diff --git a/.gitignore b/.gitignore index 3ee1ee0..d0d4234 100644 --- a/.gitignore +++ b/.gitignore @@ -48,3 +48,4 @@ blog/dsa/leetcode/calendar_2/_oops_files/ .env.actions blog/posts/keywords/*.svg blog/build-prod +blog/posts/**/*.svg diff --git a/README.md b/README.md index bc110fd..894154d 100644 --- a/README.md +++ b/README.md @@ -5,8 +5,12 @@ To see coverage reports, got see [the artifacts on github pages](https://acederb # Running -For all set ups, make the configuration dir ``config`` and provide your kaggle -configuration in ``config/kaggle/kaggle.json``. +For all set ups, make the configuration dir ``config`` and provide the kaggle +configuration in ``config/kaggle/kaggle.json``: + +```bash +mkdir config/kaggle -p +``` ## With Docker Compose @@ -23,17 +27,53 @@ This will provide access to ``quarto``, ``python``, and ``r``. ## The Hard Way -First, ensure that ``quarto`` is installed. Then setup a virtual environment and -add install the dependencies using ``poetry``: +First, ensure that ``quarto>=1.6`` is installed. Then set up a virtual +environment using `pyenv` and add install the dependencies using ``poetry``: ```bash -python -m venv .venv -source .venv/bin/activate -python -m pip install poetry +# Add python 3.11 +pyenv install 3.11 + +# Create a virual environment +pyenv virtualenv 3.11 blog + +# Make sure that the executables are seen +export PATH=$PATH:$VIRTUAL_ENV/bin + +# Verify python version. Should be under ``~/.pyenv`` +which python +which pip + +# Install poetry +pip install poetry + +# Install with poetry poetry install + +# Run the development server +acederbergio serve dev ``` +# Editing + +In theory this should work but I am yet to do this myself. So be aware this is +only roughly the process of setting up neovim to play nice with the project +and virtual environment. + +```bash +# Create an ipython kernel. This is necessary to use `molten.nvim` inside of +# neovim. It neads `pynvim` to be setup correctly. +poetry run pip install pynvim +poetry run python -m ipykernal install --user --name blog + +git clone https://github.com/acederberg/nvim-ez --output=~/.config/nvim +``` + +Next, open `neovim` and run `:Lazy` in normal and then install the dependencies +by hitting `I`. + + # Building To render the website, just diff --git a/acederbergio/__main__.py b/acederbergio/__main__.py index 984e248..830989e 100644 --- a/acederbergio/__main__.py +++ b/acederbergio/__main__.py @@ -2,16 +2,18 @@ from acederbergio.api.main import cli as cli_server from acederbergio.api.quarto import cli as cli_quarto -from acederbergio.pdf import cli as cli_pdf +from acederbergio.bucket import cli as cli_bucket from acederbergio.config import cli as cli_config from acederbergio.db import cli as cli_db from acederbergio.docs import cli as cli_docs from acederbergio.env import cli as cli_env from acederbergio.filters.__main__ import cli as cli_filters from acederbergio.iconify import cli as cli_iconify_kubernetes +from acederbergio.pdf import cli as cli_pdf from acederbergio.verify import cli as cli_verify cli = typer.Typer(pretty_exceptions_enable=False) +cli.add_typer(cli_bucket, name="bucket") cli.add_typer(cli_pdf, name="pdf") cli.add_typer(cli_quarto, name="quarto") cli.add_typer(cli_server, name="serve") diff --git a/acederbergio/bucket.py b/acederbergio/bucket.py new file mode 100644 index 0000000..7cf54a1 --- /dev/null +++ b/acederbergio/bucket.py @@ -0,0 +1,478 @@ +"""Bucket for images using Linode object storage. :rocket: + +This is done using the Linode cloud API directly. + +.. seealso:: + + https://techdocs.akamai.com/linode-api/reference/post-object-storage-bucket + + +For now, the bucket will be available on `bucket.acederberg.io`. +At the end of this file there is commented out code. I was playing with making +requests directly to `s3` but the bucket uses `AWS` signed authentication, +which requires a great deal of overhead. +""" + +import asyncio +import contextlib +from datetime import datetime +from typing import Annotated, Generic, NamedTuple, Self, TypeVar + +import httpx +import pydantic +import rich +import rich.panel +import rich.syntax +import typer +import yaml +import yaml_settings_pydantic as ysp + +from acederbergio import env, util + +logger = env.create_logger(__name__) + +URL_BUCKETS = "https://api.linode.com/v4/object-storage" +CONFIG = env.CONFIGS / "bucket.yaml" +STATE = env.CONFIGS / "bucket.state.yaml" + + +class BucketConfig(ysp.BaseYamlSettings): + """Bucket configuration. + + Should be stored at the path specified by ``Config``. + """ + + model_config = ysp.YamlSettingsConfigDict( + yaml_files={CONFIG: ysp.YamlFileConfigDict(required=True)} + ) + + prefix: Annotated[str, pydantic.Field("acederbergio")] + region: Annotated[str, pydantic.Field("us-lax")] + token: Annotated[pydantic.SecretStr, pydantic.Field()] + + s3_access_key_maybe: Annotated[ + pydantic.SecretStr | None, pydantic.Field(None, alias="s3_access_key") + ] + s3_secret_key_maybe: Annotated[ + pydantic.SecretStr | None, pydantic.Field(None, alias="s3_secret_key") + ] + + @property + def s3_secret_key(self) -> pydantic.SecretStr: + if (key := self.s3_secret_key_maybe) is None: + raise ValueError() + + return key + + @property + def s3_access_key(self) -> pydantic.SecretStr: + if (key := self.s3_access_key_maybe) is None: + raise ValueError() + + return key + + @pydantic.computed_field # type: ignore[prop-decorator] + @property + def headers(self) -> dict[str, str]: + """Headers for Linode requrests.""" + return { + "accept": "application/json", + "content-type": "application/json", + "authorization": f"Bearer {self.token.get_secret_value()}", + } + + def req_create_bucket(self) -> httpx.Request: + """ + Create the object storage bucket. + + - https://techdocs.akamai.com/linode-api/reference/post-object-storage-bucket + """ + + return httpx.Request( + method="POST", + url=URL_BUCKETS + "/buckets", + json=dict( + acl="private", + cors_enabled=True, + versioning=True, + region=self.region, + label=f"{self.prefix}-object-storage", + ), + headers=self.headers, + ) + + +class BucketKey(pydantic.BaseModel): + """ + Bucket key object. + + Data is pulled down from the API. + """ + + label: str + id: int + limited: bool + access_key: str + secret_key: pydantic.SecretStr + + @pydantic.field_serializer("secret_key", when_used="json") + def dump_secret(self, v): + return v.get_secret_value() + + def req_destroy(self, config: BucketConfig) -> httpx.Request: + """ + Remove the object storage key. + + - + """ + return httpx.Request( + method="DELETE", + url=URL_BUCKETS + f"/keys/{ self.id }", + headers=config.headers, + ) + + def req_get(self, config: BucketConfig) -> httpx.Request: + url = URL_BUCKETS + f"/keys/{ self.id }" + return httpx.Request(method="GET", url=url, headers=config.headers) + + +class Bucket(pydantic.BaseModel): + """Bucket object. + + Data is pulled down from the API. + """ + + created: util.FieldTime + hostname: str + label: str + objects: int + region: str + s3_endpoint: str + size: int + + def req_create_access_key(self, config: BucketConfig) -> httpx.Request: + """ + Create the access key. + + - https://techdocs.akamai.com/linode-api/reference/post-object-storage-keys + """ + + return httpx.Request( + method="POST", + url=URL_BUCKETS + "/keys", + json=dict( + bucket_access=[ + dict( + bucket_name=self.label, + permissions="read_write", + region=self.region, + ) + ], + label=f"{config.prefix}-object-storage-key", + ), + headers=config.headers, + ) + + def req_get(self, config: BucketConfig) -> httpx.Request: + """ + Get the bucket. + + - https://techdocs.akamai.com/linode-api/reference/get-object-storage-buckets + """ + + url = URL_BUCKETS + f"/buckets/{self.region}/{self.label}" + return httpx.Request(method="GET", url=url, headers=config.headers) + + def create_s3_url(self, *parts: str) -> str: + + return "https://" + "/".join((self.hostname, "/".join(parts))) + + +T_ProvisionInfo = TypeVar("T_ProvisionInfo") + + +class ProvisionInfo(NamedTuple, Generic[T_ProvisionInfo]): + """ + Response for methods of :class:`BucketHandler`. + """ + + data: T_ProvisionInfo + response: httpx.Response | None + + +class BucketState(ysp.BaseYamlSettings): + """ + Bucket state. + + Data can be refreshed using the :class:`BucketHandler` with the `verify` + option true. + + The context manager :func:`BucketHandler.context` will load this and dump it + when the context ends. + """ + + bucket: Annotated[Bucket | None, pydantic.Field(None)] + key: Annotated[BucketKey | None, pydantic.Field(None)] + saved: Annotated[datetime | None, pydantic.Field(None)] + + model_config = ysp.YamlSettingsConfigDict( + yaml_files={STATE: ysp.YamlFileConfigDict(required=False)} + ) + + def save(self): + self.saved = datetime.now() + with open(STATE, "w") as file: + yaml.dump(self.model_dump(mode="json"), file) + + +class BucketHandler(pydantic.BaseModel): + + state: BucketState + config: BucketConfig + verify: bool = False + + @contextlib.contextmanager + @staticmethod + def context(save: bool = True): + with util.catch_httpx(): + handler = BucketHandler.fromYaml() + yield handler + + if save: + handler.state.save() + + @classmethod + def fromYaml(cls) -> Self: + return cls(state=BucketState(), config=BucketConfig()) # type: ignore[call-arg] + + async def ensure_bucket(self, client: httpx.AsyncClient) -> ProvisionInfo[Bucket]: + + response = None + if self.state.bucket is None: + response = await client.send(self.config.req_create_bucket()) + elif self.verify: + response = await client.send(self.state.bucket.req_get(self.config)) + + if response is not None: + response.raise_for_status() + self.state.bucket = Bucket.model_validate(response.json()) + + if self.state.bucket is None: + raise ValueError() + + return ProvisionInfo(self.state.bucket, response) + + async def ensure_key(self, client: httpx.AsyncClient) -> ProvisionInfo[BucketKey]: + + if (bucket := self.state.bucket) is None: + raise ValueError() + + response = None + if self.state.key is None: + response = await client.send(bucket.req_create_access_key(self.config)) + elif self.verify: + response = await client.send(self.state.key.req_get(self.config)) + + if response is not None: + response.raise_for_status() + self.state.key = BucketKey.model_validate(response.json()) + + if (key := self.state.key) is None: + raise ValueError() + + return ProvisionInfo(key, response) + + async def up(self): + + async with httpx.AsyncClient() as client: + info_bucket = await self.ensure_bucket(client) + if (response := info_bucket.response) is not None: + if response.status_code == 200: + rich.print("[green]Ensured bucket.") + elif response.status_code == 201: + rich.print("[green]New bucket created 🚀") + else: + rich.print("[blue]Bucket already exists.") + + info_key = await self.ensure_key(client) + if response := info_key.response: + if response.request.method == "GET": + rich.print("[green]Ensured access key.") + if response.request.method == "POST": + + # NOTE: Make sure that the key is shown to the user, since + # it will not be shown again with `GET`. + assert self.state.key + code = ( + f"s3_secret_key: {self.state.key.secret_key.get_secret_value()}" + ) + code += "\n" + code += f"s3_access_key: `{self.state.key.access_key}`" + + rich.print( + rich.panel.Panel( + rich.console.Group( + f"[bold yellow]Copy to `{CONFIG}`.\n", + rich.syntax.Syntax( + code=code, lexer="yaml", background_color="default" + ), + "\n", + "Use this information to configure s3cmd.", + "See https://techdocs.akamai.com/cloud-computing/docs/using-s3cmd-with-object-storage", + "\n", + ), + title="[red]Bucket Access Key", + subtitle="[yellow]This will only be printed once!", + style="bold yellow", + ) + ) + else: + rich.print("[blue]Bucket key already exists.") + + async def down(self): + if self.state.key is None: + rich.print("[green]No access key to revoke.") + raise typer.Exit(0) + + async with httpx.AsyncClient() as client: + response = await client.send(self.state.key.req_destroy(self.config)) + response.raise_for_status() + rich.print("[green]Successfully revoked access key.") + self.state.key = None + + +cli = typer.Typer() + + +@cli.command("up") +def cli_up(verify: bool = False): + + with BucketHandler.context() as handler: + handler.verify = verify + asyncio.run(handler.up()) + + +@cli.command("down") +def cli_down(): + "Only deletes keys." + + with BucketHandler.context() as handler: + asyncio.run(handler.down()) + + +@cli.command("show") +def cli_show(): + + handler = BucketHandler.fromYaml() + util.print_yaml(handler, rule_title="Bucket Handler") + + +# def get_headers_s3( +# self, +# resource: str, +# *, +# method: str, +# content_type: str | None = None, +# ) -> dict[str, str]: +# """Headers for requests to the s3 bucket itself. +# +# .. seealso:: +# https://docs.aws.amazon.com/AmazonS3/latest/API/RESTAuthentication.html +# https://glacius.tmont.com/articles/uploading-to-s3-in-bash +# """ +# +# +# if self.s3_access_key_maybe is None: +# raise ValueError +# +# # Should match `date -R` which should be RFC5322 complient. +# ts = datetime.now(UTC).replace(microsecond=0) +# date = format_datetime(ts, usegmt=True) +# string_to_sign = "\n".join( +# filter( +# lambda item: item is not None, +# (method, "\n", content_type, date, resource), +# ) +# ) +# print(string_to_sign) +# +# secret = self.s3_secret_key.get_secret_value().encode("utf-8") +# sig_raw = hmac.new( +# secret, string_to_sign.encode("utf-8"), hashlib.sha1 +# ).digest() +# sig = base64.b64encode(sig_raw).decode("utf-8") +# +# return { +# "Authorization": f"AWS {self.s3_access_key}:{sig}", +# "Content-Type": "application/x-svg", +# } + +# NOTE: Auth is such a pain I'll just use s3cmd. +# def req_upload_object( +# self, config: BucketConfig, *object_name: str, content: bytes +# ) -> httpx.Request: +# +# return httpx.Request( +# method="PUT", +# url=self.create_s3_url(*object_name), +# content=content, +# headers=config.headers_s3, +# ) +# +# def req_get_object(self, config: BucketConfig, *object_name) -> httpx.Request: +# +# return httpx.Request( +# method="GET", +# url=self.create_s3_url(*object_name), +# headers=config.get_headers_s3("/" + "/".join(object_name), method="GET"), +# ) + +# async def upload_object(self): +# async with httpx.AsyncClient() as client: +# bucket, _ = await self.ensure_bucket(client) +# response = await client.send( +# bucket.req_upload_object( +# self.config, +# "/test/test_1.txt", +# content="This is a test".encode(), +# ) +# ) +# response.raise_for_status() +# +# util.print_yaml(response.json(), rule_title="Upload Successful!") +# +# async def get_object(self, *obj: str): +# async with httpx.AsyncClient() as client: +# bucket, _ = await self.ensure_bucket(client) +# +# response = await client.send(bucket.req_get_object(self.config, *obj)) +# response.raise_for_status() +# +# util.print_yaml(response.json(), rule_title="Reponse Data") + + +# @cli.command("upload") +# def cli_upload(): +# +# with BucketHandler.context(save=False) as handler: +# asyncio.run(handler.upload_object()) +# +# +# @cli.command("get") +# def cli_get(): +# with BucketHandler.context(save=False) as handler: +# asyncio.run(handler.get_object("kube-red.svg")) + + +# @cli.command("regions") +# def cli_regions(): +# +# async def doit(): +# async with httpx.AsyncClient() as client: +# response = await client.send(handler.config.req_regions()) +# response.raise_for_status() +# +# util.print_yaml(response.json(), title="Available Regions") +# +# with bucket_context() as handler: +# asyncio.run(doit()) diff --git a/acederbergio/env.py b/acederbergio/env.py index 1da7539..90a704e 100644 --- a/acederbergio/env.py +++ b/acederbergio/env.py @@ -276,6 +276,7 @@ def create_logging_config() -> dict[str, Any]: "acederbergio.filters.under_construction": config_pandoc_filters, "acederbergio.filters.iframe": config_pandoc_filters, "acederbergio.filters.util": config_pandoc_filters, + "acederbergio.filters.mermaid": config_pandoc_filters, "acederbergio.filters.live": config_pandoc_filters, # API "acederbergio.api.base": config_api, diff --git a/acederbergio/filters/__init__.py b/acederbergio/filters/__init__.py index 19f9ad8..75b7319 100644 --- a/acederbergio/filters/__init__.py +++ b/acederbergio/filters/__init__.py @@ -9,6 +9,7 @@ from .iframe import FilterIFrame from .links import FilterLinks from .live import FilterLive +from .mermaid import FilterMermaidExport from .minipage import FilterMinipage from .overlay import FilterOverlay from .resume import FilterResume @@ -16,6 +17,7 @@ from .under_construction import FilterUnderConstruction __all__ = ( + "FilterMermaidExport", "FilterContacts", "FilterFloaty", "FilterIFrame", diff --git a/acederbergio/filters/contacts.py b/acederbergio/filters/contacts.py index 9194769..bdf34a1 100644 --- a/acederbergio/filters/contacts.py +++ b/acederbergio/filters/contacts.py @@ -33,6 +33,9 @@ class ConfigContacts( # NOTE: Only expects one config. class Config(util.BaseConfig): + + include_descriptions: Annotated[bool, pydantic.Field(default=True)] + contacts: Annotated[ dict[str, ConfigContacts | None], pydantic.Field(None), diff --git a/acederbergio/filters/floaty.py b/acederbergio/filters/floaty.py index e6584a7..8ee8c7e 100644 --- a/acederbergio/filters/floaty.py +++ b/acederbergio/filters/floaty.py @@ -30,7 +30,7 @@ pydantic.Field(default_factory=lambda: secrets.token_urlsafe(8)), ] FieldMode = Annotated[ - Literal["bootstrap", "iconify"], + Literal["bootstrap", "iconify", "img"], pydantic.Field(default="iconify"), ] FieldModeOptional = Annotated[FieldMode | None, pydantic.Field(None)] @@ -104,6 +104,10 @@ class ConfigFloatyItemTex(BaseConfigFloatyItemImageItem): font_awesome: str +class ConfigFloatyItemImg(BaseConfigFloatyItemImageItem): + url: str + + class ConfigFloatyItemImage(util.BaseConfig): tex: Annotated[ ConfigFloatyItemTex, @@ -112,6 +116,8 @@ class ConfigFloatyItemImage(util.BaseConfig): validate_default=True, ), ] + + img: Annotated[ConfigFloatyItemImg | None, pydantic.Field(None)] iconify: Annotated[ ConfigFloatyItemIconify, pydantic.Field( @@ -165,7 +171,7 @@ class ConfigFloatyItem(util.BaseConfig, Generic[T_ConfigFloatyContainer]): classes_body: util.FieldClasses attributes: Annotated[dict[str, str], pydantic.Field(default_factory=dict)] - @pydantic.computed_field # type: ignore[prop-decorator] + @pydantic.computed_field # type: ignore[prop-decorator] @property def container(self) -> T_ConfigFloatyContainer: if self.container_maybe is None: @@ -177,12 +183,12 @@ def container(self) -> T_ConfigFloatyContainer: def serialize_container(self, v) -> bool: return v is not None - @pydantic.computed_field # type: ignore[prop-decorator] + @pydantic.computed_field # type: ignore[prop-decorator] @property def is_container(self) -> bool: return self.container.columns < 0 - @pydantic.computed_field# type: ignore[prop-decorator] + @pydantic.computed_field # type: ignore[prop-decorator] @property def class_base_name(self) -> str: return "floaty-item" if self.is_container else "card" @@ -216,12 +222,18 @@ def get_classes_image(self, *, mode: FieldMode | None = None): if mode == "iconify": classes = util.update_classes(classes, self.image.iconify.classes) - else: + elif mode == "bootstrap": classes = util.update_classes( classes, ["bi", f"bi-{self.image.bootstrap.name}"], self.image.bootstrap.classes, ) + elif self.image.img is not None: + classes = util.update_classes( + classes, + ["thumbnail-image", "card-img"], + self.image.img.classes, + ) return classes @@ -267,11 +279,21 @@ def hydrate_image( mode = self.resolve_mode(mode) classes = self.create_classes_image(mode=mode) - tag = "iconify-icon" if mode != "bootstrap" else "i" + if "mode" == "img": + if self.image.img is None: + raise ValueError - attrs = "" - if mode == "iconify": + tag = "img" + attrs = f"loading='lazy' src='{self.image.img.url}'" + + # + # return pf.RawBlock(f"") + elif mode == "iconify": + tag = "iconify-icon" attrs = f"icon={self.image.iconify.set_}:{self.image.iconify.name}" + else: + tag = "i" + attrs = "" raw = f"<{tag} {attrs} {classes}>" el = (pf.RawInline if inline else pf.RawBlock)(raw, format="html") @@ -502,7 +524,7 @@ class ConfigFloatyContainer(util.BaseConfig): attributes_cards: util.FieldAttributes - @pydantic.computed_field# type: ignore[prop-decorator] + @pydantic.computed_field # type: ignore[prop-decorator] @property def classes_always(self) -> list[str]: return ["floaty", f"floaty-size-{self.size}"] @@ -668,7 +690,7 @@ class BaseFloatyConfig(util.BaseConfig): filter_name: ClassVar[str] - @pydantic.computed_field# type: ignore[prop-decorator] + @pydantic.computed_field # type: ignore[prop-decorator] @property def overlay_identifiers(self) -> dict[str, str] | None: if (attr := getattr(self, self.filter_name, None)) is None: diff --git a/acederbergio/filters/links.py b/acederbergio/filters/links.py index 3fb8674..cf9b41d 100644 --- a/acederbergio/filters/links.py +++ b/acederbergio/filters/links.py @@ -26,6 +26,7 @@ def hydrate_tex(self) -> pf.Inline: class ConfigLinksContainer(floaty.ConfigFloatyContainer): + include_href: Annotated[bool, pydantic.Field(default=True)] @pydantic.computed_field # type: ignore[prop-decorator] @property diff --git a/acederbergio/filters/mermaid.py b/acederbergio/filters/mermaid.py new file mode 100644 index 0000000..2d4b6c8 --- /dev/null +++ b/acederbergio/filters/mermaid.py @@ -0,0 +1,60 @@ +"""Automate the rendering of certain mermaid daigrams. + +While this can be done in quarto already, it is a pain and does not work in +a way I like. +""" + +import subprocess +from typing import Annotated + +import panflute as pf +import pydantic + +from acederbergio import env +from acederbergio.filters import util + +logger = env.create_logger(__name__) + + +class MermaidConfig(util.BaseConfig): + file: Annotated[str, pydantic.Field()] + output: Annotated[str, pydantic.Field(description="Output name.")] + # s3: Annotated[ + # S3AssetConfig | None, + # pydantic.Field(None, description="S3 Bucket Configuration"), + # ] + + def render(self): + subprocess.run( + ["mmdc", "-i", self.file, "-o", self.output], + capture_output=True, + text=True, + check=True, + ) + + +class Config(pydantic.BaseModel): + + mermaid_export: Annotated[ + list[MermaidConfig] | None, + pydantic.Field(None), + ] + + +class FilterMermaidExport(util.BaseFilterHasConfig): + filter_name = "mermaid_export" + filter_config_cls = Config + + def __call__(self, elem: pf.Element): + return elem + + def action(self, element: pf.Element, doc: pf.Doc): + + if self.config is None: + return + + for item in self.config.mermaid_export: + item.render() + + +filter = FilterMermaidExport.createFilter() diff --git a/acederbergio/filters/s3.py b/acederbergio/filters/s3.py new file mode 100644 index 0000000..0c9785d --- /dev/null +++ b/acederbergio/filters/s3.py @@ -0,0 +1,7 @@ +from acederbergio.filters import util + + +class S3AssetConfig(util.BaseHasIdentifier): + source_url: str | None + source_path: str | None + path: str diff --git a/acederbergio/util.py b/acederbergio/util.py index a3e86fe..d61c4e7 100644 --- a/acederbergio/util.py +++ b/acederbergio/util.py @@ -1,17 +1,22 @@ +import contextlib +import functools import json import logging import logging.handlers import queue from datetime import datetime -from typing import Annotated, Any, Mapping +from typing import Annotated, Any, Awaitable, Mapping, ParamSpec, TypeVar +import httpx import pandas import pydantic import rich import rich.console import rich.syntax import rich.table +import typer import yaml +from plum import Callable CONSOLE = rich.console.Console() @@ -25,6 +30,59 @@ def print_error(err: pydantic.ValidationError, **kwargs): ) +def print_httpx(thing: httpx.Request | httpx.Response, **kwargs): + + if isinstance(thing, httpx.Request): + print_yaml( + { + "url": str(thing.url), + "method": thing.method, + "headers": thing.headers, + "data": thing.read().decode(), + }, + **kwargs, + ) + else: + try: + data = thing.json() + except json.JSONDecodeError: + data = thing.text + + print(data) + print_yaml( + {"url": str(thing.url), "data": data, "status": thing.status_code}, + **kwargs, + ) + + +@contextlib.contextmanager +def catch_httpx(): + try: + yield + except httpx.HTTPStatusError as err: + print_httpx( + err.response, + rule_title="Bad Response Code", + rule_kwargs=dict(style="red", characters="="), + ) + CONSOLE.rule(style="red", characters="-") + raise typer.Exit(1) + + +P_CatchesHTTPX = ParamSpec("P_CatchesHTTPX") +T_CatchesHTTPX = TypeVar("T_CatchesHTTPX") + + +def catches_httpx(method: Callable[P_CatchesHTTPX, Awaitable[T_CatchesHTTPX]]): + + @functools.wraps(method) + async def wrapped(*args: P_CatchesHTTPX.args, **kwargs: P_CatchesHTTPX.kwargs): + with catch_httpx(): + return await method(*args, **kwargs) + + return wrapped + + class MagicEncoder(json.JSONEncoder): kwargs_model_dump: dict[str, Any] diff --git a/acederbergio/verify.py b/acederbergio/verify.py index 7a5db99..cd66a9c 100644 --- a/acederbergio/verify.py +++ b/acederbergio/verify.py @@ -319,7 +319,7 @@ def aggr_linkedlist( q = [match, lookup, fix_depth] if depth is not None: - q.append({"$limit": depth}) + q.append({"$limit": depth}) # type: ignore return q diff --git a/blog/_quarto.yaml b/blog/_quarto.yaml index 320f1cd..e135e08 100644 --- a/blog/_quarto.yaml +++ b/blog/_quarto.yaml @@ -73,47 +73,6 @@ website: description: acederberg's blog. repo-url: https://github.com/acederberg/quarto-maths sidebar: - - id: components - border: true - title: Components and Filters - style: "docked" - contents: - - section: IFrames - contents: - - text: Demo - href: ./components/iframe/index.qmd - - text: "Docs: Pandoc Filter" - href: "./projects/blog/quartodoc/iframe.qmd" - - section: Overlay - contents: - - text: Demo - href: ./components/overlay/index.qmd - - text: "Docs: Pandoc Filter" - href: "./projects/blog/quartodoc/overlay.qmd" - - text: "Docs: Javascript" - href: "./projects/blog/typedoc/overlay.qmd" - - section: Floaty - contents: - - text: "Demo: Overview" - href: ./components/floaty/index.qmd - - text: "Demo: Skills" - href: ./components/floaty/skills.qmd - - text: "Demo: Contacts" - href: ./components/floaty/contacts.qmd - - text: "Demo: Links" - href: ./components/floaty/links.qmd - - text: "Demo: Under Construction" - href: ./components/floaty/under-construction.qmd - - text: "Docs: Pandoc Filter" - href: "./projects/blog/quartodoc/floaty.qmd" - - text: "Docs: Javascript" - href: "./projects/blog/typedoc/floaty.qmd" - - section: Resume - contents: - - text: Demo - href: ./components/resume/index.qmd - - text: "Docs: Pandoc Filter" - href: "./projects/blog/quartodoc/resume.qmd" - id: projects title: Projects style: "docked" @@ -145,6 +104,45 @@ website: - text: Static Quarto Websites in Kubernetes href: ./posts/quarto-kube-static/index.qmd + - section: Components and Filters + contents: + - section: IFrames + contents: + - text: Demo + href: ./components/iframe/index.qmd + - text: "Docs: Pandoc Filter" + href: "./projects/blog/quartodoc/iframe.qmd" + - section: Overlay + contents: + - text: Demo + href: ./components/overlay/index.qmd + - text: "Docs: Pandoc Filter" + href: "./projects/blog/quartodoc/overlay.qmd" + - text: "Docs: Javascript" + href: "./projects/blog/typedoc/overlay.qmd" + - section: Floaty + contents: + - text: "Demo: Overview" + href: ./components/floaty/index.qmd + - text: "Demo: Skills" + href: ./components/floaty/skills.qmd + - text: "Demo: Contacts" + href: ./components/floaty/contacts.qmd + - text: "Demo: Links" + href: ./components/floaty/links.qmd + - text: "Demo: Under Construction" + href: ./components/floaty/under-construction.qmd + - text: "Docs: Pandoc Filter" + href: "./projects/blog/quartodoc/floaty.qmd" + - text: "Docs: Javascript" + href: "./projects/blog/typedoc/floaty.qmd" + - section: Resume + contents: + - text: Demo + href: ./components/resume/index.qmd + - text: "Docs: Pandoc Filter" + href: "./projects/blog/quartodoc/resume.qmd" + - section: Nvim Configuration contents: - title: Why Even Use Neovim? @@ -198,8 +196,14 @@ theme: - themes/index.scss - themes/overlay.scss - themes/resume.scss + - themes/glow.scss + - themes/landing-page.scss format: html: + # NOTE: Mermaid formatting does not play nice in the container. + # Just use mermaid CLI to make SVGs for thumbnails etc + # # https://quarto.org/docs/authoring/diagrams.html#mermaid-formats + # mermaid-format: svg layout: full-page code-fold: false embed-resources: false diff --git a/blog/daimond.svg b/blog/daimond.svg new file mode 100644 index 0000000..43d2135 --- /dev/null +++ b/blog/daimond.svg @@ -0,0 +1 @@ + diff --git a/blog/dev/plan.qmd b/blog/dev/plan.qmd index 602f0ff..0aa0391 100644 --- a/blog/dev/plan.qmd +++ b/blog/dev/plan.qmd @@ -8,6 +8,8 @@ toc: false tbl-colwidths: [25, 15, 60] --- +# For Development + ## The Big Picture A few of the goals I have here are @@ -177,7 +179,16 @@ asyncio.run(main()) ::: -## Todo +# Build Enhancements + +Docker builds are so slow it is painful. +For instance, it took [this build](https://github.com/acederberg/quarto-maths/actions/runs/13208017187/job/36875687217) +about 15 minutes to finish building the static site, which is horrific. +Part of the problem is that builds have to +I would like to implement some build caching for production that could help +reduce build time. + +# Todo ::: { #tbl-todo-handler } diff --git a/blog/dev/todo.qmd b/blog/dev/todo.qmd index 3be9e24..c28059b 100644 --- a/blog/dev/todo.qmd +++ b/blog/dev/todo.qmd @@ -159,6 +159,17 @@ There are some things that must be handled in general. : Objectives Quarter 1, 2025 { .todo-table } +| Item | Completed | Description | +| ---------------------------------------------- | --------- | --------------------------------------------------------------------------------------------------------------------------------------------------- | +| Image assets and s3 bucket | 1/9/2025 | It is bad practice to keep images in git. | +| Host site in s3 bucket? | | Considering this idea to save on hosting costs. Could also render quarto documents to markdown and themes separately and that might speed up builds | +| Pretty landing page | | Currently the landing page design is lacking. | +| Resume link on HTML Resume is broken | 1/13/2025 | | +| Make readme pretty | 1/12/2025 | | +| Make all projects page pretty or prune. | | | +| `preview` site should not include `robots.txt` | | Because it is a preview site an things may or may not work as intended. | +| `NVIM` Coniguration subproject is broken | | | + ::: ### Quarto Platform? diff --git a/blog/filters/mermaid.py b/blog/filters/mermaid.py new file mode 100644 index 0000000..7493f26 --- /dev/null +++ b/blog/filters/mermaid.py @@ -0,0 +1,4 @@ +from acederbergio.filters import mermaid + +if __name__ == "__main__": + mermaid.filter() diff --git a/blog/glow.qmd b/blog/glow.qmd new file mode 100644 index 0000000..fa2a6fa --- /dev/null +++ b/blog/glow.qmd @@ -0,0 +1,261 @@ +--- +format: + html: + navbar: false + page-layout: custom +--- + +````{=html} + + +
+
+
+

This is a test.

+
+
+
+ + +
+
+
+

This is a test.

+
+
+
+ +
+
+
+
+
+
+

+ Lorem ipsum odor amet, consectetuer adipiscing elit. Vel bibendum eu nulla + montes lacinia. Egestas fusce mollis justo magnis turpis vehicula. Fermentum + fusce iaculis rhoncus curabitur elementum nec; fusce sem morbi. Lacinia + convallis hac litora est laoreet laoreet viverra. Nam vitae commodo suspendisse + volutpat nibh cursus porta mattis. Justo potenti sociosqu erat vitae non. +

+
+
+
+
+
+
+ + +
+
+
+
+
+
+

+ Lorem ipsum odor amet, consectetuer adipiscing elit. Vel bibendum eu nulla + montes lacinia. Egestas fusce mollis justo magnis turpis vehicula. Fermentum + fusce iaculis rhoncus curabitur elementum nec; fusce sem morbi. Lacinia + convallis hac litora est laoreet laoreet viverra. Nam vitae commodo suspendisse + volutpat nibh cursus porta mattis. Justo potenti sociosqu erat vitae non. +

+
+
+
+
+
+
+ + + +```{=html} +
+
+
+
+
+
+

+ Lorem ipsum odor amet, consectetuer adipiscing elit. Vel bibendum eu nulla + montes lacinia. Egestas fusce mollis justo magnis turpis vehicula. Fermentum + fusce iaculis rhoncus curabitur elementum nec; fusce sem morbi. Lacinia + convallis hac litora est laoreet laoreet viverra. Nam vitae commodo suspendisse + volutpat nibh cursus porta mattis. Justo potenti sociosqu erat vitae non. +

+
+
+
+
+
+
+```` + +``` + + + +``` diff --git a/blog/grid.svg b/blog/grid.svg new file mode 100644 index 0000000..c8c280a --- /dev/null +++ b/blog/grid.svg @@ -0,0 +1 @@ + diff --git a/blog/index.qmd b/blog/index.qmd index af2b9a6..c6103b9 100644 --- a/blog/index.qmd +++ b/blog/index.qmd @@ -1,88 +1,232 @@ --- +# title: Landing Page. image: https://avatars.githubusercontent.com/u/77076023?v=4 -about: - template: jolla - links: - - icon: github - text: Github - href: https://github.com/acederberg - - icon: linkedin - text: LinkedIn - href: https://www.linkedin.com/in/adrian-cederberg-b453571b9/ - - icon: twitter - text: Twitter - href: https://x.com/_acederberg +format: + html: + navbar: false + page-layout: custom aliases: - /home extra: image: https://avatars.githubusercontent.com/u/77076023?v=4 url: / +filters: + - ./filters/links.py +links: + - identifier: floaty-resume-links + container: + mode: bootstrap + include_tooltips: true + include_titles: true + resize: + xxl: 2 + xl: 2 + lg: 2 + md: 2 + sm: 2 + xs: 2 + classes_cards: + - px-5 + content: + - key: resume-pdf + title: PDF Resume + href: /resume/resume.pdf + tooltip: Most recent version of my resume in ``PDF`` format. + label: Resume + image: + bootstrap: + name: file-pdf + classes: + - text-red + + - key: resume-site + title: HTML Resume + href: /resume/index.html + tooltip: Most recent version of my resume in ``PDF`` format. + label: Resume + image: + bootstrap: + name: filetype-html + classes: + - text-blue + +# - identifier: landing-page-posts-listing +# container: {} +# contents: +# - title: On Effectively Writing Neovim Queries +# key: neovim-queries-demo +# href: /posts/neovim-queries-case-study +# listing: +# img: ... listing: - # - id: links - # fields: - # - title - # type: grid - # image-height: 128px; - # contents: - # - ./resume.qmd - # - ./about.qmd - # - ./projects.qmd - - id: categories + - id: landing-page-posts-listing + type: grid fields: - title - date - image - - author - type: grid - image-height: 256px sort: - date desc + image-height: 320px; contents: - - ./posts/index.qmd + - ./posts/**/index.qmd - ./dsa/leetcode/index.qmd - - ./kaggle/index.qmd - - ./projects/index.qmd - - id: posts + - ./kaggle/melbourne-housing-data/index.qmd + - id: landing-page-projects-listing + type: grid fields: - title - date - image - - author - type: grid - image-height: 256px sort: - date desc + image-height: 320px; contents: - - ./posts/logistic - - ./posts/python-animation - - ./posts/quarto-kube-static - - ./posts/include-code-files -date-updated: 10-01-2024 + - ./projects/blog/index.qmd + - ./components/floaty/index.qmd + - ./components/overlay/index.qmd + - ./projects/nvim-config/index.qmd + - ./projects/automation/index.qmd --- -:::{#jolla} -I am Adrian Cederberg and this is my blog powered by [quarto](https://quarto.org). -I have a Bachelors of Science in Applied Mathematics from the University of New Mexico and a wide range of experience including teaching, research, and software development. -My technical interests include mathematics, physics, and software. -Lately I am interested in writing software as I have found it to be an indispensable skill in the various topics which interest me. +```{=html} + +``` + +:::: { #landing-page } + +```{=html} +
+
+
+
+
+
+ + + GitHub + +
+
+ + + Resume + +
+
+ + + LinkedIn + +
+
+
+
+
+ + +``` + +::: { #landing-page-about } +::: { #landing-page-about-content } + +# About { #about } + +This is a blog where I post about my technical interests and contribute articles +on topics that I find worthwhile. +I am interested in writing software as I have found it to be an indispensable +skill in the various topics which interest me. Blog posts will vary in subject matter, but invariably pertain to topics in computer science. -Some things I will write about are `python`, data structures and algorithms, containerization, infrastructure as code, numerical mathematics, and data science. + +## My Background + +I have a Bachelors of Science in Applied Mathematics from the University of New +Mexico and a wide range of experience including work in teaching mathematics, +research in physics, and software development. + +Currently I am a part time caretaker. + For inquiries, please reach out to me at `adrn.cederberg123@gmail.com` or `@_acederberg` on twitter. + +## Where is the Old Blog? + +This site deprecates my previous blog, for which I made the [captura-text](https://github.com/acederberg/captura-text) plugin. +The content on the deprecated site can be found in [another repo](https://github.com/acederberg/captura-text-portfolio-assets). + +Go to (posts)[#posts]. + +## Reporting Issues + If you find any errors in my blog posts, please make an issue on [the github repository for this website](https://github.com/acederberg/quarto-maths). + +::: + ::: -## Categories +::: { #landing-page-posts } + +# Posts { #landing-page-posts-content .pb-5 } + +::: {#landing-page-posts-listing} + +::: -:::{#categories} ::: -## Posts +::: { #landing-page-projects } + +# Projects { #landing-page-projects-content .pb-5 } + +::: { #landing-page-projects-listing } -:::{#posts} ::: -## Where is the Old Blog? +::: -This site deprecates my previous blog, for which I made the [captura-text](https://github.com/acederberg/captura-text) plugin. -The content on the deprecated site can be found in [another repo](https://github.com/acederberg/captura-text-portfolio-assets). +::: { #landing-page-resume } + +# Resume { #landing-page-resume .pb-5 } + +::: { #floaty-resume-links .px-5 } + +::: + +::: + +:::: diff --git a/blog/js/asciiart.js b/blog/js/asciiart.js new file mode 100644 index 0000000..1a348f5 --- /dev/null +++ b/blog/js/asciiart.js @@ -0,0 +1,501 @@ +// @ts-check +/** @module + * + * Used to put raw ascii art into divs and ensure that the grid is properly + * set. + * + * Thank you to https://patorjk.com/software/taag + */ + +/** @typedef {object} T_AsciiCharacterOptions + * + * @property {boolean} linesKeepEmpty - Keep empty lines. + * @property {number} whitespaceSize - Ammount of (hopefull) front whitespace characters to strip from front. + * @property {number} whitespaceKeep - Strip front whitespace or not? + * @property {number} whitespaceSizeAppend - Number of whitespace to put at the end of each line. + * + */ + +/** @typedef {object} T_AsciiCharacterStringItem + * + * @property {Partial} options? - Options for parsing a character. + * @property {string} character - Text for the character. + * + */ + +/** + * @typedef {object} T_AsciiCharacterStringOptions + * + * @property {HTMLElement} elem? + * @property {Partial} charOptions? - Default options. + * + */ + + +/** @param {string[]} lines + * @returns {number} + */ +function getWhiteSpace(lines) { + const reWhitespace = /^(? *)/ + const whitespaceSizes = lines.map( + line => line.match(reWhitespace)?.groups?.whitespace.length || 0 + ) + // console.log("whitespaceSizes", whitespaceSizes) + return Math.min(...whitespaceSizes.filter(count => count > 0)) +} + +/** @param {string} char - Ascii art character as a string. This might come + * with some preceeding white space, which should be stripped. This is because + * often this input will be written in a backticks string which will be + * indented propertly. + * @param {Partial} options + * @returns {HTMLSpanElement} + */ +export function AsciiCharacter(char, { linesKeepEmpty, whitespaceSize, whitespaceKeep, whitespaceSizeAppend } = {}) { + const asciiText = char + let asciiLines = asciiText.split("\n") + + // Remove preceeding whitespace. Filter out empty lines. + if (!whitespaceKeep) { + whitespaceSize = whitespaceSize || getWhiteSpace(asciiLines) + asciiLines = asciiLines.map(line => line.slice(whitespaceSize)) + } + + if (linesKeepEmpty) asciiLines = asciiLines.filter(line => line.length > 0) + + const asciiCols = Math.max(...asciiLines.map(item => item.length)) + (whitespaceSizeAppend || 0) + const elemOut = document.createElement("span") + elemOut.classList.add("ascii-art-letter") + elemOut.style.gridTemplateColumns = `repeat(${asciiCols}, 1ch)` + + + asciiLines.forEach(line => { + line = line.padEnd(asciiCols, " ") + line.split("").forEach((char) => { + const charDiv = document.createElement("span"); + charDiv.textContent = char === " " ? "\u00A0" : char; // Preserve spaces + elemOut.appendChild(charDiv); + }) + }) + + return elemOut +} + +/** + * @param {Array} items + * @param {Partial} options + */ +export function AsciiCharacterString(items, options = {}) { + + let elem = options.elem + if (!elem) { + elem = document.createElement("span") + elem.classList.add("ascii-art") + } + + const characters = items.map(item => { + const char = ( + typeof (item) == 'string' + ? AsciiCharacter(item, options.charOptions) + : AsciiCharacter(item.character, item.options || options) + ) + elem.appendChild(char) + return char + }) + + return { characters, elem } +} + + +export function forLandingPage() { + const landingPageBannerTitle = document.getElementById("acederberg-io") + if (!landingPageBannerTitle) throw Error("Could not find `acederberg-io`.") + + /** @returns {Partial} */ + const create_opts = () => { + const elem = document.createElement("span") + elem.classList.add("ascii-flex") + return { charOptions: { whitespaceSizeAppend: 1 }, elem: elem } + } + + /** @type {T_AsciiCharacterStringItem} */ + const langleFinal = { character: langle, options: { whitespaceSizeAppend: 8 } } + + const langles = AsciiCharacterString([langleFinal]) + langles.elem.classList.add("ascii-art-green") + + // Primary Grouping. + const AA = AsciiCharacterString([A], create_opts()) + AA.elem.classList.add("ascii-art-teal") + + const CED = AsciiCharacterString([C, E, D, E, R], create_opts()) + const ERB = AsciiCharacterString([B], create_opts()) + const ERG = AsciiCharacterString([E, R, G], create_opts()) + + CED.elem.classList.add("ascii-art-yellow") + ERB.elem.classList.add("ascii-art-yellow") + ERG.elem.classList.add("ascii-art-yellow") + + const IO = AsciiCharacterString([dot, I, O,], create_opts()) + IO.elem.classList.add("ascii-art-red") + + const _ = AsciiCharacterString([underscore], create_opts()) + _.elem.classList.add("ascii-art-blinks", "ascii-art-green") + + // Secondary Grouping. + const row_1 = document.createElement("span") + row_1.classList.add("ascii-flex") + row_1.appendChild(AA.elem) + row_1.appendChild(CED.elem) + + + const row_2 = document.createElement("span") + row_2.classList.add("ascii-flex") + row_2.appendChild(ERB.elem) + row_2.appendChild(ERG.elem) + + const row_3 = document.createElement("span") + row_3.classList.add("ascii-flex") + row_3.appendChild(IO.elem) + row_3.appendChild(_.elem) + + + // Tertiary Grouping. + const right = document.createElement("span") + right.classList.add("ascii-art") + right.id = "landing-page-banner-title-right" + right.appendChild(row_1) + right.appendChild(row_2) + right.appendChild(row_3) + + landingPageBannerTitle.replaceChildren(right) + + // const left = document.getElementById("landing-page-banner-title-left") + // const leftContent = document.createElement("span") + // leftContent.classList.add("assii-art") + // leftContent.id = "landing-page-banner-title-left" + // leftContent.appendChild(langles.elem) + // left?.appendChild(leftContent) + // + + /* + /// Posts + const posts = document.getElementById("landing-page-navigation-posts") + if (!posts) throw new Error() + + const POSTS = AsciiCharacterString([B, L, O, G, underscore, P, O, S, T, S]) + posts.replaceChildren(POSTS.elem) + + /// Projects + const projects = document.getElementById("landing-page-navigation-projects") + if (!projects) throw new Error() + + const PROJECTS = AsciiCharacterString([P, R, O, J, E, C, T, S]) + projects.replaceChildren(PROJECTS.elem) + + + const resume = document.getElementById("landing-page-navigation-resume") + if (!resume) throw new Error() + + const RESUME = AsciiCharacterString([R, E, S, U, M, E]) + resume.replaceChildren(RESUME.elem) + */ + +} + + +export const dot = ` + + + + + + + $$\\ + \\__|` + +export const A = ` + $$$$$$\\ + $$ __$$\\ + $$ / $$ | + $$$$$$$$ | + $$ __$$ | + $$ | $$ | + $$ | $$ | + \\__| \\__|` +export const B = ` + $$$$$$$\\ + $$ __$$\\ + $$ | $$ | + $$$$$$$\\ | + $$ __$$\\ + $$ | $$ | + $$$$$$$ | + \\_______/` + +export const C = ` + $$$$$$\\ + $$ __$$\\ + $$ / \\__| + $$ | + $$ | + $$ | $$\\ + \\$$$$$$ | + \\______/` + +export const D = ` + $$$$$$$\\ + $$ __$$\\ + $$ | $$ | + $$ | $$ | + $$ | $$ | + $$ | $$ | + $$$$$$$ | + \\_______/` + +export const E = ` + $$$$$$$$\\ + $$ _____| + $$ | + $$$$$\\ + $$ __| + $$ | + $$$$$$$$\\ + \\________|` + +export const F = ` + $$$$$$$$\\ + $$ _____| + $$ | + $$$$$\\ + $$ __| + $$ | + $$ | + \\__|` + +export const G = ` + $$$$$$\\ + $$ __$$\\ + $$ / \\__| + $$ |$$$$\\ + $$ |\\_$$ | + $$ | $$ | + \\$$$$$$ | + \\______/` + +export const H = ` + $$\\ $$\\ + $$ | $$ | + $$ | $$ | + $$$$$$$$ | + $$ __$$ | + $$ | $$ | + $$ | $$ | + \\__| \\__|` + +export const I = ` + $$$$$$\\ + \\_$$ _| + $$ | + $$ | + $$ | + $$ | + $$$$$$\\ + \\______|` + +export const J = ` + $$$$$\\ + \\__$$ | + $$ | + $$ | + $$\\ $$ | + $$ | $$ | + \\$$$$$$ | + \\______/` + +export const K = ` + $$\\ $$\\ + $$ | $$ | + $$ |$$ / + $$$$$ / + $$ $$< + $$ |\\$$\\ + $$ | \\$$\\ + \\__| \\__|` + + +export const L = ` + $$\\ + $$ | + $$ | + $$ | + $$ | + $$ | + $$$$$$$$\\ + \\________|` + +export const M = ` + $$\\ $$\\ + $$$\\ $$$ | + $$$$\\ $$$$ | + $$\\$$\\$$ $$ | + $$ \\$$$ $$ | + $$ |\\$ /$$ | + $$ | \\_/ $$ | + \\__| \\__|` + +export const N = ` + $$\\ $$\\ + $$$\\ $$ | + $$$$\\ $$ | + $$ $$\\$$ | + $$ \\$$$$ | + $$ |\\$$$ | + $$ | \\$$ | + \\__| \\__|` + +export const O = ` + $$$$$$\\ + $$ __$$\\ + $$ / $$ | + $$ | $$ | + $$ | $$ | + $$ | $$ | + $$$$$$ | + \\______/` + +export const P = ` + $$$$$$$\\ + $$ __$$\\ + $$ | $$ | + $$$$$$$ | + $$ ____/ + $$ | + $$ | + \\__|` + +export const Q = ` + $$$$$$\\ + $$ __$$\\ + $$ / $$ | + $$ | $$ | + $$ | $$ | + $$ $$\\$$ | + \\$$$$$$ / + \\___$$$\\ + \\___|` + +export const R = ` + $$$$$$$\\ + $$ __$$\\ + $$ | $$ | + $$$$$$$ | + $$ __$$< + $$ | $$ | + $$ | $$ | + \\__| \\__|` + +export const S = ` + $$$$$$\\ + $$ __$$\\ + $$ / \\__| + \\$$$$$$\\ + \\____$$\\ + $$\\ $$ | + \\$$$$$$ | + \\______/` + +export const T = ` + $$$$$$$$\\ + \\__$$ __| + $$ | + $$ | + $$ | + $$ | + $$ | + \\__|` + +export const U = ` + $$\\ $$\\ + $$ | $$ | + $$ | $$ | + $$ | $$ | + $$ | $$ | + $$ | $$ | + \\$$$$$$ | + \\______/` + +export const V = ` + $$\\ $$\\ + $$ | $$ | + $$ | $$ | + \\$$\\ $$ | + \\$$\\$$ / + \\$$$ / + \\$ / + \\_/` + +export const W = ` + $$\\ $$\\ + $$ | $\\ $$ | + $$ |$$$\\ $$ | + $$ $$ $$\\$$ | + $$$$ _$$$$ | + $$$ / \\$$$ | + $$ / \\$$ | + \\__/ \\__|` + +export const X = ` + $$\\ $$\\ + $$ | $$ | + \\$$\\ $$ | + \\$$$$ / + $$ $$< + $$ /\\$$\\ + $$ / $$ | + \\__| \\__|` + +export const Y = ` + $$\\ $$\\ + \\$$\\ $$ | + \\$$\\ $$ / + \\$$$$ / + \\$$ / + $$ | + $$ | + \\__|` + +export const Z = ` + $$$$$$$$\\ + \\____$$ | + $$ / + $$ / + $$ / + $$ / + $$$$$$$$\\ + \\________|` + + +export const langle = ` + $$\\ + \\$$\\ + \\$$\\ + \\$$\\ + $$ | + $$ / + $$ / + \\__/` + + +export const underscore = ` + + + + + + + $$$$$$$$$$$\\ + \\___________|` + + + diff --git a/blog/posts/iconify/index.qmd b/blog/posts/iconify/index.qmd index 1ab400d..901cc2f 100644 --- a/blog/posts/iconify/index.qmd +++ b/blog/posts/iconify/index.qmd @@ -1,28 +1,124 @@ --- title: Building and Using a Custom Iconify Image Set For Mermaid -image: /icons/kubernetes.svg +image: https://bucket.acederberg.io/thumbnails/iconify.png format: html: include-in-header: - file: ../../includes/mermaid.html +keywords: + - mermaid + - kubernetes + - architecture diagram + - svg + - iconify + - icons + - icon set + - iconify icon set + - github + - api + - python + - typer +categories: + - python + - devops + - front-end +date: 2-18-2025 +date-modified: 2-18-2025 +floaty: + - identifier: banner + container: + classes: + - py-5 + - my-5 + - border-5 + - border + - rounded-5 + columns: 1 + size: 1 + content: + - title: Mermaid + key: mermaid + image: + iconify: + set: misc + name: mermaid +filters: + - ../../filters/floaty.py + - ../../filters/links.py +links: + - identifier: more + container: + mode: bootstrap + include_titles: true + include_descriptions: true + classes: + - py-5 + - floaty-hover + classes_cards: + - rounded-top-3 + - py-3 + resize: + xxl: 2 + xl: 2 + lg: 1 + md: 1 + sm: 1 + xs: 1 + content: + - title: Solution + description: Raw Code for the Solution + href: https://github.com/acederberg/quarto-maths/blob/main/acederbergio/iconify.py + key: solution + image: + bootstrap: + name: github + + - title: The Icon Set + description: Get the Icon Set + href: /icons/kubernetes.json + key: icon-set + image: + bootstrap: + name: filetype-json --- -## {{< iconify misc mermaid >}} Use Case +```{=html} + +``` + +::: { #banner } + +::: + +::: { #more } + +::: Recently I wanted to use [mermaid.js ](https://mermaid.js.org) to make an [architecture diagram](https://mermaid.js.org/syntax/architecture.html) to describe my infrastructure I am currently using to deploy [my blog](https://acederberg.io). -In particular, I wanted to use the `svg` icons defined in the [kubernetes community github repo](https://github.com/kubernetes/community/tree/master/icons/svg) +In particular, I wanted to use the `SVG` icons defined in the [`kubernetes` community `github` repo](https://github.com/kubernetes/community/tree/master/icons/svg) inside of my architecture diagram. However, I could not find a suitable icon set. To this end I made my own and would like to showcase the methods that I used. -After figuring out how to wrestle the `svg` icons into a properly formated `JSON` I was able to generate -awesome diagrams using `kubernetes` icons such as the one below: +After figuring out how to wrestle the `SVG` icons into a properly formatted `JSON` I was able to generate +awesome diagrams using `kubernetes` icons such as the one below in @fig-architecture-diagram +and icons like that seen in the header of this section (the {{< iconify misc mermaid >}} `mermaid.js` symbol). ```{mermaid} -%%| fig-cap: Daigram made with mermaid using the custom icon set. +%%| label: fig-architecture-diagram +%%| fig-cap: Diagram made with mermaid using the custom icon set. architecture-beta group kubernetes(logos:kubernetes) group ns(k8s:ns)[Blog Namespace] in kubernetes @@ -58,12 +154,9 @@ architecture-beta github_actions:R -- L:blog_gha_sa{group} ``` -and icons like that seen in the header of this section (the {{< iconify misc mermaid >}} `mermaid.js` symbol). - ## {{< iconify hugeicons question >}} Objective -The goal is to take the svg content and turn it into a string inside of some -`JSON`. This json should look something like +::: { #fig-example-json } ```json { @@ -78,28 +171,33 @@ The goal is to take the svg content and turn it into a string inside of some } ``` -Every value inside of `icons` should at least have a `body` field. +General shape of the `iconify` icon set `JSON`. + +::: + +The goal is to take the `SVG` content and turn it into a string inside of some `JSON` like that in @fig-example-json. +Every value inside of `$.icons` should at least have a `body` field containing `SVG` data. The exact `JSON` schema may be found [on iconify.design](https://iconify.design/docs/types/iconify-json.html). ::: { .callout-note } As you will see bellow, the only thing this has to with `iconify` is the `JSON` schema used by `mermaid`. -It would appear that `mermaid` does not use `iconify` under the hood and therefore icon sets that work in `mermaid` may not work with iconify {{< iconify poop >}}. +It would appear that `mermaid` does not use `iconify` under the hood and therefore icon sets that work in `mermaid` may not work with `iconify` {{< iconify poop >}}. ::: ### Gotchas -There were quite afew things that I found unintuitive while writing the script +There were a number of things that I found unintuitive while writing the script and getting the icon set to work. ::: { .callout-warning } -#### `body` Should Not be Wrapped in `svg` +#### `body` Should Not be Wrapped in `SVG` -It turns out that having the `svg` tag inside of the `body` results in the icons not loading. +It turns out that having the `SVG` tag inside of the `body` results in the icons not loading. My solution was to use `python`s built in `xml` library to parse out the -content that was only the same. In the case of the kubernetes icons I had to find +content that was only the same. In the case of the `kubernetes` icons I had to find an element `layer1` to extract from the `xml`. In `python`, this is done like @@ -119,9 +217,9 @@ of code. ::: { .callout-warning } -#### Certain SVG Icons will not Be Accepted by Iconify +#### Certain `SVG` Icons will not Be Accepted by Iconify -Some icons contain svg incompatable with iconify. +Some icons contain `SVG` incompatible with `iconify`. **However, such icons will often work with mermaid** Since I only really want these icons for `mermaid` I do not care, however, I found that certain icons (in my case `k8s:limits` make `iconify`) unable to use the whole image set. @@ -141,50 +239,107 @@ Deleting `limits` and its associated alias fix the problem and then the `k8s:nod ::: { .callout-warning } -#### All that is Necessary is a Properly Formated `JSON` File. +#### All that is Necessary is a Properly Formatted `JSON` File. -You do not need to build your own `CDN` or use the `iconify` API. +You do not need to build your own `CDN` or use the `iconify` API unless you +would like to distribute the icon set to others. ::: ## {{< iconify logos python >}} The Script After all of these considerations, I cooked up a `python` script to process all of the -`svg` icons and turn them into a nice `JSON` file. +`SVG` icons and turn them into a nice `JSON` file. -The setup is simple: +First, install the dependencies like: -- A clone of the [kubernetes community repo](https://github.com/kubernetes), -- Installing `typer` with `pip install typer`. -- Putting this script into the repo under `icons/tools/iconify.py`, +```python +pip install typer requests +``` -The first two steps can be done with the script: +and then choose from one of the two setups described below. -```sh -git clone --depth 1 https://github.com/kubernetes/community -pip install typer -``` +### Build using API Key {#setup-standalone} + +My best solution was to copy all of the files using the `pull` command instead +of cloning the entire repo as in [the alternative setup](#setup-cloned). + +1. Copy the script in @fig-script and paste it into `iconify.py`. +2. Read the instructions in the [section on the code snippet](#the-build-script) + for removing the small internal dependencies and replace them as specified. +3. Get an appropriate `github` token. This token should be very minimal as it is + included only to bypass API rate limiting by `github`. + Export the token like `export GH_TOKEN=""`. +4. Pull the raw `SVG`s from `github` using the pull command and then use the + 4 make command to build the icon set: + + ```sh + python ./iconify.py pull + python ./iconify.py make + ``` + +### Building from Cloned Repo { #setup-cloned} + +::: { .callout-warning } + +No longer recommended. See instead (the standalone setup)[#setup-standalone} + +::: + +1. Clone the [`kubernetes` community repo](https://github.com/kubernetes), + For instance + + ```bash + git clone --depth 1 https://github.com/kubernetes/community + ``` -and the final step is as easy as copying and pasting the script below: +2. Copy the build script in @fig-script into the repo under `icons/tools/iconify.py`, +3. Read the instructions in [the section on the code snippet](#the-build-script) for removing the + small internal dependencies and replace them as specified. +4. Run the build command: -```{.python include="../../../acederbergio/iconify.py"} + ```sh + python ./icons/tools/iconify.py make + ``` +### The Build Script {#the-build-script} + +```{=html} + ``` -::: {.callout-note} +::: { #fig-script .scrollable } -The `JSON` output is available [on this website](/icons/kubernetes.json). +```{ .python include="../../../acederbergio/iconify.py"} + +``` + +Script for building the `iconify` icon set. ::: -### Running the Script +To learn about the dependencies in the `acederbergio` package, see +[the github repository for this website](https://github.com/acederberg/quarto-maths). +To replace the two internal dependencies, just replace `env.require` with +`os.env["GH_TOKEN"]` and `util.print_yaml` with `print` and remove the +`acederbergio` import statements. + +Source code is available [here](https://github.com/acederberg/quarto-maths/blob/main/acederbergio/iconify.py). + +#### `typer` -Typer makes it easy to run the script with flags and subcommands. +`typer` makes it easy to run the script with flags and subcommands. -1. The `make` subcommand will create the json output. +1. The `make` subcommand will create the `JSON` output. It can limit the number of icons process using `--include` and set the output destination using `--output`. - For instance, the icon set with only the `svc`, `etcd`, and `limits` icon can be built like + For instance, in the [cloned setup](#setup-cloned) the icon set with only + the `svc`, `etcd`, and `limits` icon can be built like ```sh #| fig-cap: This assumes that the shell is currently in the root of the cloned community repo. @@ -200,16 +355,23 @@ Typer makes it easy to run the script with flags and subcommands. 2. The `names` will print all of the icon names. 3. The `aliases` command will print `$.aliases` and also has `--include`. -It might seem overkill, but this was extemely convenient while building the iconset. +It might seem overkill, but this was extremely convenient to pick out some bugs +while building the `iconset`. + +::: {.callout-note} + +The `JSON` output is available [on this website](/icons/kubernetes.json). + +::: ## {{< iconify hugeicons checkmark-circle-02 >}} Using the Icon Set in Mermaid ::: { .callout-note } -It is possible to use the icon set with iconify in pure `HTML`. +It is possible to use the icon set with `iconify` in pure `HTML`. However, for the reasons already state above, I will not be going into the details of this here. -This is decribed [within the iconify documentation](https://iconify.design/docs/icon-components/svg-framework/). -For those interested using iconify in quarto, see [the iconify extension for quarto](https://github.com/mcanouil/quarto-iconify). +This is described [within the `iconify` documentation](https://iconify.design/docs/icon-components/svg-framework/). +For those interested using `iconify` in quarto, see [the iconify extension for quarto](https://github.com/mcanouil/quarto-iconify). ::: @@ -231,7 +393,7 @@ Then write out the declarative code for your diagram inside of some `pre` tags w ### With Mermaid Inside Of Quarto It is as simple as adding something like the script tags from above to `quarto` `HTML` -output, e.g. make a file `./includes/mermaid.html` that calles `mermaid.registerIconPacks`: +output, e.g. make a file `./includes/mermaid.html` that calls `mermaid.registerIconPacks`: ```{.html include="../../includes/mermaid.html" snippet="script"} @@ -239,7 +401,7 @@ output, e.g. make a file `./includes/mermaid.html` that calles `mermaid.register and include it in the html output by using `format.html.include-in-header`: -````quarto +````{quarto} --- format: html: @@ -261,19 +423,10 @@ architecture-beta The diagram rendered should look like ```{mermaid} +%%| fig-cap: The final product. +%%| label: fig-diagram-final + architecture-beta group linode(logos:linode)[Linode] service blog_deployment(k8s:svc)[Blog Service and Deployment] in linode ``` - - diff --git a/blog/posts/include-code-files/index.qmd b/blog/posts/include-code-files/index.qmd index f9ab0c6..d7f596a 100644 --- a/blog/posts/include-code-files/index.qmd +++ b/blog/posts/include-code-files/index.qmd @@ -17,78 +17,64 @@ date: 2024-08-31 date-modified: 2024-08-31 --- - -It is possible to include code files using the [include-code-files]( https://github.com/quarto-ext/include-code-files) extension for quarto. +It is possible to include code files using the [include-code-files](https://github.com/quarto-ext/include-code-files) extension for quarto. For more on adding extensions, see [the documentation about extensions management](https://quarto.org/docs/extensions/managing.html). - ## Including Files -First, in the front matter of your quarto document, add - +First, in the front matter of your quarto document, add ```yaml filters: - include-code-files ``` - -Next, create ``example.py`` with the contents - +Next, create `example.py` with the contents ```{.python include="example.py"} -``` -and ensure that ``example.py`` works using +``` +and ensure that `example.py` works using ```sh python ./example.py ``` - To include this file in simply do: - ````quarto ```{.python include="example.py"} ``` ```` - which should render to - ```{.python include="example.py"} -``` +``` ## Running Files -``example.py`` can be run using the ``run`` jupyter magic commands like: - +`example.py` can be run using the `run` jupyter magic commands like: ```{python} %run example.py ``` - More about magic commands is available in the [jupyter documentation](https://ipython.readthedocs.io/en/stable/interactive/magics.html). -Finally, with ``main`` in the local python globals, we can execute ``main``. - +Finally, with `main` in the local python globals, we can execute `main`. ```{python} main() ``` - ## Including Snippets From Files -Often, including the whole file is not desirable and only a part of the file -should be included. For instance if the conents of ``example.py`` are modified +Often, including the whole file is not desirable and only a part of the file +should be included. For instance if the contents of `example.py` are modified to make it - ```python # start snippet main def main(): @@ -100,11 +86,9 @@ if __name__ == "__main__": main() ``` - -the following code block in quarto will only include the ``main`` function +the following code block in quarto will only include the `main` function definition. - ````quarto ```{.python include="eample.py" snippet="print"} ``` diff --git a/blog/posts/keywords/extraction-process.mmd b/blog/posts/keywords/extraction-process.mmd new file mode 100644 index 0000000..96ff5b4 --- /dev/null +++ b/blog/posts/keywords/extraction-process.mmd @@ -0,0 +1,16 @@ +graph TD + InMongoDB[("` + Check *MongoDB* for Metrics + using **SHA256** of text. + `")] + + InputText((Text is Input)) --> InMongoDB + InMongoDB -- Yes --> InMongoDBTrue[Return Stored Metrics] + InMongoDB -- No --> InMongoDBFalse[Compute New Metrics with Rake] + + InMongoDBFalse -- SHA256 Label --> MongoDBSave[Save to MongoDB] + MongoDBSave --> Output{Pydantic Model} + InMongoDBTrue --> Output + Output --> Dataframe + + diff --git a/blog/posts/keywords/index.qmd b/blog/posts/keywords/index.qmd index 63ba454..f31b07c 100644 --- a/blog/posts/keywords/index.qmd +++ b/blog/posts/keywords/index.qmd @@ -1,10 +1,30 @@ --- title: Basic Natural Language Processing in `Python` {{< iconify devicon python >}} +image: https://bucket.acederberg.io/thumbnails/keywords.jpg live: quarto: reload: true +keywords: + - python + - natural language processing + - keywords + - nltk + - hitchens + - salinger + - postman +categories: + - python + - data science filters: + - quarto - ../../filters/floaty.py + - ../../filters/mermaid.py +# mermaid_export: +# - file: ./blog/posts/keywords/extraction-process.mmd +# output: ./extraction-process.svg +# s3: +# - source_url: "https://www.theartofcalligraphy.com/wp-content/uploads/heartsutra-part1.jpg" +# path: /thumbnails/keywords.jpg floaty: - identifier: banner container: @@ -31,6 +51,8 @@ floaty: iconify: set: devicon name: python +date: 2-18-2025 +date-modified: 2-18-2025 --- ```{=html} @@ -92,7 +114,7 @@ floaty: -To overfimplify, natural lagnuage processing a set of strategies used by +To oversimplify, natural language processing is a set of strategies used by computers to interpret human language. Of course, this is just a blog post where you can follow along with my notes as I learn - this is by no means exhaustive. @@ -114,11 +136,11 @@ stemming 'description', and 'describer' all share 'descri'. tokenizing -: Tokenization is the process of turning a sentance into its component phrases, +: Tokenisation is the process of turning a sentence into its component phrases, words, or subwords. For instance, in the case of subwords 'antigravity' might become 'anti' and 'gravity'. -The following figure contains the example text to be processed in todays post: +The following figure contains the example text to be processed in today's post: ::: { #fig-quotes } @@ -268,10 +290,10 @@ text_hitchens = """ ::: -## Tokenization +## Tokenisation Since tokenizing might be done at various scales, `nltk` provides a means to -do both word and sentence tokenization. +do both word and sentence tokenisation. ```{python} # | output: false @@ -288,25 +310,25 @@ util.print_yaml(tokens_sent, rule_title="Sentence Tokens", console=console) console.save_svg("./nlp-tokens-salinger.svg") ``` -![Word and sentence tokens extracted from `@fig-quotes-salinger` using `nltk`s recommended tokenization.](./nlp-tokens-salinger.svg){ #fig-tokenization } +![Word and sentence tokens extracted from `@fig-quotes-salinger` using `nltk`s recommended tokenisation.](./nlp-tokens-salinger.svg){ #fig-tokenisation } -Tokenization is pretty obvious in english due to the use of spaces. -There are edge cases like abbreviations an elipsis in sentence tokenization -and apostrophes in word tokenization *(notice that in @fig-quotes-salinger the +Tokenisation is pretty obvious in English due to the use of spaces. +There are edge cases like abbreviations an ellipsis in sentence tokenisation +and apostrophes in word tokenisation *(notice that in @fig-quotes-salinger the word "I'd" is parsed as "I" and "'d" for instance)*. However, -in languages like Arabic, Japanese and Chinese word tokenization is not nearly as +in languages like Arabic, Japanese and Chinese word tokenisation is not nearly as straight forward due to the lack of spaces. -[![The 'Heart Sutra', written in Japanese Caligraphy. Credit: `TheArtOfCalligraphy.com`](https://www.theartofcalligraphy.com/wp-content/uploads/heartsutra-part1.jpg)](https://www.theartofcalligraphy.com/heart-sutra-in-japanese) +[![The 'Heart Sutra', written in Japanese Calligraphy. Credit: `TheArtOfCalligraphy.com`](https://www.theartofcalligraphy.com/wp-content/uploads/heartsutra-part1.jpg)](https://www.theartofcalligraphy.com/heart-sutra-in-japanese) ## Stop Words -Certain words are not worth keeping during tokenization for particular processes. +Certain words are not worth keeping during tokenisation for particular processes. For instance if one is looking for keywords, words like 'is', 'the', 'if' and -so on should not be considered during tokenization. +so on should not be considered during tokenisation. Conveniently, `nltk` provides a list of stop words. -Stop words can be used in the tokenization to enhance keyword finding: +Stop words can be used in the tokenisation to enhance keyword finding: ```{python} # | output: false @@ -321,7 +343,7 @@ util.print_yaml( console.save_svg("./nlp-tokens-salinger-filtered.svg") ``` -![Filtered token from @fig-tokenization](./nlp-tokens-salinger-filtered.svg){ #fig-tokenization-filtered } +![Filtered token from @fig-tokenisation](./nlp-tokens-salinger-filtered.svg){ #fig-tokenisation-filtered } ## RAKE @@ -343,27 +365,15 @@ For my use-case, the same document will likely show up often. For this reason, I would like to save the output dataframe to `MongoDB` to save on runtime. -```{mermaid} + +```{mermaid } %%| fig-align: center %%| fig-cap: '**Metric Generation Process**.' %%| label: fig-metric-generation -graph TD - InMongoDB[("` - Check *MongoDB* for Metrics - using **SHA256** of text. - `")] - - InputText((Text is Input)) --> InMongoDB - InMongoDB -- Yes --> InMongoDBTrue[Return Stored Metrics] - InMongoDB -- No --> InMongoDBFalse[Compute New Metrics with Rake] - - InMongoDBFalse -- SHA256 Label --> MongoDBSave[Save to MongoDB] - MongoDBSave --> Output{Pydantic Model} - InMongoDBTrue --> Output - Output --> Dataframe - +%%| file: extraction-process.mmd ``` + ::: { .callout-note collapse=true } #### `DataFrame` and `Metrics` Code diff --git a/blog/posts/keywords/sklearn.qmd b/blog/posts/keywords/sklearn.qmd index f667b06..d09262d 100644 --- a/blog/posts/keywords/sklearn.qmd +++ b/blog/posts/keywords/sklearn.qmd @@ -1,5 +1,6 @@ --- title: SKLean Text Feature Extraction Notes +draft: true --- While contemplating how to compare keywords in documents I decided to ask diff --git a/blog/posts/logistic/index.qmd b/blog/posts/logistic/index.qmd index fd21a57..1fd7de5 100644 --- a/blog/posts/logistic/index.qmd +++ b/blog/posts/logistic/index.qmd @@ -5,7 +5,7 @@ image: ./cobweb-rr-0.9.gif extra: url: /posts/logistic image: /posts/logistic/cobweb-rr-0.9.gif -keywords: +keywords: - logistic map - logistic - map @@ -24,15 +24,12 @@ date: 8-1-2024 date-modified: 2024-08-27 --- -This is my first quarto blog post! +This was my first quarto blog post that I wrote! Now I have added much more +content than there was before. -For the most part, I wanted to make this because the graphs are interesting to -look at. Further, I wanted to test the abilities of quarto to use ``latex``, -``markdown``, and ``python``. - -The logistic map was used to explain chaos occurring in simple situations in a -physics class I took back in college. This class went far deeper into the -subject matter than this blog post does at the moment, but I might come back +The logistic map was used to explain chaos occurring in simple situations in a +physics class I took back in college. This class went far deeper into the +subject matter than this blog post does at the moment, but I might come back and write more in this blog post later. For now, this will demonstrate some of the basic properties of the recurrence @@ -69,13 +66,13 @@ of the logistic sequence: ```{python} -#| echo: true -import itertools +# | echo: true import json import pathlib from os import environ -from typing import Generator, List +from typing import Generator, NamedTuple, TypedDict +from matplotlib.axes import Axes import seaborn as sns import pandas as pd import numpy as np @@ -85,8 +82,8 @@ from matplotlib.animation import FuncAnimation # NOTE: Constants. These will determine how long it will take for this document -# to render. Further, changing these documents can result in an error -# from deno with the message ``ERROR: RangeError: Maximum call stack size +# to render. Further, changing these documents can result in an error +# from deno with the message ``ERROR: RangeError: Maximum call stack size # exceeded``. LOGISTIC_X0_DEFAULT = float(environ.get("LOGISTIC_X0_DEFAULT", "0.9")) LOGISTIC_STEP_SIZE = float(environ.get("LOGISTIC_STEP_SIZE", "0.01")) @@ -95,178 +92,91 @@ LOGISTIC_ITERATIONS = int(environ.get("LOGISTIC_ITERATIONS", "1000 ")) LOGISTIC_ITERATIONS_KEPT = int(environ.get("LOGISTIC_ITERATIONS_KEPT", "100")) DIR = pathlib.Path(".").resolve() -LOGISTIC_DATA_BIFURCATION = DIR / f"logistic-bifurcation-{LOGISTIC_ITERATIONS}-{LOGISTIC_STEP_SIZE}.csv" -LOGISTIC_DATA_COBWEB_RR = DIR / f"cobweb-{LOGISTIC_STEP_SIZE}-{LOGISTIC_STEP_SIZE_RR}.json" +LOGISTIC_DATA_BIFURCATION = ( + DIR / f"logistic-bifurcation-{LOGISTIC_ITERATIONS}-{LOGISTIC_STEP_SIZE}.csv" +) +LOGISTIC_DATA_COBWEB_RR = ( + DIR / f"cobweb-{LOGISTIC_STEP_SIZE}-{LOGISTIC_STEP_SIZE_RR}.json" +) def logistic_point( - rr: float, - xx: float, - *, - power: int = 1, - _power: int = 0, + rr: float, + xx: float, + *, + power: int = 1, + _power: int = 0, ) -> float: - """Compute the value of the logistic map for some coefficient `rr` and - number `xx`. - """ + """Compute the value of the logistic map for some coefficient `rr` and + number `xx`. + """ - _power += 1 - - xx_next = rr * xx * (1 - xx) - if _power == power: - return xx_next + _power += 1 - return logistic_point(rr, xx_next, power=power, _power=_power) + xx_next = rr * xx * (1 - xx) + if _power == power: + return xx_next + return logistic_point(rr, xx_next, power=power, _power=_power) -def _logistic_array(rr: float, xx, *, power = 1): - """Helper for ``logistic_array``.""" - # NOTE: Numpy multiplies elements stepwise. +def _logistic_array(rr: float, xx, *, power=1): + """Helper for ``logistic_array``.""" - yy, _power = xx, 0 - while _power < power: - yy = rr * yy * (1 - yy) - _power = _power + 1 + # NOTE: Numpy multiplies elements stepwise. + yy, _power = xx, 0 + while _power < power: + yy = rr * yy * (1 - yy) + _power = _power + 1 - return yy + return yy def logistic_array( - rr: float, - *, - step: float = 0.001, - power: int = 1, + rr: float, + *, + step: float = 0.001, + power: int = 1, ): - """Compute the graph of the logistic map on the closed interval $[0, 1]$.""" + """Compute the graph of the logistic map on the closed interval $[0, 1]$.""" - xx = np.arange(0, 1 + step, step=step) - yy = _logistic_array(rr, xx, power=power) + xx = np.arange(0, 1 + step, step=step) + yy = _logistic_array(rr, xx, power=power) - return pd.DataFrame(dict(xx=xx, yy=yy)) + return pd.DataFrame(dict(xx=xx, yy=yy)) def logistic_point_sequence( - rr: float, - xx: float, - *, - iterations: int = LOGISTIC_ITERATIONS, + rr: float, + xx: float, + *, + iterations: int = LOGISTIC_ITERATIONS, ) -> Generator[float, None, None]: - """Iterate the logistic sequence starting at `xx` for coefficient `rr` for - `iterations` number of steps.""" - - yield xx + """Iterate the logistic sequence starting at `xx` for coefficient `rr` for + `iterations` number of steps.""" - iteration = 0 - while (iteration := iteration + 1) < iterations: - yield (xx := logistic_point(rr, xx)) + if not (0 <= xx <= 1): + raise ValueError("`xx` must be between `0` and `1`.") + yield xx -def logistic_point_attractor( - rr: float, - xx: float, - *, - iterations: int = LOGISTIC_ITERATIONS, - iterations_kept = LOGISTIC_ITERATIONS_KEPT, -) -> List[float]: - """Calculate the attractors for the logistic sequence at a point.""" + iteration = 0 + while (iteration := iteration + 1) < iterations: + yield (xx := logistic_point(rr, xx)) - seq = enumerate(logistic_point_sequence(rr, xx, iterations=iterations)) - pos_min = iterations - iterations_kept - return [value for pos, value in seq if pos >= pos_min] ``` -## Bifurcation Diagram - -Below is the bifurcation diagram for the logistic map. A bifurcation diagram -is used to show the regions of attraction for the sequence depending on `rr`. - -This graph is generated by iterating over the values of `rr` on the closed -interval `[0, 4]` and completing the following process for each `rr`: - -1. Generate a random starting point `x0` between $0$ and $1$. -2. Do a large number of iterations. -3. Choose some final number of terminating sequence elements to plot. - -```{python} -def create_bifurcation( - *, - start: float = float(2), - stop: float = float(4), - step: float = 0.05, - iterations: int = LOGISTIC_ITERATIONS, - iterations_kept: int = LOGISTIC_ITERATIONS_KEPT, -): - """Returns a ``DataFrame`` containing coefficients, attractors, and initial - conditions. - """ - - rs = np.arange(start, stop, step) - x0s = list( np.random.rand() for _ in range(len(rs))) - - return pd.DataFrame( - dict( - rr=rs, - x0=x0s, - attractors=list( - logistic_point_attractor( - rr, - x0, - iterations=iterations, - iterations_kept=iterations_kept, - ) - for rr, x0 in zip(rs, x0s) - ) - ) - ) - - -def load_bifurcation(): - """Load data if it has already been computed. This is especially useful when - developing this document.""" - - if not LOGISTIC_DATA_BIFURCATION.exists(): - data_raw = create_bifurcation(step=0.0001) - - rr = [rr for rr in data_raw["rr"] for _ in range(LOGISTIC_ITERATIONS_KEPT)] - xx =list(itertools.chain(*data_raw["attractors"]) ) - data = pd.DataFrame(dict(rr=rr, xx=xx)) - data.to_csv(LOGISTIC_DATA_BIFURCATION) - else: - data = pd.read_csv(LOGISTIC_DATA_BIFURCATION) - return data +## Visualizing Sequences - The Cobweb Daiagram - -if not (_ := DIR / "./bifurcation.png").exists(): - plot_bifurcation = sns.scatterplot(data=load_bifurcation(), x="rr", y="xx", s=0.1) - plot_bifurcation.figure.savefig(_) - plt.close() -``` - -![Logistic Bifurcation Diagram](./bifurcation.png) - - -A few well known facts about the logistic map are apparent from the figure: - -- Below a value of three, the logistic sequence actually converges -- For $r$ between $3$ and roughly $3.4$, the logistic map will have two distinct - convergent subsequences. -- For values of roughly $r=3.4$ up until roughly $3.6$ there will be four - distinct convergent subsequences. -- The bifurcation cascade blows up after approximately $r=3.6$. - -These facts can be proven by solving the recurrence relation. However doing so -is not something I want to do in this particular blog post as the algebra is -nasty and results in the solving for roots cubic equations or worse (as the -result of solving a system of polynomial equations). - - -## Cobweb Diagram +An interseting question is how to plot the logistic sequence. +This can be done by plotting the points on a line - which is pretty boring and +does not show the relationship between the points. A cobweb diagram can be used to visualize the convergence (or lack there of) of -a logistic sequence. The procedure for creating the diagram is as follows: +a logistic sequence and the relationship between the points. +The procedure for creating the diagram is as follows: 1. An initial input $x_0$ is chosen. This can be written as the point $(x_0, x_0)$ on the graph. @@ -288,7 +198,7 @@ In the most explicit form this is (\lambda^2(x_0), \lambda^3(x_0)), (\lambda^3(x_0), \lambda^3(x_0)), \\ ... \\ (\lambda^{k-1}(x_0), \lambda^{k}(x_0)), (\lambda^k(x_0), \lambda^k(x_0)), \\ - ... + ... \\ \} \end{multline} @@ -303,223 +213,595 @@ sequence, then we are just plotting \end{equation} If $\lambda_r$ is plotted along with $x \mapsto x$, the elements of the cobweb -sequence should lie on either line, alternating between them. This -visualization can be plotted using the following ``python`` code: +sequence should lie on either line, alternating between them. +The sequence of points above can be computed and visualized using the script +in @fig-cobweb-animation-script. + +::: { #fig-cobweb-animation-script } ```{python} -def iter_cobweb( - rr: float, - x0: float = LOGISTIC_X0_DEFAULT, - *, - iterations: int = LOGISTIC_ITERATIONS, -): - """Iterates the elements of the cobweb sequence.""" - iteration, xx = 0, x0 - while (iteration := iteration + 1) < iterations: - yield (xx, xx) - yield (xx, xx := logistic_point(rr, xx)) +Point = tuple[float, float] + +class Line(NamedTuple): + xx: Point + yy: Point + +class CobwebCalculator: + def __init__( + self, + iterations: int = 100, + ): + + self.iterations = iterations + + def iter_cobweb( self, rr: float, x0: float ) -> Generator[Point, None, None]: + """Iterates the elements of the cobweb sequence.""" + iteration, xx = 0.0, x0 + while (iteration := iteration + 1) < self.iterations: + yield (xx, xx) + yield (xx, xx := logistic_point(rr, xx)) + + + def iter_cobweb_segments( self, rr: float, x0: float) -> Generator[Line, None, None]: + """Iterates tuples representing the line segments making up the cobweb + diagram""" + + points = self.iter_cobweb(rr, x0) + xx, yy = zip(*points) + for xx_coords, yy_coords in zip(zip(xx[:-1], xx[1:]), zip(yy[:-1], yy[1:])): + yield Line(xx_coords, yy_coords) + + def daiagram_cobweb( + self, + rr: float, + x0: float = LOGISTIC_X0_DEFAULT, + *, + output: pathlib.Path | None = None, + interval: int = 50, + ) -> None: + """Creates the cobweb diagram animation segments for a fixed value of + `rr` and `x0`.""" + + output = output if output is not None else DIR / f"cobweb-{rr}-{x0}.gif" + if output.exists(): + return + + # Do not fear, this just uses the values from the scope below when called. + def update_cobweb(frame: int): + data_line = data_cobweb[frame] + return ax.plot(data_line.xx, data_line.yy, color="red") + + data_logistic = logistic_array(rr) + data_cobweb = list(self.iter_cobweb_segments(rr, x0)) + frames = self.iterations + + ax: Axes + fig, ax = plt.subplots() + ax.set_ylim(0, 1) + ax.set_xlim(0, 1) + ax.set_title(f"Cobweb Daiagram for `x0={x0}` and `rr={rr}`") + + # Plot the logistic map and the identity. + ax.plot(xx := data_logistic["xx"], data_logistic["yy"], color="blue") + ax.plot(xx, xx, color="green") + + # Animate cobweb. + animation = FuncAnimation(fig, update_cobweb, frames=frames, interval=interval) + if output is not None: + animation.save(output, writer="pillow") -def iter_cobweb_segments( - rr: float, - x0: float = LOGISTIC_X0_DEFAULT, - *, - iterations: int = LOGISTIC_ITERATIONS, -): - """Iterates tuples representing the line segments making up the cobweb - diagram""" - - points = iter_cobweb(rr, x0, iterations=iterations) - xx, yy = zip(*points) - for xx_coords, yy_coords in zip( - zip(xx[:-1], xx[1:]), - zip(yy[:-1], yy[1:]) - ): - yield (xx_coords, yy_coords) - - -def diagram_cobweb( - rr: float, - x0: float = LOGISTIC_X0_DEFAULT, - *, - frames: int, - interval: int = 200, -): - """Creates the cobweb diagram animation.""" - - # Do not fear, this just uses the values from the scope below when called. - def update_cobweb(frame): - line, = ax.plot( - data_cobweb[frame][0], - data_cobweb[frame][1], - color="red", +``` + +Script for drawing cobweb diagram animations with `matplotlib`. +See the output in @fig-cobwebs. + +::: + + + + + + + + +The code code in @fig-cobweb-animation-script can be used as follows: + + +```{python} +#| output: false +# Sequences that converge rapidly (quadratic convergence) +cobweb_calculator = CobwebCalculator(iterations=20) +cobweb_calculator.daiagram_cobweb(2, 0.9) +cobweb_calculator.daiagram_cobweb(1, 0.7) + +# Sequences that do not converge +cobweb_calculator = CobwebCalculator() +cobweb_calculator.daiagram_cobweb(3, 0.2) +cobweb_calculator.daiagram_cobweb(3.2, 0.4) +cobweb_calculator.daiagram_cobweb(3.8, 0.9) +cobweb_calculator.daiagram_cobweb(3.5, 0.5) +plt.close() +``` + + +::: {#fig-cobwebs layout='[[1,1,1],[1,1,1]]'} + +![Convergent subsequences.](./cobweb-3.8-0.9.gif){ #fig-cobweb-3.8-0.9} + +![Converges to a Cycle of Four.](./cobweb-3.5-0.5.gif){ #fig-cobweb-3.5-0.5 } + +![Converges to a Single Point Before Bifurcation Cascade.](./cobweb-3-0.2.gif){ #fig-cobweb-3-0.2 } + +![Converges to a Two Points After Initial Bifurcation](./cobweb-3.2-0.4.gif){ #fig-cobweb-3.2-0.4 } + + +![Fast Convergence to a Single Point.](./cobweb-2-0.9.gif){ #fig-cobweb-2-0.9 } + +![Fast Convergence to a Single Point.](./cobweb-1-0.2.gif){ #fig-cobweb-1-0.2 } + + +Cobweb diagrams for various values of $r$, generated by @fig-cobweb-animation-script. +For larger values of $r$, the cobweb diagram does not converge to a particular +point like it does for smaller $r$, however it has convergent subsequences. + +::: + + +The code in @fig-cobweb-animation-script02 will plot cobwebs varied smoothly +over $r$ on the interval $[0, 4]$. +This will show how convergence varies as the value of $r$ varies. + +::: { #fig-cobweb-animation-script02 } + +```{python} +def load_cobweb_rr(x0, path: pathlib.Path): + """Load the data if it exists already instead of generating it.""" + + if path.exists(): + with open(path, "r") as file: + raw = json.load(file) + + return {float(rr): df_raw for rr, df_raw in raw["data_cobweb"].items()}, { + float(rr): pd.DataFrame(json.loads(df_raw)) + for rr, df_raw in raw["data_logistic"].items() + } + + calculator = CobwebCalculator() + rrs = np.arange(0, 4, LOGISTIC_STEP_SIZE_RR) + data_cobweb = { + rr: list(zip(*calculator.iter_cobweb(rr, x0))) for rr in rrs + } + data_logistic = {rr: logistic_array(rr) for rr in rrs} + + with open(LOGISTIC_DATA_COBWEB_RR, "w") as file: + json.dump( + { + "data_cobweb": data_cobweb, + "data_logistic": {rr: df.to_json() for rr, df in data_logistic.items()}, + }, + file, + ) + + return (data_cobweb, data_logistic) + + +def diagram_cobweb_rr(path: pathlib.Path,interval: int = 200 ): + """Create the cobweb diagram animation for a fixed starting point and a + varied $r$.""" + + x0 = LOGISTIC_X0_DEFAULT + data_cobweb, data_logistic = load_cobweb_rr(x0, path) + + fig, ax = plt.subplots() + + rrs = np.array(sorted(data_cobweb)) + rr0 = min(rrs) + + (line_cobweb,) = ax.plot( + data_cobweb[rr0][0], + data_cobweb[rr0][1], + color="blue", + ) + (line_logistic,) = ax.plot( + data_logistic[rr0]["xx"], + data_logistic[rr0]["yy"], + color="red", ) - return line + ax.plot(xx := data_logistic[rr0]["xx"], xx, color="green") + tx = ax.text(0, 1.1, f"r = {rr0}") + def update_cobweb_rr(frame_rr): + line_cobweb.set_xdata(data_cobweb[frame_rr][0]) + line_cobweb.set_ydata(data_cobweb[frame_rr][1]) - data_logistic = logistic_array(rr) - data_cobweb = list(iter_cobweb_segments(rr, x0, iterations=frames)) + line_logistic.set_xdata(data_logistic[frame_rr]["xx"]) + line_logistic.set_ydata(data_logistic[frame_rr]["yy"]) - plt.xlim(0, 1) - plt.ylim(0, 1) - fig, ax = plt.subplots() + tx.set_text(f"r = {round(frame_rr, 2)}") - # Plot the logistic map. - ax.plot( - xx := data_logistic["xx"], - data_logistic["yy"], - color = "blue", - ) - ax.plot(xx, xx, color="green") + return (line_cobweb, line_logistic) - # Animate cobweb. - animation = FuncAnimation( - fig, - update_cobweb, - frames=frames, - interval=interval - ) + frames = list(rrs) + frames += frames[-1: 0] + animation = FuncAnimation( fig, update_cobweb_rr, frames=frames, interval=interval) + plt.close() + return animation - # Why do I have to do this twice? - plt.close() - plt.close() - return animation +if not (_ := DIR / "cobweb-rr-0.9.gif").exists(): + animation = diagram_cobweb_rr(interval=100, path=_) + animation.save(_, writer="pillow") ``` +::: -Starting with a large value we can see that sequence probably does not -converge +![Cobweb Diagram with varying $r$ values starting with $x=0.9$, generated +by @fig-cobweb-animation-script.](./cobweb-rr-0.9.gif){ #fig-cobweb-animation-02 } + + +## Attractors + +Often there will be not a single attractor, but many. +For instance, the sequence $\{\lambda^k_r(x_0)\}$ between the values of $3$ +and $3.4$ will be the union of two convergent subsequences. +For now, we can use the rough rule that for may points falling within a small +epsilon we probably have a convergent subsequence. + +::: { #fig-attractors-algo } ```{python} -if not (_ := DIR / "cobweb-3.8-0.9.gif" ).exists(): - animation = diagram_cobweb(3.8, 0.9, frames=200, interval=50) - animation.save(_, writer="pillow") + +class AttractorCalculator: + def __init__(self, + epsilon: float = 0.0001, + iterations: int = LOGISTIC_ITERATIONS, + iterations_kept: int=LOGISTIC_ITERATIONS_KEPT, + ): + + self.epsilon = epsilon + self.iterations = iterations + self.iterations_kept = iterations_kept + + def get_set( + self, + rr: float, + xx: float, + ) -> set[int]: + """ + Assumes that points `epsilon` close will make a convergent subsequence. + + Not the most rigorous, but good enough to show loci of the sequence. + """ + + attractors = set() + + index_min = self.iterations - self.iterations_kept + seq = logistic_point_sequence(rr,xx, iterations=self.iterations) + candidates = (pt for index, pt in enumerate(seq) if index > index_min) + + for elem in candidates: + + # NOTE: If no attractors, add the element. + if not attractors: + attractors.add(elem) + continue + + # NOTE: If some points are close, replace them with this point. + close = set(attr for attr in attractors if abs(elem - attr) < self.epsilon ) + if close: + attractors -= close + attractors.add(elem) + else: + attractors.add(elem) + + return attractors + + def generate_points(self, rr: float, xx:float) -> Generator[tuple[float, float, float], None, None]: + attractors = self.get_set(rr, xx) + yield from ((rr, xx, attr) for attr in attractors) + ``` +Algorithm for calculating attractors. + +::: -![Logistic Cobweb Diagram for $r = 3.8$.](./cobweb-3.8-0.9.gif) +```{python} +#| output: false + +import rich +import rich.console +import io + +def attractors_print( + rr: float, + xx: float, + # *, + # console: Console + note: str | None = None, +)-> None: + attractors = attractor_calculator.get_set(rr, xx) + console.rule(title=f"Attractors for `{rr=}` and `{xx=}`.") + if note is not None: + console.print(note) + console.print() + console.print(attractors) + +console = rich.console.Console(record=True, width=100, file=io.StringIO()) +attractor_calculator = AttractorCalculator() + +attractors_print(0, 1, note="[yellow]When `rr` is `0`, the sequence should only output `0`.") +attractors_print(2, 0.5, note="[yellow]When `rr` is `2` and `x=0.5`, the sequence is only ever `2 * 0.5 * (1 - 0.5) = 0.5`.") +attractors_print(3.2, 0.1, note="[yellow]Should have two attractors.") +attractors_print(3.5, 0.8, note="[yellow]Should have four attractors.") +console.save_svg("attractors-algo-outputs.svg") +``` -The lack of convergence for large $r$ values will also be demonstrated in the -section about the bifurcation diagram. With a smaller value of $r$ the -convergence easy to confirm visually: +![Outputs of the algorithm in @fig-attractors-algo](./attractors-algo-outputs.svg){ #fig-attractors-algo-outputs } +## Bifurcation Diagram + +In this section, we will create a **bifurcation diagram** for the logistic map. +This bifurcation diagram is used to show the **attractors** for the logistic sequence +depending on $r$. + +Since ``logistic_attractors`` can generate attractors for the logistic sequence +at a point with reasonable accuracy, it is relatively easy to generate a +dataframe that will contain points for the logistic sequence. +This is done in @fig-bifurcation-calculator. It accepts a number of chunks so +that ranges for different values of $r$ can be plotted differently (in different +resolutions or with a different number of starting points). + +::: { #fig-bifurcation-calculator } + ```{python} -if not (_ := DIR / "cobweb-2-0.9.gif" ).exists(): - animation = diagram_cobweb(2, 0.9, frames=10) - animation.save(_, writer="pillow") +import numpy.typing as npt +FloatArray = npt.NDArray[np.float64] + + +class BifurcationChunkConfig(TypedDict): + rrs: FloatArray + xxs: FloatArray + + +class BifurcationCalculator: + """ + Computes the attractors over the whole domain and put into a dataframe. + Save the dataframe to save on overhead. + + Since different regions require different resolutions and a different number + of starting points, `chunks` should be used to set render settings for each + piece of the domain. + """ + + attractor_calculator: AttractorCalculator + + def __init__(self, + chunks: list[BifurcationChunkConfig], *, + file_name: str, + attractor_calculator: AttractorCalculator | None = None, + data: pd.DataFrame | None = None, + ): + + self.file_path = DIR / file_name + self.chunks = chunks + self.attractor_calculator = attractor_calculator or AttractorCalculator() + + data_from_file = False + if self.file_path.exists() and not data: + data_from_file = True + data = pd.read_csv(self.file_path) + + self.data = data if data is not None else self.create_data() + self.data_from_file = data_from_file + + def save(self): + if self.data_from_file: + return + + self.data.to_csv(self.file_path) + + def create_data_chunk( + self, config: BifurcationChunkConfig, + ) -> pd.DataFrame: + point_data = ( + ( index, *attractor ) + for rr in config["rrs"] + for index, x_0 in enumerate(config["xxs"]) + for attractor in self.attractor_calculator.generate_points(rr, x_0) + ) + return pd.DataFrame(data=point_data, columns=["iteration_number", "rr", "x0", "attractor"]) + + + def create_data(self) -> pd.DataFrame: + chunks = (self.create_data_chunk(chunk) for chunk in self.chunks) + return pd.concat(chunks) + ``` +This code will be used to generate a number of different bifurcation diagrams +and can lazily load data from ``CSV`` files. -![Logistic Cobweb Diagram for $r = 2$.](./cobweb-2-0.9.gif) +::: +### The Bifurcation Diagram + +With the code from @fig-bifurcation-calculator we can generate a plot of the +bifurcation diagram with regions in different resolutions. As the graph +becomes more chaotic, more features can be noticed by increasing the sample +size in $r$ in each region and starting sequences for different values of +$x_0$ makes more sense since there will be a greater number of attractors. -The following code can be used to animate the sequence starting at the same -point for varying values of $r$. This will show how convergence varies as the -value of $r$ varies. ```{python} -def load_cobweb_rr(x0): - """Load the data if it exists already instead of generating it.""" - - if LOGISTIC_DATA_COBWEB_RR.exists(): - with open(LOGISTIC_DATA_COBWEB_RR, "r") as file: - raw = json.load(file) - - return { - float(rr): df_raw - for rr, df_raw in raw["data_cobweb"].items() - }, { - float(rr): pd.DataFrame(json.loads(df_raw)) - for rr, df_raw in raw["data_logistic"].items() +calc = BifurcationCalculator( + chunks=[ + { + "rrs": np.linspace(0, 3, 750), + "xxs": np.linspace(0, 1, 3), + }, + { + "rrs": np.linspace(3, 3.4, 150), + "xxs": np.linspace(0, 1, 5), + }, + { + "rrs": np.linspace(3.4, 3.6, 300), + "xxs": np.linspace(0, 1, 25), + }, + { + "rrs": np.linspace(3.6, 4, 1200), + "xxs": np.linspace(0, 1, 25) } + ], + file_name="simple.csv", +) +calc.save() - rrs = np.arange(0, 4, LOGISTIC_STEP_SIZE_RR) - data_cobweb = { - rr: list(zip(*iter_cobweb(rr, x0, iterations=len(rrs)))) - for rr in rrs - } - data_logistic = { - rr: logistic_array(rr) - for rr in rrs - } +regions = dict( + zero =calc.data.query("0 <= rr < 1"), + single = calc.data.query("1 <= rr < 3 and attractor > 0"), + double= calc.data.query("3 <= rr < 3.4 and attractor > 0"), + cascade = calc.data.query("3.4 <= rr < 3.6 and attractor > 0"), + chaos = calc.data.query("3.6 <= rr <= 4 and attractor > 0") + ) - with open(LOGISTIC_DATA_COBWEB_RR, "w") as file: - json.dump( - { - "data_cobweb": data_cobweb, - "data_logistic": { - rr: df.to_json() - for rr, df in data_logistic.items() - } - }, - file - ) - return (data_cobweb, data_logistic) +def create_bifurcation_full(): + """ + Generate the full plot. Notice that the query for an attractor greater than + zero does not require rounding. + """ + + ax_full = regions["zero"].plot.scatter(x="rr", y="attractor", s=0.1, c="blue") + regions["single"].plot.scatter(x="rr", y="attractor", s=0.1, c="blue", ax=ax_full) + regions["double"].plot.scatter(x="rr", y="attractor", s=0.01, c="purple", ax=ax_full) + regions["cascade"].plot.scatter(x="rr", y="attractor", s=0.0001, c="red", ax=ax_full) + regions["chaos"].plot.scatter(x="rr", y="attractor", s=0.00001, c="orange", ax=ax_full) + + ax_full.set_title("Logistic Map Bifurcation Daiagram - Full") + ax_full.figure.savefig("./bifurcation-full.png") + plt.close() + + +def create_bifurcation_cascade(): + """Generate the doubling cascade region.""" + ax_cascade = regions["cascade"].plot.scatter(x="rr", y="attractor", s=0.00001, c="orange") + regions["chaos"].plot.scatter(x="rr", y="attractor", s=0.00001, ax=ax_cascade, c="red") + + ax_cascade.set_title("Logistic Map Bifurcation Daiagram - Cascade") + ax_cascade.figure.savefig("./bifurcation-casade.png") + plt.close() -def diagram_cobweb_rr(interval: int = 200): - """Create the cobweb diagram animation for a fixed starting point and a - varied $r$.""" +def create_bifurcation_chaos(): + """Plot the chaotic region.""" + + ax_chaos = regions["chaos"].plot.scatter(x="rr", y="attractor", s=0.00001, c="red") + ax_chaos.set_title("Logistic Map Bifurcation Daiagram - Chaos") + + ax_chaos.figure.savefig("./bifurcation-chaos.png") + plt.close() + + +create_bifurcation_full() +create_bifurcation_cascade() +create_bifurcation_chaos() +``` - x0 = LOGISTIC_X0_DEFAULT - data_cobweb, data_logistic = load_cobweb_rr(x0) - fig, ax = plt.subplots() - rrs = np.array(sorted(data_cobweb)) - rr0 = min(rrs) +::: { #fig-bifurcation } +![The full logistic bifurcation diagram generated by `create_bifurcation_full`. +For descriptions of the color coating, see @tbl-bifurcation-keys.](./bifurcation-full.png){ #fig-bifurcation-full } - line_cobweb, = ax.plot( - data_cobweb[rr0][0], - data_cobweb[rr0][1], - color="blue", - ) - line_logistic, = ax.plot( - data_logistic[rr0]["xx"], - data_logistic[rr0]["yy"], - color="red", - ) - ax.plot(xx := data_logistic[rr0]["xx"], xx, color="green") - tx = ax.text(0, 1.1, f"r = {rr0}") +![Bifurcation diagram doubling cascade. The color coating here matches that of +@fig-bifurcation-full and is generated by `create_bifurcation_cascade`.](./bifurcation-casade.png){ #fig-bifurcation-cascade } - def update_cobweb_rr(frame_rr): - line_cobweb.set_xdata(data_cobweb[frame_rr][0]) - line_cobweb.set_ydata(data_cobweb[frame_rr][1]) +![Bifurcation diagram chaotic region. The color coating here matches that of +@fig-bifurcation-full and @fig-bifurcation-cascade.](./bifurcation-chaos.png){ #fig-bifurcation-chaos } - line_logistic.set_xdata(data_logistic[frame_rr]["xx"]) - line_logistic.set_ydata(data_logistic[frame_rr]["yy"]) - tx.set_text(f"r = {round(frame_rr, 2)}") +| Region | Color | Logistic Sequence Behavior | Number of Samples in $r$ | Number of samples in $x$ | +| ------ | ----- | --------- | ----- | ----- | +| $0 \leq r \leq 3 | Blue | Converges to zero or a single point. | 750 | 3 | +| $3 \leq r \leq 3.4 | Purple | Initial doubling. | 150 | 5 | +| $3.4 \leq r \leq 3.6 | Red | Second doubling and cascade. | 300 | 25 | +| $3.6 \leq 4 \leq 4 | Orange | Chaotic | 1200 | 25 | + +: Legend for the diagrams. { #tbl-bifurcation-keys } + +::: + + +A few well known facts about the logistic map are apparent from the bifurcation +diagrams shown in @fig-bifurcation: + +- Below a value of three, the logistic sequence actually converges +- For $r$ between $3$ and roughly $3.4$, the logistic map will have two distinct + convergent subsequences. +- For values of roughly $r=3.4$ up until roughly $3.6$ there will be four + distinct convergent subsequences. +- The bifurcation cascade blows up after approximately $r=3.6$. - return (line_cobweb, line_logistic) +These facts can be proven by solving the recurrence relation but are beyond +the scope of this article. - animation = FuncAnimation( - fig, - update_cobweb_rr, - frames=rrs, - interval=interval, - ) + +### Distribution of Attractors + +```{python} +def create_attractor_distribution(): + data = calc.data.query("rr > 3.55 and attractor > 0")[["rr", "attractor"]] + data["attractor"] = data["attractor"].round(4) + + ax = sns.histplot(data["rr"], bins=100) + ax.set_title("Distribution of Attractors In Cascade Region") + ax.figure.savefig("attractor-distribution-cascade.svg") plt.close() - return animation + + return data + +attractor_dist = create_attractor_distribution() ``` -The animation below shows cobweb diagrams with the value of $r$ varied along -$[0, 4]$. +![Distribution of attractors in the chaotic region](./attractor-distribution-cascade.png){ #fig-attractors-dist } + + + + + + + + + + + + +### Subsets of the Bifurcation Diagram +In @fig-bifurcation-chaos, there is a region where the number of attractors +becomes dramatically less. Using `BifurcationCalculator` we can generate the +high quality image of this region in @fig-bifurcation-self-similar. ```{python} -if not (_ := DIR / "cobweb-rr-0.9.gif").exists(): - animation = diagram_cobweb_rr(interval=100) - animation.save(_, writer="pillow") -``` +calc_self_similar = BifurcationCalculator([ + { + "rrs": np.linspace(3.83, 3.856, 1000), + "xxs": np.linspace(0.4, 0.6, 25), + } +], file_name="./self-similar.csv") +calc_self_similar.save() +ax_self_similar = calc_self_similar.data.query("0.4 < attractor < 0.6").plot.scatter(x="rr", y="attractor", s=0.0001) +ax_self_similar.figure.savefig("./bifurcation-self-similar.png") +plt.close() +``` -![Cobweb Diagram with varying $r$ values and $x=0.9$](./cobweb-rr-0.9.gif) +![Self similarity in the region where $3.83 \leq r \leq 3.856$](./bifurcation-self-similar.png){ #fig-bifurcation-self-similar } ## Logistic Compositions @@ -543,36 +825,33 @@ composition with itself. The following code is used to generate the subsequent diagrams: ```{python} -#| label: logistic-composition-4 -#| fig-cap: $\lambda_4^k$ for $k \in N$ and $0 < k < 7$. +# | label: logistic-composition-4 +# | fig-cap: $\lambda_4^k$ for $k \in N$ and $0 < k < 7$. + def diagram_composition(rr: float, frames: int): - """Create the composition animation for some ``rr``.""" - - def update_composition(frame): - line.set_ydata(data_composition[frame]["yy"]) - - tx.set_text(f"k = {frame}") - return (line,) - - data_composition = [logistic_array(rr, power=k + 1) for k in range(frames)] - fig, ax = plt.subplots() - - tx = ax.text(0, 1.1, "k = 0") - line, = ax.plot( - xx := data_composition[0]["xx"], - data_composition[0]["yy"], - color = "blue", - ) - ax.plot(xx, xx, color="red") - animation = FuncAnimation( - fig, - update_composition, - frames=frames - ) + """Create the composition animation for some ``rr``.""" - plt.close() - return animation + def update_composition(frame): + line.set_ydata(data_composition[frame]["yy"]) + + tx.set_text(f"k = {frame}") + return (line,) + + data_composition = [logistic_array(rr, power=k + 1) for k in range(frames)] + fig, ax = plt.subplots() + + tx = ax.text(0, 1.1, "k = 0") + (line,) = ax.plot( + xx := data_composition[0]["xx"], + data_composition[0]["yy"], + color="blue", + ) + ax.plot(xx, xx, color="red") + animation = FuncAnimation(fig, update_composition, frames=frames) + + plt.close() + return animation ``` The plot below shows $\lambda_4^k$ *(the compositions)*: @@ -581,7 +860,7 @@ The plot below shows $\lambda_4^k$ *(the compositions)*: ```{python} animation = diagram_composition(4, frames=64) if not (output_path := DIR / "composition-4.gif").exists(): - animation.save(output_path, writer="pillow") + animation.save(output_path, writer="pillow") ``` @@ -597,7 +876,7 @@ compositions have maxima and minima that are in a smaller range. ```{python} animation = diagram_composition(3, frames=9) if not (output_path := DIR / "composition-3.gif").exists(): - animation.save(output_path, writer="pillow") + animation.save(output_path, writer="pillow") ``` @@ -611,7 +890,7 @@ the degree of composition: ```{python} animation = diagram_composition(1, frames=11) if not (output_path := DIR / "composition-1.gif").exists(): - animation.save(output_path, writer="pillow") + animation.save(output_path, writer="pillow") ``` diff --git a/blog/posts/logistic/thumb.png b/blog/posts/logistic/thumb.png deleted file mode 100644 index 29aadee..0000000 Binary files a/blog/posts/logistic/thumb.png and /dev/null differ diff --git a/blog/posts/neovim-queries-case-study/index.qmd b/blog/posts/neovim-queries-case-study/index.qmd new file mode 100644 index 0000000..dc84f23 --- /dev/null +++ b/blog/posts/neovim-queries-case-study/index.qmd @@ -0,0 +1,725 @@ +--- +title: How to Write Custom Neovim Queries +subtitle: A Case-Study using Quarto +image: https://bucket.acederberg.io/thumbnails/nvim-queries-and-highlights.png +keywords: + - neovim + - lua + - syntax + - syntax highlighting + - quarto + - pandoc + - markdown + - neovim injection + - TreeSitter injection + - vim + - neovim customization +floaty: + - identifier: banner + container: + classes: + - p-3 + - my-5 + - border-white + - border-5 + - border + - rounded-5 + classes_cards: + - rounded-4 + - py-1 + classes_card_images: + - rounded-4 + - p-4 + columns: 1 + size: 1 + content: + - title: Neovim + key: neovim + image: + iconify: + set: devicon + name: neovim +links: + - identifier: more + container: + mode: bootstrap + include_titles: true + include_descriptions: true + classes: + - py-5 + - floaty-hover + classes_cards: + - rounded-top-3 + - py-3 + resize: + xxl: 2 + xl: 2 + lg: 1 + md: 1 + sm: 1 + xs: 1 + content: + - title: Github Repository + description: Repository containing this code. + href: https://github.com/acederberg/quarto-maths + key: neovim + image: + bootstrap: + name: github + + - title: More + description: More About my Neovim Configuration + href: /projects/nvim-config + key: more + image: + bootstrap: + name: code-square + +filters: + - ../../filters/floaty.py + - ../../filters/links.py +date: 2-18-2025 +date-modified: 2-18-2025 +--- + +```{=html} + +``` + +::: { #banner } + +::: + +In this blog post, I will be discussing how I added a number of highlight and +injection groups to `neovim` to improve my quality of life while authoring +`quarto` documents. [`quarto`](https://quarto.org) is a flavor of markdown for +writing computational notebooks that I use very frequently _(and in fact this +document is written in quarto)_. + +While this pertains to quarto, the principles discussed here are applicable to +any language and the development of queries and convenient means to do so are +discussed here. + +Much of the code discussed here is shared in the Github repository for my Neovim +configuration which can be found bellow: + +::: { #more } + +::: + +## Highlighting Quarto Metadata + +My first objective was highlighting quarto metadata in python documents. +Metadata comments used in quarto code blocks for `python` start with +`#|` or `# |` and should contain valid `YAML`, see for instance @fig-quarto-python-comment-example. +The end result is like that which is shown in @fig-quarto-python-comment-result. + +:::: { layout=[1,1] } + +::: { #fig-quarto-python-comment-example } + +```python +# | label: my-figure +# | fig-cap: An empty plot + +# This is a normal comment + +import matplotlib.pyplot as plt + +plt.show() +``` + +Some python code highlighted here in the browser. Notice that the metadata +comments and the normal comments are highlighted identically. + +::: + +![Quarto `python` code with metadata comments highlighted for contrast in NeoVim.](https://bucket.acederberg.io/projects/neovim-gallery/langs-quarto-metadata-highlights.png){ #fig-quarto-python-comment-result } + +:::: + +### A Trick for Writing Queries Easily + +First and for most, it is much easier to write queries by using the `:Inspect` +and `:InspectTree` commands. These allow you to peak into how TreeSitter sees the +document and decides how syntax highlighting will work. In @fig-quarto-python-comment-inspect-tree +we can see just how easy it is: + +![Looking at a comment in TreeSitter tree using `:InspectTree`. +On the left hand side the `fenced_code_block` contains some `python` code +which itself contains `comments`. See the derived query in @fig-quarto-python-comment-query. +](https://bucket.acederberg.io/projects/neovim-quarto-python-inspect-tree-comment.png){ #fig-quarto-python-comment-inspect-tree } + +This is not too difficult - all that is required is to match any comment +starting with `#|` or `# |` and label it with an appropriate capture. +The following is added to my `~/.config/nvim/queries/python/highlights.scm` +and does exactly this: + +::: { #fig-quarto-python-comment-query } + +```default +;;extends +; Cannot do injections on comments, since they have no `inner` like strings. +( + (comment) @comment.python.quarto_metadata + (#match? @comment.python.quarto_metadata "^# \\|") +) +``` + +Match comments that start with `#|` or `# |` using the `match#?` directive. +The [documentation on queries](https://neovim.io/doc/user/TreeSitter.html#_TreeSitter-syntax-highlighting) +can tell you more about what each of the various matchers and directives do. + +::: + +::: { .callout-note } + +The capture name is arbitrary (so long as it does not collide with an existing +capture). However, I named my capture `@comment.python.quarto_metadata` since +the `@comment.python` capture group already exists and these metadata comments +are a subset of that capture group. However, the name is completely up to you, +the user. + +::: + +### Using the Query + +Writing the query on its own does not tell NeoVim what to do with the capture +group - it is necessary to specify how the highlight group should be used by +providing coloration, font weight and style, and more using [`nvim_set_hl`](https://neovim.io/doc/user/api.html#nvim_set_hl) +as in @fig-neovim-quarto-python-comment-hl. + +::: { #fig-neovim-quarto-python-comment-hl } + +```lua +vim.api.nvim_set_hl(0, "@comment.python.quarto_metadata", { fg = "d3869b" }) +``` + +The highlighting rule used to make quarto metadata comments pink. +In my case, I added the line in to `~/.config/nvim/init.lua`. + +::: + +Next (after saving all of your changes), restart Neovim and move the cursor +over some code that should match the selector and use `:Inspect`. You should +see something like @fig-neovim-quarto-python-comment-inspect. After +highlighting looked like @fig-quarto-python-comment-example. + +![Confirming that the TreeSitter capture group defined about applies to `quarto` +metadata comments using `:Inspect`. Notice that the highlight group `@comment.python.quarto_metadata` +as defined in @fig-quarto-python-comment-query is now shown. +](https://bucket.acederberg.io/projects/neovim-quarto-python-inspect-comment.png){ #fig-neovim-quarto-python-comment-inspect } + +## Highlighting Quarto Fenced Divs + +![Quarto fenced divs with red highlighting](https://bucket.acederberg.io/projects/neovim-gallery/langs-quarto-in-quarto.png){ #fig-neovim-quarto-fence-result } + +Fenced div's are a fundamental piece of `pandoc` flavored markdown and `pandoc` +filters, and thus `quarto` markdown and `quarto` filters. When not highlighted, +I find it less convenient to keep track of the fences, for instance in @fig-neovim-quarto-fence-example. +However, with the fences highlighted in is much easier to make sure that all of +the fenced divs are closed. If fenced divs are not closed, some frustrating +and strange errors can arise in quarto - notice how easy it is to count the +fenced divs in @fig-neovim-quarto-fence-result. + +::: { #fig-neovim-quarto-fence-example } + +````markdown +--- +title: Listing page +listing: + - id: my-listings + type: grid + image-height: 256px + sort: + - date desc +--- + +The outer div _(below, starting with four colon marks)_ will specify some extra +padding to add around the listing and the text above it. + +:::: { .px-5 } + +Page listings will show up in the fenced div bellow: + +::: { #my-listings} + +::: + +:::: + +```default + +``` +```` + +Quarto fenced divs using to specify where to put a listing and add some +additional padding. + +::: + +By default, fenced divs come with no additional highlighting and can be quite +difficult to manage when many are nested and mixed in with text. + +![`:InspectTree` over a quarto fence.](https://bucket.acederberg.io/projects/neovim-quarto-fence-inspect-tree.png){ #fig-neovim-quarto-fence-inspect-tree } + +Using `:InspectTree` as in @fig-neovim-quarto-fence-inspect-tree, we can see that TreeSitter recognizes these fences as +`paragraph` nodes, so the query (under `~/.config/nvim/queries/markdown/highlights.scm`) will be + +::: { #fig-quarto-fence-query } + +```default +( + ( + (paragraph) @_ + (#match? @_ "^:::+ *(\\{ *.* *\\})?$") + ) + @fence.start +) + +( + ( + (paragraph) @_ + (#match? @_ "^:::+ *$") + ) + @fence.stop +) +``` + +Query to match three or more colons followed by the attributes list (anything +enclosed in curly brackets) as `@fence.start` and a line starting a sequence of +three or more colons and `@fence.stop`. Notice the similarities to the output +of `:InspectTree` in @fig-neovim-quarto-fence-inspect-tree. + +::: + +![`:Inspect` over a quarto fence.](https://bucket.acederberg.io/projects/neovim-quarto-fence-inspect.png){ #fig-neovim-quarto-fence-inspect} + +Using `:Inspect` will show that the capture was successful like @fig-neovim-quarto-fence-inspect. +Finally, Adding highlighting can be done using `vim.api.nvim_set_hl`: + +```lua +vim.api.nvim_set_hl(0, "@fence", { fg = "#dc322f", italic = true }) +``` + +## Highlighting Quarto Raw `HTML` + +![Raw `HTML` with nice syntax highlighting in `quarto`. +Since `HTML` usually contain injected highlighting for scripts and styling *(using `javascript` and `css` respectively)* the highlighting for those will occur in the `HTML` too. +Put simply, injections can also contain injections. +](https://bucket.acederberg.io/projects/neovim-gallery/langs-quarto-html.png){ #fig-quarto-html-result } + +When writing normal `HTML` blocks using markdown code blocks in `quarto` +documents I found that I was getting complete feedback from my `lsp` and +fantastic highlighting, including highlighting of injected code within the `HTML`, e.g. +highlighting and `LSP` feedback in `CSS` in `style` tags and `javascript` in `script` tags. + +I was not getting this when using raw `HTML` in `quarto` _(`HTML` code that +should be put directly into the rendered output, where catching errors in +`neovim` could save me a great deal of time)_ - +often when authoring with quarto I have found it convenient to use raw HTML +blocks like that in @fig-quarto-html-example. + +::: { #fig-quarto-html-example } + +````markdown +Some `HTML` directly in quarto: + +```{=html} +

This is some HTML that should be put directly into the quarto output.

+ +``` + +```html +

+ This HTML will be displayed directly in the quarto document as + code and not rendered in the browser. +

+``` +```` + +::: + +::: { #fig-quarto-html-inspect-tree } + +![Output of `:InspectTree` at an `HTML` code block. On the left hand side, we +can see the TreeSitter tree.](https://bucket.acederberg.io/projects/neovim-gallery/neovim-quarto-html-inspect-tree.png){ #fig-inspect-tree } + +::: + +To make this happen, I used `:InspectTree` as in @fig-inspect-tree to see which +pattern I wanted to match, and came up with the query in @fig-quarto-html-query. +In this case, it is enough to stop here. Quarto will recognize that the content +inside of `{=html}` code blocks should be highlighted as `HTML`. + +::: { #fig-quarto-html-query } + +```default +;;extends + +( + fenced_code_block + (info_string + (language) @_lang + ) + (code_fence_content) @injection.content + + (#eq? @_lang "=html") + (#set! injection.language "html" ) +) +``` + +Query for matching code fences labeled with `{=html}`. +In my case, I added this to `~/.config/nvim/queries/markdown/injections.scm`. +Notice the resemblance to @fig-quarto-html-inspect-tree. + +::: + +::: { .callout-warning } + +### Injection Capture Names + +In this case, unlike what was seen in the first section, the capture name must +be `@injection.content` since this is how `neovim` find injected content. + +::: + +## Quarto in Quarto + +Additionally, I wanted to add a background to all of `quarto` in `quarto` +blocks _(as in @fig-neovim-quarto-fence-result)_ so that they were easier to +distinguish from the rest of the markup. This is easily achieved by adding the +following to the corresponding `highlights.scm`: + +```default +( + ( + fenced_code_block + (info_string (language) @_lang) + (#eq? @_lang "quarto") + (code_fence_content) @quarto_in_quarto + ) +) +``` + +and then + +```lua +vim.api.nvim_set_hl(0, "@quarto_in_quarto", { bg = "#7c6f64", fg = "#fbf1c7" }) +``` + +to highlight the background to `~/.config/nvim/init.lua`. This will only put +a background behind the text not behind the entire code fence, and it would be +bad practice to follow the text with whitespace _(since many linters will trim it)_ +thus it makes sense to fill in the remaining background using virtual text, the +same text that is used to provide diagnostics from language server providers +and other tools. + +### Extra Fun: Extending Background Code Block Background Highlighting Using Virtual Text + +To ensure that the background highlighting was extended all the way to column +`80` (even on empty lines) I added the following `lua` to `init.lua`: + +```lua +---@alias CodeFenceHLData {language: string, start: number, stop: number, } +---@alias CodeFenceHLOptions {hl_group: string, codefence_language: string, include_delim: boolean, hl: table} + +---If a node is a fenced code block, then return the language name if it can +---be determined. +--- +---@param bufnr number - Buffer number. +---@param node TSNode -- Treesitter node +---@param options CodeFenceHLOptions +--- +---@return CodeFenceHLData? +--- +local function get_code_fence_data(bufnr, node, options) + if node:type() ~= "fenced_code_block" then + return + end + + local node_info_string = nil + local node_code_fence_content = nil + + -- NOTE: Look for the info string. + for child in node:iter_children() do + local ttt = child:type() + if ttt == "info_string" then + node_info_string = child + end + + if ttt == "code_fence_content" then + node_code_fence_content = child + end + end + + if not node_info_string then + -- vim.print("No info string for code block") + return + end + + if not node_code_fence_content then + return + end + + local node_language = nil + for child in node_info_string:iter_children() do + if child:type() == "language" then + node_language = child + end + end + + if node_language == nil then + -- print("No language for code block.") + return + end + + local row_start, col_start, _ = node_language:start() + local row_end, col_end, _ = node_language:end_() + + local lines = vim.api.nvim_buf_get_lines(bufnr, row_start, row_end + 1, false) + if not lines then + return + end + + local start, stop + if options.include_delim then + start, _, stop, _ = node:range() + else + start, _, stop, _ = node_code_fence_content:range() + end + + for _, line in ipairs(lines) do + return { language = string.sub(line, col_start + 1, col_end), start = start, stop = stop } + end +end + +---Tack on extra characters to reach `80` character of background using +---some highlight group. +--- +---This is used to fill out the background of the `@fenced_code_block.quarto` capture. +--- +---@param ns number - Namespace number. +---@param bufnr number - Buffer number. +---@param data CodeFenceHLData +---@param options CodeFenceHLOptions +---@return nil +--- +local function append_code_fence_virtual_text(ns, bufnr, data, options) + vim.api.nvim_buf_clear_namespace(bufnr, ns, data.start, data.stop) + + local lines = vim.api.nvim_buf_get_lines(bufnr, data.start, data.stop, false) + for index, line in ipairs(lines) do + local line_len = string.len(line) + local line_remainder = 80 - line_len + local spacer = string.rep(" ", line_remainder) + + vim.api.nvim_buf_set_extmark(bufnr, ns, data.start + index - 1, -1, { + hl_group = options.hl_group, + virt_text = { { spacer, options.hl_group } }, -- Extend bg + virt_text_pos = "inline", + }) + end +end + +---Recursively look for code fences. +--- +---@param ns number - Namespace number. +---@param bufnr number - Buffer number. +---@param root TSNode - Node to inspect. +---@param options CodeFenceHLOptions +---@return nil +--- +local function update_code_fence(ns, bufnr, root, options) + for node in root:iter_children() do + local code_fence_data = get_code_fence_data(bufnr, node, options) + + if code_fence_data ~= nil then + vim.print(code_fence_data) + if code_fence_data.language ~= options.codefence_language then + return + end + + append_code_fence_virtual_text(ns, bufnr, code_fence_data, options) + else + update_code_fence(ns, bufnr, node, options) + end + end +end + +---Used to make codeblocks look like full pages by adding virual text. +---Otherwise background only appears behind text. +--- +---Using `options.include_delim` will require highlighting the entire code fence. +--- +---@param options CodeFenceHLOptions +---@return nil +--- +local function add_codefence_virtual_text(options) + local ns = vim.api.nvim_create_namespace("quarto_code_bg") + local bufnr = vim.api.nvim_get_current_buf() + + local parser = vim.TreeSitter.get_parser(bufnr, "markdown") + local tree = parser:parse()[1] + local root = tree:root() + + vim.print(options) + update_code_fence(ns, bufnr, root, options) +end + +---@param options CodeFenceHLOptions +---@return nil +local function _codefence(options) + vim.api.nvim_set_hl(0, options.hl_group, options.hl) + vim.api.nvim_create_autocmd({ "BufEnter", "TextChanged", "TextChangedI" }, { + pattern = "*.qmd", + callback = function() + return add_codefence_virtual_text(options) + end, + }) +end + +---@param options_list CodeFenceHLOptions[] +local function codefence(options_list) + for _, options in ipairs(options_list) do + _codefence(options) + end +end + +-- NOTE: Colors from solarized pallete: https://en.wikipedia.org/wiki/Solarized +vim.api.nvim_set_hl(0, "@comment.python.quarto_metadata", { fg = "#d3869b" }) +vim.api.nvim_set_hl(0, "@comment.mermaid.quarto_metadata", { fg = "#d3869b" }) +vim.api.nvim_set_hl(0, "@fence", { fg = "#dc322f", italic = true }) +codefence({ + { + codefence_language = "quarto", + hl_group = "@fenced_code_block.quarto", + include_delim = true, + hl = { bg = "#002b36" }, + }, + { + codefence_language = "python", + hl_group = "@fenced_code_block.python", + include_delim = true, + hl = { bg = "#073642" }, + }, + { + codefence_language = "default", + hl_group = "@fenced_code_block.default", + include_delim = true, + hl = { bg = "#002b36", fg = "#268bd2" }, + }, + { + codefence_language = "=html", + hl_group = "@fenced_code_block.html", + include_delim = true, + hl = { bg = "#002b36", fg = "#268bd2" }, + }, + { + hl = { bg = "#002b36", fg = "#268bd2" }, + hl_group = "@fenced_code_block.mermaid", + include_delim = true, + codefence_language = "mermaid", + }, +}) +``` diff --git a/blog/posts/numpy-type-hints/index.qmd b/blog/posts/numpy-type-hints/index.qmd new file mode 100644 index 0000000..601c7a3 --- /dev/null +++ b/blog/posts/numpy-type-hints/index.qmd @@ -0,0 +1,443 @@ +--- +title: About NumPY Type Hints +image: ./leafy-sequence.svg +keywords: + - numpy + - python + - fourier series + - polar coordinates + - quarto + - neoim + - multen + - pandas + - data science +categories: + - python + - quarto + - neovim +floaty: + - identifier: banner + container: + classes: + - p-3 + - my-5 + - border-white + - border-5 + - border + - rounded-5 + classes_cards: + - rounded-4 + - py-1 + classes_card_images: + - rounded-4 + - p-4 + columns: 1 + size: 1 + content: + - title: numpy + key: numpy + image: + iconify: + set: devicon + name: numpy + +links: + - identifier: more-about-neovim + container: + mode: bootstrap + include_titles: true + include_descriptions: true + # include_href: true + classes: + - py-5 + - floaty-hover + classes_cards: + - rounded-top-3 + - py-3 + resize: + xxl: 2 + xl: 2 + lg: 1 + md: 1 + sm: 1 + xs: 1 + content: + - title: Neovim Configuration Source Code + description: Raw Code for my Neovim Configuration + href: https://github.com/acederberg/nvim-config + key: neovim + image: + bootstrap: + name: github + + - title: Neovim Configuration Gallery + description: More About my Neovim Configuration + href: /projects/nvim-config + key: more + image: + bootstrap: + name: code-square +filters: + - ../../filters/floaty.py + - ../../filters/links.py +date: 2-18-2025 +date-modified: 2-18-2025 +--- + +```{=html} + +``` + +::: { #banner } + +::: + +I wrote this up while learning how to use [molten-nvim](https://github.com/benlubas/molten-nvim/blob/main/README.md). +I kept on writing and eventually found more that I wanted to write about type +hints in `numpy` because good type hints make writing code in `python` a +pleasure and not a chore. + +If you are curious about using using `neovim` for data-science and `python` +notebooks, checkout the `neovim` gallery and repository here on the site: + +::: { #more-about-neovim } + +::: + +## About Type Hints for {{< iconify devicon:numpy >}} `Numpy` Arrays + +What I have ascertained so far is: + +- [PEP 646](https://typing.readthedocs.io/en/latest/spec/generics.html#typevartuple) + proposed `TypeVarTuple` and was accepted in `python3.11`. This makes it + possible to parametrize a type using an arbitrary number of parameters. +- PEP 646 is supported by `mypy`. +- [PR #17719 on numpy](https://github.com/numpy/numpy/pull/17719) adds shape + parametrization to `np.ndarray`. +- Type hints for `NDArray` are still not complete or practical, see + [this comment](https://github.com/numpy/numpy/issues/16544#issuecomment-1804251364). +- [Type hints for `NDArray` are not going be checked by + `pyright`](https://github.com/microsoft/pyright/issues/8921#issuecomment-2336434767), + which is the type checker I like to run in my `quarto` notebooks. + +With that out of the way, I would like to say that **the type hints in the +following code are mostly for my own experimentation and are _possibly incorrect_**. +The objective is to have `SeriesPlotter` have correct type hints for the +attributes `sequence` and `series`, which should include the size of the `numpy` +arrays. + +To do this, `SeriesPlotter` is a generic of two parameters - the first +specifies the number of points in the input space and the second specifies the +number of elements in the series. + +## An Example Using The Type Hints + +The objective of the code in @fig-numpy-hints is to plot some graphs of +series using normal and [polar coordinates (via `matplotlib`)](https://matplotlib.org/stable/gallery/pie_and_polar_charts/polar_demo.html) +with type hints. + +::: { #fig-numpy-hints } + +```{python} + +import functools +import math +from typing import Any, Generic, Literal, Protocol, TypeVar +from matplotlib.animation import FuncAnimation +from matplotlib.axes import Axes +from matplotlib.lines import Line2D +import numpy as np +import matplotlib.pyplot as plt +from matplotlib.projections.polar import PolarAxes +from numpy.typing import NDArray + +FloatArray = NDArray[np.float64] +FloatArraySequenceHeight = TypeVar("FloatArraySequenceHeight", bound=int) +FloatArraySequenceWidth = TypeVar("FloatArraySequenceWidth", bound=int) +FloatArraySequence = np.ndarray[ + tuple[FloatArraySequenceHeight, FloatArraySequenceWidth], np.dtype[np.float64] +] +Kind = Literal["series", "sequence"] + + +class SeriesGenerator(Protocol): + def __call__(self, theta: FloatArray, index: int) -> FloatArray: ... + + +class SeriesPlotter(Generic[FloatArraySequenceHeight, FloatArraySequenceWidth]): + """ + + :ivar width: Precision of sequence (number of terms). The second parameter of the generic should match this. + :ivar height: Number of points in the input space. The first parameter of the generic should match this. + """ + + height: int + width: int + func: SeriesGenerator + theta: FloatArray + sequence: FloatArraySequence[FloatArraySequenceHeight, FloatArraySequenceWidth] + series: FloatArraySequence[FloatArraySequenceHeight, FloatArraySequenceWidth] + + def __init__( + self, + func: SeriesGenerator, + *, + height: FloatArraySequenceHeight, + width: FloatArraySequenceWidth, + theta: FloatArray | None = None, + ): + + self.func = func + self.height = height + self.width = width + + self.theta = theta or np.linspace(0, 2 * math.pi, self.height) + self.sequence = self.create_series_sequence() + self.series = self.create_series() + + def create_series_sequence( + self, + ) -> FloatArraySequence[FloatArraySequenceHeight, FloatArraySequenceWidth]: + """ + Given a series whose members are the sequence `a_n`, return + `{a_k: where k is positive and less than 'series_length'}` + + `create_series` can be used to sum these elements together. + """ + + return np.array([self.func(self.theta, index) for index in range(self.width)]) + + def create_series( + self, + ) -> FloatArraySequence[FloatArraySequenceHeight, FloatArraySequenceWidth]: + return np.array([sum(self.sequence[: k + 1]) for k in range(0, self.width)]) + + def create_subplots( + self, + rows: int, + cols: int, + *, + kind: Kind = "series", + subplot_kw: dict[str, Any] = {"projection": "polar"}, + ): + """Put series or sequences into (polar) subplots.""" + + coords = self.sequence if kind == "sequence" else self.series + fig, axs = plt.subplots(rows, cols, subplot_kw=subplot_kw) + positions = ( + (k, k // cols, k % cols) for k in range(rows * cols) if k < self.width + ) + + ax: PolarAxes + for k, row, column in positions: + ax = axs[row][column] + ax.plot(self.theta, coords[k], linewidth=0.8) + + return fig + + def frame_animation_rect( + self, axes: Axes, line: Line2D, frame: int, *, coords + ) -> tuple: + """Animated a single frame.""" + + frame_f = coords[frame] + line.set_ydata(frame_f) + line.set_label(f"n = {frame + 1}") + axes.legend(handles=[line]) + + return (line,) # if callback is None else callback(line) + + def create_animation_rect(self, kind: Kind = "series"): + """ + Create an animation of the series or sequence in increasing precision + in rectilinear coordinates. + """ + + coords = self.series if kind == "series" else self.sequence + frames = list(range(self.width)) + + axs: Axes + fig, axs = plt.subplots(1, 1) + axs.set_title("Sawtooth Wave Foureir Series") + + (line,) = axs.plot(self.theta, self.series[0]) + line.set_label("n = 1") + axs.legend(handles=[line]) + + fn = functools.partial(self.frame_animation_rect, axs, line, coords=coords) + return FuncAnimation(fig, fn, frames=frames, interval=333) + + def create_animation(self): + """Plot series or sequence members in polar coordinates.""" + ... +``` + +Type hints here are used to describe the size of the (two dimensional) `numpy` +array in terms of height and width. This requires that every instance of `SeriesPlotter` +specifies the height (number of points in the domain) and width (number of +sequence members computed) to specify the shape of the `numpy` array stored in +the `series` and `sequence` attributes. For example, the code code in @fig-leafy-script +will generate a $1000 X 8$ array - the first $8$ sequence members will be +computed on a $1000$ point domain. + +::: + +## Maple Leaf Like Cardioid + +::: { #fig-leafy-script } + +```{python} + +class LeafyPlotter(SeriesPlotter[FloatArraySequenceHeight, FloatArraySequenceWidth]): + @staticmethod + def fn(theta: FloatArray, index: int) -> FloatArray: + return np.cos(theta * (3**index)) / (index + 1) + + def frame_animation_rect( + self, axes: Axes, line: Line2D, frame: int, *, coords + ) -> tuple: + bound = max( + abs(min(coords[frame])), + abs(max(coords[frame])), + ) + axes.set_ylim(-bound, bound) + + return super().frame_animation_rect(axes, line, frame, coords=coords) + + def __init__( + self, + *, + height: FloatArraySequenceHeight, + width: FloatArraySequenceWidth, + theta: FloatArray | None = None + ): + super().__init__(self.fn, height=height, width=width, theta=theta) + + +leafy_plotter = LeafyPlotter[Literal[10000], Literal[8]](height=10000, width=8) +leafy_figure = leafy_plotter.create_subplots(2, 2, kind="series") +leafy_figure.savefig("./leafy.svg", format="svg") +plt.close() + +leafy_figure_sequence = leafy_plotter.create_subplots(2, 2, kind="sequence") +leafy_figure_sequence.savefig("./leafy-sequence.svg") +plt.close() + +leafy_animation = leafy_plotter.create_animation_rect() +leafy_animation.save("leafy-rectilinear.gif", writer="pillow") +plt.close() + +leafy_animation = leafy_plotter.create_animation_rect(kind="sequence") +leafy_animation.save("leafy-rectilinear-sequence.gif", writer="pillow") +plt.close() +``` + +::: + +::: {#fig-leafy layout='[[1,1],[1,1]]'} + +![Series plotted in polar coordinates. I think the last one looks vaguely like a maple leaf.](./leafy.svg){ #fig-leafy-polar } + +![Series members plotted in polar coordinates.](./leafy-sequence.svg){ #fig-leafy-polar-seq } + +![Series plotted in x-y coordinates.](./leafy-rectilinear.gif){ #fig-leafy-rect } + +![Series members plotted in x-y coordinates.](./leafy-rectilinear-sequence.gif){ #fig-leafy-rect-seq } + +::: + +## The Sawtooth Cardioid + +Next I wanted to plot a sawtooth wave using a Fourier series, + + + +::: { #fig-sawtooth-script } + +```{python} + +class SawtoothPlotter(SeriesPlotter[FloatArraySequenceHeight, FloatArraySequenceWidth]): + @staticmethod + def fn(theta: FloatArray, index: int) -> FloatArray: + """Computes the term `a_{index}` of the Fourier series for the sawtooth wave.""" + + if index < 0: + raise ValueError + + index += 1 + constant = (1 if index % 2 else -1) / index + constant *= 2 / np.pi + + return constant * np.sin(theta * index) + + def frame_animation_rect( + self, axes: Axes, line: Line2D, frame: int, *, coords + ) -> tuple: + axes.set_ylim(-1.2, 1.2) + return super().frame_animation_rect(axes, line, frame, coords=coords) + + def __init__( + self, + *, + height: FloatArraySequenceHeight, + width: FloatArraySequenceWidth, + theta: FloatArray | None = None + ): + super().__init__(self.fn, height=height, width=width, theta=theta) + + +sawtooth_plotter = SawtoothPlotter[Literal[1440], Literal[32]](height=1440, width=32) +sawtooth_animation = sawtooth_plotter.create_animation_rect("series") +sawtooth_animation.save("sawtooth.gif") +plt.close() +``` + +::: + +![This cardioid is generated in @fig-sawtooth-script](./sawtooth.gif){ #fig-sawtooth-gif } + +## Molten in Action + +![Molten in Action.](~/Pictures/Screenshots/neovim-gallery/molten.gif){#fig-molten} diff --git a/blog/posts/nvim-notes.qmd b/blog/posts/nvim-notes.qmd deleted file mode 100644 index e279358..0000000 --- a/blog/posts/nvim-notes.qmd +++ /dev/null @@ -1,386 +0,0 @@ ---- -title: Neovim Queries ---- - -## Highlighting Quarto Metadata - -First and formost, it is much easier to write queries when using the `:Inspect` -and `:InspectTree` commands. The [documentation on queries](https://neovim.io/doc/user/treesitter.html#_treesitter-syntax-highlighting) -can tell you more about what the various matchers and directives do. - -My objective is highlighting quarto metadata in python documents. -Initially, I wanted to ensure that the metadata was given `YAML` highlighting, -however setting injected content for comments is very tricky. -Instead I decided I would just like to change the color of the metadata -comments. Metadata comments used in quarto look like - -```python -# | label: my-figure -# | fig-cap: An empty plot - -import matplotlib.pyplot as plt - -plt.show() -``` - -This is actually very easy - I just needed to match any comment starting with -`#|` or `# |` and label it with an appropriate capture. -The following is added to my `~/.config/nvim/queries/python/highlights.scm` -and and does exactly this: - -```default -;;extends -; Cannot do injections on comments, since they have no `inner` like strings. -( - (comment) @comment.python.quarto_metadata - (#match? @comment.python.quarto_metadata "^# \\|") -) -``` - -After adding this, I added the following to `~/.config/nvim/init.lua`: - -```lua -vim.api.nvim_set_hl(0, "@comment.python.quarto_metadata", { fg = "d3869b" }) -``` - -## Highlighting Quarto Fenced Divs - -Fenced div's are a fundimental piece of `pandoc` flavored markdown and `pandoc` -filters, and thus `quarto` markdown and `quarto` filters. Typically, they look -like - -````{quarto} ---- -title: Listing page -listing: - - id: my-listings - type: grid - image-height: 256px - sort: - - date desc ---- - -The outer div *(below, starting with four colon marks)* will specify some extra -padding to add around the listing and the text above it. - - -:::: { .px-5 } - - -Page listings will show up in the fenced div bellow: - -::: { #my-listings} - -::: - -:::: - -```default -``` - -```` - -By default, fenced divs come with no additional highlighting and can be quite -difficult to manage when many are nested and mixed in with text. Treesitter -recognizes these fences as `paragraph` nodes, so the query (under -`~/.config/nvim/queries/markdown/highlights.scm`) will be - -```default -( - ( - (paragraph) @_ - (#match? @_ "^:::+ *(\\{ *.* *\\})?$") - ) - @fence.start -) - -( - ( - (paragraph) @_ - (#match? @_ "^:::+ *$") - ) - @fence.stop -) -``` - -Which will match three or more colons followed by the attributes list (anything -enclosed in curly brackets) as `@fence.start` and a line starting a sequence of -three or more colons and `@fence.stop`. Adding highlighting can be done using -`vim.api.nvim_set_hl`: - -```lua -vim.api.nvim_set_hl(0, "@fence", { fg = "#dc322f", italic = true }) -``` - -## Highlighting Quarto Raw `HTML` - -When writing normal `HTML` blocks using markdown code blocks in `quarto` -documents I found that I was getting complete feedback from my `lsp` and -fantastic highlighting, including highlighting of code within the `HTML`, e.g. -`CSS` in `style` tags and `javascript` in `script` tags. -I was not getting this when using raw `HTML` in `quarto` - -often when authoring with quarto I have found it convenient to use raw HTML -blocks like - -````{quarto} - -Some `HTML` directly in quarto: - -```{=html} -

This is some HTML.

- -``` - -```` - -To make this happen, I used `:Inspect` to see which pattern I wanted to match, -and came up with the following: - -```default -;;extends - -( - fenced_code_block - (info_string - (language) @_lang - ) - (code_fence_content) @injection.content - - (#eq? @_lang "=html") - (#set! injection.language "html" ) -) -``` - -I then added this to `~/.config/nvim/queries/markdown/injections.scm`. -Additionally, I wanted to add a background to all of `quarto` in `quarto` -blocks so that they were easier to distinguish from the rest of the markup. -This is easily achieved by adding the following to the corresponding `highlights.scm`: - -```default -( - ( - fenced_code_block - (info_string (language) @_lang) - (#eq? @_lang "quarto") - (code_fence_content) @quarto_in_quarto - ) -) -``` - -and then - -```lua -vim.api.nvim_set_hl(0, "@quarto_in_quarto", { bg = "#7c6f64", fg = "#fbf1c7" }) -``` - -to `~/.config/nvim/init.lua`. To ensure that the background highlighting -was extended all the way to column `80` (even on empty lines) I added the -following `lua` to `init.lua`: - -```lua ----@alias CodeFenceHLData {language: string, start: number, stop: number, } ----@alias CodeFenceHLOptions {hl_group: string, codefence_language: string, include_delim: boolean, hl: table} - ----If a node is a fenced code block, then return the language name if it can ----be determined. ---- ----@param bufnr number - Buffer number. ----@param node TSNode -- Treesitter node ----@param options CodeFenceHLOptions ---- ----@return CodeFenceHLData? ---- -local function get_code_fence_data(bufnr, node, options) - if node:type() ~= "fenced_code_block" then - return - end - - local node_info_string = nil - local node_code_fence_content = nil - - -- NOTE: Look for the info string. - for child in node:iter_children() do - local ttt = child:type() - if ttt == "info_string" then - node_info_string = child - end - - if ttt == "code_fence_content" then - node_code_fence_content = child - end - end - - if not node_info_string then - -- vim.print("No info string for code block") - return - end - - if not node_code_fence_content then - return - end - - local node_language = nil - for child in node_info_string:iter_children() do - if child:type() == "language" then - node_language = child - end - end - - if node_language == nil then - -- print("No language for code block.") - return - end - - local row_start, col_start, _ = node_language:start() - local row_end, col_end, _ = node_language:end_() - - local lines = vim.api.nvim_buf_get_lines(bufnr, row_start, row_end + 1, false) - if not lines then - return - end - - local start, stop - if options.include_delim then - start, _, stop, _ = node:range() - else - start, _, stop, _ = node_code_fence_content:range() - end - - for _, line in ipairs(lines) do - return { language = string.sub(line, col_start + 1, col_end), start = start, stop = stop } - end -end - ----Tack on extra characters to reach `80` character of background using ----some highlight group. ---- ----This is used to fill out the background of the `@fenced_code_block.quarto` capture. ---- ----@param ns number - Namespace number. ----@param bufnr number - Buffer number. ----@param data CodeFenceHLData ----@param options CodeFenceHLOptions ----@return nil ---- -local function append_code_fence_virtual_text(ns, bufnr, data, options) - vim.api.nvim_buf_clear_namespace(bufnr, ns, data.start, data.stop) - - local lines = vim.api.nvim_buf_get_lines(bufnr, data.start, data.stop, false) - for index, line in ipairs(lines) do - local line_len = string.len(line) - local line_remainder = 80 - line_len - local spacer = string.rep(" ", line_remainder) - - vim.api.nvim_buf_set_extmark(bufnr, ns, data.start + index - 1, -1, { - hl_group = options.hl_group, - virt_text = { { spacer, options.hl_group } }, -- Extend bg - virt_text_pos = "inline", - }) - end -end - ----Recursively look for code fences. ---- ----@param ns number - Namespace number. ----@param bufnr number - Buffer number. ----@param root TSNode - Node to inspect. ----@param options CodeFenceHLOptions ----@return nil ---- -local function update_code_fence(ns, bufnr, root, options) - for node in root:iter_children() do - local code_fence_data = get_code_fence_data(bufnr, node, options) - - if code_fence_data ~= nil then - vim.print(code_fence_data) - if code_fence_data.language ~= options.codefence_language then - return - end - - append_code_fence_virtual_text(ns, bufnr, code_fence_data, options) - else - update_code_fence(ns, bufnr, node, options) - end - end -end - ----Used to make codeblocks look like full pages by adding virual text. ----Otherwise background only appears behind text. ---- ----Using `options.include_delim` will require highlighting the entire code fence. ---- ----@param options CodeFenceHLOptions ----@return nil ---- -local function add_codefence_virtual_text(options) - local ns = vim.api.nvim_create_namespace("quarto_code_bg") - local bufnr = vim.api.nvim_get_current_buf() - - local parser = vim.treesitter.get_parser(bufnr, "markdown") - local tree = parser:parse()[1] - local root = tree:root() - - vim.print(options) - update_code_fence(ns, bufnr, root, options) -end - ----@param options CodeFenceHLOptions ----@return nil -local function _codefence(options) - vim.api.nvim_set_hl(0, options.hl_group, options.hl) - vim.api.nvim_create_autocmd({ "BufEnter", "TextChanged", "TextChangedI" }, { - pattern = "*.qmd", - callback = function() - return add_codefence_virtual_text(options) - end, - }) -end - ----@param options_list CodeFenceHLOptions[] -local function codefence(options_list) - for _, options in ipairs(options_list) do - _codefence(options) - end -end - --- NOTE: Colors from solarized pallete: https://en.wikipedia.org/wiki/Solarized -vim.api.nvim_set_hl(0, "@comment.python.quarto_metadata", { fg = "#d3869b" }) -vim.api.nvim_set_hl(0, "@comment.mermaid.quarto_metadata", { fg = "#d3869b" }) -vim.api.nvim_set_hl(0, "@fence", { fg = "#dc322f", italic = true }) -codefence({ - { - codefence_language = "quarto", - hl_group = "@fenced_code_block.quarto", - include_delim = true, - hl = { bg = "#002b36" }, - }, - { - codefence_language = "python", - hl_group = "@fenced_code_block.python", - include_delim = true, - hl = { bg = "#073642" }, - }, - { - codefence_language = "default", - hl_group = "@fenced_code_block.default", - include_delim = true, - hl = { bg = "#002b36", fg = "#268bd2" }, - }, - { - codefence_language = "=html", - hl_group = "@fenced_code_block.html", - include_delim = true, - hl = { bg = "#002b36", fg = "#268bd2" }, - }, - { - hl = { bg = "#002b36", fg = "#268bd2" }, - hl_group = "@fenced_code_block.mermaid", - include_delim = true, - codefence_language = "mermaid", - }, -}) -``` diff --git a/blog/posts/pandas-typing.qmd b/blog/posts/pandas-typing.qmd new file mode 100644 index 0000000..b35ab5a --- /dev/null +++ b/blog/posts/pandas-typing.qmd @@ -0,0 +1,13 @@ +--- +title: About Type Hints in Pandas +draft: true +--- + +```{python} +import pandas as pd +from typing import Annotated + +pd.DataFrame[Annotated[pd.Series, float, float]] +``` + +see [pandera](https://github.com/unionai-oss/pandera). diff --git a/blog/posts/python-animation/index.qmd b/blog/posts/python-animation/index.qmd index 06e5f33..502f1bb 100644 --- a/blog/posts/python-animation/index.qmd +++ b/blog/posts/python-animation/index.qmd @@ -5,7 +5,7 @@ image: ./sine.gif extra: url: /posts/python-animation image: /posts/python-animation/thumb.png -keywords: +keywords: - python - seaborn - numpy @@ -20,25 +20,22 @@ date: 8-6-2024 date-modified: 8-6-2024 --- - -This is an example of how to create animations with ``python`` in ``quarto`` -notebooks using ``matplotlib``. Having not used animations very much in -``matplotlib`` and not knowing much about ``quarto`` I figured I should write +This is an example of how to create animations with `python` in `quarto` +notebooks using `matplotlib`. Having not used animations very much in +`matplotlib` and not knowing much about `quarto` I figured I should write some notes for anybody else who has to deal with this in the future as I did not find it to be completely obvious. - For this demonstration we will plot a sine wave with an increasing phase offset $\phi$ over the interval $[0, \pi)$. More precisely, the graph animated is \begin{equation} - f_\psi: \phi \mapsto sin(\phi + \psi) +f\_\psi: \phi \mapsto sin(\phi + \psi) \end{equation} for one $\psi \in [0, \pi)$ and all $[0, \pi]$ on each frame. - -The following code is used to export a ``gif`` of the sinusoid: +The following code is used to export a `gif` of the sinusoid: ```{python} import matplotlib.pyplot as plt @@ -57,46 +54,42 @@ phis = np.arange(0, 2 * math.pi, step=2 * math.pi / SINE_FRAMES) yys = np.sin(phis) yys_shifted = np.empty_like(yys) + def update(frame: int): - break_index = SINE_FRAMES - frame + break_index = SINE_FRAMES - frame + + # NOTE: Yucky but efficient. + head = yys[:break_index] + tail = yys[break_index:] - # NOTE: Yucky but efficient. - head = yys[:break_index] - tail = yys[break_index:] + yys_shifted[:frame] = tail + yys_shifted[frame:] = head - yys_shifted[:frame] = tail - yys_shifted[frame:] = head + line.set_ydata(yys_shifted) + return (line,) - line.set_ydata(yys_shifted) - return (line,) fig, ax = plt.subplots() -line, = ax.plot(phis, yys) +(line,) = ax.plot(phis, yys) animation = FuncAnimation(fig, update, frames=SINE_FRAMES, interval=1) -animation.save(DIR / "sine.gif", writer="pillow") # Save animation +animation.save(DIR / "sine.gif", writer="pillow") # Save animation -plt.savefig(DIR / "thumb.png") # Save for thumbnail +plt.savefig(DIR / "thumb.png") # Save for thumbnail plt.close() ``` +No figure is generated from this code, instead the figure is included from the +saved `gif` as follows: -No figure is generated from this code, instead the figure is included from the -saved ``gif`` as follows: - - -````quarto +```quarto ![Exported gif](./sine.gif) -```` - +``` which is used to include the following figure: - ![Exported ``gif``](./sine.gif) - -This could also by done by using - +This could also by done by using ```python from IPython.display import HTML @@ -105,28 +98,25 @@ plt.close() HTML(animation.to_jshtml()) ``` - -however I have found this to be quite slow when developing and has some -relative downsides such as a slower render time, difficulty in conditional +however I have found this to be quite slow when developing and has some +relative downsides such as a slower render time, difficulty in conditional rendering, and a slower load time. More is said in the next section. - ## Advantages of Exporting -It is important to note that this figure could be directly embedded within the -webpage. However this results in the webpage being quite large - this can be a -problem when using a ``quarto`` website as it +It is important to note that this figure could be directly embedded within the +webpage. However this results in the webpage being quite large - this can be a +problem when using a `quarto` website as it - Results in a longer load-time. -- Makes it difficult to open when inspecting ``HTML`` output directly. -- Some websites will not craw if the page is too large. - -In my case ``linkedin`` would not create a preview card for my link, -complaining that my document was too large. A version of -[my post about the logistic map](/posts/logistic) reached a horrific size of -about 11M. There are a number of ways the size can be determined - in my case -I used ``wget localhost:3000/posts/logistic`` and got the following output: +- Makes it difficult to open when inspecting `HTML` output directly. +- Some websites will not craw if the page is too large. +In my case `linkedin` would not create a preview card for my link, +complaining that my document was too large. A version of +[my post about the logistic map](/posts/logistic) reached a horrific size of +about 11M. There are a number of ways the size can be determined - in my case +I used `wget localhost:3000/posts/logistic` and got the following output: ```default --2024-08-06 12:29:38-- http://localhost:3000/posts/logistic @@ -141,11 +131,9 @@ Length: 12015385 (11M) [text/html] Saving to: ‘logistic’ ``` - -Switching to ``gif`` output, the size of the webpage is now drastically +Switching to `gif` output, the size of the webpage is now drastically reduced: - ```default --2024-08-06 13:13:44-- http://localhost:3000/posts/logistic Resolving localhost (localhost)... 127.0.0.1 @@ -158,4 +146,3 @@ HTTP request sent, awaiting response... 200 OK Length: 96239 (94K) [text/html] Saving to: ‘logistic.1’ ``` - diff --git a/blog/posts/quarto-kube-static/index.qmd b/blog/posts/quarto-kube-static/index.qmd index 4846bbe..ee2d6db 100644 --- a/blog/posts/quarto-kube-static/index.qmd +++ b/blog/posts/quarto-kube-static/index.qmd @@ -25,95 +25,92 @@ date: 8-2-2024 date-modified: 8-2-2024 --- -Hello readers! +Hello readers! -In this blog post I will be demonstrating how to deploy your static ``quarto`` -blog to ``kubernetes`` using manifests. If your blog needs ``quarto serve`` +In this blog post I will be demonstrating how to deploy your static `quarto` +blog to `kubernetes` using manifests. If your blog needs `quarto serve` this approach will not serve your purposes. This blog post will go into great detail as there does not appear to be a high -degree of intersection between users of ``kubernetes`` and notebooks like -``quarto``. For example, this blog post will give you a starting point if you -have little understanding ``kubernetes`` and outline some of the things that -will be required to deploy your app that might be taken for granted if the -primary audience were seasoned users of ``kubernetes``. - -I would first recommend that you look at the articles about containerization of -``quarto`` with ``docker`` (and if it floats your boat making a -``docker-compose`` project for the development of your ``quarto`` website). -There will soon be subsequent articles about deploying your ``quarto`` app to -``kubernetes`` in ``pulumi``, a wonderful infrastructure as code (IaC) tool -that is a complete alternative to ``terraform`` that avoids the many pitfalls +degree of intersection between users of `kubernetes` and notebooks like +`quarto`. For example, this blog post will give you a starting point if you +have little understanding `kubernetes` and outline some of the things that +will be required to deploy your app that might be taken for granted if the +primary audience were seasoned users of `kubernetes`. + +I would first recommend that you look at the articles about containerization of +`quarto` with `docker` (and if it floats your boat making a +`docker-compose` project for the development of your `quarto` website). +There will soon be subsequent articles about deploying your `quarto` app to +`kubernetes` in `pulumi`, a wonderful infrastructure as code (IaC) tool +that is a complete alternative to `terraform` that avoids the many pitfalls of domain specific languages. -Deploying your quarto notebooks is an excellent way to build a portfolio. +Deploying your quarto notebooks is an excellent way to build a portfolio. One may show of their cool data science projects, write how to articles, and -render mathematics documents using ``TeX``. +render mathematics documents using `TeX`. -Further, your notebooks do not need to contain executable code cells for them -to be published to your blog. For instance, this document is rendered as part +Further, your notebooks do not need to contain executable code cells for them +to be published to your blog. For instance, this document is rendered as part of a quarto blog deployed roughly as stated in this article and only uses the -``markdown`` feature of quarto. +`markdown` feature of quarto. +## Choosing a Kubernetes Cluster -## Choosing a Kubernetes Cluster - -First of all, you will need a ``kubernetes`` cluster. This can be accomplished a -number of ways and the specifics are far beyond the scope of this blog post. +First of all, you will need a `kubernetes` cluster. This can be accomplished a +number of ways and the specifics are far beyond the scope of this blog post. However, a few good places to start are: - [Minikube](https://minikube.sigs.k8s.io/docs/) - A cloud free solution. This - will allow one to run a cluster locally on their own machine. If you're just - seeing if it is possible to deploy your quarto site, then I would recommend - this as it is the cheapest. *(all you need is electricity!)* + will allow one to run a cluster locally on their own machine. If you're just + seeing if it is possible to deploy your quarto site, then I would recommend + this as it is the cheapest. _(all you need is electricity!)_ -- [Linode Kubernetes Engine](https://www.linode.com/products/kubernetes/) - By - far the cheapest cloud based option. It is as complete as any of the other +- [Linode Kubernetes Engine](https://www.linode.com/products/kubernetes/) - By + far the cheapest cloud based option. It is as complete as any of the other cloud options mentioned here. The only drawback is that you might have to - deploy your own ingress controller (for instance [traefik](https://doc.traefik.io/traefik/providers/kubernetes-ingress/) - or the [``nginx`` ingress controller](https://github.com/kubernetes/ingress-nginx) + deploy your own ingress controller (for instance [Traefik](https://doc.traefik.io/traefik/providers/kubernetes-ingress/) + or the [`nginx` ingress controller](https://github.com/kubernetes/ingress-nginx) to direct traffic to your deployment. **I will probably write a blog post on this matter soon.** -- [Azure Kubernetes Services](https://azure.microsoft.com/en-us/products/kubernetes-service/) - This - is probably overkill for an experiment, and I would not recommend ``azure`` - for your experimental deployments as there are many options to get web - traffic to your ``kubernetes`` deployment that can become very expensive (for +- [Azure Kubernetes Services](https://azure.microsoft.com/en-us/products/kubernetes-service/) - This + is probably overkill for an experiment, and I would not recommend `azure` + for your experimental deployments as there are many options to get web + traffic to your `kubernetes` deployment that can become very expensive (for instance the azure application gateway). - ## Building a Container Image -In my blogpost about building a ``docker`` image you can find out how to -``containerize`` your ``quarto`` project. There are a few important +In my blog post about building a `docker` image you can find out how to +`containerize` your `quarto` project. There are a few important assumptions about your project: -1. The quarto project should not use ``shiny`` and should not require the use - of ``quarto serve``. I will probably write a blog post about this once I +1. The quarto project should not use `shiny` and should not require the use + of `quarto serve`. I will probably write a blog post about this once I have to deploy such a thing myself. -2. The quarto project container has been published to dockerhub using the tag - ``{your-dockerhub-username}/quarto-blog:latest``. -3. The container will serve the ``quarto`` website on port ``8080``. - +2. The quarto project container has been published to DockerHub using the tag + `{your-dockerhub-username}/quarto-blog:latest`. +3. The container will serve the `quarto` website on port `8080`. ## Install the Kubernetes Command Line Client -``kubernetes`` is communicated with via an HTTP API - this means that there are -a number of means to talk to the API - for instance +`kubernetes` is communicated with via an HTTP API - this means that there are +a number of means to talk to the API - for instance - [python client](https://github.com/kubernetes-client/python) - If you want - to write some automation in ``python``. -- [go client](https://github.com/kubernetes/client-go) - If you want to - write some automation in ``go``. -- [command line client](https://kubernetes.io/docs/tasks/tools/) - This is the - option we will be using today. The ``YAML`` manifests written in this - document will require some extra work to deploy using the other clients, for + to write some automation in `python`. +- [go client](https://github.com/kubernetes/client-go) - If you want to + write some automation in `go`. +- [command line client](https://kubernetes.io/docs/tasks/tools/) - This is the + option we will be using today. The `YAML` manifests written in this + document will require some extra work to deploy using the other clients, for instance [see this stack exchange post](https://stackoverflow.com/questions/58783939/using-client-go-to-kubectl-apply-against-the-kubernetes-api-directly-with-mult). -Further, it is even possible to use the API using ``curl`` or ``python``s -``requests`` or ``httpx`` library - I would not recommend it. +Further, it is even possible to use the API using `curl` or `python`s +`requests` or `httpx` library - I would not recommend it. -Once you think you have installed the ``kubectl`` command line client, run +Once you think you have installed the `kubectl` command line client, run ```sh kubectl version --output=yaml @@ -144,7 +141,7 @@ serverVersion: minor: "29" platform: linux/amd64 ``` - + Next, ensure that you are connected to the cluster that you want to deploy to. This can be done like @@ -159,60 +156,55 @@ CURRENT NAME CLUSTER AUTHINFO NAMESPACE * lkeXXXXXX-ctx lkeXXXXXX lkeXXXXXX-admin * ``` - ## Kubernetes Manifests -A ``kubernetes`` manifest is just a ``YAML`` file that is interpreted by the -``kubectl`` client and transformed into API calls. This will result in the -creation of resources on your ``kubernetes`` cluster. - +A `kubernetes` manifest is just a `YAML` file that is interpreted by the +`kubectl` client and transformed into API calls. This will result in the +creation of resources on your `kubernetes` cluster. ### Creating a Namespace -First, in a new file ``quarto-blog.yaml``, we will create a ``namespace``, +First, in a new file `quarto-blog.yaml`, we will create a `namespace`, which will help keep the objects created separate from any existing resources: ```yaml ---- apiVersion: v1 kind: Namespace metadata: name: quarto-blog ``` -then run +then run ```sh kubectl apply -f quarto-blog.yaml ``` -This will instantiate the namespace within your ``kubernetes`` cluster. To see +This will instantiate the namespace within your `kubernetes` cluster. To see verify namespace was created, run ```sh kubectl get ns ``` -and finally, run +and finally, run ```sh kubectl config set-context --current --namespace=quarto-blog ``` -This will make sure that ``kubectl get`` will look in the ``quarto-blog`` -namespace. - +This will make sure that `kubectl get` will look in the `quarto-blog` +namespace. ### Creating a Deployment -Now a ``Deployment`` can be added to the new ``Namespace``. A deployment is a -self healing set of ``Pods`` (which are groups of containers). This means that -when a pod dies or is directly removed, it will be replaced by a new one by the +Now a `Deployment` can be added to the new `Namespace`. A deployment is a +self healing set of `Pods` (which are groups of containers). This means that +when a pod dies or is directly removed, it will be replaced by a new one by the deployment. ```yaml # Also in ``quarto-blog.yaml`` ---- apiVersion: apps/v1 metadata: namespace: quarto-blog @@ -223,7 +215,7 @@ spec: matchLabels: app: quarto-blog template: - metadata: + metadata: labels: app: quarto-blog spec: @@ -231,7 +223,7 @@ spec: - name: quarto-blog image: "{your-dockerhub-username}/quarto-blog:latest" imagePullPolicy: Always - ports: + ports: - name: captura-http containerPort: 8080 readinessProbe: @@ -247,31 +239,30 @@ spec: There are noteworthy aspects of this manifest: -- A new ``YAML`` document is started in ``quarto-blog.yaml`` by writing ``---`` +- A new `YAML` document is started in `quarto-blog.yaml` by writing `---` on its own line. -- The ``spec.selector.matchLabels`` should be some subset of ``spec.template.metadata.labels``. -- It is necessary to tell ``kubernetes`` the port that this will be hosted on. -- The ``readinessProbe`` field will check to make sure that the site is being - successfully served. +- The `spec.selector.matchLabels` should be some subset of `spec.template.metadata.labels`. +- It is necessary to tell `kubernetes` the port that this will be hosted on. +- The `readinessProbe` field will check to make sure that the site is being + successfully served. -Once again, use ``kubectl apply -f ./quarto-blog.yaml`` to start up your -``Deployment``. If everything goes right, running +Once again, use `kubectl apply -f ./quarto-blog.yaml` to start up your +`Deployment`. If everything goes right, running ```sh kubectl get deployments ``` -should display +should display ```default NAME READY UP-TO-DATE AVAILABLE AGE quarto-blog 1/1 1 1 2d20h ``` -If the ``Ready`` column does not show ``1/1`` the following section will aid +If the `Ready` column does not show `1/1` the following section will aid in debugging. - ### Debugging the Deployment If things do not go smoothly, some solutions to likely cases are provided here. @@ -281,44 +272,41 @@ To get more specifics of what went wrong, run kubectl get pods --selector app=quarto-blog ``` -If the image provided in the manifest is not found, the output of -``kubectl get deployments`` will be like +If the image provided in the manifest is not found, the output of +`kubectl get deployments` will be like ```default NAME READY STATUS RESTARTS AGE {name of pod} 0/1 ImagePullBackOff 0 98s ``` -In this case, go inspect your ``hub.docker.com`` repository and click on the -``latest`` tag (or the tag you desire). The image name to use should be on the +In this case, go inspect your `hub.docker.com` repository and click on the +`latest` tag (or the tag you desire). The image name to use should be on the page: -![Dockerhub image name](./dockerhub-imgname.png){.no-filter} - +![DockerHub image name](./dockerhub-imgname.png){.no-filter} -If your pod(s) are crashing (that is, they have the value ``CrashLoopBackOff`` -in the ``STATUS`` column), like +If your pod(s) are crashing (that is, they have the value `CrashLoopBackOff` +in the `STATUS` column), like ```default NAME READY STATUS RESTARTS AGE quarto-blog-75cf7b96c6-7n8m7 0/1 CrashLoopBackOff 8 (2m58s ago) 19m ``` -then ``kubectl describe pod/{name of pod}`` and ``kubectl logs {name of pod}`` +then `kubectl describe pod/{name of pod}` and `kubectl logs {name of pod}` can help point you towards any server failures. - ### Creating a Service -A service determines how your pods will be grouped and when their traffic is -routed to the internet. The ingress controller will use services to route -traffic thus services are necessary. In this instance, only the pods from -``quarto-blog`` are to be selected. To do this the following must be added -to ``quarto-blog.yaml``: +A service determines how your pods will be grouped and when their traffic is +routed to the internet. The ingress controller will use services to route +traffic thus services are necessary. In this instance, only the pods from +`quarto-blog` are to be selected. To do this the following must be added +to `quarto-blog.yaml`: ```yaml # Also in ``quarto-blog.yaml`` ---- apiVersion: v1 kind: Service metadata: @@ -332,30 +320,28 @@ spec: port: 80 ``` -this will route all of the traffic from port ``8080`` of the pods to port -``80`` of the service. Once again ``kubectl apply -f quarto-blog.yaml`` and -verify that the service exists and is properly function with -``kubectl get services``. - +this will route all of the traffic from port `8080` of the pods to port +`80` of the service. Once again `kubectl apply -f quarto-blog.yaml` and +verify that the service exists and is properly function with +`kubectl get services`. ### Routing -In my particular case, I have decided to use ``traefik`` as my ingress -controller. Setting up ``traefik`` in ``kubernetes`` with ``letsencrypt`` can be +In my particular case, I have decided to use `traefik` as my ingress +controller. Setting up `traefik` in `kubernetes` with `letsencrypt` can be a pain, and I will go into the details in a subsequent blog post. The following -assumes that +assumes that -1. ``traefik`` and its custom resource definitions have been added to - ``kubernetes``. -3. ``traefik`` has a certificate resolver ``letsencrypt``. -2. That your website is ``example.io``. +1. `traefik` and its custom resource definitions have been added to + `kubernetes`. +2. `traefik` has a certificate resolver `letsencrypt`. +3. That your website is `example.io`. -``traefik`` will respond to http ``traefik`` on ``blog.example.io`` with the -response from the ``quarto-blog`` service when provided the following -additional manifest in ``quarto-blog.yaml``: +`traefik` will respond to http `traefik` on `blog.example.io` with the +response from the `quarto-blog` service when provided the following +additional manifest in `quarto-blog.yaml`: ```yaml ---- - apiVersion: traefik.io/v1alpha1 kind: Middleware metadata: @@ -398,13 +384,11 @@ spec: port: 80 ``` - -Now ``kubectl apply -f quarto-blog.yaml``. Finally, browse to the matched host +Now `kubectl apply -f quarto-blog.yaml`. Finally, browse to the matched host and your webpage should appear with valid https: ![Deployed blog](./blog.png){.no-filter} - ## Removal If you would like to undo all of the actions in this article, do diff --git a/blog/projects/blog/build.mmd b/blog/projects/blog/build.mmd new file mode 100644 index 0000000..34bdc48 --- /dev/null +++ b/blog/projects/blog/build.mmd @@ -0,0 +1,33 @@ +architecture-beta + + group builder(misc:build)[Build Stage] + + service tex(devicon:tex)[Install TinyTex] in builder + + group python_deps(logos:python)[python dependencies] in builder + service blog_content(hugeicons:folder-02)[blog content] + service pyproject_toml(devicon:poetry)[pyproject toml] in python_deps + + junction quartoDeps + blog_content:T -- B:quartoDeps + pyproject_toml{group}:B -- T:quartoDeps + tex:L -- R:quartoDeps + + service quarto(misc:quarto)[quarto render] in builder + quarto:R <-- L:quartoDeps + + service google_analytics(logos:google-analytics)[Google Analytics] in builder + service kaggle_api_key(devicon:kaggle)[Kaggle API Key] in builder + junction buildSecrets in builder + buildSecrets:R -- L:quartoDeps + + google_analytics:T -- B:buildSecrets + kaggle_api_key:B -- T:buildSecrets + quarto:R -- L:buildSecrets + + + quarto:L --> R:build + + group production(devicon:nodejs)[Production] + service build(hugeicons:package)[Quarto Render] in production + diff --git a/blog/projects/blog/build.qmd b/blog/projects/blog/build.qmd index 639941a..71bcdbb 100644 --- a/blog/projects/blog/build.qmd +++ b/blog/projects/blog/build.qmd @@ -33,38 +33,7 @@ This stage does not do much - it just installs the dependencies for `quarto` its ```{mermaid} %%| fig-cap: Build stage diagram. %%| fig-label: build-mermaid -architecture-beta - - group builder(misc:build)[Build Stage] - - service tex(devicon:tex)[Install TinyTex] in builder - - group python_deps(logos:python)[python dependencies] in builder - service blog_content(hugeicons:folder-02)[blog content] - service pyproject_toml(devicon:poetry)[pyproject toml] in python_deps - - junction quartoDeps - blog_content:T -- B:quartoDeps - pyproject_toml{group}:B -- T:quartoDeps - tex:L -- R:quartoDeps - - service quarto(misc:quarto)[quarto render] in builder - quarto:R <-- L:quartoDeps - - service google_analytics(logos:google-analytics)[Google Analytics] in builder - service kaggle_api_key(devicon:kaggle)[Kaggle API Key] in builder - junction buildSecrets in builder - buildSecrets:R -- L:quartoDeps - - google_analytics:T -- B:buildSecrets - kaggle_api_key:B -- T:buildSecrets - quarto:R -- L:buildSecrets - - - quarto:L --> R:build - - group production(devicon:nodejs)[Production] - service build(hugeicons:package)[Quarto Render] in production +%%| file: include build.mmd ``` This is where the action happens. diff --git a/blog/projects/blog/index.qmd b/blog/projects/blog/index.qmd index 9a08856..2f2f681 100644 --- a/blog/projects/blog/index.qmd +++ b/blog/projects/blog/index.qmd @@ -10,8 +10,17 @@ filters: - ../../filters/floaty.py floaty: - identifier: thank-you-tools + overlay: + identifier: thank-you-overlay + classes: [overlay-blur] + colorize: + color: teal + color_text: black + color_test_hover: white container: size: 1 + classes_cards: + - py-5 content: - image: iconify: diff --git a/blog/projects/index.qmd b/blog/projects/index.qmd index bc194ff..2d97e29 100644 --- a/blog/projects/index.qmd +++ b/blog/projects/index.qmd @@ -8,6 +8,8 @@ listing: contents: - nvim-config/index.qmd - blog/index.qmd + - /components/floaty.qmd + - /components/overlay.qmd --- ## Projects diff --git a/blog/resume/_metadata.yaml b/blog/resume/_metadata.yaml index 1a89e03..987370f 100644 --- a/blog/resume/_metadata.yaml +++ b/blog/resume/_metadata.yaml @@ -196,7 +196,7 @@ links: - key: resume title: PDF - href: https://acederberg.io/resume + href: https://acederberg.io/resume/resume.pdf tooltip: Most recent version of my resume in ``PDF`` format. label: Resume # formats: ["latex"] @@ -220,7 +220,7 @@ contacts: size: 6 include_tooltips: true include_titles: true - include_descriptions: false + include_descriptions: true columns: 3 attributes_cards: data-bs-offset: '[0,16]' @@ -291,11 +291,19 @@ resume: title: Senior Software Engineer start: January 2022 stop: December 2023 + - identifier: resume-experience-blog organization: acederberg.io title: Sole Proprietor start: January 2024 stop: Now + + - identifier: resume-experience-dsi + organization: University of New Mexico + title: Research Assistent + start: August 2019 + stop: December 2020 + headshot: url: https://avatars.githubusercontent.com/u/77076023?v=4 title: Headshot diff --git a/blog/resume/about.qmd b/blog/resume/about.qmd index c28f7ed..ff6755d 100644 --- a/blog/resume/about.qmd +++ b/blog/resume/about.qmd @@ -23,9 +23,5 @@ Using `quarto` and some `pandoc` filters, I made an interactive resume viewable - Version control. - Integration into something I'd be working on frequently. -- Editting in my favorite tool `nvim` instead of [overleaf](https://overleaf.com). +- Editing in my favorite tool `nvim` instead of [overleaf](https://overleaf.com). - If I do not have my computer on hand, I can just send somebody a link instead of emailing them a `PDF`. - -## Demo - -![Demonstration](./demo.gif){ fig-align="center" width="70%" } diff --git a/blog/resume/cover-letter.qmd b/blog/resume/cover-letter.qmd index 68a5992..e69de29 100644 --- a/blog/resume/cover-letter.qmd +++ b/blog/resume/cover-letter.qmd @@ -1,12 +0,0 @@ ---- -title: Generic Cover Letter ---- - -Dear reader, - -I hear a lot about Indica Labs and would like to reach out for potential employment. -DevOps engineering and software are my strong suite and I'd be delighted to stay in here Albuquerque. -For more about my experience, please see my resume hosted on my blog https://previewe.acederberg.io/resume. - -Best, -Adrian Cederberg diff --git a/blog/resume/index.qmd b/blog/resume/index.qmd index 64edf58..c6ee2dc 100644 --- a/blog/resume/index.qmd +++ b/blog/resume/index.qmd @@ -116,6 +116,8 @@ NOTE: This section should contain education, profile, and experience. {{< include ./partials/_mve.qmd >}} +{{< include ./partials/_research.qmd >}} + ## Education { .py-3 #resume-education } {{< include ./partials/_unm.qmd >}} diff --git a/blog/resume/notes.qmd b/blog/resume/notes.qmd index cee97e3..3e6e2fb 100644 --- a/blog/resume/notes.qmd +++ b/blog/resume/notes.qmd @@ -52,7 +52,7 @@ site since running out of space is not a concern there). I should try to investigate some applicant trashing systems too. -## Adrew LeCivita - [4 Resume Writing Strategies](https://www.youtube.com/watch?v=EBokaUxGvfc) +## Andrew LeCivita - [4 Resume Writing Strategies](https://www.youtube.com/watch?v=EBokaUxGvfc) Create intrigue! diff --git a/blog/resume/partials/_blog.qmd b/blog/resume/partials/_blog.qmd index 6f11717..53612b2 100644 --- a/blog/resume/partials/_blog.qmd +++ b/blog/resume/partials/_blog.qmd @@ -26,8 +26,9 @@ professional portfolio. ---> -Started blogging about topics in data science, data structures and algorithms, -and development operations to share insights, expertise, and progress. +Established a technical blog covering topics in data science, data structures +and algorithms, and development operations to share insights, expertise, and +progress. Built [acederberg.io](https://acederberg.io/projects/blog) using `quarto` and `python` to showcase 30+ blog posts, 4 projects, a resume, and a professional portfolio. diff --git a/blog/resume/partials/_mve.qmd b/blog/resume/partials/_mve.qmd index 3eca821..d040409 100644 --- a/blog/resume/partials/_mve.qmd +++ b/blog/resume/partials/_mve.qmd @@ -1,24 +1,24 @@ :::: { #resume-experience-mve .experience } -Lead the architecting and implementation of building management and analytics -SaaS to empower building management teams and owners to optomize and have clear -insights into their utility usage and expendurature. +Lead the design and implementation of building management and analytics +SaaS to empower building management teams and owners to optimize and have clear +insights into their utility usage and expenditure. Designed, implemented, and tested the Cufflink data API (using `python`), SaaS continuous integration and delivery across multiple developers and projects, and infrastructure as code projects to reliably power the user dashboard and deliver new releases. - Ensured confidentiality, security, and accuracy of customer data from the - Cufflink API using `OAuth` to safegaurd API endpoints, `MySQL` to make secure + Cufflink API using `OAuth` to safeguard API endpoints, `MySQL` to make secure queries, `traefik` to implement `SSL` termination, and writing robust tests with `PyTest` to ensure the effectiveness of these measures. -- Enhanced developer productivity and ensure software quality with automated +- Improved developer efficiency and ensured software quality with automated tests and `docker` builds in `bitbucket` pipelines. - Ensured SaaS platform uptime to above `99%`, platform stability and reproducibility using `terraform` infrastructure as code on `Azure`, and guaranteed rapid software delivery by designing self testing deployments using `helm`. -- Streamlined internal data opperations and created data pipeline visibility by +- Streamlined internal data operations and created data pipeline visibility by initiating the development of an admin dashboard using using `NextJS`. :::: diff --git a/blog/resume/partials/_profile.qmd b/blog/resume/partials/_profile.qmd index f8cde05..8820472 100644 --- a/blog/resume/partials/_profile.qmd +++ b/blog/resume/partials/_profile.qmd @@ -11,8 +11,8 @@ Background in applied mathematics and engineering. ---> Software engineer with expertise in architecting and implementing REST APIs -with `python`, success in buliding SaaS, and DevOps/Clound engineering to -support SaaS (with `teraform`) for hunreds of users in a startup environment. +with `python`, success in building SaaS, and DevOps/Cloud engineering to +support SaaS (with `teraform`) for hundreds of users in a startup environment. Proven track record of enhancing developer productivity and ensuring bulletproof deployments through automation (in `bitbucket` pipelines and `github actions`) and containerization/reliability (with `kubernetes`). diff --git a/blog/resume/partials/_projects.qmd b/blog/resume/partials/_projects.qmd index 02060a3..acc43a5 100644 --- a/blog/resume/partials/_projects.qmd +++ b/blog/resume/partials/_projects.qmd @@ -18,7 +18,7 @@ Click on any the content bellow to learn more. - [Acederberg.io](https://acederberg.io/projects/website) - My blog and portfolio made with `quarto`, `python`, `javascript`, and `docker`. - [Captura](https://github.com/acederberg/captura) - Permissions management service using `FastAPI` and `sqlalchemy`. -- [Automation](https://acederberg.io/projects/automation) - Automation for my blog and captura using `github action`, `pulumi`, and `linode`. +- [Automation](https://acederberg.io/projects/automation) - Automation for my blog and Captura using `github actions`, `pulumi`, and `linode`. - [NeoVim Configuration](https://acederberg.io/projects/nvim) - To make for an excellent development experience in `neovim` written in `lua`. Check out [my github](https://github.com/acederberg) to learn more. diff --git a/blog/resume/partials/_research.qmd b/blog/resume/partials/_research.qmd new file mode 100644 index 0000000..5be8598 --- /dev/null +++ b/blog/resume/partials/_research.qmd @@ -0,0 +1,16 @@ +::: { #resume-experience-dsi } + +Researched air plasma generation for astronautics with Craig Davidson of +Dark Sea Industries. + +- Documented efficient air plasma generation using magneto-fluid-dynamic methods. + Built various components for experimental setup including magnetic venturi + and power supply array to define electrodynamic environment + by passing current through large magnets composing the magnetic venturi. +- Recorded experimental session IR and magnetic and electric field data using + a multiplexed `I2C` array controlled by a raspberry pi with code developed in + `python` and `c`. +- Processed and plotted experimental data using `numpy` and `matplotlib` to + document findings. + +::: diff --git a/blog/resume/partials/_skills.qmd b/blog/resume/partials/_skills.qmd index 5fae59c..a5dde41 100644 --- a/blog/resume/partials/_skills.qmd +++ b/blog/resume/partials/_skills.qmd @@ -2,11 +2,11 @@ ::: { .content-visible when-format="latex" } -Software implementation (`python`, `javascsript`, `shell`, `git`, `docker`), -deployment (`terraform`, `pulumi`, `kubernetes`, `actions`), -back-end (`fastapi`, `mysql`, `mongodb`), -and front-end (`react`, `nextjs`, `scss`, `jinja`). -For a more exhaustive coverage of my skills, see [the skills page on my website](https://acederbergio/resume/skills.html). +Software implementation (`Python`, `JavaScsript`, `shell`, `Git`, `Docker`), +deployment (`Terraform`, `Pulumi`, `Kubernetes`, `actions`), +back-end (`FastAPI`, `MySQL`, `MongoDB`), +and front-end (`React`, `NextJS`, `SCSS`, `Jinja`). +For a more exhaustive coverage of my skills, see [the skills page on my website](https://acederbergio/resume/index.html#skills). ::: @@ -66,8 +66,8 @@ distribution, and programmatic acquisition of data is paramount. I have plenty of experience developing the tools for this - for instance REST APIs for the distribution of data and ETLs for the aggregation of data -in languages like `python` {{< iconify devicons python >}}, and -`nodejs` {{< iconify devicons nodejs>}} using database technologies a storage +in languages like `python` {{< iconify devicon python >}}, and +`nodejs` {{< iconify devicon nodejs>}} using database technologies a storage solutions such as `mysql` {{< iconify devicon mysql >}}, `mongodb` {{< iconify devicon mongodb >}}, and `redis` {{< iconify devicon redis >}}. diff --git a/blog/resume/partials/_unm.qmd b/blog/resume/partials/_unm.qmd index d0e9775..905830f 100644 --- a/blog/resume/partials/_unm.qmd +++ b/blog/resume/partials/_unm.qmd @@ -1,7 +1,7 @@ :::: { #resume-education-unm .education education-item=unm } -- Ensured consistent, actionable feedback and organization itegrity as a tutor - and exam proctor in remedial algebra at UNMs math learning lab. +- Ensured consistent, actionable feedback and organization integrity as a tutor + and exam proctor in remedial algebra at UNM's math learning lab. Ensured actionable and detailed feedback by grading college algebra (100+ students), undergraduate linear algebra (20+ students), and ordinary differential (20+ students) equations homework. @@ -11,6 +11,6 @@ - Documented efficient air plasma production leveraging advanced principals in fluid dynamics, electricity, and magnetism. Recorded and analyzed large sets of experimental results using `python` by building and - programming I2C sensor arrays using rapberry pi and arduino. + programming I2C sensor arrays using Raspberry Pi and Arduino. :::: diff --git a/blog/resume/resume-2.qmd b/blog/resume/resume-2.qmd deleted file mode 100644 index d36b3b8..0000000 --- a/blog/resume/resume-2.qmd +++ /dev/null @@ -1,60 +0,0 @@ ---- -title: Adrian Cederberg -subtitle: Software Engineer | Resume v5 -format: - pdf: - template: ./templates/template.tex - keep-tex: true - template-partials: - - ./templates/title.tex -filters: - - ../filters/resume.py - - ../filters/minipage.py ---- - - ::: { #resume } - - ::: { #head } - -{{< include ./partials/_title.qmd >}} - -\begin{center} -\phantomsection\label{resume-contacts} -\faLocationArrow { Albuquerque, NM } \label{location} -\faPhone { (505) 589 - 6914 } \label{phone} -\faEnvelope { adrn.cederberg123@gmail.com } \label{email} -\end{center} - -\begin{center} -\phantomsection\label{resume-links} -\href{https://www.linkedin.com/in/adrian-cederberg-b453571b9}{\faLinkedin { Linkedin } \label{linkedin}} -\href{https://github.com/acederberg}{\faGithub { Github } \label{github}} -\href{https://acederberg.io/resume.html}{\faCubes { Website } \label{website}} -\href{https://acederberg.io/resume/resume.pdf}{\faFilePdf { PDF } \label{resume}} -\end{center} - -\vspace{16pt} - - ::: - -{{< include ./partials/_profile.qmd >}} - -## Experience - -{{< include ./partials/_blog.qmd >}} - -{{< include ./partials/_mve.qmd >}} - -## Education - -{{< include ./partials/_unm.qmd >}} - -## Skills - -{{< include ./partials/_skills.qmd >}} - -## Projects - -{{< include ./partials/_projects.qmd >}} - - ::: diff --git a/blog/resume/resume.qmd b/blog/resume/resume.qmd index d211c6a..a4cd75d 100644 --- a/blog/resume/resume.qmd +++ b/blog/resume/resume.qmd @@ -1,8 +1,6 @@ --- title: Adrian Cederberg subtitle: Software Engineer | Resume v5 -extra: - orientation: landscape format: pdf: template: ./templates/template.tex @@ -14,12 +12,33 @@ filters: - ../filters/minipage.py --- - ::: { #resume } + ::: { #resume } - ::: { #bottom-left .minipage minipage-width=".49" minipage-height="0.80" .minipage-first } + ::: { #head } {{< include ./partials/_title.qmd >}} +```{=tex} +\begin{center} +\phantomsection\label{resume-contacts} +\faLocationArrow { Albuquerque, NM } \label{location} +\faPhone { (505) 589 - 6914 } \label{phone} +\faEnvelope { adrn.cederberg123@gmail.com } \label{email} +\end{center} + +\begin{center} +\phantomsection\label{resume-links} +\href{https://www.linkedin.com/in/adrian-cederberg-b453571b9}{\faLinkedin { Linkedin } \label{linkedin}} +\href{https://github.com/acederberg}{\faGithub { Github } \label{github}} +\href{https://acederberg.io/resume.html}{\faCubes { Website } \label{website}} +\href{https://acederberg.io/resume/resume.pdf}{\faFilePdf { PDF } \label{resume}} +\end{center} +``` + +\vspace{16pt} + + ::: + {{< include ./partials/_profile.qmd >}} ## Experience @@ -28,14 +47,7 @@ filters: {{< include ./partials/_mve.qmd >}} - ::: - -{{< include ./partials/_tex_filler.qmd >}} - - ::: { #bottom-right .minipage minipage-width=".49" minipage-height="0.80" .minipage-final } - -{{< include ./partials/_contact.qmd >}} -{{< include ./partials/_links.qmd >}} +{{< include ./partials/_research.qmd >}} ## Education @@ -49,5 +61,4 @@ filters: {{< include ./partials/_projects.qmd >}} - ::: - ::: + ::: diff --git a/blog/themes/floaty.scss b/blog/themes/floaty.scss index d040105..b78f8a7 100644 --- a/blog/themes/floaty.scss +++ b/blog/themes/floaty.scss @@ -44,7 +44,11 @@ $progress-heights : (1: 134px, 6: 13px, ); -/*-- scss:rules --*/ +/*-- scss:uses --*/ +@use "glow.scss"; + +/* ------------------------------------------------------------------------- */ +/*-- scss:mixins --*/ @mixin make-floaty-hover($filter-init, $filter-final, $transform) { @@ -290,8 +294,6 @@ $progress-heights : (1: 134px, } -/* ------------------------------------------------------------------------- */ - @mixin make-bg($bg) { background: $bg; padding: 10px; @@ -355,8 +357,6 @@ $progress-heights : (1: 134px, } -/* ------------------------------------------------------------------------- */ - @mixin make-card-filter($filter, $filter-final, $transform) { .card { @@ -408,8 +408,8 @@ $progress-heights : (1: 134px, /* ------------------------------------------------------------------------- */ +/*-- scss:rules --*/ -/* Bare Minimum */ .floaty { @include make-floaty(); @@ -452,6 +452,27 @@ $progress-heights : (1: 134px, @include make-floaty-card-bg($body-color); } + /* Only for text only cards for now. + * Overwrite `margin` for larger or smaller border. + * + */ + &.glow { + + .card { + @include glow(10px); + + border: none; + + .card-body { + border-radius: 7px; + z-index: 1; + background-color: var(--bs-white); + margin: 5px; + } + } + + } + } @@ -462,5 +483,4 @@ $progress-heights : (1: 134px, --bs-tooltip-arrow-height: 1rem; --bs-tooltip-margin: 1rem; - /* map-get($spacers, 3); */ } diff --git a/blog/themes/glow.scss b/blog/themes/glow.scss new file mode 100644 index 0000000..6f2a1ce --- /dev/null +++ b/blog/themes/glow.scss @@ -0,0 +1,57 @@ +/*-- scss:rules--*/ +@keyframes glow { + 0% { + background-position: 0 0; + } + + 50% { + background-position: 100% 0; + } + + 100% { + background-position: 0 0; + } +} + +/*-- scss:mixins --*/ + +/** For adding glowing backgrounds to cards. + * + * This adds a background using psuedo-elements that should be used will allow + * a border like `rotate` that overflows into a glowing backdrop. + * + * The border is set by adding padding to the inner element. + * + * Inspired by https://www.letsbuildui.dev/articles/how-to-animate-borders-in-css/. + */ +@mixin glow($border-radius, $background: linear-gradient(45deg, + #ff595e, + #ffca3a, + #8ac926, + #1982c4, + #6a4c93, + #ff6700), $background-size: 400%, $background-animation: glow 20s linear infinite) { + + &::after, + &::before { + content: ""; + position: absolute; + top: 0; + left: 0; + bottom: 0; + right: 0; + background: $background; + background-size: $background-size; + z-index: 0; + animation: $background-animation; + width: 100%; + border-radius: $border-radius; + } + + &::after { + filter: blur(25px); + transform: translate3d(0, 0, 0); + /* For Safari */ + } + +} diff --git a/blog/themes/landing-page.scss b/blog/themes/landing-page.scss new file mode 100644 index 0000000..e49c921 --- /dev/null +++ b/blog/themes/landing-page.scss @@ -0,0 +1,475 @@ +/*-- scss:mixins --*/ + + +@mixin ascii-glow($color, $glow-size: 100px) { + color: $color; + filter: drop-shadow(0 0 3px $color) drop-shadow(0 0 100px $color); + background: url(/grid.svg); +} + + +@mixin landing-page-section($padding: map-get($spacers, 5), + $margin: map-get($spacers, 5), + $border-radius: $border-radius-xxl, + $glow: false) { + + $padding: $padding; + + color: var(--bs-white); + margin-top: $margin; + margin-bottom: $margin; + + padding: $padding; + border-radius: $border-radius; + max-width: 1200px; + + @include media-breakpoint-up(xxl) { + margin-left: auto; + margin-right: auto; + } + + @include media-breakpoint-between(lg, xxl) { + margin-right: $margin; + margin-left: $margin; + } + + @include media-breakpoint-down(lg) { + margin-left: 0.3em; + margin-right: 0.3em; + } + + h1, + h2 { + text-align: center + } + + @if $glow { + display: flex; + position: relative; + align-items: center; + justify-content: center; + } + + +} + +@mixin landing-page-section-inner($padding: map-get($spacers, 5), + $border-radius: $border-radius-xl, + $glow: false, +) { + padding: $padding; + border-radius: $border-radius; + + @if $glow { + z-index: 1; + width: 100%; + } + +} + +/*-- scss:rules --*/ +$extraColors : ("blue": $blue, + "indigo": $indigo, + "purple": $purple, + "pink": $pink, + "red": $red, + "orange": $orange, + "yellow": $yellow, + "green": $green, + "teal": $teal, + "cyan": $cyan ); + +.ascii-art { + + font-family: monospace; + font-size: 1em; + display: flex; + flex-wrap: wrap; + + .ascii-flex, + &.ascii-flex { + display: flex; + flex-wrap: wrap + } + + .ascii-art-letter { + display: grid; + grid-template-columns: repeat(98, 1ch); + /* Adjust based on max line length */ + font-family: monospace; + white-space: pre; + } + + .ascii-art-blinks { + @keyframes ascii-blinks { + 0% { + opacity: 0; + } + + 49% { + opacity: 0; + } + + 50% { + opacity: 1; + } + + 100% { + opacity: 1; + } + } + + animation: ascii-blinks 1s infinite; + } + + @each $name, $color in $extraColors { + + .ascii-art-#{$name}, + &.ascii-art-#{$name} { + @include ascii-glow($color); + } + + } +} + + +/* Container for the landing page. */ +#landing-page { + @include make-container(0px); + margin: 0px; + + code { + background: var(--bs-black); + } + + .landing-page-row { + @include make-row(0px); + + .landing-page-left { + @include make-col(6); + } + + .landing-page-right { + @include make-col(6); + } + } + + + #acederberg-io { + padding: 3em; + border: 10px solid var(--bs-gray-900); + border-radius: 2em; + + box-shadow: 0 0 20px var(--bs-yellow), 0 0 20px inset var(--bs-yellow); + } + + + #landing-page-banner { + @include make-row(); + @include landing-page-section(); + margin: 0px; + + $padding: map-get($spacers, 5); + padding-left: $padding; + padding-right: $padding; + + #landing-page-banner-content { + @include make-container(0px); + background: radial-gradient(rgba(255, 212, 59, 0.07), transparent 75%); + + #landing-page-banner-title { + @include make-row(); + font-size: 1em; + font-family: monospace; + font-weight: bolder; + margin: 0px; + + h1 { + $color: lch(65% 85 35); + /* filter: drop-shadow(0 0 3px var(--bs-pink)) drop-shadow(0 0 10px var(--bs-pink)); */ + color: var(--bs-black); + filter: drop-shadow(0 0 1px $color) drop-shadow(0 0 1px $color); + text-align: center; + } + + h2 { + color: var(--bs-orange); + + /* $color: var(--bs-orange); */ + /* filter: drop-shadow(0 0 1px $color) drop-shadow(0 0 1px $color); */ + filter: drop-shadow(0 0 10px var(--bs-black)) drop-shadow(0 0 10px var(--bs-black)); + border: none; + text-align: center; + } + + #landing-page-links { + display: flex; + width: 100%; + + .link-item { + margin: auto; + } + } + + /* #landing-page-banner-title-left { */ + /* @include make-col(0); */ + /* } */ + /**/ + /* #landing-page-banner-title-right { */ + /* @include make-col(12); */ + /* } */ + } + } + } + + /* This should include listings, etc. */ + #landing-page-navigation { + @include make-row(0px); + + /* background: var(--bs-black); */ + /* border: 2px solid white; */ + + #landing-page-navigation-content { + width: 100%; + + /* $padding: map-get($spacers, 5); */ + /* padding-left: $padding; */ + /* padding-right: $padding; */ + + margin: map-get($spacers, 5); + + .navigation-directory { + /* background: red; */ + list-style: none; + + font-size: 0.7em; + font-family: monospace; + + /** Will contain ascii art. + */ + .navigation-item { + text-align: center; + + /* border: 2px solid var(--bs-teal); */ + /* border-radius: $border-radius-xl; */ + + $margin: map-get($spacers, 3); + margin-top: $margin; + margin-bottom: $margin; + + $padding: map-get($spacers, 3); + padding-top: $padding; + padding-bottom: $padding; + + color: var(--bs-teal); + filter: drop-shadow(0 0 1px var(--bs-teal)) drop-shadow(0 0 20px var(--bs-teal)); + + &.hover, + &:hover { + color: var(--bs-teal); + filter: none; + cursor: pointer; + } + } + } + } + } + + /* This is the about sections */ + #landing-page-about { + @include landing-page-section(); + + $color: var(--bs-teal); + background: url(daimond.svg), radial-gradient(var(--bs-black), var(--bs-gray-900) 110%); + backdrop-filter: blur(5px); + + #landing-page-about-content { + @include landing-page-section-inner(); + + border: 3px solid $color; + box-shadow: 0 0 15px $color, inset 0 0 15px $color; + + #about { + max-width: 800px; + margin: auto; + + p { + color: var(--bs-gray-200); + } + } + } + + } + + #landing-page-posts { + $appearent-border-width: 0.3em; + + @include landing-page-section($padding: $appearent-border-width, $glow: true); + + + &::after { + content: ""; + position: absolute; + inset: 0; + background: url('https://lightningcss.dev/metal.d330902c.webp'); + /* filter: blur(25px); */ + z-index: 0; + } + + background: url('https://lightningcss.dev/metal.d330902c.webp'); + box-shadow: 0 0 10px inset var(--bs-black); + /* background: red; */ + z-index: 1; + + #landing-page-posts-content { + + background: rgba(0, 0, 0, 0.4); + $padding: calc(map-get($spacers, 5) - $appearent-border-width); + @include landing-page-section-inner($padding: $padding, $border-radius: 2.01rem, $glow: true); + } + + .card { + --bs-card-bg: rgba(0, 0, 0, 0.5); + color: var(--bs-white); + border-radius: 1em; + padding: 1em; + } + } + + #landing-page-projects { + $appearent-border-width: 0.1em; + + @include landing-page-section($padding: $appearent-border-width, $glow: true); + @include glow($border-radius-xxl); + + /* display: flex; */ + /* position: relative; */ + /* align-items: center; */ + /* justify-content: center; */ + + + #landing-page-projects-content { + @include landing-page-section-inner($padding: calc(map-get($spacers, 5) - $appearent-border-width), + $border-radius: 2.01rem, + $glow: true, + ); + /* z-index: 1; */ + /* width: 100%; */ + + @property --landing-page-projects-content-angle {} + + $color-primary: #111; + $color-secondary: #181818; + + background: url(grid.svg), + conic-gradient($color-secondary, + $color-secondary 45deg, + + $color-primary 60deg, + $color-primary 105deg, + + $color-secondary 120deg, + $color-secondary 165deg, + + $color-primary 180deg, + $color-primary 225deg, + + $color-secondary 240deg, + $color-secondary 285deg, + + $color-primary 300deg, + $color-primary 345deg, + $color-secondary 360deg); + } + + .card { + --bs-card-bg: rgba(0, 0, 0, 0.2); + color: var(--bs-white); + border-radius: 1em; + padding: 1em; + } + + } + + #landing-page-resume { + @include landing-page-section(); + + background: rgba(255, 255, 255, 0.1); + backdrop-filter: blur(5px); + border: 1px solid var(--bs-white); + + #landing-page-resume-content { + @include landing-page-section-inner(); + + } + + .card { + border-radius: $border-radius-xl; + background: rgba(0, 0, 0, 0.5); + + $padding: map-get($spacers, 5); + padding-top: $padding; + padding-bottom: $padding; + + .card-img-top i { + font-size: 4rem; + } + + .card-title { + font-size: 1em; + color: white; + } + + &.hover, + &:hover { + background: rgba(0, 0, 0, 0.8); + border: black; + cursor: pointer; + } + } + } + + /* + @property --landing-page-glow-angle { + syntax: ""; + initial-value: 0deg; + inherits: false; + } + + @keyframes landing-page-glow-rotate { + to { + ---landing-page-glow-angle: 360deg; + } + } + + padding: map-get($spacers, 5); + margin: map-get($spacers, 5); + + .card { + --landing-page-glow-gradient-primary: var(--bs-blue); + --landing-page-glow-gradient-secondary: var(--bs-green); + --landing-page-glow-gradient-tertiary: var(--bs-orange); + --landing-page-glow-angle: 0deg; + + $gradient: conic-gradient(from var(--landing-page-glow-angle), + var(--landing-page-glow-gradient-primary) 55deg, + var(--landing-page-glow-gradient-secondary) 89deg, + var(--landing-page-glow-gradient-tertiary) 144deg, + var(--landing-page-glow-gradient-primary) 350deg); + + @include glow(10px, $gradient, 100%, ); + + border: none; + + .card-body { + border-radius: 7px; + z-index: 1; + background-color: var(--bs-white); + margin: 5px; + } + + } + + } + */ +} diff --git a/docker/docker.sh b/docker/docker.sh index 96f7853..b4cb67e 100644 --- a/docker/docker.sh +++ b/docker/docker.sh @@ -4,11 +4,6 @@ if [[ ! $ACEDERBERG_IO_VENV ]]; then export ACEDERBERG_IO_VENV="/home/docker/.ve if [[ ! $ACEDERBERG_IO_WORKDIR ]]; then export ACEDERBERG_IO_WORKDIR="/home/docker/app"; fi if [[ ! $ACEDERBERG_IO_BUILD_LOG ]]; then export ACEDERBERG_IO_BUILD_LOG="/dev/null"; fi -# if [[ ! -f /home/docker/.run-uuid ]]; then -# python -c 'import secrets; print(secrets.token_urlsafe())' > /home/docker/.run-uuid -# fi -# export ACEDERBERG_IO_RUN_UUID=$( cat .run_uuid ) - export PATH="$PATH:/home/docker/.local/bin" mkdir --parents $ACEDERBERG_IO_VENV diff --git a/example.qmd b/example.qmd deleted file mode 100644 index ec794c2..0000000 --- a/example.qmd +++ /dev/null @@ -1,9 +0,0 @@ ---- -title: NLTK Notes -- ---- - -```{python} -some invalid python code -``` - diff --git a/package-lock.json b/package-lock.json index 4a8c482..5f24483 100644 --- a/package-lock.json +++ b/package-lock.json @@ -8,6 +8,9 @@ "name": "blog", "version": "0.2.1", "license": "ISC", + "dependencies": { + "@mermaid-js/mermaid-cli": "^11.4.2" + }, "devDependencies": { "prettier": "^3.3.3", "prettier-plugin-jinja-template": "^2.0.0", @@ -19,6 +22,189 @@ "typescript": "^5.7.3" } }, + "node_modules/@alloc/quick-lru": { + "version": "5.2.0", + "resolved": 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-6,8 +6,10 @@ authors = ["Adrian Cederberg "] readme = "README.md" packages = [{ include = "acederbergio" }] -# NOTE: These are dependencies required to make the scripts run [tool.poetry.dependencies] +# NOTE: These are dependencies required to make the scripts run + +motor = "^3.6.0" python = "^3.11" pyyaml = "^6.0.2" panflute = "^2.3.1" @@ -15,28 +17,34 @@ toml = "^0.10.2" meta-tags-parser = "^1.3.0" typer = "^0.12.5" pydantic = "^2.9.2" -motor = "^3.6.0" gitpython = "^3.1.43" yaml-settings-pydantic = "^2.3.2" fastapi = "^0.115.5" uvicorn = { extras = ["standard"], version = "^0.32.1" } - -# NOTE: These are dependencies required to make the notebooks work. jinja2 = "^3.1.5" nltk = "^3.9.1" rake-nltk = "^1.0.6" pypdf = "^5.2.0" +s3cmd = "^2.4.0" + [tool.poetry.group.quarto.dependencies] +# NOTE: These are dependencies required to make the notebooks work. + scikit-learn = "^1.5.1" numpy = "^2.0.0" -jupyter = "^1.0.0" jupyter-cache = "^1.0.0" +jupyter-client = "^8.6.3" +jupyter = 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