Calc contamination breaks if marker name contains a hyphen.

[fame2827]

I have a gene in my data set named "HLA-DQB2", when I run calcContamination I get the error: Element HLA-DQB2 doesn't exist from:

Statial/R/Statial.R

Lines 365 to 367 in c695def

	rfData <- singleCellData |>
	dplyr::select(cellType, all_of(markers)) |>
	dplyr::mutate(dplyr::across(any_of(markers), function(x) ifelse(is.nan(x) | is.na(x), 0, x)))

It seems somewhere in the preProcessing function the name changes from "HLA-DQB2" to "HLA.DQB2" and therefore can't be selected by dplyr.