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generate_simulated_data.py
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140 lines (121 loc) · 5.52 KB
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import json
import uuid
import numpy as np
from datetime import datetime, timedelta
class NumpyEncoder(json.JSONEncoder):
def default(self, obj):
if isinstance(obj, np.integer):
return int(obj)
elif isinstance(obj, np.floating):
return float(obj)
elif isinstance(obj, np.ndarray):
return obj.tolist()
return super(NumpyEncoder, self).default(obj)
def normalize_probs(probs):
"""Normalize probabilities to sum to 1"""
probs = np.array(probs, dtype=float)
return probs / np.sum(probs)
def generate_participant_data(is_control=True):
"""Generate data for one participant
Args:
is_control: If True, generates data for normal controls who learn to avoid bad decks
If False, generates data for prefrontal patients who persist with bad decks
"""
history = []
total_money = 2000 # Initial loan as per original paper
deck_counts = {'A': 0, 'B': 0, 'C': 0, 'D': 0}
# Deck configurations exactly matching Bechara et al. 1994
deck_configs = {
'A': {'reward': 100, 'penalty': -250, 'penalty_prob': 0.5}, # EV = -25
'B': {'reward': 100, 'penalty': -250, 'penalty_prob': 0.5}, # EV = -25
'C': {'reward': 50, 'penalty': -50, 'penalty_prob': 0.5}, # EV = +25
'D': {'reward': 50, 'penalty': -50, 'penalty_prob': 0.5} # EV = +25
}
# Learning parameters based on paper
exploration_phase = np.random.randint(10, 20) # Initial exploration
learning_phase = np.random.randint(30, 50) if is_control else 999 # Controls learn, patients don't
for trial in range(100): # 100 trials as per original paper
# Probability distribution for deck selection
if trial < exploration_phase:
# Initial exploration phase - roughly equal probabilities
probs = normalize_probs([0.25, 0.25, 0.25, 0.25])
elif is_control and trial >= learning_phase:
# Control subjects learn to prefer advantageous decks (C & D)
base_probs = [0.1, 0.1, 0.4, 0.4]
noise = 0.1 * np.random.random(4)
probs = normalize_probs([p + n for p, n in zip(base_probs, noise)])
else:
# Pre-learning or patient behavior - preference for high immediate reward (A & B)
base_probs = [0.4, 0.4, 0.1, 0.1]
noise = 0.2 * np.random.random(4)
probs = normalize_probs([p + n for p, n in zip(base_probs, noise)])
# Select deck
deck = np.random.choice(['A', 'B', 'C', 'D'], p=probs)
deck_counts[deck] += 1
# Calculate reward and penalty
config = deck_configs[deck]
reward = config['reward']
penalty = config['penalty'] if np.random.random() < config['penalty_prob'] else 0
net_reward = reward + penalty
total_money += net_reward
# Record trial data
history.append({
'trial': trial + 1,
'deck': deck,
'reward': float(reward),
'penalty': float(penalty),
'net_reward': float(net_reward),
'total_money': float(total_money),
'reaction_time': float(np.random.uniform(0.8, 2.5)) # Slightly longer RTs based on paper
})
# Calculate metrics
total_trials = float(len(history))
deck_preferences = {
f'deck_{k}': float(v / total_trials * 100)
for k, v in deck_counts.items()
}
# Calculate metrics mentioned in the paper
blocks = [history[i:i+20] for i in range(0, len(history), 20)] # Split into 5 blocks of 20 trials
block_preferences = []
for block in blocks:
block_counts = {'A': 0, 'B': 0, 'C': 0, 'D': 0}
for trial in block:
block_counts[trial['deck']] += 1
good_choices = block_counts['C'] + block_counts['D']
bad_choices = block_counts['A'] + block_counts['B']
block_preferences.append((good_choices - bad_choices) / len(block))
metrics = {
'total_money': float(total_money),
'completed_trials': len(history),
'deck_preferences': deck_preferences,
'advantageous_choices': float((deck_counts['C'] + deck_counts['D']) / total_trials * 100),
'disadvantageous_choices': float((deck_counts['A'] + deck_counts['B']) / total_trials * 100),
'block_preferences': block_preferences,
'average_reaction_time': float(np.mean([t['reaction_time'] for t in history]))
}
return {
'id': str(uuid.uuid4()),
'type': 'control' if is_control else 'patient',
'metrics': metrics,
'history': history
}
# Generate data
simulated_data = []
base_time = datetime.now() - timedelta(days=7)
# Generate control data (80% of participants)
for _ in range(80):
data = generate_participant_data(is_control=True)
data['timestamp'] = (base_time + timedelta(hours=np.random.randint(0, 24*7))).isoformat()
simulated_data.append(data)
# Generate patient-like data (20% of participants)
for _ in range(20):
data = generate_participant_data(is_control=False)
data['timestamp'] = (base_time + timedelta(hours=np.random.randint(0, 24*7))).isoformat()
simulated_data.append(data)
# Save to file
with open('simulated_igt_data.json', 'w') as f:
json.dump(simulated_data, f, indent=2, cls=NumpyEncoder)
print(f"Generated {len(simulated_data)} simulated participants data")
print("Sample metrics from first participant:")
print(json.dumps(simulated_data[0]['metrics'], indent=2, cls=NumpyEncoder))
print("\nData saved to simulated_igt_data.json")