PyAutoLabs
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@@ -183,3 +183,15 @@
     report step so a failed run comments on its issue instead of silence.
     Close-out post-merge (human): re-apply labels on #69/#71/#72; Witness =
     green queue_filing.yml run on #71 that opens a filing PR.
+
+## cortex-schema-skeleton
+- issue: https://github.com/PyAutoLabs/PyAutoMind/issues/379
+- prompt: active/cortex_schema_and_skeleton.md
+- issued: 2026-09-01
+- epic: cortex-birth (phase 1 of 7; ledger draft/feature/pyautocortex/cortex_birth_epic.md; gate phase 0 SHIPPED #377)
+- session: claude-code-cli (Fable architect; two delegated Fable slices — A schemas/docs/fixtures, B cortex.py/ledger_merge/tests)
+- status: library-dev
+- worktree: ~/Code/PyAutoLabs-wt/cortex-schema-skeleton
+- parallel-claim: worktree_check_conflict fired for PyAutoBrain (organ-board-github-link) — PR #326 MERGED 2026-09-01T19:35Z, no worktree, entry awaiting its own /prm; stale claim, own worktree taken.
+- bootstrap: PyAutoCortex is EMPTY on GitHub (no branches) — slice A clones it to the canonical root and makes the birth commit on main before branching.
+- repos:
@@ -20,6 +20,7 @@ Epic: cortex-birth
 Phase: 1
 Parent: draft/feature/pyautocortex/cortex_birth_epic.md
 Filed: 2026-09-01
+Issued: 2026-09-01
 
 Phase 1 of 7 in the PyAutoCortex birth epic. **Gate: phase 0** (the repo must
 exist). Gates phases 2 and 3.
 
@@ -222,7 +222,7 @@
 </head>
 <body>
 <header class="hero"><span class="orb"><svg class="mark" viewBox="0 0 48 48" fill="none" stroke="currentColor" stroke-width="1.3" stroke-linecap="round" stroke-linejoin="round" aria-hidden="true"><circle cx="24" cy="24" r="20.4"/><path d="M20.2,37.6 L20.2,33.6 C20.2,32.4 19.4,31.6 18.4,30.8 C16.8,29.6 15.8,28.2 15.6,26.6 C15.5,25.6 14.9,25.2 13.9,24.9 C12.6,24.5 12.3,23.7 13.0,22.7 C13.8,21.6 14.5,20.6 14.6,19.4 C15.0,15.4 18.2,12.2 22.4,11.8 C27.2,11.3 31.6,14.6 32.3,19.2 C32.8,22.4 31.6,25.0 30.6,27.0 C29.9,28.4 29.6,29.6 29.6,31.2 L29.6,37.6"/><circle cx="24.6" cy="19.6" r="4.4"/><path d="M22.5,19.7 L24.0,21.3 L26.8,18.1"/><path d="M34.2,16.5 L38.8,16.5 M35.2,21.0 L39.4,21.0 M33.6,25.5 L37.2,25.5"/><g fill="currentColor" stroke="none"><circle cx="40.1" cy="16.5" r="1.4"/><circle cx="40.7" cy="21.0" r="1.4"/><circle cx="38.5" cy="25.5" r="1.4"/></g></svg></span><h1>PyAuto<b>Mind</b><span class="kind">Dashboard</span></h1><div class="rule"></div><p class="tag">Intent. Priority. Flow.</p></header><p class="lede">Every task the Mind is holding. Tap a task's 📋 and its <code>/start_dev</code> command is on your clipboard — paste it into a Claude Code chat to route Claude straight to that task. <a href="#recent">Recent</a> is the same work by date — what has been happening rather than what to do next.</p>
-<ul class="stats"><li><b>7</b><span>In flight</span></li><li><b>2</b><span>Human review</span></li><li><b>3</b><span>Parked</span></li><li><b>5</b><span>Planned</span></li><li><b>169</b><span>Backlog</span></li></ul>
+<ul class="stats"><li><b>8</b><span>In flight</span></li><li><b>2</b><span>Human review</span></li><li><b>3</b><span>Parked</span></li><li><b>5</b><span>Planned</span></li><li><b>168</b><span>Backlog</span></li></ul>
 <div class="fresh"><p><b>Last updated 2026-09-01.</b> This page is generated from <code>active/</code>, <code>draft/</code> and the registry files, so it is only as current as they are. <code>dashboard_refresh.yml</code> re-renders it on every push to <code>main</code> — that heals a stale page, but not a stale prompt: a task that shipped without its prompt advancing to <code>complete/</code> keeps rendering here as pickable backlog. Reconciling those is the refresh below.</p>
 <div class="task"><button class="copy" data-cmd="Bring the PyAutoMind dashboard up to date. Work in the PyAutoMind checkout:
 
@@ -281,6 +281,7 @@ <h3>Fits a slot <span class="facets">(ready to run unattended, cheapest to revie
 <h2>In flight <a class="mdsrc" href="https://github.com/PyAutoLabs/PyAutoMind/blob/main/active.md">markdown version</a></h2>
 <p class="muted">Issued — each has an open GitHub issue and usually a branch.</p>
 <div class="task"><button class="copy" data-cmd="/start_dev active/add_resampling_info_section_to_the_bottom.md" aria-label="Copy the Claude command">📋</button><p><a href="https://github.com/PyAutoLabs/PyAutoMind/blob/main/active/add_resampling_info_section_to_the_bottom.md">Add Resampling Info section to the bottom of search.summary</a> — <a href="https://github.com/PyAutoLabs/PyAutoFit/issues/1551">issue #1551</a><span class="facets"> — issued 2026-08-31</span> — <span class="facets">library-shipped, awaiting-merge</span></p></div>
+<div class="task"><button class="copy" data-cmd="/start_dev active/cortex_schema_and_skeleton.md" aria-label="Copy the Claude command">📋</button><p><a href="https://github.com/PyAutoLabs/PyAutoMind/blob/main/active/cortex_schema_and_skeleton.md">Cortex phase 1 — the schema and the repo skeleton</a> — <a href="https://github.com/PyAutoLabs/PyAutoMind/issues/379">issue #379</a><span class="facets"> — issued 2026-09-01</span> — <span class="facets">library-dev</span></p></div>
 <div class="task"><button class="copy" data-cmd="/start_dev active/follow_up_wave_adapt_split_and_rectangular.md" aria-label="Copy the Claude command">📋</button><p><a href="https://github.com/PyAutoLabs/PyAutoMind/blob/main/active/follow_up_wave_adapt_split_and_rectangular.md">Subhalo validation follow-up wave: AdaptSplit fix, no subhalo[2], RectangularBilinear runs</a><span class="facets"> — issued 2026-08-31</span> — <span class="facets">runs-in-flight (supervised --auto; human-dispatched from the 2026-08-31-am</span></p></div>
 <div class="task"><button class="copy" data-cmd="/start_dev active/github_page_link_in_every_organ_board.md" aria-label="Copy the Claude command">📋</button><p><a href="https://github.com/PyAutoLabs/PyAutoMind/blob/main/active/github_page_link_in_every_organ_board.md">GitHub Page link in every organ board header</a> — <a href="https://github.com/PyAutoLabs/PyAutoBrain/issues/325">issue #325</a><span class="facets"> — issued 2026-08-31</span> — <span class="facets">pr-open (all five legs of the autonomous-ship gate passed 2026-08-31; merge is the human's)</span></p></div>
 <div class="task"><button class="copy" data-cmd="/start_dev active/multistartprodigy_stops_at_49_steps_when_iterati.md" aria-label="Copy the Claude command">📋</button><p><a href="https://github.com/PyAutoLabs/PyAutoMind/blob/main/active/multistartprodigy_stops_at_49_steps_when_iterati.md">MultiStartProdigy stops at 49 steps when iterations_per_quick_update=50 in @PyAutoFit</a> — <a href="https://github.com/PyAutoLabs/PyAutoFit/issues/1553">issue #1553</a><span class="facets"> — issued 2026-08-31</span> — <span class="facets">library-shipped, awaiting-merge (--auto safe; batch 2026-08-31-pm member autofit-prodigy-49)</span></p></div>
@@ -334,7 +335,7 @@ <h2>Planned <a class="mdsrc" href="https://github.com/PyAutoLabs/PyAutoMind/blob
 <div class="task"><button class="copy" data-cmd="/route start the planned PyAutoMind task latent-nan-guard-honest-run — its record is in planned.md" aria-label="Copy the Claude command">📋</button><p><b>latent-nan-guard-honest-run</b><span class="facets"> — planned 2026-07-22</span></p></div>
 </details>
 <h2>Backlog <a class="mdsrc" href="https://github.com/PyAutoLabs/PyAutoMind/tree/main/draft">markdown version</a></h2>
-<p class="muted">169 filed prompts, not started — sorted most-pickable first (priority, then size). 62 of them belong to an epic and are listed only under Epics below.</p>
+<p class="muted">168 filed prompts, not started — sorted most-pickable first (priority, then size). 61 of them belong to an epic and are listed only under Epics below.</p>
 <details>
 <summary>feature — 26</summary>
 <div class="task"><button class="copy" data-cmd="/start_dev draft/feature/autofit/prior_exit_sampler_coverage.md" aria-label="Copy the Claude command">📋</button><p><a href="https://github.com/PyAutoLabs/PyAutoMind/blob/main/draft/feature/autofit/prior_exit_sampler_coverage.md">Which other searches need prior-support handling — coverage audit after Prodigy</a><span class="tags"><span class="pill w">✨ feature</span><span class="pill">autofit</span><span class="pill n">medium</span><span class="pill g">safe</span><span class="pill n">medium</span></span></p></div>
@@ -819,6 +820,12 @@ <h2>Bundles <a class="mdsrc" href="https://github.com/PyAutoLabs/PyAutoMind/blob
 <p class="muted">The 50 newest things to happen to the work in hand, newest first — issued, parked, filed. Every other section on this page is laid out by state, which is exactly why none of them can answer “what has been happening?”. Shipped work is not here: it is read from <code>complete/index.md</code>, and a thousand records deep it would crowd out everything anyone can still act on. Showing the newest 10; … opens the next 10.</p>
 <table class="recent">
 <tr>
+<td class="when">2026-09-01</td>
+<td class="what">issued</td>
+<td><a href="https://github.com/PyAutoLabs/PyAutoMind/blob/main/active/cortex_schema_and_skeleton.md">Cortex phase 1 — the schema and the repo skeleton</a></td>
+<td class="pick"><button class="copy" data-cmd="/start_dev active/cortex_schema_and_skeleton.md" aria-label="Copy the Claude command">📋</button></td>
+</tr>
+<tr>
 <td class="when">2026-08-31</td>
 <td class="what">issued</td>
 <td><a href="https://github.com/PyAutoLabs/PyAutoMind/blob/main/active/follow_up_wave_adapt_split_and_rectangular.md">Subhalo validation follow-up wave: AdaptSplit fix, no subhalo[2]…</a></td>
@@ -872,7 +879,7 @@ <h2>Bundles <a class="mdsrc" href="https://github.com/PyAutoLabs/PyAutoMind/blob
 <td><a href="https://github.com/PyAutoLabs/PyAutoMind/blob/main/draft/docs/autolens_workspace/multi_plane_guide_richardson_warning_update.md">Update the multi_plane guide's Richardson-step warning once the…</a></td>
 <td class="pick"><button class="copy" data-cmd="/start_dev draft/docs/autolens_workspace/multi_plane_guide_richardson_warning_update.md" aria-label="Copy the Claude command">📋</button></td>
 </tr>
-<tr>
+<tr hidden>
 <td class="when">2026-08-29</td>
 <td class="what">filed</td>
 <td><a href="https://github.com/PyAutoLabs/PyAutoMind/blob/main/draft/bug/autoarray/adapt_scatter_factor_two.md">NOTE: legacy <code>Adapt</code> scatters every edge twice — it is 2× <code>Constant</code>…</a></td>
@@ -1138,12 +1145,6 @@ <h2>Bundles <a class="mdsrc" href="https://github.com/PyAutoLabs/PyAutoMind/blob
 <td><a href="https://github.com/PyAutoLabs/PyAutoMind/blob/main/draft/docs/autocti/api_rst_rewrite.md">Rewrite PyAutoCTI docs/api — 55 of 89 autosummary entries are dead</a></td>
 <td class="pick"><button class="copy" data-cmd="/start_dev draft/docs/autocti/api_rst_rewrite.md" aria-label="Copy the Claude command">📋</button></td>
 </tr>
-<tr hidden>
-<td class="when">2026-08-06</td>
-<td class="what">filed</td>
-<td><a href="https://github.com/PyAutoLabs/PyAutoMind/blob/main/draft/maintenance/libraries/dep_cap_refresh_2026_08.md">Dependency-cap refresh 2026-08: safe bumps, astropy 8 decision, two…</a></td>
-<td class="pick"><button class="copy" data-cmd="/start_dev draft/maintenance/libraries/dep_cap_refresh_2026_08.md" aria-label="Copy the Claude command">📋</button></td>
-</tr>
 </table>
 <button class="more" data-page="10">… 10 more (40 left)</button>
 <h2>Epics <a class="mdsrc" href="https://github.com/PyAutoLabs/PyAutoMind/blob/main/epics.md">markdown version</a></h2>
@@ -1233,9 +1234,8 @@ <h2>Epics <a class="mdsrc" href="https://github.com/PyAutoLabs/PyAutoMind/blob/m
 <div class="task"><button class="copy" data-cmd="/start_dev draft/feature/pyautoheart/ci_timing_fast_tests_epic.md" aria-label="Copy the Claude command">📋</button><p><a href="https://github.com/PyAutoLabs/PyAutoMind/blob/main/draft/feature/pyautoheart/ci_timing_fast_tests_epic.md">CI timing &amp; fast tests — epic</a><span class="tags"><span class="pill w">✨ feature</span><span class="pill">pyautoheart</span><span class="pill r">too-large</span><span class="pill n">supervised</span><span class="pill r">high</span></span></p></div>
 </details>
 <details>
-<summary>PyAutoCortex — the science organ: split science runs out of the Mind — 7 queued prompt(s), in order</summary>
+<summary>PyAutoCortex — the science organ: split science runs out of the Mind — 6 queued prompt(s), in order</summary>
 <div class="task"><button class="copy" data-cmd="Continue the 'PyAutoCortex — the science organ: split science runs out of the Mind' epic. Its canonical state lives in draft/feature/pyautocortex/cortex_birth_epic.md — read that ledger (and any DECISIONS/RESULTS files beside it) first. Cross-check this epic's entry in PyAutoMind/epics.md, any related rows in PyAutoMind/active.md, and the referenced repos' open issues and PRs, to work out the last completed phase and what is currently in flight. Then pick the next logical step and continue it through the normal workflow (/start_dev — filing the phase's prompt first if none exists), updating the ledger as the work advances. Note: 7 phased prompts (0-6) under draft/feature/pyautocortex/ — issue ONE at a" aria-label="Copy the Claude command">📋</button><p><b>PyAutoCortex — the science organ: split science runs out of the Mind</b> — <span class="facets">ledger: <code>draft/feature/pyautocortex/cortex_birth_epic.md</code></span> — <span class="facets">phase 0 SHIPPED 2026-09-01 (PyAutoMind#377; record complete/2026/09/cortex-birth-organ-row.md); next: phase 1…</span></p></div>
-<div class="task"><button class="copy" data-cmd="/start_dev draft/feature/pyautocortex/cortex_schema_and_skeleton.md" aria-label="Copy the Claude command">📋</button><p><a href="https://github.com/PyAutoLabs/PyAutoMind/blob/main/draft/feature/pyautocortex/cortex_schema_and_skeleton.md">Cortex phase 1 — the schema and the repo skeleton</a><span class="tags"><span class="pill w">✨ feature</span><span class="pill">pyautocortex</span><span class="pill y">large</span><span class="pill n">supervised</span><span class="pill r">high</span></span></p></div>
 <div class="task"><button class="copy" data-cmd="/start_dev draft/feature/pyautocortex/cortex_conductor_and_dashboard.md" aria-label="Copy the Claude command">📋</button><p><a href="https://github.com/PyAutoLabs/PyAutoMind/blob/main/draft/feature/pyautocortex/cortex_conductor_and_dashboard.md">Cortex phase 2 — the Brain conductor, the dashboard, gate grading…</a><span class="tags"><span class="pill w">✨ feature</span><span class="pill">pyautocortex</span><span class="pill y">large</span><span class="pill n">supervised</span><span class="pill r">high</span></span></p></div>
 <div class="task"><button class="copy" data-cmd="/start_dev draft/feature/pyautocortex/cortex_project_remotes_and_registration.md" aria-label="Copy the Claude command">📋</button><p><a href="https://github.com/PyAutoLabs/PyAutoMind/blob/main/draft/feature/pyautocortex/cortex_project_remotes_and_registration.md">Cortex phase 3 — private remotes for the Science-folder projects…</a><span class="tags"><span class="pill w">✨ feature</span><span class="pill">pyautocortex</span><span class="pill n">medium</span><span class="pill n">supervised</span><span class="pill r">high</span></span></p></div>
 <div class="task"><button class="copy" data-cmd="/start_dev draft/feature/pyautocortex/cortex_migration_split_epics.md" aria-label="Copy the Claude command">📋</button><p><a href="https://github.com/PyAutoLabs/PyAutoMind/blob/main/draft/feature/pyautocortex/cortex_migration_split_epics.md">Cortex phase 4 — migration: split the epics, backfill the rulings, move…</a><span class="tags"><span class="pill w">✨ feature</span><span class="pill">pyautocortex</span><span class="pill y">large</span><span class="pill n">supervised</span><span class="pill r">high</span></span></p></div>