From 3109b82baddf4cfa19b88197f8a416039f29a25d Mon Sep 17 00:00:00 2001 From: Kaushik Ram Ganapathy <38145810+Krganapa@users.noreply.github.com> Date: Wed, 12 Mar 2025 09:27:22 -0700 Subject: [PATCH 1/2] Kaushik's Bio Update --- _members/kaushik-ganapathy.md | 26 ++++++++++++++++---------- 1 file changed, 16 insertions(+), 10 deletions(-) diff --git a/_members/kaushik-ganapathy.md b/_members/kaushik-ganapathy.md index b46c3cad..83aa119c 100644 --- a/_members/kaushik-ganapathy.md +++ b/_members/kaushik-ganapathy.md @@ -3,17 +3,23 @@ name: Kaushik Ganapathy image: images/kaushik.jfif role: phd group: cwu-lab -aliases: links: linkedin: kaushik-ram-ganapathy - github: - orcid: - google-scholar: - twitter: - facebook: - instagram: - youtube: - + github: Krganapa + orcid: 0000-0002-2439-9373 + google-scholar: Tji0LIwAAAAJ + twitter: krganapa --- +Hi, I’m Kaushik, a 4th-year Ph.D. student in Bioinformatics co-advised by Profs. Chunlei Wu and Ali Torkamani. My thesis project focuses on developing data-driven statistical approaches to +unravel population-wide gene expression patterns, with a particular emphasis on allele-specific expression (ASE). By studying how ASE impacts health and disease, I aim to create tools with clinical diagnostic applications. + +Before grad school, I earned my bachelor’s degree from UC San Diego, where I contributed to several research projects. I helped develop machine learning systems for QM/MM simulations in molecular modeling with Prof. Francesco Paesani. I also worked with Dr. Peter Rose to build knowledge graphs for COVID-19, supporting data integration efforts. For my bachelor thesis, I was supervised by Prof. Ilya Zaslavsky and co-created GeoACT, a spatial agent-based COVID-19 transmission model that eventually received the HPCwire Readers’ Choice Award for its impact in helping schools reopen amid the pandemic. + +Apart from my research, I am deeply passionate about music and reading. I am also a largely self-taught pianist having qasi-perfect pitch. + + {% include section.html %} +### Education +B.S. - Data Science, Halicioglu Data Science Institute, UC San Diego -Kaushik is a graduate student in the Wu Lab. His research focuses on developing statistical models to help advance allele-specific expression analysis. \ No newline at end of file +{% include section.html %} +{% include list.html data="citations" component="citation" filters="kaushik-ganapathy-list: true" %} From 08b066dfb28aae36953bf906f679874dae622f46 Mon Sep 17 00:00:00 2001 From: Kaushik Ram Ganapathy <38145810+Krganapa@users.noreply.github.com> Date: Wed, 12 Mar 2025 09:30:48 -0700 Subject: [PATCH 2/2] Kaushik's Bio Update Fix Spaces --- _members/kaushik-ganapathy.md | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/_members/kaushik-ganapathy.md b/_members/kaushik-ganapathy.md index 83aa119c..1e9d2b0b 100644 --- a/_members/kaushik-ganapathy.md +++ b/_members/kaushik-ganapathy.md @@ -10,12 +10,11 @@ links: google-scholar: Tji0LIwAAAAJ twitter: krganapa --- -Hi, I’m Kaushik, a 4th-year Ph.D. student in Bioinformatics co-advised by Profs. Chunlei Wu and Ali Torkamani. My thesis project focuses on developing data-driven statistical approaches to -unravel population-wide gene expression patterns, with a particular emphasis on allele-specific expression (ASE). By studying how ASE impacts health and disease, I aim to create tools with clinical diagnostic applications. +Hi, I’m Kaushik, a 4th-year Ph.D. student in Bioinformatics co-advised by Profs. Chunlei Wu and Ali Torkamani. My thesis project focuses on developing data-driven statistical approaches to unravel population-wide gene expression patterns, with a particular emphasis on allele-specific expression (ASE). By studying how ASE impacts health and disease, I aim to create tools with clinical diagnostic applications to especially rare disease cases. Before grad school, I earned my bachelor’s degree from UC San Diego, where I contributed to several research projects. I helped develop machine learning systems for QM/MM simulations in molecular modeling with Prof. Francesco Paesani. I also worked with Dr. Peter Rose to build knowledge graphs for COVID-19, supporting data integration efforts. For my bachelor thesis, I was supervised by Prof. Ilya Zaslavsky and co-created GeoACT, a spatial agent-based COVID-19 transmission model that eventually received the HPCwire Readers’ Choice Award for its impact in helping schools reopen amid the pandemic. -Apart from my research, I am deeply passionate about music and reading. I am also a largely self-taught pianist having qasi-perfect pitch. +Apart from research, I am deeply passionate about music, reading, and watching old (1930s-1960s) movies. I am also a largely self-taught pianist having qasi-perfect pitch. {% include section.html %} ### Education