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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export("colData<-")
export("rowData<-")
export(BatchRemover)
export(ElbowPlot)
export(FeatureScatter)
export(FindAllMarkers)
export(FindClusters)
export(FindMarkers)
export(FindNeighbors)
export(FindVariableFeatures)
export(Idents)
export(NormalizeData)
export(PercentageFeatureSet)
export(QCMetrics)
export(Read10X)
export(RenameIdents)
export(RunSlingshot)
export(RunUMAP)
export(ScaleData)
export(VariableFeaturePlot)
export(VariableFeatures)
export(VlnPlot)
export(assay)
export(colData)
export(gene_summary_table)
export(genecurve_plot)
export(lineage_plot)
export(logNormCounts)
export(perCellQCMetrics)
export(plotColData)
export(plot_list)
export(pseudo_heatmap)
export(pseudo_plot)
export(rowData)
export(runCellChat)
export(runPCA)
export(subset_cell)
export(subset_feature)
import(SingleCellExperiment)
import(dplyr)
import(ggplot2)
import(ggsc)
importFrom(DropletUtils,read10xCounts)
importFrom(Matrix,rowSums)
importFrom(SingleCellExperiment,"colLabels<-")
importFrom(SingleCellExperiment,'reducedDim<-')
importFrom(SingleCellExperiment,colData)
importFrom(SingleCellExperiment,colLabels)
importFrom(SingleCellExperiment,counts)
importFrom(SingleCellExperiment,logcounts)
importFrom(SingleCellExperiment,reducedDim)
importFrom(SingleCellExperiment,reducedDims)
importFrom(SummarizedExperiment,'assay<-')
importFrom(SummarizedExperiment,'colData<-')
importFrom(SummarizedExperiment,'rowData<-')
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assayNames)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(aplot,plot_list)
importFrom(clusterProfiler,bitr)
importFrom(dplyr,filter)
importFrom(fanyi,gene_summary)
importFrom(ggplot2,aes)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,geom_jitter)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_violin)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_color_viridis_c)
importFrom(ggplot2,scale_x_log10)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_classic)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(ggrepel,geom_text_repel)
importFrom(graphics,lines)
importFrom(graphics,plot)
importFrom(igraph,cluster_louvain)
importFrom(methods,as)
importFrom(methods,is)
importFrom(methods,setMethod)
importFrom(rlang,.data)
importFrom(rlang,enquo)
importFrom(scater,plotColData)
importFrom(scater,runPCA)
importFrom(scater,runUMAP)
importFrom(scran,buildSNNGraph)
importFrom(scuttle,logNormCounts)
importFrom(scuttle,perCellQCMetrics)
importFrom(scuttle,uniquifyFeatureNames)
importFrom(stats,ave)
importFrom(stats,loess)
importFrom(stats,mad)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,predict)
importFrom(stats,quantile)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(tidyr,pivot_longer)
importFrom(tinytable,group_tt)
importFrom(tinytable,save_tt)
importFrom(tinytable,style_tt)
importFrom(tinytable,tt)
importFrom(yulab.utils,get_fun_from_pkg)
importFrom(yulab.utils,install_zip_gh)
importFrom(yulab.utils,is.installed)
importFrom(yulab.utils,o)
importFrom(yulab.utils,show_in_excel)