Merge pull request #46 from PyAutoLabs/claude/g-heart-green-fable-opus-uuiaqf

docs: fix dead internal references (hygiene refs tier)

Author: Jammy2211

notebooks/chapter_1_introduction/tutorial_1_grids_and_galaxies.ipynb

@@ -1087,7 +1087,7 @@
     "adaptive over sampling scheme which high accuracy across all use cases.\n",
     "\n",
     "Once you are more experienced, you should read up on over-sampling in more detail via \n",
-    "the `autogalaxy_workspace/*/guides/over_sampling.ipynb` notebook."
+    "the `autogalaxy_workspace/*/guides/advanced/over_sampling.ipynb` notebook."
    ]
   }
  ],

notebooks/chapter_2_modeling/tutorial_1_non_linear_search.ipynb

@@ -497,7 +497,7 @@
     "fitted the data.\n",
     "\n",
     "A detailed step-by-step visual guide of the likelihood function is provided \n",
-    "at `autogalaxy_workspace/*/imaging/log_likelihood_function/parametric.ipynb`."
+    "at `autogalaxy_workspace/*/imaging/likelihood_function.ipynb`."
    ]
   },
   {

notebooks/chapter_2_modeling/tutorial_2_practicalities.ipynb

@@ -212,7 +212,7 @@
     "all calculations use an adaptive over sampling scheme which ensures high accuracy and precision.\n",
     "\n",
     "Once you are more experienced, you should read up on over-sampling in more detail via \n",
-    "the `autogalaxy_workspace/*/guides/over_sampling.ipynb` notebook."
+    "the `autogalaxy_workspace/*/guides/advanced/over_sampling.ipynb` notebook."
    ]
   },
   {

notebooks/chapter_2_modeling/tutorial_3_realism_and_complexity.ipynb

@@ -169,7 +169,7 @@
     "__Over Sampling__\n",
     "\n",
     "Apply adaptive over sampling to ensure the calculation is accurate, you can read up on over-sampling in more detail via \n",
-    "the `autogalaxy_workspace/*/guides/over_sampling.ipynb` notebook."
+    "the `autogalaxy_workspace/*/guides/advanced/over_sampling.ipynb` notebook."
    ]
   },
   {

notebooks/chapter_2_modeling/tutorial_4_dealing_with_failure.ipynb

@@ -170,7 +170,7 @@
     "__Over Sampling__\n",
     "\n",
     "Apply adaptive over sampling to ensure the calculation is accurate, you can read up on over-sampling in more detail via \n",
-    "the `autogalaxy_workspace/*/guides/over_sampling.ipynb` notebook."
+    "the `autogalaxy_workspace/*/guides/advanced/over_sampling.ipynb` notebook."
    ]
   },
   {

notebooks/chapter_2_modeling/tutorial_5_linear_profiles.ipynb

@@ -184,7 +184,7 @@
     "__Over Sampling__\n",
     "\n",
     "Apply adaptive over sampling to ensure the calculation is accurate, you can read up on over-sampling in more detail via \n",
-    "the `autogalaxy_workspace/*/guides/over_sampling.ipynb` notebook."
+    "the `autogalaxy_workspace/*/guides/advanced/over_sampling.ipynb` notebook."
    ]
   },
   {
@@ -820,7 +820,7 @@
     "features of a galaxy. They do so over a wide range of scales, and can often represent features in source galaxies \n",
     "that a single Sersic function or MGE cannot.\n",
     "\n",
-    "An example using shapelets is given at `autogalaxy_workspace/scripts/modeling/imaging/features/shapelets.py`.\n",
+    "An example using shapelets is given at `autogalaxy_workspace/scripts/imaging/features/shapelets/modeling.py`.\n",
     " \n",
     "Feel free to experiment with using shapelets as the galaxy by yourself. However they incur higher computational \n",
     "overheads than the MGE and include a free parameter which governs the size of the basis functions and therefore source,\n",

notebooks/chapter_2_modeling/tutorial_6_masking.ipynb

@@ -162,7 +162,7 @@
     "__Over Sampling__\n",
     "\n",
     "Apply adaptive over sampling to ensure the calculation is accurate, you can read up on over-sampling in more detail via \n",
-    "the `autogalaxy_workspace/*/guides/over_sampling.ipynb` notebook."
+    "the `autogalaxy_workspace/*/guides/advanced/over_sampling.ipynb` notebook."
    ]
   },
   {

notebooks/chapter_4_pixelizations/tutorial_3_inversions.ipynb

@@ -395,7 +395,7 @@
     "__Detailed Explanation__\n",
     "\n",
     "If you are interested in a more detailed description of how inversions work, then checkout the file\n",
-    "`autogalaxy_workspace/*/imaging/log_likelihood_function/inversion.ipynb` which gives a visual step-by-step\n",
+    "`autogalaxy_workspace/*/imaging/features/pixelization/likelihood_function.ipynb` which gives a visual step-by-step\n",
     "guide of the process alongside equations and references to literature on the subject."
    ]
   }

notebooks/simulators/sersic.ipynb

@@ -22,7 +22,7 @@
     "\n",
     "__Start Here Notebook__\n",
     "\n",
-    "If any code in this script is unclear, refer to the `simulators/start_here.ipynb` notebook."
+    "If any code in this script is unclear, refer to the `simulators/simple.ipynb` notebook."
    ]
   },
   {

notebooks/simulators/sersic_x2.ipynb

@@ -30,7 +30,7 @@
     "\n",
     "__Start Here Notebook__\n",
     "\n",
-    "If any code in this script is unclear, refer to the `simulators/start_here.ipynb` notebook."
+    "If any code in this script is unclear, refer to the `simulators/simple.ipynb` notebook."
    ]
   },
   {