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Merge pull request #49 from PyAutoLabs/feature/queue-intake-claude
feat: claude-action filing of queue-intake/cite issues
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‎.github/workflows/queue_filing.yml‎

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name: Queue filing
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# The dashboard's 📥 `queue-intake` / 📑 `queue-cite` buttons open prefilled
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# issues; this workflow has Claude file the named paper — bibliography entry,
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# wiki sources section (minimal for cite, full stub for intake, the human's
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# notes folded in), DONE-mark on the queue line — and opens a reviewable PR
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# that closes the issue. Merge stays human.
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#
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# Trigger is `labeled` only: GitHub fires it both for labels applied at
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# creation (the dashboard path) and for labels added later, and using it alone
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# avoids the double-run an `opened`+`labeled` pair would cause. Only
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# owner/member/collaborator-authored issues act (public repo — same gate as
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# queue_actions.yml), and only triage+ users can apply labels at all.
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#
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# The PR is created with the runner's GITHUB_TOKEN, so `pull_request`
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# workflows (validate.yml) do NOT run on it — `make validate` + pytest run
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# here as the gate instead, before anything is pushed.
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#
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# Claude runs with tools scoped to workspace edits plus arXiv lookups; the
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# deterministic steps below stage explicit paths only — never `git add -A`.
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on:
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issues:
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types: [labeled]
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# contents: write → push the filing branch; pull-requests/issues: write → the
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# PR + failure comment; id-token: write → claude-code-action's OIDC startup
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# (same requirement as PyAutoMind's arxiv_papers.yml).
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permissions:
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contents: write
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pull-requests: write
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issues: write
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id-token: write
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concurrency:
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group: queue-filing-${{ github.event.issue.number }}
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cancel-in-progress: false
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jobs:
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file-paper:
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if: >-
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contains(fromJSON('["queue-intake", "queue-cite"]'),
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github.event.label.name) &&
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contains(fromJSON('["OWNER", "MEMBER", "COLLABORATOR"]'),
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github.event.issue.author_association)
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runs-on: ubuntu-latest
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env:
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GH_TOKEN: ${{ github.token }}
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# gh needs explicit repo context in the pre-checkout secret-guard step.
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GH_REPO: ${{ github.repository }}
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ISSUE: ${{ github.event.issue.number }}
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steps:
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- name: Require the Claude OAuth token
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env:
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TOKEN: ${{ secrets.CLAUDE_CODE_OAUTH_TOKEN }}
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run: |
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if [ -z "$TOKEN" ]; then
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echo "::error::CLAUDE_CODE_OAUTH_TOKEN is not set on this repo — add it under Settings → Secrets and variables → Actions to enable queue filing."
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gh issue comment "$ISSUE" --body \
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"Queue filing is not enabled yet: the CLAUDE_CODE_OAUTH_TOKEN secret is missing on this repo (Settings → Secrets and variables → Actions). File this paper from a Claude Code session instead, or add the secret and re-apply the label."
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exit 1
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fi
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- uses: actions/checkout@v4
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- name: Stash the request for Claude
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env:
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# env, never inline interpolation — issue text is untrusted input.
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ISSUE_BODY: ${{ github.event.issue.body }}
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LABEL: ${{ github.event.label.name }}
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run: |
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printf '%s' "$ISSUE_BODY" > /tmp/issue_body.txt
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printf '%s' "$LABEL" > /tmp/issue_label.txt
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- name: File the paper with Claude
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uses: anthropics/claude-code-action@v1
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with:
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# Claude subscription OAuth token — NOT an API key (the org pattern
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# from PyAutoMind arxiv_papers.yml / morning_status.yml).
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claude_code_oauth_token: ${{ secrets.CLAUDE_CODE_OAUTH_TOKEN }}
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# Default-hidden output masks real failures — surface everything.
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show_full_output: true
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# Workspace edits + the repo's own gates + arXiv metadata lookups.
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# No git/gh: the deterministic steps below own branch/commit/PR.
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claude_args: '--allowedTools "Read,Glob,Grep,Edit,Write,Bash(make:*),Bash(python:*),Bash(python3:*),WebFetch(domain:arxiv.org),WebFetch(domain:export.arxiv.org)"'
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prompt: |
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You are filing one paper into this PyAutoMemory checkout.
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Read /tmp/issue_body.txt (a dashboard queue request). Extract:
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- `section:` — the reading-queue section header,
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- `line:` — the exact reading-queue.md line (title, possibly
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with a trailing ` — <arXiv id or URL>` ref),
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- `notes:` — the human's free-text notes; treat as absent if it
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still holds the "(optional — replace this…)" placeholder.
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Read /tmp/issue_label.txt: `queue-intake` (full filing) or
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`queue-cite` (minimal, citeable-only).
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Follow this repo's documented workflow — bibliography/README.md
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"Adding a paper" and wiki/CLAUDE.md's schema:
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1. Identify the paper. Use the arXiv ref if the line has one;
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otherwise search arXiv by title (WebFetch against arxiv.org /
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export.arxiv.org only). Get authoritative metadata: authors,
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year, arXiv id, journal if published.
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2. Add the canonical BibTeX entry to the bibliography (the single
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canonical .bib file per bibliography/README.md). Follow the
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README's key convention exactly.
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3. Wiki sources page: pick the sub-wiki whose domain matches the
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section (e.g. "Strong Lensing" → wiki/lensing/); check the
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sub-wiki index if unsure. In the matching sources/*.md page:
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- queue-cite → add a MINIMAL section: heading, the
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`**Canonical BibTeX key:**` marker with the new key, and the
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human's notes (lightly cleaned up) — nothing deeper.
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- queue-intake → add a full stub section per wiki/CLAUDE.md,
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folding the notes into the summary.
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4. reading-queue.md: prefix the exact `line:` inside its
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`## section` with `DONE <today's date> — ` (never delete it).
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5. Run `make validate` and `python -m pytest tests/ -q`; fix your
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own filing mistakes until both are green.
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Touch ONLY bibliography/, wiki/, and reading-queue.md. Do not
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commit — the workflow handles git. If the paper cannot be
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identified confidently, write the reason to /tmp/filing_error.txt
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and stop without editing anything.
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- name: Abort cleanly if Claude could not identify the paper
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run: |
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if [ -f /tmp/filing_error.txt ]; then
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gh issue comment "$ISSUE" --body-file /tmp/filing_error.txt
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echo "::error::filing aborted — reason posted to the issue"
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exit 1
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fi
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- name: Gate the filing (validate + tests)
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run: |
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make validate
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python -m pytest tests/ -q
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- name: Branch, commit, push, open the PR (explicit paths only)
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run: |
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git config user.name "github-actions[bot]"
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git config user.email "github-actions[bot]@users.noreply.github.com"
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branch="queue-filing/issue-${ISSUE}"
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git checkout -b "$branch"
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git add bibliography/ wiki/ reading-queue.md
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if git diff --cached --quiet; then
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echo "::error::Claude produced no changes"; exit 1
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fi
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git commit -m "queue: file paper from #${ISSUE}"
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git push -u origin "$branch"
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{
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echo "Files the paper requested in #${ISSUE} (label: $(cat /tmp/issue_label.txt))."
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echo
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echo "Rendered by claude-code-action from the issue's section/line/notes;"
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echo "\`make validate\` + \`pytest tests/\` ran green in the filing workflow"
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echo "(GITHUB_TOKEN-created PRs do not trigger validate.yml)."
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echo
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echo "Closes #${ISSUE}."
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} > /tmp/pr_body.md
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gh pr create --base main --head "$branch" \
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--title "queue filing: paper from #${ISSUE}" \
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--body-file /tmp/pr_body.md
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gh issue comment "$ISSUE" --body \
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"Filing PR opened: $(gh pr view "$branch" --json url --jq .url). Review and merge to complete the intake."
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- name: Report failure on the issue
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if: failure()
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run: |
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gh issue comment "$ISSUE" --body \
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"Queue filing failed — see the workflow run: ${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }}. The issue stays open; file manually from a Claude Code session if needed." || true

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