diff --git a/bin/vfvs_pp_prepare_dockingposes.sh b/bin/vfvs_pp_prepare_dockingposes.sh
index cc31af4..a32a4e7 100755
--- a/bin/vfvs_pp_prepare_dockingposes.sh
+++ b/bin/vfvs_pp_prepare_dockingposes.sh
@@ -5,7 +5,7 @@ usage="vfvs_pp_prepare_docking_poses.sh <results folder> <folder_format> <rankin
 Possible folder formats (for the results as well as pdbqt folders):
     sub: for VFVS version < 8.0
     tar: vfvs version >= 8.0
-    meta_tranch: Use this format if the output files are stored on the tranch level. This is the case when the setting 'outputfiles_level' was set to 'tranch' in the control file during the workflow.
+    meta_tranche: Use this format if the output files are stored on the tranche level. This is the case when the setting 'outputfiles_level' was set to 'tranche' in the control file during the workflow.
     meta_collection: Use this format if the output files are stored on the collection level. This is the case when the setting 'outputfiles_level' was set to 'collection' in the control file during the workflow.
 
 The <ranking file> needs to contain the collection in the first column and the compound name in the second column.
@@ -73,65 +73,65 @@ while read -r line; do
     collection="${array[0]}"
     #molecule=${array[1]/_*} # removing replicas
     molecule=${array[1]}
-    tranch=${collection/_*}
+    tranche=${collection/_*}
     collection_no=${collection/*_}
 #    name2_padded=$(printf "%05.f" ${collection:5})
     echo -e "\n *** Preparing structure ${molecule} ***"
-    if [ -d ${output_folder}/${tranch}/${collection_no}/${molecule} ]; then
+    if [ -d ${output_folder}/${tranche}/${collection_no}/${molecule} ]; then
         echo " * The directory for this ligand already exists. Skipping this ligand."
         continue
     fi
-    mkdir -p ${output_folder}/${tranch}/${collection_no}/${molecule}
-    cd ${output_folder}/${tranch}/${collection_no}/${molecule}
+    mkdir -p ${output_folder}/${tranche}/${collection_no}/${molecule}
+    cd ${output_folder}/${tranche}/${collection_no}/${molecule}
 
     if [ "${format}" == "tar" ]; then
-        if ! tar -xvf ../../../../${results_folder}/${tranch}.tar --wildcards "${tranch}/${collection_no}*tar"; then
-            if ! tar -xvf ../../../../${results_folder/commplete/incomplete}/${tranch}.tar --wildcards "${tranch}/${collection_no}*tar"; then
+        if ! tar -xvf ../../../../${results_folder}/${tranche}.tar --wildcards "${tranche}/${collection_no}*tar"; then
+            if ! tar -xvf ../../../../${results_folder/complete/incomplete}/${tranche}.tar --wildcards "${tranche}/${collection_no}*tar"; then
                 echo " * Error, skipping this ligand"
                 cd ../../../../
                 continue
             fi
         fi
-        if ! tar -xvf ${tranch}/${collection_no}.gz.tar --wildcards "${molecule}*"; then
+        if ! tar -xvf ${tranche}/${collection_no}.gz.tar --wildcards "${molecule}*"; then
             echo " * Error, skipping this ligand"
             cd ../../../../
             continue
         fi
     elif [ "${format}" == "sub" ]; then
-        if ! tar -xvf ../../../../${results_folder}/${tranch}/${collection_no}.gz.tar --wildcards "${molecule}_replica*"; then
-            if ! tar -xvf ../../../../${results_folder/commplete/incomplete}/${tranch}/${collection_no}.gz.tar --wildcards "${molecule}_replica*"; then
+        if ! tar -xvf ../../../../${results_folder}/${tranche}/${collection_no}.gz.tar --wildcards "${molecule}_replica*"; then
+            if ! tar -xvf ../../../../${results_folder/complete/incomplete}/${tranche}/${collection_no}.gz.tar --wildcards "${molecule}_replica*"; then
                 echo " * Error, skipping this ligand"
                 cd ../../../../
                 continue
             fi
         fi
-    elif [ "${format}" == "meta_tranch" ]; then
-        metatranch=${tranch:0:2}
-        if ! tar -xvf ../../../../${results_folder}/${metatranch}/${tranch}.tar --wildcards "${tranch}/${collection_no}.tar.gz"; then
-            if ! tar -xvf ../../../../${results_folder/commplete/incomplete}/${metatranch}/${tranch}.tar --wildcards "${tranch}/${collection_no}.tar.gz"; then
+    elif [ "${format}" == "meta_tranche" ]; then
+        metatranche=${tranche:0:2}
+        if ! tar -xvf ../../../../${results_folder}/${metatranche}/${tranche}.tar --wildcards "${tranche}/${collection_no}.tar.gz"; then
+            if ! tar -xvf ../../../../${results_folder/complete/incomplete}/${metatranche}/${tranche}.tar --wildcards "${tranche}/${collection_no}.tar.gz"; then
                 echo " * Error, skipping this ligand"
                 cd ../../../../
                 continue
             fi
         fi
-        if ! tar -xvf ${tranch}/${collection_no}.tar.gz --wildcards "${collection_no}/${molecule}_replica*"; then
+        if ! tar -xvf ${tranche}/${collection_no}.tar.gz --wildcards "${collection_no}/${molecule}_replica*"; then
             echo " * Error, skipping this ligand"
             cd ../../../../
             continue
         fi
         mv ${collection_no}/*pdbqt ./
     elif [ "${format}" == "meta_collection" ]; then
-        metatranch=${tranch:0:2}
-        if ! cp ../../../../${results_folder}/${metatranch}/${tranch}/${collection_no}.tar.gz ./; then
-            if ! cp ../../../..${results_folder/commplete/incomplete}/${metatranch}/${tranch}/${collection_no}.tar.gz ./; then
+        metatranche=${tranche:0:2}
+        if ! cp ../../../../${results_folder}/${metatranche}/${tranche}/${collection_no}.tar.gz ./; then
+            if ! cp ../../../..${results_folder/complete/incomplete}/${metatranche}/${tranche}/${collection_no}.tar.gz ./; then
                 echo " * Error, skipping this ligand"
                 cd ../../../../
                 continue
             fi
         fi
-        mkdir ${tranch}/
-        mv ${collection_no}.tar.gz ${tranch}/
-        if ! tar -xvf ${tranch}/${collection_no}.tar.gz --wildcards "${collection_no}/${molecule}_replica*"; then
+        mkdir ${tranche}/
+        mv ${collection_no}.tar.gz ${tranche}/
+        if ! tar -xvf ${tranche}/${collection_no}.tar.gz --wildcards "${collection_no}/${molecule}_replica*"; then
             echo " * Error, skipping this ligand"
             cd ../../../../
             continue
@@ -150,13 +150,13 @@ while read -r line; do
         replica=${file/*_}
         replica=${replica/.*}
         mkdir -p ${replica}
-        mv $file ${replica}/${tranch}_${collection_no}_${file}
+        mv $file ${replica}/${tranche}_${collection_no}_${file}
     done
     if [[ "${format}" == "tar" ]] || [[ "${format}" == "sub" ]]; then
         rm *tar || true        
     fi
 
-    rm -r ${tranch}*
+    rm -r ${tranche}*
     for replica_folder in $(ls -d replica*); do
         cd ${replica_folder}
         mv *pdbqt docking.out.pdbqt
@@ -164,7 +164,7 @@ while read -r line; do
         energy=$(obenergy "${molecule}.rank-1.pdb" | tail -n 1 | awk '{print $4}')
         obabel -m -ipdbqt docking.out.pdbqt -osdf -O "${molecule}.rank-.sdf"
         obabel -ipdbqt docking.out.pdbqt -osdf -O "${molecule}.rank-all.sdf"
-        echo "${tranch}_${collection} ${molecule} ${replica_folder} ${energy}" >> "${molecule}.rank-1.energy"
+        echo "${tranche}_${collection} ${molecule} ${replica_folder} ${energy}" >> "${molecule}.rank-1.energy"
         echo "${molecule} ${energy} ${replica_folder}" >> ../../../../../${ranking_file}.energies
         cd ..
     done
diff --git a/bin/vfvs_prepare_newcollections.sh b/bin/vfvs_prepare_newcollections.sh
index 264da61..347130b 100755
--- a/bin/vfvs_prepare_newcollections.sh
+++ b/bin/vfvs_prepare_newcollections.sh
@@ -68,7 +68,7 @@ while read -r line; do
     read -r -a array <<< "$line"
     old_collection=${collection}
     old_tranche=${tranche}
-    old_eollection_no=${collection_no}
+    old_collection_no=${collection_no}
 
     collection_subno="1"
     collection_subno_padded="0001"
@@ -83,8 +83,8 @@ while read -r line; do
     else
         collection="${array[0]}"
         ligand="${array[1]}"
-        metatranche="${tranche:0:2}"
         tranche="${collection/_*}"
+        metatranche="${tranche:0:2}"
         collection_no=${collection/*_}
         #collection_no="$(printf "%05.f" "${collection_no}")"
     fi
@@ -146,7 +146,7 @@ while read -r line; do
     elif [ "${pdbqt_folder_format}" == "hash_metatranche" ]; then
         if [ "${new_collection}" == "true" ]; then
             echo " * Extracting collection ${collection}"
-            rm -r ${old_eollection_no} &>/dev/null || true
+            rm -r ${old_collection_no} &>/dev/null || true
             tar -xzf ../${pdbqt_input_folder}/${collection//smi/pdbqt}.tar.gz || true
         fi
         cp ${collection_no//smi/pdbqt}/${ligand}.pdbqt ../${output_folder}.tmp2/${collection_new}/${ligand}.pdbqt || true