refua-data/pyproject.toml at main · agentcures/refua-data · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
[build-system]
requires = ["setuptools>=68", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "refua-data"
version = "0.7.1"
description = "Data ingestion, caching, and parquet materialization for the Refua drug discovery ecosystem."
readme = "README.md"
requires-python = ">=3.11,<3.15"
license = "MIT"
license-files = ["LICENSE"]
authors = [{name = "JJ Ben-Joseph", email = "[email protected]"}]
keywords = [
  "drug discovery",
  "data engineering",
  "cheminformatics",
  "bioinformatics",
  "parquet",
  "refua",
]
classifiers = [
  "Development Status :: 4 - Beta",
  "Intended Audience :: Science/Research",
  "Operating System :: OS Independent",
  "Programming Language :: Python :: 3",
  "Programming Language :: Python :: 3.11",
  "Programming Language :: Python :: 3.12",
  "Programming Language :: Python :: 3.13",
  "Programming Language :: Python :: 3.14",
  "Topic :: Scientific/Engineering :: Bio-Informatics",
  "Topic :: Scientific/Engineering :: Chemistry",
  "Topic :: Scientific/Engineering :: Artificial Intelligence",
]
dependencies = [
  "pandas>=2.2.2",
  "pyarrow>=18.0.0",
  "openpyxl>=3.1.5",
  "requests>=2.32.3",
  "tqdm>=4.66.0",
]

[project.urls]
Homepage = "https://agentcures.com/"
Repository = "https://github.com/agentcures/refua"
Documentation = "https://github.com/agentcures/refua#readme"
Issues = "https://github.com/agentcures/refua/issues"

[project.optional-dependencies]
dev = [
  "pytest>=8.0.0",
  "ruff>=0.6.0",
  "mypy>=1.11.0",
  "pre-commit>=4.5.1",
  "pandas-stubs>=2.2.3.250527",
  "types-requests>=2.32.0.20241016",
  "build>=1.2.2",
  "twine>=6.1.0",
]

[project.scripts]
refua-data = "refua_data.cli:main"

[tool.setuptools.packages.find]
where = ["src"]

[tool.setuptools]
include-package-data = true

[tool.pytest.ini_options]
pythonpath = ["src"]
testpaths = ["tests"]

[tool.ruff]
line-length = 100
target-version = "py311"

[tool.ruff.lint]
select = ["E", "F", "I", "UP", "B"]

[tool.mypy]
python_version = "3.11"
warn_unused_ignores = true
disallow_untyped_defs = true
check_untyped_defs = true
strict_optional = true