diff --git a/_cite/.cache/cache.db b/_cite/.cache/cache.db index 4967c19f..fa04142a 100644 Binary files a/_cite/.cache/cache.db and b/_cite/.cache/cache.db differ diff --git a/_data/citations.yaml b/_data/citations.yaml index cf1b500f..62e59ec5 100644 --- a/_data/citations.yaml +++ b/_data/citations.yaml @@ -600,6 +600,70 @@ buttons: - type: pdf link: pdf/Fecho_2023.pdf +- id: doi:10.37044/osf.io/8km9j + title: Improving Bioschemas creation and community adoption through process improvements, + tool development, and advancing compliance to FAIR standards + authors: + - Alban Gaignard + - Ginger Tsueng + - "Ivan Mi\u010Deti\u0107" + - Leyla Jael Castro + - Nick Juty + publisher: Center for Open Science + date: '2024-02-07' + link: https://doi.org/g9whrz + orcid: 0000-0001-9536-9115 + ginger-tsueng-list: true + plugin: orcid.py + file: orcid.yaml +- id: doi:10.37044/osf.io/yxunp + title: Bioschemas Resource Index for Chem and Plants + authors: + - Daniel Arend + - Alessio Del Conte + - Manuel Feser + - Yojana Gadiya + - Alban Gaignard + - Leyla Jael Castro + - "Ivan Mi\u010Deti\u0107" + - Sebastien Moretti + - Steffen Neumann + - Noura Rayya + - Ginger Tsueng + - Egon Willighagen + - Ulrike Wittig + publisher: Center for Open Science + date: '2024-01-30' + link: https://doi.org/g9whr3 + orcid: 0000-0001-9536-9115 + ginger-tsueng-list: true + plugin: orcid.py + file: orcid.yaml +- id: doi:10.37044/osf.io/q4zgx + title: Infrastructure for synthetic health data + authors: + - "N\xFAria Queralt-Rosinach" + - Basel Alshaikhdeeb + - Luca Bolzani + - Muhammad Shoaib + - Marcos Casado Barbero + - "Sergi Aguil\xF3-Castillo" + - Davide Cirillo + - Leyla Jael Castro + - Ginger Tsueng + - "Mat\xFA\u0161 Kala\u0161" + - Magnus Palmblad + - Danielle Welter + - Soumyabrata Ghosh + - Venkata Satagopam + - Rahuman S. Malik Sheriff + publisher: Center for Open Science + date: '2023-07-22' + link: https://doi.org/g9whr4 + orcid: 0000-0001-9536-9115 + ginger-tsueng-list: true + plugin: orcid.py + file: orcid.yaml - id: doi:10.1186/s12859-023-05258-4 title: 'Schema Playground: a tool for authoring, extending, and using metadata schemas to improve FAIRness of biomedical data' @@ -887,6 +951,21 @@ buttons: - type: pdf link: pdf/Tsueng_2019c.pdf +- id: doi:10.15346/hc.v6i1.105 + title: 'Aligning Needs: Integrating Citizen Science Efforts into Schools Through + Service Requirements.' + authors: + - Ginger Tsueng + - Arun Kumar + - Steven Max Nanis + - Andrew I Su + publisher: Human Computation + date: '2019-06-02' + link: https://doi.org/gtrg2m + orcid: 0000-0001-9536-9115 + ginger-tsueng-list: true + plugin: orcid.py + file: orcid.yaml - id: doi:10.1186/s12859-018-2041-5 title: Cross-linking BioThings APIs through JSON-LD to facilitate knowledge exploration authors: @@ -1935,11 +2014,26 @@ buttons: - type: pdf link: pdf/Gopal_2017.pdf +- id: doi:10.1101/2025.08.01.668022 + title: Federated Knowledge Retrieval Elevates Large Language Model Performance on + Biomedical Benchmarks + authors: + - Janet Joy + - Andrew I. Su + publisher: Cold Spring Harbor Laboratory + pmid: '40766637' + pmcid: PMC12324469 + date: '2025-08-02' + link: https://doi.org/g9v236 + orcid: 0000-0002-9859-4104 + andrew-su-list: true + plugin: orcid.py + file: orcid.yaml - id: doi:10.1101/2025.04.28.651120 title: A Case-Based Explainable Graph Neural Network Framework for Mechanistic Drug Repositioning authors: - - Adriana Carolina Gonzalez Cavazos + - Adriana Carolina Gonzalez-Cavazos - Roger Tu - Meghamala Sinha - Andrew I Su diff --git a/_members/kai-yu-chen.md b/_members/kai-yu-chen.md index a6085ba0..8db4a815 100644 --- a/_members/kai-yu-chen.md +++ b/_members/kai-yu-chen.md @@ -1,7 +1,7 @@ --- name: Kai-yu Chen image: images/KaiyuChen_cropped.jpg -role: phd +role: alum group: active aliases: links: @@ -16,4 +16,4 @@ links: --- -Kai-yu is a graduate student in the lab who successfully defended her thesis in January 2025. Her thesis research focused on developing and applying computational methods for the analysis of low-coverage whole-genome sequencing data. \ No newline at end of file +Kai-Yu is currently working as a Data Scientist at BMS in the Immuno-Oncology group. Prior to joining BMS, she was a graduate student in the lab and successfully defended her thesis in January 2025. Her research focused on developing and applying statistical methods for analyzing low-coverage whole-genome sequencing data and its applications in human genetics.