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<li class="toctree-l1"><a class="reference internal" href="tlseparation.html">tlseparation package</a></li>
<li class="toctree-l1 current"><a class="current reference internal" href="#">CHANGELOG</a><ul>
<li class="toctree-l2"><a class="reference internal" href="#v1-3-2">v1.3.2</a></li>
<li class="toctree-l2"><a class="reference internal" href="#v1-3-1">v1.3.1</a></li>
<li class="toctree-l2"><a class="reference internal" href="#v1-3">v1.3</a></li>
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<li class="toctree-l2"><a class="reference internal" href="#v1-2-2-4">v1.2.2.4</a></li>
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<div class="section" id="changelog">
<h1>CHANGELOG<a class="headerlink" href="#changelog" title="Permalink to this headline">¶</a></h1>
<div class="section" id="v1-3-2">
<h2>v1.3.2<a class="headerlink" href="#v1-3-2" title="Permalink to this headline">¶</a></h2>
<ul class="simple">
<li>Added a new clustering module containing a ‘connected_component’ approach.</li>
<li>Added two cluster based filtering to be used along ‘clustering.connected_component’.</li>
<li>Added new script module for automated post-processing.</li>
</ul>
</div>
<div class="section" id="v1-3-1">
<h2>v1.3.1<a class="headerlink" href="#v1-3-1" title="Permalink to this headline">¶</a></h2>
<ul class="simple">
<li>Bug fix in ‘generic_tree’ script. Now ‘path_detect_frequency’ also uses the voxel size defined in the main script.</li>
</ul>
</div>
<div class="section" id="v1-3">
<h2>v1.3<a class="headerlink" href="#v1-3" title="Permalink to this headline">¶</a></h2>
<ul class="simple">
<li>Major bump in version to point out operational status after series of minor improvements.</li>
</ul>
</div>
<div class="section" id="v1-2-2-7">
<h2>v1.2.2.7<a class="headerlink" href="#v1-2-2-7" title="Permalink to this headline">¶</a></h2>
<ul class="simple">
<li>Minor changes mainly to update for a new stable version.</li>
</ul>
</div>
<div class="section" id="v1-2-2-6">
<h2>v1.2.2.6<a class="headerlink" href="#v1-2-2-6" title="Permalink to this headline">¶</a></h2>
<ul class="simple">
<li>Removed ‘future_code’ from the package. These codes will be kept aside until they are ready to be added back into the package.</li>
<li>Completely removed all references for <em>HDBSCAN</em> which caused import errors.</li>
<li>Renamed <em>automated_separation.large_tree_5</em> to <em>automated_separation.generic_tree</em>.</li>
</ul>
</div>
<div class="section" id="v1-2-2-5">
<h2>v1.2.2.5<a class="headerlink" href="#v1-2-2-5" title="Permalink to this headline">¶</a></h2>
<ul class="simple">
<li>Changed <em>remove_duplicates</em> function to allow indices output.</li>
<li>Temporarily removed <em>continuous_clustering</em> module until further improvements.</li>
<li>Replaced HDBSCAN for DBSCAN in the entire package. This aims to make installation simpler and avoid incompatibilities.</li>
<li>Set full_matrices to False in <em>svd_evals</em> to improve processing efficiency (reduced processing time and memory usage).</li>
<li>Added new autometed separation script <em>large_tree_5</em>.</li>
<li>Removed old automated separation scripts: <em>large_tree_1</em> and <em>large_tree_2</em>.</li>
<li>Added new filters: <em>plane_filter</em>, <em>cluster_filter</em> and <em>feature_filter</em>.</li>
<li>Added new path detection script, <em>path_detect_frequency</em>.</li>
</ul>
</div>
<div class="section" id="v1-2-2-4">
<h2>v1.2.2.4<a class="headerlink" href="#v1-2-2-4" title="Permalink to this headline">¶</a></h2>
<ul class="simple">
<li>Corrected automated calculation of parameter cf_rad in <em>large_tree_3</em>.</li>
<li>Added new gmm_nclasses parameter to <em>large_tree_3</em>.</li>
</ul>
</div>
<div class="section" id="v1-2-2-3">
<h2>v1.2.2.3<a class="headerlink" href="#v1-2-2-3" title="Permalink to this headline">¶</a></h2>
<ul class="simple">
<li>Changed <em>voxel_path_detect</em> parameters to speed up processing.</li>
<li>Added maximum iterations to <em>detect_main_pathways</em> to avoid infinite loops or long processing times.</li>
</ul>
</div>
<div class="section" id="v1-2-2-2">
<h2>v1.2.2.2<a class="headerlink" href="#v1-2-2-2" title="Permalink to this headline">¶</a></h2>
<ul class="simple">
<li>Bug fixes in <em>automated_separation.large_tree_3</em>.</li>
</ul>
</div>
<div class="section" id="v1-2-2-1">
<h2>v1.2.2.1<a class="headerlink" href="#v1-2-2-1" title="Permalink to this headline">¶</a></h2>
<ul class="simple">
<li>Fixed base point index in <em>continuity_filter</em>.</li>
<li>Added new voxelization wrapped around <em>detect_main_pathways</em> that aims to speed up the processing.</li>
<li>Added new <em>automated_separation</em> script, <em>large_tree_3</em>.</li>
</ul>
</div>
<div class="section" id="v1-2-1-7">
<h2>v1.2.1.7<a class="headerlink" href="#v1-2-1-7" title="Permalink to this headline">¶</a></h2>
<ul class="simple">
<li>Changed clustering in filtering.cluster_filter from DBSCAN to HDBSCAN in order to improve memory efficiency.</li>
<li>Minor adjustments in automated_separation.large_tree_1.</li>
<li>Created new knn optimization function to detect knn values automatically.</li>
<li>Added block processing to <em>subset_nbrs</em>.e</li>
<li>Minor fixes for improvement on continuity_filter stability.</li>
<li>Added new automated separation script, automated_separation.large_tree_2.</li>
<li>Corrected class_filter application on large_tree_1 and large_tree_2.</li>
<li>Fixed class_filter input target values (finished changing valid values from 1 or 2 to 0 or 1).</li>
<li>Added a new final filtering step to large_tree_2 using detect_main_pathways.</li>
</ul>
</div>
<div class="section" id="v1-2-1-6">
<h2>v1.2.1.6<a class="headerlink" href="#v1-2-1-6" title="Permalink to this headline">¶</a></h2>
<ul class="simple">
<li>Minor fixes.</li>
</ul>
</div>
<div class="section" id="v1-2-1-5">
<h2>v1.2.1.5<a class="headerlink" href="#v1-2-1-5" title="Permalink to this headline">¶</a></h2>
<ul class="simple">
<li>Added verbose option to some modules.</li>
<li>Changed docstrings style to numpydoc.</li>
<li>Added default class_ref DataFrame as a built-in object. User now has the option to use this new default or continue to load a .csv file.</li>
<li>Added voxels.py module to create voxels from point clouds.</li>
<li>Added voxelization step in automated_separation.large_tree_1 to improve performance in path_detection.</li>
</ul>
</div>
<div class="section" id="v1-2-1-4">
<h2>v1.2.1.4<a class="headerlink" href="#v1-2-1-4" title="Permalink to this headline">¶</a></h2>
<ul class="simple">
<li>Fixed imports. Now, to access any low level function, one has to go through the proper module hierarchy.</li>
</ul>
</div>
<div class="section" id="v1-2-1-3">
<h2>v1.2.1.3<a class="headerlink" href="#v1-2-1-3" title="Permalink to this headline">¶</a></h2>
<ul class="simple">
<li>Changed approach of relative import. Removed all sys.path.append statements and adopted double dots (..) for parent folder imports.</li>
</ul>
</div>
<div class="section" id="v1-2-1-2">
<h2>v1.2.1.2<a class="headerlink" href="#v1-2-1-2" title="Permalink to this headline">¶</a></h2>
<ul class="simple">
<li>Fixed bug in classification.__init__.py failing to import <em>wlseparate_ref</em> as this function no longer exists;</li>
<li>Updated documentation strings for Sphinx;</li>
</ul>
</div>
<div class="section" id="v1-2-1-1">
<h2>v1.2.1.1<a class="headerlink" href="#v1-2-1-1" title="Permalink to this headline">¶</a></h2>
<p>This versions has enough important modifications to get a new subversion number, starting the 1.2 phase.</p>
<p>Some of the changes included in this version are:</p>
<ul class="simple">
<li>Changed <em>geodescriptors</em> function name to <em>knn_features</em>;</li>
<li>Updated version number in all files and setup.py;</li>
<li>Changed <em>point_features.eigen</em> (now called knn_evals) name to accommodate for radius and knn options;</li>
<li>Merged <em>array_majority</em> and <em>array_majority_rad</em> into the same function. Use kwargs to make it easier to parse arguments;</li>
<li>Merged <em>class_filter</em> and <em>class_filter_rad</em> into the same function. Use kwargs to make it easier to parse arguments;</li>
<li>Changed <em>point_compare</em> module name to <em>data_utils</em>;</li>
<li>Revised version of <em>path_detection</em>;</li>
<li>Changed new output configuration to <em>wlseparate_abs</em> and <em>wlseparate_ref_voting</em>;</li>
<li>Removed <em>wlseparate_ref</em> as it’s redundant. Same function can be run by using a single ‘knn’ parameter value in <em>wlseparate_ref_voting</em>;</li>
<li>Changed <em>filtering</em> outputs. Now all functions (except for continuity_filter) output arrays of indices instead of points coordinates.;</li>
<li>Revised documentation for the whole package. Now, all docstrings are compatible with Sphinx;</li>
</ul>
</div>
<div class="section" id="v1-1-4">
<h2>v1.1.4<a class="headerlink" href="#v1-1-4" title="Permalink to this headline">¶</a></h2>
<p>Corrected list of required packages.</p>
</div>
<div class="section" id="v1-1-3">
<h2>v1.1.3<a class="headerlink" href="#v1-1-3" title="Permalink to this headline">¶</a></h2>
<p>Added new option for automated separation (auto_separation_2).
Renamed old separation.py to auto_separation_1.py.
Added classificaition probability output to gmm.py.
Added classification probability filter to separation. Now all points below some probability threshold will be left unclassified.
Added new wlseparate method to auto_separation_2, based on a voting scheme.</p>
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