), Preprint, 2023
[\[Preprint\]](https://arxiv.org/abs/2306.00586) • [\[BibTeX\]](Rieck23b.bib) -- L. Hetzel, J. Sommer, B. Rieck, F. Theis, and S. Günnemann: [*MAGNet: Motif-Agnostic Generation of Molecules From Shapes*](https://arxiv.org/abs/2305.19303), Preprint, 2023
- [\[Preprint\]](https://arxiv.org/abs/2305.19303) • [\[BibTeX\]](Hetzel23a.bib) - D. Bhaskar, J. Moore, F. Gao, B. Rieck, F. Khasawneh, E. Munch, V. Greco, and S. Krishnaswamy: [*Capturing Spatiotemporal Signaling Patterns in Cellular Data With Geometric Scattering Trajectory Homology*](https://dx.doi.org/10.1101/2023.03.22.533807), Preprint, 2023
[\[Preprint\]](https://biorxiv.org/content/10.1101/2023.03.22.533807) • [\[BibTeX\]](Bhaskar23a.bib) - C. Weis, B. Rieck, S. Balzer, A. Cuénod, A. Egli, and K. Borgwardt: [*Improved MALDI-TOF MS Based Antimicrobial Resistance Prediction Through Hierarchical Stratification*](https://dx.doi.org/10.1101/2022.04.13.488198), Preprint, 2022
@@ -38,8 +36,17 @@ presentation at the ICML Workshop on the Art of Learning with Missing Values (ARTEMISS) +## 2025 + +- L. Hetzel, J. Sommer, B. Rieck, F. Theis, and S. Günnemann: [*MAGNet: Motif-Agnostic Generation of Molecules From Shapes*](https://arxiv.org/abs/2305.19303), International Conference on Learning Representations, 2025 (in press)
+ [\[Preprint\]](https://arxiv.org/abs/2305.19303) • [\[BibTeX\]](Hetzel25a.bib) +- Y. Zhang, L. Mezrag, X. Sun, C. Xu, K. Macdonald, D. Bhaskar, S. Krishnaswamy, G. Wolf, and B. Rieck: [*Principal Curvatures Estimation With Applications to Single Cell Data*](https://arxiv.org/abs/2502.03750), IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), 2025 (in press)
+ [\[Preprint\]](https://arxiv.org/abs/2502.03750) • [\[BibTeX\]](Zhang25a.bib) + ## 2024 +- R. Ballester, E. Röell, D. Bin Schmid, M. Alain, S. Escalera, C. Casacuberta, and B. Rieck: [*MANTRA: The Manifold Triangulations Assemblage*](https://arxiv.org/abs/2410.02392), International Conference on Learning Representations, 2024 (in press)
+ [\[Preprint\]](https://arxiv.org/abs/2410.02392) • [\[BibTeX\]](Ballester25a.bib) - D. Buffelli, F. Soleymani, and B. Rieck: [*CliquePH: Higher-Order Information for Graph Neural Networks Through Persistent Homology on Clique Graphs*](https://arxiv.org/abs/2409.08217), Proceedings of the Third Learning on Graphs Conference, 2024 (in press)
[\[Preprint\]](https://arxiv.org/abs/2409.08217) • [\[BibTeX\]](Buffelli24a.bib) - J. von Rohrscheidt, B. Rieck, and S. M. Schmon: [*Bayesian Computation Meets Topology*](https://openreview.net/forum?id=0h1DtRK6dA), Transactions on Machine Learning Research, 2024
@@ -48,7 +55,7 @@ Learning with Missing Values (ARTEMISS) [\[BibTeX\]](Alain24a.bib) - R. Ballester and B. Rieck: [*On the Expressivity of Persistent Homology in Graph Learning*](https://arxiv.org/abs/2302.09826), Proceedings of the Third Learning on Graphs Conference, 2024 (in press)
[\[Preprint\]](https://arxiv.org/abs/2302.09826) • [\[BibTeX\]](Ballester24a.bib) -- K. Limbeck, R. Andreeva, R. Sarkar, and B. Rieck: [*Metric Space Magnitude for Evaluating the Diversity of Latent Representations*](https://arxiv.org/abs/2311.16054), Advances in Neural Information Processing Systems, Volume 37, 2024 (in press)
+- K. Limbeck, R. Andreeva, R. Sarkar, and B. Rieck: [*Metric Space Magnitude for Evaluating the Diversity of Latent Representations*](https://proceedings.neurips.cc/paper_files/paper/2024/file/dfc24bd3ec5d74960e104268bbb52849-Paper-Conference.pdf), Advances in Neural Information Processing Systems, Volume 37, pp. 123911--123953, 2024
[\[Preprint\]](https://arxiv.org/abs/2311.16054) • [\[BibTeX\]](Limbeck24a.bib) - T. Papamarkou, T. Birdal, M. Bronstein, G. Carlsson, J. Curry, Y. Gao, M. Hajij, R. Kwitt, P. Liò, P. Di Lorenzo, V. Maroulas, N. Miolane, F. Nasrin, K. N. Ramamurthy, B. Rieck, S. Scardapane, M. T. Schaub, P. Veličković, B. Wang, Y. Wang, G. Wei, and G. Zamzmi: [*Position: Topological Deep Learning Is the New Frontier for Relational Learning*](https://proceedings.mlr.press/v235/papamarkou24a.html), Proceedings of the 41st International Conference on Machine Learning, Number 235, pp. 39529--39555, 2024
[\[Preprint\]](https://arxiv.org/abs/2402.08871) • [\[BibTeX\]](Papamarkou24a.bib) diff --git a/static/research/Ballester23a.bib b/static/research/Ballester23a.bib deleted file mode 100644 index f9a0e6f..0000000 --- a/static/research/Ballester23a.bib +++ /dev/null @@ -1,10 +0,0 @@ -@unpublished{Ballester23a, - archiveprefix = {arXiv}, - author = {Rubén Ballester and Bastian Rieck}, - author+an = {2=highlight}, - eprint = {2302.09826}, - primaryclass = {cs.LG}, - title = {On the Expressivity of Persistent Homology in Graph Learning}, - type = {Preprint}, - year = {2023}, -} diff --git a/static/research/Ballester24b.bib b/static/research/Ballester25a.bib similarity index 71% rename from static/research/Ballester24b.bib rename to static/research/Ballester25a.bib index 4380916..6643c38 100644 --- a/static/research/Ballester24b.bib +++ b/static/research/Ballester25a.bib @@ -1,10 +1,12 @@ -@unpublished{Ballester24b, +@inproceedings{Ballester25a, archiveprefix = {arXiv}, author = {Rubén Ballester and Ernst Röell and Daniel Bin Schmid and Mathieu Alain and Sergio Escalera and Carles Casacuberta and Bastian Rieck}, author+an = {1=first; 2=first; 3=first; 4=first; 7=highlight}, + booktitle = {International Conference on Learning Representations}, eprint = {2410.02392}, + keywords = {CORE-A*}, primaryclass = {cs.LG}, + pubstate = {inpress}, title = {MANTRA: The Manifold Triangulations Assemblage}, - type = {Preprint}, year = {2024}, } diff --git a/static/research/Coupette25a.bib b/static/research/Coupette25a.bib new file mode 100644 index 0000000..cd1b882 --- /dev/null +++ b/static/research/Coupette25a.bib @@ -0,0 +1,10 @@ +@unpublished{Coupette25a, + archiveprefix = {arXiv}, + author = {Corinna Coupette and Jeremy Wayland and Emily Simons and Bastian Rieck}, + author+an = {1=first; 2=first; 4=highlight}, + eprint = {2502.02379}, + primaryclass = {cs.LG}, + title = {No Metric to Rule Them All: Toward Principled Evaluations of Graph-Learning Datasets}, + type = {Preprint}, + year = {2025}, +} diff --git a/static/research/Hetzel23a.bib b/static/research/Hetzel25a.bib similarity index 66% rename from static/research/Hetzel23a.bib rename to static/research/Hetzel25a.bib index ae5dd2d..e1dc375 100644 --- a/static/research/Hetzel23a.bib +++ b/static/research/Hetzel25a.bib @@ -1,10 +1,12 @@ -@unpublished{Hetzel23a, +@inproceedings{Hetzel25a, archiveprefix = {arXiv}, author = {Leon Hetzel and Johanna Sommer and Bastian Rieck and Fabian Theis and Stephan Günnemann}, author+an = {1=first; 2=first; 3=highlight}, + booktitle = {International Conference on Learning Representations}, eprint = {2305.19303}, + keywords = {CORE-A*}, primaryclass = {physics.chem-ph}, + pubstate = {inpress}, title = {{MAGNet}: Motif-Agnostic Generation of Molecules from Shapes}, - type = {Preprint}, - year = {2023}, + year = {2025}, } diff --git a/static/research/Limbeck24a.bib b/static/research/Limbeck24a.bib index bebb2f9..692ec35 100644 --- a/static/research/Limbeck24a.bib +++ b/static/research/Limbeck24a.bib @@ -3,12 +3,14 @@ @inproceedings{Limbeck24a author = {Katharina Limbeck and Rayna Andreeva and Rik Sarkar and Bastian Rieck}, author+an = {4=highlight}, booktitle = {Advances in Neural Information Processing Systems}, + editor = {A. Globerson and L. Mackey and D. Belgrave and A. Fan and U. Paquet and J. Tomczak and C. Zhang}, eprint = {2311.16054}, keywords = {CORE-A*}, + pages = {123911--123953}, primaryclass = {cs.LG}, publisher = {Curran Associates, Inc.}, - pubstate = {inpress}, title = {Metric Space Magnitude for Evaluating the Diversity of Latent Representations}, + url = {https://proceedings.neurips.cc/paper_files/paper/2024/file/dfc24bd3ec5d74960e104268bbb52849-Paper-Conference.pdf}, volume = {37}, year = {2024}, } diff --git a/static/research/Zhang25a.bib b/static/research/Zhang25a.bib new file mode 100644 index 0000000..691abfc --- /dev/null +++ b/static/research/Zhang25a.bib @@ -0,0 +1,11 @@ +@inproceedings{Zhang25a, + archiveprefix = {arXiv}, + author = {Yanlei Zhang and Lydia Mezrag and Xingzhi Sun and Charles Xu and Kincaid Macdonald and Dhananjay Bhaskar and Smita Krishnaswamy and Guy Wolf and Bastian Rieck}, + author+an = {7=last; 8=last; 9=last,highlight}, + booktitle = {IEEE International Conference on Acoustics, Speech and Signal Processing~(ICASSP)}, + eprint = {2502.03750}, + primaryclass = {cs.LG}, + pubstate = {inpress}, + title = {Principal Curvatures Estimation with Applications to Single Cell Data}, + year = {2025}, +}