If taxid in list not present, kraktor crashes without any output

[JessF298]

If any taxid in a provided taxon id list is not present in the report, kraktor crashes and doesn't output anything even if some assignments for other taxa are present.

[10:01:42] [INFO] - Starting kractor at 10:01:42
Error:
0: Failed to build tree from Kraken report
1: Failed to find taxon IDs in kraken report: [0, 517]

(517 or children are not present in the kraken reports)

command:
kractor -i in.fastq.gz -o extracted.fastq -k in.kraken_assignments.tsv -r in.kraken_report.txt -t 10239 0 517 --children

[Sam-Sims]

Thanks for raising Jess!

I have addressed this in #32 and will push a new release shortly.

Default behavior is to now warn the user if a taxid doesnt exist in a report.

Any missing taxids are now included in the summary report with a new field missing_taxon_ids