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luciansmithluciansmith
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Update to l1v5.
There seem to be a lot of duplicate files; not sure if they're still necessary?
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‎documents/sed-ml-L1V5.pdf‎

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‎index.html‎

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@@ -141,15 +141,14 @@ <h1 class="page-header"><i class="fa fa-fw fa-home"></i> What is SED-ML?</h1>
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reproducibility of simulation experiments.
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</p>
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<p>
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The current version is <a href="documents/sed-ml-L1V4.pdf" target="_blank"><b>SED-ML Level 1 Version
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4</b></a>.
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The current version is <a href="documents/sed-ml-L1V5.pdf" target="_blank"><b>SED-ML Level 1 Version 5</b></a>.
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For additional specification documents and proposals see the <a href="specifications.html" title="Specifications">Specifications</a>
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page.
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</p>
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<a href="documents/sed-ml-L1V4.pdf" target="_blank">
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<a href="documents/sed-ml-L1V5.pdf" target="_blank">
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<span class="btn btn-default" style="font-weight: bold;">
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<img alt="logo" src="images/logoSEDML_w90_t.png"/>
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L1V4 (official specification document)
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L1V5 (official specification document)
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<img alt="pdf" src="images/pdf.png"/>
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</span>
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</a>

‎showcase.html‎

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@@ -373,6 +373,7 @@ <h2>SED-ML libraries</h2>
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<li>L1V2</li>
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<li>L1V3</li>
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<li>L1V4</li>
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<li>L1V5</li>
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</ul>
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</td>
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<td>C++ library for reading and writing SED-ML. Swig languange bindings for C#, Java, Python, R and Ruby.</td>
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<li>L1V2</li>
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<li>L1V3</li>
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<li>L1V4</li>
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<li>L1V5</li>
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</ul>
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</td>
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<td>Software application for simulation and analysis of biochemical networks and their dynamics. COPASI is a stand-alone program that supports models in the SBML standard and can simulate their behavior using ODEs or Gillespie`s stochastic simulation algorithm; arbitrary discrete events can be included in such simulations. COPASI supports impor and export of SED-ML files.</td>
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<li>L1V2</li>
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<li>L1V3</li>
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<li>L1V4</li>
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<li>L1V5</li>
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</ul>
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<td>Python environment based on spyder2 IDE. It combines a number of existing libraries, including libSBML, libRoadRunner (including libStruct), libAntimony, and is extensible via telPlugins.</td>

‎site_creator/templates/db/libraries.yaml‎

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- L1V2
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- L1V3
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- L1V4
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- L1V5
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- name: 'libSedML (old version)'
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link: 'http://libsedml.sf.net'

‎site_creator/templates/db/tools.yaml‎

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- L1V2
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- L1V3
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- L1V4
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- L1V5
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modelLanguages:
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- SBML
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‎site_creator/templates/index.html‎

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reproducibility of simulation experiments.
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</p>
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<p>
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The current version is <a href="documents/sed-ml-L1V4.pdf" target="_blank"><b>SED-ML Level 1 Version
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4</b></a>.
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For additional specification documents and proposals see the <a href="specifications.html" title="Specifications">Specifications</a>
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page.
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The current version is <a href="documents/sed-ml-L1V5.pdf" target="_blank"><b>SED-ML Level 1 Version 5</b></a>.
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For additional specification documents and proposals see the <a href="specifications.html" title="Specifications">Specifications</a> page.
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</p>
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<a href="documents/sed-ml-L1V4.pdf" target="_blank">
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<a href="documents/sed-ml-L1V5.pdf" target="_blank">
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<span class="btn btn-default" style="font-weight: bold;">
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<img alt="logo" src="images/logoSEDML_w90_t.png"/>
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L1V4 (official specification document)
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L1V5 (official specification document)
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<img alt="pdf" src="images/pdf.png"/>
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‎site_creator/templates/specifications.html‎

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<tr>
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<td><b>Latest release:</b></td>
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<a href="documents/sed-ml-L1V4.pdf" target="_blank">
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<a href="documents/sed-ml-L1V5.pdf" target="_blank">
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<img alt="logo" src="images/logoSEDML_w90_t.png" height="25"/>
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L1V4
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L1V5
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<img alt="pdf" src="images/pdf.png" height="35"/>
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</span>
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</a>
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</td>
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<!--
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<td>
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<a href="https://github.com/SED-ML/sed-ml/raw/master/specification/level-1-version-4/sed-ml-L1V4.pdf" target="_blank">
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<a href="https://github.com/SED-ML/sed-ml/raw/master/specification/level-1-version-4/sed-ml-L1V5.pdf" target="_blank">
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<img alt="logo" src="images/logoSEDML_w90_t.png" height="25"/>
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L1V4 draft
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L1V5 draft
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<h2>All specifications</h2>
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<a href="documents/sed-ml-L1V4.pdf" target="_blank">
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<a href="documents/sed-ml-L1V5.pdf" target="_blank">
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<span class="btn btn-default" style="font-weight: bold;">
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L1V4 (official specification document)
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L1V5 (official specification document)
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<img alt="pdf" src="images/pdf.png" height="35"/>
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<a href="documents/sed-ml-L1V4.pdf" target="_blank">
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L1V4 (official specification document)
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<img alt="pdf" src="images/pdf.png" height="35"/>
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</span>
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</a>
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</p>
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<p>
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<a href="documents/sed-ml-L1V3.pdf" target="_blank">
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<span class="btn btn-default" style="font-weight: bold;">
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L1V3 (official specification document)

‎specifications.html‎

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<td><b>Latest release:</b></td>
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<td>
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<a href="documents/sed-ml-L1V4.pdf" target="_blank">
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<a href="documents/sed-ml-L1V5.pdf" target="_blank">
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<span class="btn btn-success" style="font-weight: bold;">
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<img alt="logo" src="images/logoSEDML_w90_t.png" height="25"/>
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L1V4
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L1V5
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<!--
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<td>
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<a href="https://github.com/SED-ML/sed-ml/raw/master/specification/level-1-version-4/sed-ml-L1V4.pdf" target="_blank">
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<a href="https://github.com/SED-ML/sed-ml/raw/master/specification/level-1-version-5/sed-ml-L1V5.pdf" target="_blank">
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<span class="btn btn-warning" style="font-weight: bold;">
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<img alt="logo" src="images/logoSEDML_w90_t.png" height="25"/>
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L1V4 draft
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L15 draft
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<td>The source is available from <a href="https://github.com/SED-ML/sed-ml/tree/master/specification/level-1-version-4">https://github.com/SED-ML/sed-ml/tree/master/specification/level-1-version-4</a>.<br />
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<td>The source is available from <a href="https://github.com/SED-ML/sed-ml/tree/master/specification/level-1-version-5">https://github.com/SED-ML/sed-ml/tree/master/specification/level-1-version-5</a>.<br />
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Please submit changes via pull requests against the repository.<br />
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If you find issues with the specification please report them at <a href="https://github.com/SED-ML/sed-ml/issues">https://github.com/SED-ML/sed-ml/issues</a>.
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<a href="documents/sed-ml-L1V4.pdf" target="_blank">
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<a href="documents/sed-ml-L1V5.pdf" target="_blank">
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L1V4 (official specification document)
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L1V5 (official specification document)
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<img alt="pdf" src="images/pdf.png" height="35"/>
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<a href="documents/sed-ml-L1V4.pdf" target="_blank">
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L1V4 (official specification document)
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<img alt="pdf" src="images/pdf.png" height="35"/>
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<a href="documents/sed-ml-L1V3.pdf" target="_blank">
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L1V3 (official specification document)

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