sclet 0.0.6

BatchRemover() for batch correction (2025-03-20, Thu)
FindVariableFeatures() and VariableFeatures() supports method = 'scran' (2025-03-17, Mon)

sclet 0.0.5

Slingshot supports (2025-03-12, Wed)
- genecurve_plot
- RunSlingshot
- lineage_plot
- pseudo_heatmap
- pseudo_plot

sclet 0.0.4

re-export scuttle::logNormCounts() and scuttle::perCellQCMetrics(() (2024-10-08, Tue)
Import 'Matrix' for calculate stats of SparseMatrix (2024-10-07, Mon)
re-export aplot::plot_list() (2024-10-06, Sun)

sclet 0.0.3

Adding cell-cell communication module. (2024-10-06, Sun)
- runCellChat() wrapper function for running CellChat.
gene_summary_table() to add gene summary information to marker gene table (2024-10-02, Wed)

sclet 0.0.2

FindMarkers() and FindAllMarkers() (2024-10-02, Wed)
remove vignettes and host online book (2024-10-01, Tue)
- https://yulab-smu.top/sclet
re-export scater::plotColData()
QCMetrics() function to add seurat-like QC metrics ('nFeature_RNA' and 'nCount_RNA' to 'SingleCellExperiment' object)

sclet 0.0.1

Seurat-like functions for SingleCellExperiment (2024-09-20, Fri)
- Read10X()
- PercentageFeatureSet()
- VlnPlot()
- FeatureScatter()
- subset()
- NormalizeData()
- FindVariableFeatures()
- VariableFeatures()
- VariableFeaturePlot()
- ScaleData()
- ElbowPlot()
- FindNeighbors()
- FindClusters()
- Idents()
- RenameIdents()
- RunUMAP()
re-export:
- SummarizedExperiment::colData()
- SummarizedExperiment::rowData()
- SummarizedExperiment::assay()
- scater::runPCA()