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PyAutoMemory — top-level index

The PyAuto organism's long-term knowledge: a multi-domain knowledge base of accumulated scientific and project knowledge, organised as several Karpathy-style LLM wikis over a shared canonical bibliography. Each sub-wiki uses the schema in wiki/CLAUDE.md.

Sub-wikis

  • wiki/lensing/ — strong gravitational lensing. The primary sub-wiki. Lens equation, mass models, source reconstruction, degeneracies, time-delay cosmography, dark-matter substructure, surveys (SLACS, BELLS, H0liCOW, TDCOSMO, Euclid Q1, HFF), software (PyAutoLens, lenstronomy).
  • wiki/smbh/ — supermassive black holes. Binaries, recoil, scouring, mass functions, GW background (NANOGrav), seeds and growth.
  • wiki/cti/ — Charge Transfer Inefficiency. CCD trap physics, forward-model correction (arctic), trap pumping, Euclid VIS calibration, HST ACS, Gaia.
  • wiki/methods/ — statistical and computational methods. Bayesian inference, samplers, deep learning, probabilistic programming, NUFFT, simulations, scientific software.
  • wiki/galaxies/ — galaxy formation and evolution. Massive ellipticals (MASSIVE survey), bulge/disk decomposition, IFU spectroscopy, stellar halos, COSMOS, high-redshift, halo-galaxy connection, galaxy-scale DM geometry.

Reading queue

  • reading-queue.md — the paper queue AND the reading history: ## section headers group papers by domain, one title per line, and a read paper is never deleted — its line gains a DONE <date> — prefix. When a queued paper is read, add its canonical entry to bibliography/, stub it in the matching sub-wiki sources/*.md, mark the line DONE, and run make validate — the PDF itself stays off-repo, never committed. Per-section waiting/read counts live on the dashboard.

Schema

The schema is defined once in wiki/CLAUDE.md and inherited by all sub-wikis. Each sub-wiki has its own CLAUDE.md that diverges only on the ## Scope section. Per-page frontmatter, naming conventions, [[wiki-links]], status flags (stub | drafted | reviewed), and source-page layout are uniform across sub-wikis.

Citation metadata

The sub-wikis explain which claims papers support. Canonical BibTeX metadata, key aliases, downstream-project resolution rules, and validation live in bibliography/.

Provenance

The wikis were seeded in 2026-05 from a ~615-paper personal PDF library (the PDFs themselves were deleted from the repo the same day, backed up externally). Most legacy per-paper entries remain filename-inferred stubs: upgrade them to compact, claim-oriented drafted entries only after verifying the paper, and log the change in the relevant sub-wiki. The live counts — pages, maturity, unresolved citation keys, reading queue — are on the dashboard.