Adopt the health shell scripts; worktree_status becomes a /health leg (#35)

- scripts/{health,health_sync,health_release,health_audit}.sh move here from
  PyAutoMind/scripts — the Heart owns the health surface; a health dashboard
  living in the intent organ was a boundary leak. Mind keeps forwarding shims.
- skills/worktree_status/SKILL.md -> reference.md: retired as a standalone
  installed skill; it is now the procedure behind the new `/health worktrees`
  leg (same pattern as the pyauto-status legs).

Co-authored-by: Jammy2211 <JNightingale2211@gmail.com>
Co-authored-by: Claude Fable 5 <noreply@anthropic.com>

Author: 3 people

scripts/health.sh

@@ -0,0 +1,49 @@
+#!/usr/bin/env bash
+# health.sh — the `health` shell dispatcher.
+#
+# Front door for the local health/dev shell tools, mirroring the Claude `/health`
+# command door. Routes to the implementations defined in the sibling scripts
+# (source all four via ~/.bashrc). Lives in PyAutoHeart — the Heart owns the
+# health surface; PyAutoMind/scripts keeps forwarding shims for old sourcing
+# paths:
+#
+#   health              cross-repo git-sync dashboard   (health_sync.sh    -> _health_sync)
+#   health sync         explicit alias of the above
+#   health release      last release-prep run dashboard (health_release.sh -> _health_release)
+#   health audit        structural repo-health audit    (health_audit.sh   -> _health_audit)
+#   health help         this usage
+#
+# Distinct from the `pyauto-heart` binary (the Heart organ CLI) — this is the
+# local shell convenience layer. Any argument after the subcommand is passed
+# through (e.g. `health release <run-dir>`).
+
+health() {
+  local sub="${1:-sync}"
+  # Consume the subcommand token only if one was actually given, so bare
+  # `health` (defaults to sync) and `health <sub> <args…>` both pass the
+  # remaining "$@" straight through to the implementation.
+  [ "$#" -gt 0 ] && shift
+  case "$sub" in
+    sync)    _health_sync "$@" ;;
+    release) _health_release "$@" ;;
+    audit)   _health_audit "$@" ;;
+    -h|--help|help)
+      cat <<'EOF'
+health — local health/dev shell dispatcher (mirrors the Claude /health door).
+
+Usage: health [sync|release|audit]
+
+    health            cross-repo git-sync dashboard (branch, behind/ahead, dirty)
+    health sync       same as bare `health`
+    health release    last PyAutoBuild release-prep run dashboard
+    health audit      structural repo-health audit (non-repo dirs, stashes, dead branches)
+
+Release-run helpers: health-report / health-json / health-triage.
+EOF
+      ;;
+    *)
+      echo "health: unknown subcommand '$sub' (try: health help)" >&2
+      return 2
+      ;;
+  esac
+}

scripts/health_audit.sh

@@ -0,0 +1,113 @@
+#!/usr/bin/env bash
+# health_audit.sh — on-demand structural repo-health audit.
+#
+# Defines `_health_audit` (run via `health audit`) that scans ~/Code/PyAutoLabs/
+# for state the git-sync dashboard (`health` / `health sync`) doesn't surface:
+#
+#   1. Top-level directories with no .git (intentionally-not-a-repo or bug).
+#      Skip prefixes "." (hidden) and "z_" (user's personal/staging convention).
+#   2. Stashes older than $PYAUTO_AUDIT_STASH_DAYS (default 14) — drift-from-
+#      stash is a real failure mode.
+#   3. Local-only branches with no upstream and last commit older than
+#      $PYAUTO_AUDIT_BRANCH_DAYS (default 30) — likely abandoned work.
+#
+# Run on demand. Always exits 0 — informational, the user reads + decides.
+#
+# Usage (normally sourced via ~/.bashrc, run through the `health` dispatcher):
+#   source ~/Code/PyAutoLabs/PyAutoMind/scripts/health_audit.sh
+#   health audit
+#
+# Override via env vars:
+#   PYAUTO_AUDIT_ROOT         scan root (default $HOME/Code/PyAutoLabs)
+#   PYAUTO_AUDIT_STASH_DAYS   stash age threshold in days (default 14)
+#   PYAUTO_AUDIT_BRANCH_DAYS  branch age threshold in days (default 30)
+
+PYAUTO_AUDIT_ROOT="${PYAUTO_AUDIT_ROOT:-$HOME/Code/PyAutoLabs}"
+PYAUTO_AUDIT_STASH_DAYS="${PYAUTO_AUDIT_STASH_DAYS:-14}"
+PYAUTO_AUDIT_BRANCH_DAYS="${PYAUTO_AUDIT_BRANCH_DAYS:-30}"
+
+_health_audit() {
+  local root="$PYAUTO_AUDIT_ROOT"
+  if [[ ! -d "$root" ]]; then
+    echo "health audit: $root does not exist" >&2
+    return 1
+  fi
+
+  local now stash_thresh branch_thresh
+  now=$(date +%s)
+  stash_thresh=$(( PYAUTO_AUDIT_STASH_DAYS * 86400 ))
+  branch_thresh=$(( PYAUTO_AUDIT_BRANCH_DAYS * 86400 ))
+
+  # Section 1: non-git directories. Skip prefixes are hardcoded — if the
+  # legitimate exceptions ever exceed 3-4 patterns, switch to a snooze file.
+  local skip_prefixes=("." "z_")
+  local non_git=() dir name skip prefix
+  for dir in "$root"/*/; do
+    [[ ! -d "$dir" ]] && continue
+    name="$(basename "$dir")"
+    skip=false
+    for prefix in "${skip_prefixes[@]}"; do
+      [[ "$name" == "$prefix"* ]] && skip=true && break
+    done
+    [[ "$skip" == "true" ]] && continue
+    [[ -e "$dir.git" ]] && continue
+    non_git+=("$name")
+  done
+
+  # Section 2: old stashes. `--format='%gd|%ad|%ct|%s'` gives the stash ref,
+  # short date, commit timestamp, and subject in one line per entry.
+  local stash_lines=() repo line ref short_date ts subj age
+  for dir in "$root"/*/.git; do
+    [[ -e "$dir" ]] || continue
+    repo="${dir%/.git}"
+    name="$(basename "$repo")"
+    while IFS='|' read -r ref short_date ts subj; do
+      [[ -z "$ts" ]] && continue
+      age=$(( now - ts ))
+      (( age < stash_thresh )) && continue
+      stash_lines+=("$name: $ref ($short_date) $subj")
+    done < <(git -C "$repo" stash list --date=short --format='%gd|%ad|%ct|%s' 2>/dev/null)
+  done
+
+  # Section 3: abandoned local-only branches. `for-each-ref` with empty
+  # `%(upstream)` filters local-only branches, then we age-filter on commit
+  # timestamp. Pipe delimiter (not tab) because bash treats consecutive
+  # whitespace IFS chars as one separator, which would collapse the empty
+  # upstream column into the timestamp.
+  local branch_lines=() branch upstream branch_ts iso
+  for dir in "$root"/*/.git; do
+    [[ -e "$dir" ]] || continue
+    repo="${dir%/.git}"
+    name="$(basename "$repo")"
+    while IFS='|' read -r branch upstream branch_ts; do
+      [[ -z "$branch" ]] && continue
+      [[ -n "$upstream" ]] && continue
+      age=$(( now - branch_ts ))
+      (( age < branch_thresh )) && continue
+      iso=$(date -d "@$branch_ts" +%Y-%m-%d 2>/dev/null)
+      branch_lines+=("$name: $branch (last: $iso)")
+    done < <(git -C "$repo" for-each-ref --format='%(refname:short)|%(upstream)|%(committerdate:unix)' refs/heads/ 2>/dev/null)
+  done
+
+  # Output. Sections suppressed when empty; each prints its own header.
+  local printed=false
+  if (( ${#non_git[@]} > 0 )); then
+    echo "Non-git directories under $root:"
+    for name in "${non_git[@]}"; do echo "  $name/"; done
+    printed=true
+  fi
+  if (( ${#stash_lines[@]} > 0 )); then
+    [[ "$printed" == "true" ]] && echo ""
+    echo "Old stashes (>$PYAUTO_AUDIT_STASH_DAYS days):"
+    for line in "${stash_lines[@]}"; do echo "  $line"; done
+    printed=true
+  fi
+  if (( ${#branch_lines[@]} > 0 )); then
+    [[ "$printed" == "true" ]] && echo ""
+    echo "Abandoned local-only branches (no upstream, last commit >$PYAUTO_AUDIT_BRANCH_DAYS days):"
+    for line in "${branch_lines[@]}"; do echo "  $line"; done
+    printed=true
+  fi
+  [[ "$printed" == "false" ]] && echo "health audit: clean (no findings under $root)"
+  return 0
+}

scripts/health_release.sh

@@ -0,0 +1,215 @@
+#!/usr/bin/env bash
+# health_release.sh — release-prep run dashboard.
+#
+# Defines `_health_release` (run via `health release`) that reads the latest
+# PyAutoBuild full release-prep run (the one symlinked from
+# PyAutoBuild/test_results/latest/) and prints a dashboard:
+#
+#   - Run timestamp + path + ready/not-ready verdict + total duration
+#   - Per-workspace pass / fail / skipped / timeout / duration table
+#   - Failure counts grouped by classification
+#   - Top-25 slowest scripts (any status) — surfaces timing regressions
+#     before they cross the timeout threshold
+#   - Slow-skip / needs-fix banner counts
+#   - Pointer to triage.md if present (free-form analytical clustering)
+#
+# Usage (normally sourced via ~/.bashrc, run through the `health` dispatcher):
+#   source ~/Code/PyAutoLabs/PyAutoMind/scripts/health_release.sh
+#   health release
+#
+# Override the run path (e.g. to inspect a specific historical run) by passing
+# it as the first argument:
+#   health release ~/Code/PyAutoLabs/PyAutoBuild/test_results/runs/2026-04-29T14-48-47Z
+#
+# Sibling helpers: health-report / health-json / health-triage open the last
+# run's report.md / report.json / triage.md.
+#
+# Note: distinct from the Claude `/health full` command (the conversational
+# layer over the same run artefacts). This function prints straight to stdout,
+# no Claude needed.
+
+PYAUTO_STATUS_FULL_DEFAULT="${PYAUTO_STATUS_FULL_DEFAULT:-$HOME/Code/PyAutoLabs/PyAutoBuild/test_results/latest}"
+
+_health_release() {
+  local run_dir="${1:-$PYAUTO_STATUS_FULL_DEFAULT}"
+
+  if [[ ! -e "$run_dir" ]]; then
+    cat >&2 <<EOF
+health release: no run found at $run_dir
+
+To produce one, from PyAutoBuild root:
+  source ../activate.sh
+  python autobuild/run_all.py
+EOF
+    return 1
+  fi
+
+  # Resolve symlink so the printed path is the actual run dir.
+  run_dir="$(readlink -f "$run_dir")"
+
+  local report_json="$run_dir/report.json"
+  if [[ ! -f "$report_json" ]]; then
+    echo "health release: $report_json missing — run incomplete?" >&2
+    return 1
+  fi
+
+  python3 - "$run_dir" <<'PY'
+import json
+import sys
+from pathlib import Path
+
+run_dir = Path(sys.argv[1])
+with open(run_dir / "report.json") as f:
+    r = json.load(f)
+
+ready    = r.get("ready")
+total    = float(r.get("total_duration_seconds", 0.0) or 0.0)
+summary  = r.get("summary", {}) or {}
+n_pass   = summary.get("passed", 0)
+n_fail   = summary.get("failed", 0)
+n_skip   = summary.get("skipped", 0)
+n_to     = summary.get("timeout", 0)
+
+GREEN = "\033[32m"
+RED   = "\033[31m"
+YEL   = "\033[33m"
+DIM   = "\033[2m"
+RST   = "\033[0m"
+
+verdict = f"{GREEN}READY{RST}" if ready else f"{RED}NOT READY{RST}"
+print(f"{'=' * 76}")
+print(f" PyAuto Status Full")
+print(f"{'=' * 76}")
+print(f"Run:    {r.get('run_label','')}")
+print(f"Path:   {run_dir}")
+print(f"Status: {verdict}  (passed: {n_pass}, failed: {n_fail}, skipped: {n_skip}, timeout: {n_to})")
+print(f"Total:  {total:.1f}s ({total/60:.1f} min)")
+print()
+
+# Per-workspace
+print("Per-workspace")
+print("-" * 76)
+print(f"{'Workspace':<22} {'Passed':>6} {'Failed':>6} {'Skipped':>7} {'Timeout':>7} {'Duration':>10}")
+pp  = r.get("per_project", {}) or {}
+ppd = r.get("per_project_duration_seconds", {}) or {}
+for proj in sorted(pp.keys()):
+    c = pp[proj]
+    f = c.get("failed", 0)
+    t = c.get("timeout", 0)
+    color = GREEN if (f == 0 and t == 0) else RED
+    print(
+        f"{color}{proj:<22}{RST} "
+        f"{c.get('passed',0):>6} {f:>6} "
+        f"{c.get('skipped',0):>7} {t:>7} "
+        f"{ppd.get(proj,0):>9.1f}s"
+    )
+print()
+
+# Failures by classification
+failures = r.get("failures", []) or []
+if failures:
+    by_class = {}
+    for fr in failures:
+        cls = fr.get("classification", "unknown")
+        by_class.setdefault(cls, []).append(fr)
+    labels = {
+        "source_code_bug":  "Source code bugs",
+        "workspace_issue":  "Workspace issues",
+        "workspace_data":   "Missing data files",
+        "environment":      "Environment issues",
+        "timeout":          "Timeouts",
+        "known_numerical":  "Known numerical",
+        "unknown":          "Unclassified",
+    }
+    print(f"Failures by classification ({len(failures)} total)")
+    print("-" * 76)
+    for cls in sorted(by_class.keys(), key=lambda c: -len(by_class[c])):
+        items = by_class[cls]
+        print(f"  {labels.get(cls, cls):<22} {len(items)}")
+    print()
+
+# Slowest 25
+slowest = r.get("slowest", []) or []
+if slowest:
+    print(f"Slowest {len(slowest)} scripts")
+    print("-" * 76)
+    print(f"{'Duration':>9} {'Status':<8} {'Project':<16} Script")
+    for s in slowest:
+        proj  = s.get("project", "")
+        stat  = s.get("status", "")
+        fil   = s.get("file", "")
+        # Trim absolute paths to last 3 segments for readability.
+        short = "/".join(fil.split("/")[-3:])
+        dur   = float(s.get("duration_seconds", 0.0) or 0.0)
+        color = RED if stat in ("failed", "timeout") else (YEL if dur > 180 else "")
+        print(f"{color}{dur:>8.1f}s {stat:<8} {proj:<16} {short}{RST}")
+    print()
+
+# Parked scripts banners
+slow_skips = r.get("slow_skips") or []
+nf_skips   = r.get("needs_fix_skips") or []
+if slow_skips or nf_skips:
+    print("Parked scripts (workspace no_run.yaml banners)")
+    print("-" * 76)
+    if slow_skips:
+        print(f"  SLOW skips:      {len(slow_skips)}  (need performance fix)")
+    if nf_skips:
+        print(f"  NEEDS_FIX skips: {len(nf_skips)}  (parked broken)")
+    print()
+
+# Pointers
+print("Pointers")
+print("-" * 76)
+print(f"  Markdown report:  {run_dir}/report.md       {DIM}(health-report){RST}")
+print(f"  Run JSON:         {run_dir}/report.json     {DIM}(health-json){RST}")
+triage = run_dir / "triage.md"
+if triage.exists():
+    print(f"  {GREEN}Triage notes:     {triage}{RST}  {DIM}(health-triage){RST}")
+PY
+}
+
+# _pyauto_run_file <subpath> [run-dir-arg] — resolve a file inside the latest
+# (or supplied) run directory. Used by the pyauto-{report,json,triage} viewers.
+_pyauto_run_file() {
+  local subpath="$1"
+  local run_dir="${2:-$PYAUTO_STATUS_FULL_DEFAULT}"
+
+  if [[ ! -e "$run_dir" ]]; then
+    echo "pyauto: no run found at $run_dir" >&2
+    return 1
+  fi
+  run_dir="$(readlink -f "$run_dir")"
+
+  local target="$run_dir/$subpath"
+  if [[ ! -f "$target" ]]; then
+    echo "pyauto: $target missing" >&2
+    return 1
+  fi
+  printf '%s' "$target"
+}
+
+# health-report [run-dir] — view report.md in the pager.
+health-report() {
+  local f
+  f="$(_pyauto_run_file report.md "$1")" || return 1
+  "${PAGER:-less}" "$f"
+}
+
+# health-json [run-dir] — view report.json. Uses jq for color + paging when
+# available, falls back to plain cat otherwise.
+health-json() {
+  local f
+  f="$(_pyauto_run_file report.json "$1")" || return 1
+  if command -v jq >/dev/null 2>&1; then
+    jq -C . "$f" | "${PAGER:-less}" -R
+  else
+    "${PAGER:-less}" "$f"
+  fi
+}
+
+# health-triage [run-dir] — view triage.md in the pager.
+health-triage() {
+  local f
+  f="$(_pyauto_run_file triage.md "$1")" || return 1
+  "${PAGER:-less}" "$f"
+}