set user to root for bcftools

Author: vrohnie

delly_0.7.9/delly_0.7.9.sh

@@ -10,12 +10,12 @@ timing="$8"
 
 DELLY=/bin/delly_v0.7.9_parallel_linux_x86_64bit
 
-log_eval $PWD "docker run --name=delly_0.7.9 -v $(pwd)/:$(pwd) -w $outdir vrohnie/delly:v0.7.9 $DELLY call \
+log_eval $PWD "docker run --user 0:0 --name=delly_0.7.9 -v $(pwd)/:$(pwd) -w $outdir vrohnie/delly:v0.7.9 $DELLY call \
   -g $fasta \
   -o $outdir/delly_0.7.9.bcf \
   $bam"
 
-log_eval $PWD "docker run --rm -v $(pwd)/:$(pwd) -w $outdir biocontainers/bcftools:v1.9-1-deb_cv1 \
+log_eval $PWD "docker run --user 0:0 --rm -v $(pwd)/:$(pwd) -w $outdir biocontainers/bcftools:v1.9-1-deb_cv1 \
   bcftools convert \
   -O v -o $outdir/delly_0.7.9.vcf \
   $outdir/delly_0.7.9.bcf"