diff --git a/.editorconfig b/.editorconfig index 7995f85e491..16534756bfc 100644 --- a/.editorconfig +++ b/.editorconfig @@ -1,4 +1,11 @@ -[*.cs] +# Top-most EditorConfig file +root = true + +# All files - UTF-8 without BOM +[*] +charset = utf-8 + +[*.cs] # IDE0011: Add braces csharp_prefer_braces = true diff --git a/.vscode/settings.json b/.vscode/settings.json new file mode 100644 index 00000000000..42a0e79e9bf --- /dev/null +++ b/.vscode/settings.json @@ -0,0 +1,4 @@ +{ + "dotnet.preferCSharpExtension": true, + "dotnet.defaultSolution": "pwiz_tools/Skyline/Skyline.sln" +} \ No newline at end of file diff --git a/ThermoMethod.bat b/ThermoMethod.bat new file mode 100644 index 00000000000..b16ab33dc41 --- /dev/null +++ b/ThermoMethod.bat @@ -0,0 +1 @@ +C:\proj\review\pwiz_tools\Skyline\bin\x64\Debug\Method\Thermo\BuildThermoMethod.exe -t -m "E:\test\20250212_ThermoMethod\ThoriumMethod\60SPD_PQ500PRTC_ToAlignTemplate.meth" "E:\test\20250212_ThermoMethod\ThoriumMethod\13xjtwsa.qkw\transitions.txt" \ No newline at end of file diff --git a/WORKFLOW.md b/WORKFLOW.md new file mode 100644 index 00000000000..af6914f94fc --- /dev/null +++ b/WORKFLOW.md @@ -0,0 +1,422 @@ +# Skyline Git Workflow & Branch Strategy + +This document outlines the Git branch strategy and workflow for the Skyline project, including guidelines for LLM tools working on branches. + +## Branch Strategy + +### Master Branch +- **Purpose**: Stable releases for Skyline-daily builds +- **Protection**: Direct pushes require review +- **Merges**: Only from release branches or completed work branches +- **Naming**: `master` + +### Release Branches +- **Purpose**: Release preparation and stabilization +- **Naming**: `Skyline/skyline_YY_N` (e.g., `Skyline/skyline_25_1`) +- **Lifecycle**: Created from master, merged back to master after release +- **Usage**: Bug fixes, release preparation, final testing + +### Work Branches +- **Purpose**: Feature development, refactoring, bug fixes +- **Naming**: `Skyline/work/YYYYMMDD_description` (e.g., `Skyline/work/20251010_webclient_replacement`) +- **Lifecycle**: Created from master, merged to master when complete +- **Usage**: All development work, including LLM-assisted changes + +## TODO File System + +### Overview +The TODO file system enables seamless context management for LLM-assisted development, from initial planning through branch completion and archival. + +### TODO Directory Structure + +``` +/ + todos/ + active/ # Currently being worked on (committed to branch) + completed/ # Recently completed (keep 1-3 months for reference) + backlog/ # Ready to start, fully planned + archive/ # Old completed work (>3 months old or as needed) +``` + +### TODO File Naming Convention + +**Format**: `TODO-[YYYYMMDD_].md` + +- **Branch specifier**: Lowercase words separated by underscores (matches branch name after date) +- **No date prefix**: Branch-ready, planning phase (lives in `todos/backlog/`) +- **With date prefix**: Active branch, dated with branch creation date (lives in `todos/active/`, committed to branch) + +**Examples**: +- `todos/backlog/TODO-utf8_no_bom.md` - Branch-ready, not yet created +- `todos/active/TODO-20251015_utf8_no_bom.md` - Active branch created 2025-10-15 +- `todos/completed/TODO-20251010_webclient_replacement.md` - Recently merged work + +### TODO File Lifecycle + +``` +┌─────────────────────────────────────────────────────────────┐ +│ Phase 1: Planning (todos/backlog/) │ +├─────────────────────────────────────────────────────────────┤ +│ File: TODO-.md │ +│ Status: Branch-ready, contains scope and task breakdown │ +│ Location: todos/backlog/, committed to master │ +└─────────────────────────────────────────────────────────────┘ + │ + ▼ Create branch +┌─────────────────────────────────────────────────────────────┐ +│ Phase 2: Active Development (todos/active/) │ +├─────────────────────────────────────────────────────────────┤ +│ File: TODO-YYYYMMDD_.md │ +│ Status: Renamed with date, moved to active/, on branch │ +│ Updates: Modified with every commit │ +│ Purpose: Track progress, enable LLM context switching │ +└─────────────────────────────────────────────────────────────┘ + │ + ▼ Work complete, PR merged +┌─────────────────────────────────────────────────────────────┐ +│ Phase 3: Completed (todos/completed/) │ +├─────────────────────────────────────────────────────────────┤ +│ File: Moved to todos/completed/ as final commit on branch │ +│ Status: Includes completion summary, merged to master │ +│ Purpose: Documentation, reference for future work │ +│ Retention: Keep 1-3 months for reference │ +└─────────────────────────────────────────────────────────────┘ + │ + ▼ After 1-3 months +┌─────────────────────────────────────────────────────────────┐ +│ Phase 4: Archived (todos/archive/) │ +├─────────────────────────────────────────────────────────────┤ +│ File: Moved to todos/archive/ or deleted (in Git history) │ +│ Status: Historical reference only │ +│ Purpose: Reduce clutter, preserved in Git forever │ +└─────────────────────────────────────────────────────────────┘ +``` + +### TODO File Structure (Backlog) + +For files **in todos/backlog/** (planning phase): + +```markdown +# TODO-.md + +## Branch Information (Future) +- **Branch**: Not yet created - will be `Skyline/work/YYYYMMDD_` +- **Objective**: Brief description + +## Background +Context and rationale for the work + +## Task Checklist +### Phase 1: [Name] +- [ ] Task 1 +- [ ] Task 2 + +### Phase 2: [Name] +- [ ] Task 3 +- [ ] Task 4 + +## Tools & Scripts +References to existing tools/scripts + +## Risks & Considerations +Potential issues and mitigation + +## Success Criteria +How to know work is complete + +## Handoff Prompt for Branch Creation +Template for LLM to create branch and begin work +``` + +### TODO File Structure (Active) + +For files **in todos/active/** (active branch): + +```markdown +# TODO-YYYYMMDD_.md + +## Branch Information +- **Branch**: Skyline/work/YYYYMMDD_ +- **Created**: YYYY-MM-DD +- **Objective**: Brief description + +## Task Checklist +### ✅ Completed +- [x] Task 1 +- [x] Task 2 + +### 🔄 In Progress +- [ ] Task 3 + +### 📋 Remaining +- [ ] Task 4 +- [ ] Task 5 + +## Context for Next Session +Current state, key decisions, important files + +## Handoff Prompt for New LLM Session +Template for seamless context transfer + +## Notes for Future Sessions +Patterns established, key decisions made +``` + +### TODO File Structure (Completed) + +For files **in todos/completed/** (after merge): + +Add this **final section** before moving to completed/: + +```markdown +## ✅ Completion Summary + +**Branch**: `Skyline/work/YYYYMMDD_` +**PR**: #XXXX +**Merged**: YYYY-MM-DD +**TeamCity Results**: [Summary of test results] + +**What Was Actually Done**: +- (Brief summary of actual changes, may differ from plan) + +**Unexpected Findings**: +- (Bugs found, scope changes, lessons learned) + +**Follow-up Work Created**: +- (Links to new TODO files spawned from this work) + +**Key Files Modified**: +- (List of primary files changed) +``` + +## LLM Tool Guidelines + +### Starting a New Session +1. **Read the TODO file** - Understand current branch context and objectives +2. **Review recent commits** - Understand what has been done +3. **Check project conventions** - Read `MEMORY.md` for essential context +4. **Understand the scope** - Confirm what remains to be done + +### During Development +1. **Update TODO with every commit** - Track progress and decisions +2. **Follow coding standards** - Use `STYLEGUIDE.md` for style guidance +3. **Write appropriate tests** - Ensure code quality and regression prevention +4. **Use DRY principles** - Avoid duplication in long-lived codebase +5. **Handle exceptions properly** - Use established patterns for error handling + +### Context Switching +When switching between LLM tools or sessions: + +1. **Document current state** - Update TODO file with exact progress +2. **Note key decisions** - Record architectural choices and rationale +3. **List modified files** - Help next session understand scope +4. **Provide handoff prompt** - Include context for seamless transition + +### Example Handoff Prompt Template +``` +I'm working on [branch_name] implementing [objective]. + +Current status: [what's been completed] +Next steps: [what remains to be done] +Key files: [list of important files] +Decisions made: [architectural choices] + +The TODO file in todos/active/ contains full context. Please read it first, then continue with [specific next task]. +``` + +## Branch Lifecycle Workflows + +**IMPORTANT**: All TODO files in `todos/` are Git-tracked. Always use Git commands (`git mv`, `git add`, `git commit`) when creating, moving, or modifying TODO files. Using regular file system operations (PowerShell `Move-Item`, bash `mv`, etc.) will not properly track changes in Git history. + +### Workflow 1: Creating Branch from Backlog TODO + +When you have a branch-ready TODO file (e.g., `todos/backlog/TODO-utf8_no_bom.md`): + +**Step 1: Create branch** +```bash +git checkout master +git pull origin master +git checkout -b Skyline/work/20251015_utf8_no_bom # Use today's date +``` + +**Step 2: Move and rename TODO file with Git** +```bash +# IMPORTANT: Use git mv to preserve Git history when moving tracked files +git mv todos/backlog/TODO-utf8_no_bom.md todos/active/TODO-20251015_utf8_no_bom.md +``` + +**Step 3: Update TODO file header** +- Change "Branch Information (Future)" to "Branch Information" +- Fill in actual branch name and creation date +- Update any "will be" to actual values + +**Step 4: Commit TODO to branch** +```bash +git add todos/ +git commit -m "Start utf8_no_bom work - move TODO to active" +git push -u origin Skyline/work/20251015_utf8_no_bom +``` + +### Workflow 2: Creating Branch and TODO Together + +When starting fresh without a pre-existing TODO: + +**Step 1: Create branch** +```bash +git checkout master +git pull origin master +git checkout -b Skyline/work/20251015_new_feature +``` + +**Step 2: Create TODO file in active/** +```bash +# Create todos/active/TODO-20251015_new_feature.md with structure from template above +``` + +**Step 3: Commit TODO to branch** +```bash +git add todos/active/TODO-20251015_new_feature.md +git commit -m "Initial TODO for new_feature" +git push -u origin Skyline/work/20251015_new_feature +``` + +### Workflow 3: Daily Development + +```bash +# Make code changes +# Update todos/active/TODO-YYYYMMDD_description.md (mark tasks complete, update context) +git add . +git commit -m "Descriptive message of changes" +git push +``` + +**IMPORTANT**: Update the TODO file with **every commit** to track: +- Which tasks were completed +- Key decisions made +- Files modified +- Any blockers or issues encountered + +### Workflow 4: Completing Work and Merging + +**Step 1: Final updates to TODO** +```bash +# Add completion summary to TODO file +# Document what was actually done, bugs found, follow-up work +git add todos/active/TODO-YYYYMMDD_description.md +git commit -m "Add completion summary to TODO" +git push +``` + +**Step 2: Move TODO to completed/ with Git** +```bash +# IMPORTANT: Use git mv to preserve Git history when moving tracked files +git mv todos/active/TODO-YYYYMMDD_description.md todos/completed/TODO-YYYYMMDD_description.md +git commit -m "Move TODO to completed - ready for merge" +git push +``` + +**Step 3: Create pull request** +- Document all changes and testing in PR description +- Reference any related issues +- Link to the completed TODO file for full context + +**Step 4: After merge to master** +```bash +git checkout master +git pull origin master +git branch -d Skyline/work/YYYYMMDD_description # Delete local branch +``` + +**Step 5: Periodic cleanup (monthly or as needed)** +```bash +# Move old completed TODOs (>3 months) to archive or delete +git mv todos/completed/TODO-20240715_old_work.md todos/archive/ +# Or simply delete if no longer needed (preserved in Git history) +git rm todos/completed/TODO-20240715_old_work.md +``` + +### Workflow 5: Creating Backlog TODO (Planning) + +When you want to plan future work without creating a branch: + +**Step 1: Create TODO in backlog/** +```bash +# Create todos/backlog/TODO-new_feature.md with planning structure +``` + +**Step 2: Commit to master** +```bash +git checkout master +git add todos/backlog/TODO-new_feature.md +git commit -m "Add backlog TODO for new_feature planning" +git push origin master +``` + +This makes the planned work visible to the team and LLM tools. + +## Best Practices + +### TODO File Management +- **Backlog TODOs**: Commit to master for visibility, cull items >6 months old +- **Active TODOs**: Update with every commit, keep context fresh +- **Completed TODOs**: Retain 1-3 months for reference and knowledge transfer +- **Archive**: Move or delete old completed work, Git history preserves everything + +### Commit Messages +- Use clear, descriptive messages +- Reference issue numbers when applicable +- Keep commits focused and atomic +- Update TODO file with each commit + +### Testing +- All new code must have appropriate tests +- Run existing tests to ensure no regressions +- Use translation-proof assertions +- Follow DRY principles in test code + +### Documentation +- Update relevant documentation +- Add XML documentation for public APIs +- Keep comments focused and meaningful +- Update README.md when adding new features + +### Code Quality +- Follow established coding standards +- Use consistent naming conventions +- Avoid code duplication (DRY principle) +- Handle exceptions appropriately +- Maintain backward compatibility + +## Emergency Procedures + +### Hotfixes +For critical production issues: +1. Create branch from master: `Skyline/hotfix/YYYYMMDD_description` +2. Make minimal fix +3. Test thoroughly +4. Merge directly to master +5. Cherry-pick to release branches if needed + +### Rollbacks +If issues are discovered after merge: +1. Create rollback branch: `Skyline/rollback/YYYYMMDD_description` +2. Revert problematic commits +3. Test rollback thoroughly +4. Merge to master +5. Document lessons learned + +## Integration with CI/CD + +### Automated Testing +- All branches run automated tests on push +- Master branch runs full test suite +- Work branches run relevant test subsets +- Failed tests block merge to master + +### Build Verification +- Automated builds verify compilation +- Performance regression detection +- Memory leak detection +- Cross-platform compatibility testing + +This workflow ensures consistent development practices, enables effective collaboration between human developers and AI tools, and maintains code quality in the long-lived Skyline project. diff --git a/pwiz.sln b/pwiz.sln index 8aef2733e87..2b4b5daa2e8 100644 --- a/pwiz.sln +++ b/pwiz.sln @@ -1,4 +1,4 @@ - + Microsoft Visual Studio Solution File, Format Version 12.00 # Visual Studio 15 VisualStudioVersion = 15.0.27703.2026 diff --git a/pwiz.vcxproj b/pwiz.vcxproj index 576fd9b8fa5..ec13e3c9487 100644 --- a/pwiz.vcxproj +++ b/pwiz.vcxproj @@ -1,4 +1,4 @@ - + diff --git a/pwiz.vcxproj.filters b/pwiz.vcxproj.filters index 78f1c5ea5f8..e3a449a6e0f 100644 --- a/pwiz.vcxproj.filters +++ b/pwiz.vcxproj.filters @@ -1,4 +1,4 @@ - + diff --git a/pwiz/utility/bindings/CLI/example/pwizCLI.csproj b/pwiz/utility/bindings/CLI/example/pwizCLI.csproj index a66ca936ffd..4f2c95f63c0 100644 --- a/pwiz/utility/bindings/CLI/example/pwizCLI.csproj +++ b/pwiz/utility/bindings/CLI/example/pwizCLI.csproj @@ -1,4 +1,4 @@ - + Debug diff --git a/pwiz/utility/bindings/CLI/example/pwizCLI.sln b/pwiz/utility/bindings/CLI/example/pwizCLI.sln index 9c080b4e50c..85c3747f8db 100644 --- a/pwiz/utility/bindings/CLI/example/pwizCLI.sln +++ b/pwiz/utility/bindings/CLI/example/pwizCLI.sln @@ -1,4 +1,4 @@ - + Microsoft Visual Studio Solution File, Format Version 12.00 # Visual Studio 2013 VisualStudioVersion = 12.0.30110.0 diff --git a/pwiz/utility/misc/VendorReaderTestHarness.cpp b/pwiz/utility/misc/VendorReaderTestHarness.cpp index 105929d0ee2..9e6f3e059f2 100644 --- a/pwiz/utility/misc/VendorReaderTestHarness.cpp +++ b/pwiz/utility/misc/VendorReaderTestHarness.cpp @@ -1,4 +1,4 @@ -// +// // $Id$ // // diff --git a/pwiz_aux/msrc/utility/vendor_api/Bruker/Interop.EDAL.SxS.manifest.dummy b/pwiz_aux/msrc/utility/vendor_api/Bruker/Interop.EDAL.SxS.manifest.dummy index 637591795d6..b67ea57b44a 100644 --- a/pwiz_aux/msrc/utility/vendor_api/Bruker/Interop.EDAL.SxS.manifest.dummy +++ b/pwiz_aux/msrc/utility/vendor_api/Bruker/Interop.EDAL.SxS.manifest.dummy @@ -1,4 +1,4 @@ - + diff --git a/pwiz_aux/msrc/utility/vendor_api/Bruker/Interop.HSREADWRITELib.SxS.manifest.dummy b/pwiz_aux/msrc/utility/vendor_api/Bruker/Interop.HSREADWRITELib.SxS.manifest.dummy index 639a18c9b51..998c97f5f9d 100644 --- a/pwiz_aux/msrc/utility/vendor_api/Bruker/Interop.HSREADWRITELib.SxS.manifest.dummy +++ b/pwiz_aux/msrc/utility/vendor_api/Bruker/Interop.HSREADWRITELib.SxS.manifest.dummy @@ -1,4 +1,4 @@ - + diff --git a/pwiz_aux/msrc/utility/vendor_api/Shimadzu/ShimadzuReader.cpp b/pwiz_aux/msrc/utility/vendor_api/Shimadzu/ShimadzuReader.cpp index d4a5860b3b0..5e517b9f8ca 100644 --- a/pwiz_aux/msrc/utility/vendor_api/Shimadzu/ShimadzuReader.cpp +++ b/pwiz_aux/msrc/utility/vendor_api/Shimadzu/ShimadzuReader.cpp @@ -1,4 +1,4 @@ -// +// // $Id$ // // diff --git a/pwiz_aux/msrc/utility/vendor_api/UNIFI/UnifiData.cpp b/pwiz_aux/msrc/utility/vendor_api/UNIFI/UnifiData.cpp index 2118e80997d..cee6bdb74e3 100644 --- a/pwiz_aux/msrc/utility/vendor_api/UNIFI/UnifiData.cpp +++ b/pwiz_aux/msrc/utility/vendor_api/UNIFI/UnifiData.cpp @@ -1,4 +1,4 @@ -// +// // $Id$ // // diff --git a/pwiz_aux/msrc/utility/vendor_api/thermo/x86/fileio.manifest b/pwiz_aux/msrc/utility/vendor_api/thermo/x86/fileio.manifest index 36257b49b3d..05fce9d3061 100644 --- a/pwiz_aux/msrc/utility/vendor_api/thermo/x86/fileio.manifest +++ b/pwiz_aux/msrc/utility/vendor_api/thermo/x86/fileio.manifest @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/BiblioSpec/Navigation_only_will_not_build.sln b/pwiz_tools/BiblioSpec/Navigation_only_will_not_build.sln index ba1b43586c3..2059191e2e4 100644 --- a/pwiz_tools/BiblioSpec/Navigation_only_will_not_build.sln +++ b/pwiz_tools/BiblioSpec/Navigation_only_will_not_build.sln @@ -1,4 +1,4 @@ - + Microsoft Visual Studio Solution File, Format Version 12.00 # Visual Studio Version 17 VisualStudioVersion = 17.7.34009.444 diff --git a/pwiz_tools/BiblioSpec/Navigation_only_will_not_build.vcxproj b/pwiz_tools/BiblioSpec/Navigation_only_will_not_build.vcxproj index 65fe31e5eea..052450320af 100644 --- a/pwiz_tools/BiblioSpec/Navigation_only_will_not_build.vcxproj +++ b/pwiz_tools/BiblioSpec/Navigation_only_will_not_build.vcxproj @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/BiblioSpec/Navigation_only_will_not_build.vcxproj.filters b/pwiz_tools/BiblioSpec/Navigation_only_will_not_build.vcxproj.filters index 873d8b8e646..0b901bb2411 100644 --- a/pwiz_tools/BiblioSpec/Navigation_only_will_not_build.vcxproj.filters +++ b/pwiz_tools/BiblioSpec/Navigation_only_will_not_build.vcxproj.filters @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/BiblioSpec/src/modifications.xml b/pwiz_tools/BiblioSpec/src/modifications.xml index bfabab25e52..f016960add8 100644 --- a/pwiz_tools/BiblioSpec/src/modifications.xml +++ b/pwiz_tools/BiblioSpec/src/modifications.xml @@ -1,4 +1,4 @@ - + notCterm diff --git a/pwiz_tools/BiblioSpec/tests/inputs/heavy-label-modifications.xml b/pwiz_tools/BiblioSpec/tests/inputs/heavy-label-modifications.xml index a73e31cd517..4372b5d1b3e 100644 --- a/pwiz_tools/BiblioSpec/tests/inputs/heavy-label-modifications.xml +++ b/pwiz_tools/BiblioSpec/tests/inputs/heavy-label-modifications.xml @@ -1,4 +1,4 @@ - + notCterm diff --git a/pwiz_tools/BiblioSpec/tests/inputs/mqpar1.xml b/pwiz_tools/BiblioSpec/tests/inputs/mqpar1.xml index 4d065407442..981bfae60c0 100644 --- a/pwiz_tools/BiblioSpec/tests/inputs/mqpar1.xml +++ b/pwiz_tools/BiblioSpec/tests/inputs/mqpar1.xml @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/BiblioSpec/tests/inputs/test-mq3-modifications.local.xml b/pwiz_tools/BiblioSpec/tests/inputs/test-mq3-modifications.local.xml index a5c29edaa98..0a0b56d1854 100644 --- a/pwiz_tools/BiblioSpec/tests/inputs/test-mq3-modifications.local.xml +++ b/pwiz_tools/BiblioSpec/tests/inputs/test-mq3-modifications.local.xml @@ -1,4 +1,4 @@ - + anywhere diff --git a/pwiz_tools/Bumbershoot/bumberdash/BumberDash.sln b/pwiz_tools/Bumbershoot/bumberdash/BumberDash.sln index b1b73f8980d..ade0955c247 100644 --- a/pwiz_tools/Bumbershoot/bumberdash/BumberDash.sln +++ b/pwiz_tools/Bumbershoot/bumberdash/BumberDash.sln @@ -1,4 +1,4 @@ - + Microsoft Visual Studio Solution File, Format Version 11.00 # Visual Studio 2010 Project("{2150E333-8FDC-42A3-9474-1A3956D46DE8}") = "Solution Items", "Solution Items", "{7EE15627-F98C-40F5-ACE0-C17E261E029D}" diff --git a/pwiz_tools/Bumbershoot/bumberdash/BumberDash.vsmdi b/pwiz_tools/Bumbershoot/bumberdash/BumberDash.vsmdi index 4a23c4ca872..0c4fae2c04a 100644 --- a/pwiz_tools/Bumbershoot/bumberdash/BumberDash.vsmdi +++ b/pwiz_tools/Bumbershoot/bumberdash/BumberDash.vsmdi @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Bumbershoot/bumberdash/BumberDash/BumberDash.csproj b/pwiz_tools/Bumbershoot/bumberdash/BumberDash/BumberDash.csproj index 434394238e6..cd9f864d511 100644 --- a/pwiz_tools/Bumbershoot/bumberdash/BumberDash/BumberDash.csproj +++ b/pwiz_tools/Bumbershoot/bumberdash/BumberDash/BumberDash.csproj @@ -1,4 +1,4 @@ - + Debug diff --git a/pwiz_tools/Bumbershoot/bumberdash/BumberDash/CometHandler.cs b/pwiz_tools/Bumbershoot/bumberdash/BumberDash/CometHandler.cs index 68e0585413a..3fe16134607 100644 --- a/pwiz_tools/Bumbershoot/bumberdash/BumberDash/CometHandler.cs +++ b/pwiz_tools/Bumbershoot/bumberdash/BumberDash/CometHandler.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections.Generic; using System.Globalization; using System.IO; diff --git a/pwiz_tools/Bumbershoot/bumberdash/BumberDash/Forms/AddJobForm.Designer.cs b/pwiz_tools/Bumbershoot/bumberdash/BumberDash/Forms/AddJobForm.Designer.cs index 76d5860f740..194509070e7 100644 --- a/pwiz_tools/Bumbershoot/bumberdash/BumberDash/Forms/AddJobForm.Designer.cs +++ b/pwiz_tools/Bumbershoot/bumberdash/BumberDash/Forms/AddJobForm.Designer.cs @@ -1,4 +1,4 @@ -// +// // $Id$ // // The contents of this file are subject to the Mozilla Public License diff --git a/pwiz_tools/Bumbershoot/bumberdash/BumberDash/Forms/AddJobForm.cs b/pwiz_tools/Bumbershoot/bumberdash/BumberDash/Forms/AddJobForm.cs index daa8e6e93af..8b9e5a06d0d 100644 --- a/pwiz_tools/Bumbershoot/bumberdash/BumberDash/Forms/AddJobForm.cs +++ b/pwiz_tools/Bumbershoot/bumberdash/BumberDash/Forms/AddJobForm.cs @@ -1,4 +1,4 @@ -// +// // $Id$ // // The contents of this file are subject to the Mozilla Public License diff --git a/pwiz_tools/Bumbershoot/bumberdash/BumberDash/Forms/ConfigForm.Designer.cs b/pwiz_tools/Bumbershoot/bumberdash/BumberDash/Forms/ConfigForm.Designer.cs index c3883684daf..68bc788a151 100644 --- a/pwiz_tools/Bumbershoot/bumberdash/BumberDash/Forms/ConfigForm.Designer.cs +++ b/pwiz_tools/Bumbershoot/bumberdash/BumberDash/Forms/ConfigForm.Designer.cs @@ -1,4 +1,4 @@ -// +// // $Id$ // // The contents of this file are subject to the Mozilla Public License diff --git a/pwiz_tools/Bumbershoot/bumberdash/BumberDash/Forms/ConfigForm.cs b/pwiz_tools/Bumbershoot/bumberdash/BumberDash/Forms/ConfigForm.cs index b1efabb486e..90c00304b0c 100644 --- a/pwiz_tools/Bumbershoot/bumberdash/BumberDash/Forms/ConfigForm.cs +++ b/pwiz_tools/Bumbershoot/bumberdash/BumberDash/Forms/ConfigForm.cs @@ -1,4 +1,4 @@ -// +// // $Id$ // // The contents of this file are subject to the Mozilla Public License diff --git a/pwiz_tools/Bumbershoot/bumberdash/BumberDash/Forms/ConfigWizard.Designer.cs b/pwiz_tools/Bumbershoot/bumberdash/BumberDash/Forms/ConfigWizard.Designer.cs index 184c7661e5e..9cd3e8c3ad7 100644 --- a/pwiz_tools/Bumbershoot/bumberdash/BumberDash/Forms/ConfigWizard.Designer.cs +++ b/pwiz_tools/Bumbershoot/bumberdash/BumberDash/Forms/ConfigWizard.Designer.cs @@ -1,4 +1,4 @@ -namespace BumberDash.Forms +namespace BumberDash.Forms { partial class ConfigWizard { diff --git a/pwiz_tools/Bumbershoot/bumberdash/BumberDash/Forms/ConfigWizard.cs b/pwiz_tools/Bumbershoot/bumberdash/BumberDash/Forms/ConfigWizard.cs index 80c752408e3..29bd5de0dd2 100644 --- a/pwiz_tools/Bumbershoot/bumberdash/BumberDash/Forms/ConfigWizard.cs +++ b/pwiz_tools/Bumbershoot/bumberdash/BumberDash/Forms/ConfigWizard.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections.Generic; using System.ComponentModel; using System.Data; diff --git a/pwiz_tools/Bumbershoot/bumberdash/BumberDash/Forms/ConfigWizard.resx b/pwiz_tools/Bumbershoot/bumberdash/BumberDash/Forms/ConfigWizard.resx index baac04f7a15..2403ed98efc 100644 --- a/pwiz_tools/Bumbershoot/bumberdash/BumberDash/Forms/ConfigWizard.resx +++ b/pwiz_tools/Bumbershoot/bumberdash/BumberDash/Forms/ConfigWizard.resx @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Bumbershoot/idpicker/Local-x86.runsettings b/pwiz_tools/Bumbershoot/idpicker/Local-x86.runsettings index 412e32dc840..dc980c72058 100644 --- a/pwiz_tools/Bumbershoot/idpicker/Local-x86.runsettings +++ b/pwiz_tools/Bumbershoot/idpicker/Local-x86.runsettings @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Bumbershoot/idpicker/Model/BulkInserter.cs b/pwiz_tools/Bumbershoot/idpicker/Model/BulkInserter.cs index a5c056e088e..5a38b7fc1f4 100644 --- a/pwiz_tools/Bumbershoot/idpicker/Model/BulkInserter.cs +++ b/pwiz_tools/Bumbershoot/idpicker/Model/BulkInserter.cs @@ -1,4 +1,4 @@ -// +// // $Id$ // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Bumbershoot/idpicker/Model/Clustering.cs b/pwiz_tools/Bumbershoot/idpicker/Model/Clustering.cs index 58b2fec8f0b..6e23b504a31 100644 --- a/pwiz_tools/Bumbershoot/idpicker/Model/Clustering.cs +++ b/pwiz_tools/Bumbershoot/idpicker/Model/Clustering.cs @@ -1,4 +1,4 @@ -// +// // $Id$ // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Bumbershoot/idpicker/Model/DataFilter.cs b/pwiz_tools/Bumbershoot/idpicker/Model/DataFilter.cs index 6b616618f1f..7134c85b2a7 100644 --- a/pwiz_tools/Bumbershoot/idpicker/Model/DataFilter.cs +++ b/pwiz_tools/Bumbershoot/idpicker/Model/DataFilter.cs @@ -1,4 +1,4 @@ -// +// // $Id$ // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Bumbershoot/idpicker/Model/DataModel.cs b/pwiz_tools/Bumbershoot/idpicker/Model/DataModel.cs index 451ce5591e8..32a4ba72b1a 100644 --- a/pwiz_tools/Bumbershoot/idpicker/Model/DataModel.cs +++ b/pwiz_tools/Bumbershoot/idpicker/Model/DataModel.cs @@ -1,4 +1,4 @@ -// +// // $Id$ // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Bumbershoot/idpicker/Model/DataModel.hbm.xml b/pwiz_tools/Bumbershoot/idpicker/Model/DataModel.hbm.xml index 5be0a088b0b..162f2bbbd7b 100644 --- a/pwiz_tools/Bumbershoot/idpicker/Model/DataModel.hbm.xml +++ b/pwiz_tools/Bumbershoot/idpicker/Model/DataModel.hbm.xml @@ -1,4 +1,4 @@ - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + text/microsoft-resx + + + 1.3 + + + System.Resources.ResXResourceReader, System.Windows.Forms, Version=2.0.3500.0, Culture=neutral, PublicKeyToken=b77a5c561934e089 + + + System.Resources.ResXResourceWriter, System.Windows.Forms, Version=2.0.3500.0, Culture=neutral, PublicKeyToken=b77a5c561934e089 + + + {0}バイトの読み込みに失敗しました。ソースが壊れている可能性があります。 + + + 実行コマンド: + + + パスが空です + + + ディレクトリは削除できません:{0} + + + パスに無効な文字が含まれています:{0} + + + 使用中のファイルは削除できません:{0} + + + 読み取り専用ファイルは削除できません:{0} + + + ファイルを削除するのに十分な権限がありません:{0} + + + ファイルパスが長すぎます:{0} + + + ファイルパスが無効です:{0} + + + ディレクトリを見つけることができませんでした:{0} + + \ No newline at end of file diff --git a/pwiz_tools/Shared/CommonUtil/CommonResources/MessageResources.resx b/pwiz_tools/Shared/CommonUtil/CommonResources/MessageResources.resx new file mode 100644 index 00000000000..b5246c13e41 --- /dev/null +++ b/pwiz_tools/Shared/CommonUtil/CommonResources/MessageResources.resx @@ -0,0 +1,176 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + text/microsoft-resx + + + 1.3 + + + System.Resources.ResXResourceReader, System.Windows.Forms, Version=2.0.3500.0, Culture=neutral, PublicKeyToken=b77a5c561934e089 + + + System.Resources.ResXResourceWriter, System.Windows.Forms, Version=2.0.3500.0, Culture=neutral, PublicKeyToken=b77a5c561934e089 + + + Failed reading {0} bytes. Source may be corrupted. + + + Run command: + + + Failed to copy '{0}' to '{1}' + + + Path is empty + + + Unable to delete directory: {0} + + + Path contains invalid characters: {0} + + + Unable to delete file which is in use: {0} + + + Unable to delete read-only file: {0} + + + Insufficient permission to delete file: {0} + + + File path is too long: {0} + + + File path is invalid: {0} + + + Directory could not be found: {0} + + + The request to {0} timed out. Please try again. + + + No network connection detected. Please check your internet connection and try again. + + + Failed to resolve host {0}. Please check your DNS settings or VPN/proxy. + + + Failed to connect to {0}. Please check your network connection, VPN/proxy, or firewall. + + + The connection was lost during download. Please check your internet connection and try again. + + + The read operation timed out while downloading from {0}. + + + server + + + The requested resource at {0} was not found (HTTP 404). Please verify the URL. + + + The server {0} encountered an internal error (HTTP 500). Please try again later or contact the server administrator. + + + Access to {0} was denied (HTTP 401). Authentication may be required. + + + Access to {0} was forbidden (HTTP 403). You may not have permission to access this resource. + + + Too many requests to {0} (HTTP 429). Please wait before trying again. + + + The server {0} returned an error (HTTP {1}). Please try again or contact support. + + \ No newline at end of file diff --git a/pwiz_tools/Shared/CommonUtil/CommonUtil.csproj b/pwiz_tools/Shared/CommonUtil/CommonUtil.csproj index 18306248f92..4b7143dd567 100644 --- a/pwiz_tools/Shared/CommonUtil/CommonUtil.csproj +++ b/pwiz_tools/Shared/CommonUtil/CommonUtil.csproj @@ -1,4 +1,4 @@ - + Debug diff --git a/pwiz_tools/Shared/CommonUtil/GUI/CommonAlertDlg.Designer.cs b/pwiz_tools/Shared/CommonUtil/GUI/CommonAlertDlg.Designer.cs index 9191544065f..69b95c39ced 100644 --- a/pwiz_tools/Shared/CommonUtil/GUI/CommonAlertDlg.Designer.cs +++ b/pwiz_tools/Shared/CommonUtil/GUI/CommonAlertDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Common.GUI +namespace pwiz.Common.GUI { partial class CommonAlertDlg { diff --git a/pwiz_tools/Shared/CommonUtil/GUI/CommonAlertDlg.cs b/pwiz_tools/Shared/CommonUtil/GUI/CommonAlertDlg.cs index e4963edb794..81be2ae9c44 100644 --- a/pwiz_tools/Shared/CommonUtil/GUI/CommonAlertDlg.cs +++ b/pwiz_tools/Shared/CommonUtil/GUI/CommonAlertDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/GUI/GuiMessages.Designer.cs b/pwiz_tools/Shared/CommonUtil/GUI/GuiMessages.Designer.cs index 2d7393a778b..73463b1ebc9 100644 --- a/pwiz_tools/Shared/CommonUtil/GUI/GuiMessages.Designer.cs +++ b/pwiz_tools/Shared/CommonUtil/GUI/GuiMessages.Designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Shared/CommonUtil/Properties/AssemblyInfo.cs b/pwiz_tools/Shared/CommonUtil/Properties/AssemblyInfo.cs index 34881d5e122..3d53f225513 100644 --- a/pwiz_tools/Shared/CommonUtil/Properties/AssemblyInfo.cs +++ b/pwiz_tools/Shared/CommonUtil/Properties/AssemblyInfo.cs @@ -1,4 +1,4 @@ -using System.Reflection; +using System.Reflection; using System.Runtime.CompilerServices; using System.Runtime.InteropServices; diff --git a/pwiz_tools/Shared/CommonUtil/Properties/Resources.Designer.cs b/pwiz_tools/Shared/CommonUtil/Properties/Resources.Designer.cs index 87e55fc6afb..4bfd72e550d 100644 --- a/pwiz_tools/Shared/CommonUtil/Properties/Resources.Designer.cs +++ b/pwiz_tools/Shared/CommonUtil/Properties/Resources.Designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Shared/CommonUtil/Spectra/SpectrumMetadata.cs b/pwiz_tools/Shared/CommonUtil/Spectra/SpectrumMetadata.cs index 2ea11ddf5ab..1e2654eb26a 100644 --- a/pwiz_tools/Shared/CommonUtil/Spectra/SpectrumMetadata.cs +++ b/pwiz_tools/Shared/CommonUtil/Spectra/SpectrumMetadata.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/Spectra/SpectrumPrecursor.cs b/pwiz_tools/Shared/CommonUtil/Spectra/SpectrumPrecursor.cs index 82ba2bd440d..bbfa573fa1a 100644 --- a/pwiz_tools/Shared/CommonUtil/Spectra/SpectrumPrecursor.cs +++ b/pwiz_tools/Shared/CommonUtil/Spectra/SpectrumPrecursor.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/Assume.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/Assume.cs index 653fb682402..6cd1030e6b9 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/Assume.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/Assume.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/Caching/Producer.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/Caching/Producer.cs index 7f36ca940e0..58452ada1fe 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/Caching/Producer.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/Caching/Producer.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/Caching/Production.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/Caching/Production.cs index 7cdf13d6347..0674b93e2f0 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/Caching/Production.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/Caching/Production.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/Caching/ProductionFacility.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/Caching/ProductionFacility.cs index 28cdf39f740..f973aac7141 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/Caching/ProductionFacility.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/Caching/ProductionFacility.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections.Generic; using System.Linq; using System.Threading; diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/Caching/Receiver.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/Caching/Receiver.cs index e2f4210a7b2..c50f7e6ee41 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/Caching/Receiver.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/Caching/Receiver.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/CenterWinDialog.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/CenterWinDialog.cs index b49b540931e..5402a8f988f 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/CenterWinDialog.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/CenterWinDialog.cs @@ -1,4 +1,4 @@ -// https://stackoverflow.com/a/2576220 +// https://stackoverflow.com/a/2576220 // Winforms-How can I make MessageBox appear centered on MainForm? using System; diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/CommonActionUtil.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/CommonActionUtil.cs index feb0476829d..1274936415d 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/CommonActionUtil.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/CommonActionUtil.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/CommonException.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/CommonException.cs index 89d12d8b008..ee3a2880cf5 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/CommonException.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/CommonException.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/CommonFormEx.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/CommonFormEx.cs index 78134f8e5ee..268bc17853c 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/CommonFormEx.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/CommonFormEx.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/CommonTextUtil.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/CommonTextUtil.cs index 934dca88b30..68582dd43db 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/CommonTextUtil.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/CommonTextUtil.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/ConcurrencyVisualizer.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/ConcurrencyVisualizer.cs index 35e0aaf42dd..10d6f7e0bdd 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/ConcurrencyVisualizer.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/ConcurrencyVisualizer.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/DistinctList.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/DistinctList.cs index 353fb58af3c..e3f2fb01030 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/DistinctList.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/DistinctList.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/FileEx.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/FileEx.cs index a9806023004..3691356d6b1 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/FileEx.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/FileEx.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/FileSize.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/FileSize.cs index 4fd46dbe7d3..25c9b7db003 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/FileSize.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/FileSize.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/FileSizeFormatProvider.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/FileSizeFormatProvider.cs index 0449bfb4a2b..5d6c9579842 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/FileSizeFormatProvider.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/FileSizeFormatProvider.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/FilteredUserMessageWriter.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/FilteredUserMessageWriter.cs index c75ea203b30..a43938f8a82 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/FilteredUserMessageWriter.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/FilteredUserMessageWriter.cs @@ -1,4 +1,4 @@ -/* +/* * Author: David Shteynberg , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/FormUtil.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/FormUtil.cs index 9b1bf7d0509..607746d51a5 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/FormUtil.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/FormUtil.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/IFormView.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/IFormView.cs index 522ad16da69..0bcfb0fa5d6 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/IFormView.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/IFormView.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/IProgressMonitor.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/IProgressMonitor.cs index 75d3b70f134..56e450cc897 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/IProgressMonitor.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/IProgressMonitor.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/Immutable.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/Immutable.cs index b45cefecbb6..22c598a6b96 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/Immutable.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/Immutable.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/ItemDescription.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/ItemDescription.cs index 9baefcd0d95..90de4af3f59 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/ItemDescription.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/ItemDescription.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/LocalizationHelper.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/LocalizationHelper.cs index 0f2f9788744..b3bc23f4e44 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/LocalizationHelper.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/LocalizationHelper.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/MemoryBlockingCollection.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/MemoryBlockingCollection.cs index 443382ebebf..4689bea5add 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/MemoryBlockingCollection.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/MemoryBlockingCollection.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/Messages.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/Messages.cs index d9b091ed487..41c29fb05bf 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/Messages.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/Messages.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/MustDispose.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/MustDispose.cs index 14bce0577a6..1ccf35318b7 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/MustDispose.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/MustDispose.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/PInvoke/Advapi32.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/PInvoke/Advapi32.cs index 6e0fed4ec0c..cabe77cc640 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/PInvoke/Advapi32.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/PInvoke/Advapi32.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2024 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/PInvoke/Gdi32.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/PInvoke/Gdi32.cs index 10d67ff4e4d..dcda103c38d 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/PInvoke/Gdi32.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/PInvoke/Gdi32.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2024 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/PInvoke/Kernel32.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/PInvoke/Kernel32.cs index 8ea5e0fd65c..06ef2fa8dd7 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/PInvoke/Kernel32.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/PInvoke/Kernel32.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2024 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/PInvoke/PInvokeCommon.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/PInvoke/PInvokeCommon.cs index d9081fc1bc0..0d98d237458 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/PInvoke/PInvokeCommon.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/PInvoke/PInvokeCommon.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2024 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/PInvoke/Shell32.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/PInvoke/Shell32.cs index 3bc697f9aba..7a47861feca 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/PInvoke/Shell32.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/PInvoke/Shell32.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2024 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/PInvoke/Shlwapi.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/PInvoke/Shlwapi.cs index a24c428c9e0..f6d0d131635 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/PInvoke/Shlwapi.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/PInvoke/Shlwapi.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2024 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/PInvoke/User32.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/PInvoke/User32.cs index 5ab80cc11f2..136c2444768 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/PInvoke/User32.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/PInvoke/User32.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2024 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/PInvoke/User32Extensions.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/PInvoke/User32Extensions.cs index 8229b353965..d7a10b05a36 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/PInvoke/User32Extensions.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/PInvoke/User32Extensions.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2024 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/ParallelEx.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/ParallelEx.cs index 4cb837f3604..7904cb8e3c6 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/ParallelEx.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/ParallelEx.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/PathEx.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/PathEx.cs index 5eb5c590160..1ee48d1be0f 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/PathEx.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/PathEx.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/PerfUtil.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/PerfUtil.cs index 2550b6624c7..881abed629e 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/PerfUtil.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/PerfUtil.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/PollingCancellationToken.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/PollingCancellationToken.cs index 6e62d9185cc..a02507b990a 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/PollingCancellationToken.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/PollingCancellationToken.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/ProcessEx.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/ProcessEx.cs index 621760d5100..72d13390af2 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/ProcessEx.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/ProcessEx.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/ProcessRunner.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/ProcessRunner.cs index 9bb676f0b44..6f4135b54f6 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/ProcessRunner.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/ProcessRunner.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/ProcessStreamReader.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/ProcessStreamReader.cs index efd13095357..af650851e7e 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/ProcessStreamReader.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/ProcessStreamReader.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/ProducerConsumerWorker.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/ProducerConsumerWorker.cs index 93581b2f2c6..2f74b797215 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/ProducerConsumerWorker.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/ProducerConsumerWorker.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/ProgressHandler.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/ProgressHandler.cs index d1b97db73f4..f2ecaf9b6ad 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/ProgressHandler.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/ProgressHandler.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/ProgressStatus.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/ProgressStatus.cs index 72af25fc7d6..85c7691f7e0 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/ProgressStatus.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/ProgressStatus.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/ProgressStream.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/ProgressStream.cs index fcc20edc1f9..92943b2728c 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/ProgressStream.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/ProgressStream.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/StreamEx.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/StreamEx.cs index 6531d560278..e319d63d3b1 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/StreamEx.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/StreamEx.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/StringPool.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/StringPool.cs index 5fbedf83cc9..38b110abda4 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/StringPool.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/StringPool.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/SubstringFinder.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/SubstringFinder.cs index e0dafed3c43..164a1ba5ba1 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/SubstringFinder.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/SubstringFinder.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/TaskBarProgress.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/TaskBarProgress.cs index ebbf587de7f..d2053e3329d 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/TaskBarProgress.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/TaskBarProgress.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/TempDir.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/TempDir.cs index 33b74835e9e..d326939715a 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/TempDir.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/TempDir.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/TrackAttribute.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/TrackAttribute.cs index cd7d6e12579..42171307b5e 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/TrackAttribute.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/TrackAttribute.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tobias Rohde , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/TreeViewStateRestorer.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/TreeViewStateRestorer.cs index 96faa1f6e40..41ba87a182c 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/TreeViewStateRestorer.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/TreeViewStateRestorer.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Trevor Killeen , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/TypeSafeEnum.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/TypeSafeEnum.cs index a4766ec1625..d98c8502e33 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/TypeSafeEnum.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/TypeSafeEnum.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/CommonUtil/SystemUtil/ValueCache.cs b/pwiz_tools/Shared/CommonUtil/SystemUtil/ValueCache.cs index 94f1251a352..828ad3f6440 100644 --- a/pwiz_tools/Shared/CommonUtil/SystemUtil/ValueCache.cs +++ b/pwiz_tools/Shared/CommonUtil/SystemUtil/ValueCache.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/Crawdad/Crawdad.vcxproj b/pwiz_tools/Shared/Crawdad/Crawdad.vcxproj index 41c296bedce..2e1fa37b56a 100644 --- a/pwiz_tools/Shared/Crawdad/Crawdad.vcxproj +++ b/pwiz_tools/Shared/Crawdad/Crawdad.vcxproj @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Shared/Crawdad/Crawdad.vcxproj.filters b/pwiz_tools/Shared/Crawdad/Crawdad.vcxproj.filters index 9aae4446291..3fc5dcd6f33 100644 --- a/pwiz_tools/Shared/Crawdad/Crawdad.vcxproj.filters +++ b/pwiz_tools/Shared/Crawdad/Crawdad.vcxproj.filters @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Shared/Crawdad/CrawdadSolution.sln b/pwiz_tools/Shared/Crawdad/CrawdadSolution.sln index db7fb3ca429..fdbb4baebba 100644 --- a/pwiz_tools/Shared/Crawdad/CrawdadSolution.sln +++ b/pwiz_tools/Shared/Crawdad/CrawdadSolution.sln @@ -1,4 +1,4 @@ - + Microsoft Visual Studio Solution File, Format Version 12.00 # Visual Studio 15 VisualStudioVersion = 15.0.27703.2026 diff --git a/pwiz_tools/Shared/Lib/DotNetZip/DotNetZip.licenseinfo.xml b/pwiz_tools/Shared/Lib/DotNetZip/DotNetZip.licenseinfo.xml index 8da602051ee..e4e6ffdfa4e 100644 --- a/pwiz_tools/Shared/Lib/DotNetZip/DotNetZip.licenseinfo.xml +++ b/pwiz_tools/Shared/Lib/DotNetZip/DotNetZip.licenseinfo.xml @@ -1,4 +1,4 @@ - + DotNetZip diff --git a/pwiz_tools/Shared/Lib/Microsoft.VC90.CRT/x64/Microsoft.VC90.CRT.manifest b/pwiz_tools/Shared/Lib/Microsoft.VC90.CRT/x64/Microsoft.VC90.CRT.manifest index d29c7309843..744ae0a29e0 100644 --- a/pwiz_tools/Shared/Lib/Microsoft.VC90.CRT/x64/Microsoft.VC90.CRT.manifest +++ b/pwiz_tools/Shared/Lib/Microsoft.VC90.CRT/x64/Microsoft.VC90.CRT.manifest @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Shared/Lib/Microsoft.VC90.CRT/x86/Microsoft.VC90.CRT.manifest b/pwiz_tools/Shared/Lib/Microsoft.VC90.CRT/x86/Microsoft.VC90.CRT.manifest index d17d42ed9ff..93a8ce65243 100644 --- a/pwiz_tools/Shared/Lib/Microsoft.VC90.CRT/x86/Microsoft.VC90.CRT.manifest +++ b/pwiz_tools/Shared/Lib/Microsoft.VC90.CRT/x86/Microsoft.VC90.CRT.manifest @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Shared/Lib/Microsoft.VC90.MFC/x64/Microsoft.VC90.MFC.manifest b/pwiz_tools/Shared/Lib/Microsoft.VC90.MFC/x64/Microsoft.VC90.MFC.manifest index bf2e219771b..3ba1df13bec 100644 --- a/pwiz_tools/Shared/Lib/Microsoft.VC90.MFC/x64/Microsoft.VC90.MFC.manifest +++ b/pwiz_tools/Shared/Lib/Microsoft.VC90.MFC/x64/Microsoft.VC90.MFC.manifest @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Shared/Lib/Microsoft.VC90.MFC/x86/Microsoft.VC90.MFC.manifest b/pwiz_tools/Shared/Lib/Microsoft.VC90.MFC/x86/Microsoft.VC90.MFC.manifest index ae89fa9341e..677d6c8a881 100644 --- a/pwiz_tools/Shared/Lib/Microsoft.VC90.MFC/x86/Microsoft.VC90.MFC.manifest +++ b/pwiz_tools/Shared/Lib/Microsoft.VC90.MFC/x86/Microsoft.VC90.MFC.manifest @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Shared/MSGraph/HeatMapData.cs b/pwiz_tools/Shared/MSGraph/HeatMapData.cs index 2e04dc339e5..cf29da2f7bf 100644 --- a/pwiz_tools/Shared/MSGraph/HeatMapData.cs +++ b/pwiz_tools/Shared/MSGraph/HeatMapData.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/MSGraph/HeatMapGraphPane.cs b/pwiz_tools/Shared/MSGraph/HeatMapGraphPane.cs index 39b53aafd01..87f4b56fb6b 100644 --- a/pwiz_tools/Shared/MSGraph/HeatMapGraphPane.cs +++ b/pwiz_tools/Shared/MSGraph/HeatMapGraphPane.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/MSGraph/LabelBoundsCache.cs b/pwiz_tools/Shared/MSGraph/LabelBoundsCache.cs index 744851b47ea..7359d7c72d7 100644 --- a/pwiz_tools/Shared/MSGraph/LabelBoundsCache.cs +++ b/pwiz_tools/Shared/MSGraph/LabelBoundsCache.cs @@ -1,4 +1,4 @@ -using System.Collections.Generic; +using System.Collections.Generic; using System.Drawing; using ZedGraph; diff --git a/pwiz_tools/Shared/MSGraph/MSGraph.csproj b/pwiz_tools/Shared/MSGraph/MSGraph.csproj index 9fd6688e15d..0cc43d1abc2 100644 --- a/pwiz_tools/Shared/MSGraph/MSGraph.csproj +++ b/pwiz_tools/Shared/MSGraph/MSGraph.csproj @@ -1,4 +1,4 @@ - + Debug diff --git a/pwiz_tools/Shared/MSGraph/MSGraph.csproj.DotSettings b/pwiz_tools/Shared/MSGraph/MSGraph.csproj.DotSettings index 71a1e0fc85a..05276cc352c 100644 --- a/pwiz_tools/Shared/MSGraph/MSGraph.csproj.DotSettings +++ b/pwiz_tools/Shared/MSGraph/MSGraph.csproj.DotSettings @@ -1,3 +1,3 @@ - + Yes Pessimistic \ No newline at end of file diff --git a/pwiz_tools/Shared/MSGraph/MSGraphControl.cs b/pwiz_tools/Shared/MSGraph/MSGraphControl.cs index 2553f89aa6e..857a98805d4 100644 --- a/pwiz_tools/Shared/MSGraph/MSGraphControl.cs +++ b/pwiz_tools/Shared/MSGraph/MSGraphControl.cs @@ -1,4 +1,4 @@ -// +// // $Id: MSGraphControl.cs 1599 2009-12-04 01:35:39Z brendanx $ // // diff --git a/pwiz_tools/Shared/MSGraph/MSGraphPane.cs b/pwiz_tools/Shared/MSGraph/MSGraphPane.cs index b125ea84db5..4d8a204feeb 100644 --- a/pwiz_tools/Shared/MSGraph/MSGraphPane.cs +++ b/pwiz_tools/Shared/MSGraph/MSGraphPane.cs @@ -1,4 +1,4 @@ -// +// // $Id: MSGraphPane.cs 1599 2009-12-04 01:35:39Z brendanx $ // // diff --git a/pwiz_tools/Shared/MSGraph/Properties/AssemblyInfo.cs b/pwiz_tools/Shared/MSGraph/Properties/AssemblyInfo.cs index f19dcfe1e4d..ceaf3952d21 100644 --- a/pwiz_tools/Shared/MSGraph/Properties/AssemblyInfo.cs +++ b/pwiz_tools/Shared/MSGraph/Properties/AssemblyInfo.cs @@ -1,4 +1,4 @@ -using System.Reflection; +using System.Reflection; using System.Runtime.InteropServices; // General Information about an assembly is controlled through the following diff --git a/pwiz_tools/Shared/PanoramaClient/App.config b/pwiz_tools/Shared/PanoramaClient/App.config index 554634b40d5..be965e5029b 100644 --- a/pwiz_tools/Shared/PanoramaClient/App.config +++ b/pwiz_tools/Shared/PanoramaClient/App.config @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Shared/PanoramaClient/PanoramaClient.cs b/pwiz_tools/Shared/PanoramaClient/PanoramaClient.cs index 4700d6e700b..486f0d1682d 100644 --- a/pwiz_tools/Shared/PanoramaClient/PanoramaClient.cs +++ b/pwiz_tools/Shared/PanoramaClient/PanoramaClient.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections.Generic; using System.Collections.Specialized; using System.IO; diff --git a/pwiz_tools/Shared/PanoramaClient/PanoramaClient.csproj b/pwiz_tools/Shared/PanoramaClient/PanoramaClient.csproj index 7bf5416802a..810ee5f9faf 100644 --- a/pwiz_tools/Shared/PanoramaClient/PanoramaClient.csproj +++ b/pwiz_tools/Shared/PanoramaClient/PanoramaClient.csproj @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Shared/PanoramaClient/PanoramaDirectoryPicker.Designer.cs b/pwiz_tools/Shared/PanoramaClient/PanoramaDirectoryPicker.Designer.cs index d488b8b720a..8bbcbe0aee1 100644 --- a/pwiz_tools/Shared/PanoramaClient/PanoramaDirectoryPicker.Designer.cs +++ b/pwiz_tools/Shared/PanoramaClient/PanoramaDirectoryPicker.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.PanoramaClient +namespace pwiz.PanoramaClient { partial class PanoramaDirectoryPicker { diff --git a/pwiz_tools/Shared/PanoramaClient/PanoramaDirectoryPicker.cs b/pwiz_tools/Shared/PanoramaClient/PanoramaDirectoryPicker.cs index f4ca805f414..1dd17b0db5a 100644 --- a/pwiz_tools/Shared/PanoramaClient/PanoramaDirectoryPicker.cs +++ b/pwiz_tools/Shared/PanoramaClient/PanoramaDirectoryPicker.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Sophie Pallanck , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/PanoramaClient/PanoramaFilePicker.Designer.cs b/pwiz_tools/Shared/PanoramaClient/PanoramaFilePicker.Designer.cs index a53bae70a32..1e31a3b9c68 100644 --- a/pwiz_tools/Shared/PanoramaClient/PanoramaFilePicker.Designer.cs +++ b/pwiz_tools/Shared/PanoramaClient/PanoramaFilePicker.Designer.cs @@ -1,4 +1,4 @@ -using System.Windows.Forms; +using System.Windows.Forms; namespace pwiz.PanoramaClient { diff --git a/pwiz_tools/Shared/PanoramaClient/PanoramaFolderBrowser.Designer.cs b/pwiz_tools/Shared/PanoramaClient/PanoramaFolderBrowser.Designer.cs index 97227ca827a..c2784447f78 100644 --- a/pwiz_tools/Shared/PanoramaClient/PanoramaFolderBrowser.Designer.cs +++ b/pwiz_tools/Shared/PanoramaClient/PanoramaFolderBrowser.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.PanoramaClient +namespace pwiz.PanoramaClient { partial class PanoramaFolderBrowser { diff --git a/pwiz_tools/Shared/PanoramaClient/PanoramaFolderBrowser.cs b/pwiz_tools/Shared/PanoramaClient/PanoramaFolderBrowser.cs index 07ccfa74f57..c93e1ddf5c7 100644 --- a/pwiz_tools/Shared/PanoramaClient/PanoramaFolderBrowser.cs +++ b/pwiz_tools/Shared/PanoramaClient/PanoramaFolderBrowser.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Sophie Pallanck , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/PanoramaClient/PanoramaUtil.cs b/pwiz_tools/Shared/PanoramaClient/PanoramaUtil.cs index effcdb2c3a3..e6d515b3e42 100644 --- a/pwiz_tools/Shared/PanoramaClient/PanoramaUtil.cs +++ b/pwiz_tools/Shared/PanoramaClient/PanoramaUtil.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Shannon Joyner , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/PanoramaClient/Properties/AssemblyInfo.cs b/pwiz_tools/Shared/PanoramaClient/Properties/AssemblyInfo.cs index 336ac3f5217..4fc5a4b2381 100644 --- a/pwiz_tools/Shared/PanoramaClient/Properties/AssemblyInfo.cs +++ b/pwiz_tools/Shared/PanoramaClient/Properties/AssemblyInfo.cs @@ -1,4 +1,4 @@ -using System.Reflection; +using System.Reflection; using System.Runtime.InteropServices; // General Information about an assembly is controlled through the following diff --git a/pwiz_tools/Shared/PanoramaClient/Properties/Resources.Designer.cs b/pwiz_tools/Shared/PanoramaClient/Properties/Resources.Designer.cs index d542c0b654a..170843b231a 100644 --- a/pwiz_tools/Shared/PanoramaClient/Properties/Resources.Designer.cs +++ b/pwiz_tools/Shared/PanoramaClient/Properties/Resources.Designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Shared/PanoramaClient/Properties/Settings.Designer.cs b/pwiz_tools/Shared/PanoramaClient/Properties/Settings.Designer.cs index 819087b87da..89c3ac2fa86 100644 --- a/pwiz_tools/Shared/PanoramaClient/Properties/Settings.Designer.cs +++ b/pwiz_tools/Shared/PanoramaClient/Properties/Settings.Designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Shared/PanoramaClient/Properties/Settings.settings b/pwiz_tools/Shared/PanoramaClient/Properties/Settings.settings index 35ad060f82c..ac0bf36694e 100644 --- a/pwiz_tools/Shared/PanoramaClient/Properties/Settings.settings +++ b/pwiz_tools/Shared/PanoramaClient/Properties/Settings.settings @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Shared/PanoramaClient/RequestHelper.cs b/pwiz_tools/Shared/PanoramaClient/RequestHelper.cs index 9fdd34f4445..70790d2af2d 100644 --- a/pwiz_tools/Shared/PanoramaClient/RequestHelper.cs +++ b/pwiz_tools/Shared/PanoramaClient/RequestHelper.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections.Specialized; using System.Net; using System.Text; diff --git a/pwiz_tools/Shared/ProteomeDb/API/Digestion.cs b/pwiz_tools/Shared/ProteomeDb/API/Digestion.cs index ac6741f17af..4d9caa059b7 100644 --- a/pwiz_tools/Shared/ProteomeDb/API/Digestion.cs +++ b/pwiz_tools/Shared/ProteomeDb/API/Digestion.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/ProteomeDb/API/EntityModel.cs b/pwiz_tools/Shared/ProteomeDb/API/EntityModel.cs index 6c085f52657..01ee0d95095 100644 --- a/pwiz_tools/Shared/ProteomeDb/API/EntityModel.cs +++ b/pwiz_tools/Shared/ProteomeDb/API/EntityModel.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/ProteomeDb/API/Protein.cs b/pwiz_tools/Shared/ProteomeDb/API/Protein.cs index 1eb2b0ebc29..ba1c54e237b 100644 --- a/pwiz_tools/Shared/ProteomeDb/API/Protein.cs +++ b/pwiz_tools/Shared/ProteomeDb/API/Protein.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/ProteomeDb/API/ProteinMatcher.cs b/pwiz_tools/Shared/ProteomeDb/API/ProteinMatcher.cs index 8705e073f46..31ae305d4e3 100644 --- a/pwiz_tools/Shared/ProteomeDb/API/ProteinMatcher.cs +++ b/pwiz_tools/Shared/ProteomeDb/API/ProteinMatcher.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/ProteomeDb/API/ProteinMetadata.cs b/pwiz_tools/Shared/ProteomeDb/API/ProteinMetadata.cs index 01e06b36739..081191f9843 100644 --- a/pwiz_tools/Shared/ProteomeDb/API/ProteinMetadata.cs +++ b/pwiz_tools/Shared/ProteomeDb/API/ProteinMetadata.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/ProteomeDb/API/ProteomeDb.cs b/pwiz_tools/Shared/ProteomeDb/API/ProteomeDb.cs index 4310b6a6705..7ad4366e958 100644 --- a/pwiz_tools/Shared/ProteomeDb/API/ProteomeDb.cs +++ b/pwiz_tools/Shared/ProteomeDb/API/ProteomeDb.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/ProteomeDb/DataModel/DbEntity.cs b/pwiz_tools/Shared/ProteomeDb/DataModel/DbEntity.cs index 8e3bb9c3f51..0a4c79ebb9c 100644 --- a/pwiz_tools/Shared/ProteomeDb/DataModel/DbEntity.cs +++ b/pwiz_tools/Shared/ProteomeDb/DataModel/DbEntity.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/ProteomeDb/DataModel/DbProtein.cs b/pwiz_tools/Shared/ProteomeDb/DataModel/DbProtein.cs index 52f990900ec..3c59696970c 100644 --- a/pwiz_tools/Shared/ProteomeDb/DataModel/DbProtein.cs +++ b/pwiz_tools/Shared/ProteomeDb/DataModel/DbProtein.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/ProteomeDb/DataModel/DbProteinAnnotation.cs b/pwiz_tools/Shared/ProteomeDb/DataModel/DbProteinAnnotation.cs index ffc3ea334c8..aaa5d8876e9 100644 --- a/pwiz_tools/Shared/ProteomeDb/DataModel/DbProteinAnnotation.cs +++ b/pwiz_tools/Shared/ProteomeDb/DataModel/DbProteinAnnotation.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/ProteomeDb/DataModel/DbProteinName.cs b/pwiz_tools/Shared/ProteomeDb/DataModel/DbProteinName.cs index bff6bdeed4d..01a1c8f7f88 100644 --- a/pwiz_tools/Shared/ProteomeDb/DataModel/DbProteinName.cs +++ b/pwiz_tools/Shared/ProteomeDb/DataModel/DbProteinName.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/ProteomeDb/DataModel/DbSubsequence.cs b/pwiz_tools/Shared/ProteomeDb/DataModel/DbSubsequence.cs index 5a96b004be5..2e71ed0d103 100644 --- a/pwiz_tools/Shared/ProteomeDb/DataModel/DbSubsequence.cs +++ b/pwiz_tools/Shared/ProteomeDb/DataModel/DbSubsequence.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/ProteomeDb/DataModel/DbVersionInfo.cs b/pwiz_tools/Shared/ProteomeDb/DataModel/DbVersionInfo.cs index 808debb8fce..6510c7601ab 100644 --- a/pwiz_tools/Shared/ProteomeDb/DataModel/DbVersionInfo.cs +++ b/pwiz_tools/Shared/ProteomeDb/DataModel/DbVersionInfo.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/ProteomeDb/DataModel/mapping.xml b/pwiz_tools/Shared/ProteomeDb/DataModel/mapping.xml index dbc67d735d3..9824b840749 100644 --- a/pwiz_tools/Shared/ProteomeDb/DataModel/mapping.xml +++ b/pwiz_tools/Shared/ProteomeDb/DataModel/mapping.xml @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Shared/ProteomeDb/Fasta/IpiToUniprotMap.cs b/pwiz_tools/Shared/ProteomeDb/Fasta/IpiToUniprotMap.cs index f5463b548df..cbbfd7d6efd 100644 --- a/pwiz_tools/Shared/ProteomeDb/Fasta/IpiToUniprotMap.cs +++ b/pwiz_tools/Shared/ProteomeDb/Fasta/IpiToUniprotMap.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/ProteomeDb/Fasta/WebEnabledFastaImporter.cs b/pwiz_tools/Shared/ProteomeDb/Fasta/WebEnabledFastaImporter.cs index a7526e24e19..963b9adf546 100644 --- a/pwiz_tools/Shared/ProteomeDb/Fasta/WebEnabledFastaImporter.cs +++ b/pwiz_tools/Shared/ProteomeDb/Fasta/WebEnabledFastaImporter.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/ProteomeDb/Forms/ProteomeDbForm.Designer.cs b/pwiz_tools/Shared/ProteomeDb/Forms/ProteomeDbForm.Designer.cs index 3a82b4f9709..bcf2a20d1e1 100644 --- a/pwiz_tools/Shared/ProteomeDb/Forms/ProteomeDbForm.Designer.cs +++ b/pwiz_tools/Shared/ProteomeDb/Forms/ProteomeDbForm.Designer.cs @@ -1,4 +1,4 @@ -namespace ProteomeDb.Forms +namespace ProteomeDb.Forms { partial class ProteomeDbForm { diff --git a/pwiz_tools/Shared/ProteomeDb/Forms/ProteomeDbForm.cs b/pwiz_tools/Shared/ProteomeDb/Forms/ProteomeDbForm.cs index 9a388837a28..51f8b3b7072 100644 --- a/pwiz_tools/Shared/ProteomeDb/Forms/ProteomeDbForm.cs +++ b/pwiz_tools/Shared/ProteomeDb/Forms/ProteomeDbForm.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections.Generic; using System.ComponentModel; using System.Data; diff --git a/pwiz_tools/Shared/ProteomeDb/Properties/AssemblyInfo.cs b/pwiz_tools/Shared/ProteomeDb/Properties/AssemblyInfo.cs index d54fded9c0a..bd82052c5e6 100644 --- a/pwiz_tools/Shared/ProteomeDb/Properties/AssemblyInfo.cs +++ b/pwiz_tools/Shared/ProteomeDb/Properties/AssemblyInfo.cs @@ -1,4 +1,4 @@ -using System.Reflection; +using System.Reflection; using System.Runtime.InteropServices; // General Information about an assembly is controlled through the following diff --git a/pwiz_tools/Shared/ProteomeDb/Properties/Resources.Designer.cs b/pwiz_tools/Shared/ProteomeDb/Properties/Resources.Designer.cs index 1fd58ce6f67..537e59d3890 100644 --- a/pwiz_tools/Shared/ProteomeDb/Properties/Resources.Designer.cs +++ b/pwiz_tools/Shared/ProteomeDb/Properties/Resources.Designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Shared/ProteomeDb/ProteomeDb.csproj b/pwiz_tools/Shared/ProteomeDb/ProteomeDb.csproj index 2a51d9230c8..a7f35564c8a 100644 --- a/pwiz_tools/Shared/ProteomeDb/ProteomeDb.csproj +++ b/pwiz_tools/Shared/ProteomeDb/ProteomeDb.csproj @@ -1,4 +1,4 @@ - + Debug diff --git a/pwiz_tools/Shared/ProteomeDb/ProteomeDb.csproj.DotSettings b/pwiz_tools/Shared/ProteomeDb/ProteomeDb.csproj.DotSettings index 71a1e0fc85a..05276cc352c 100644 --- a/pwiz_tools/Shared/ProteomeDb/ProteomeDb.csproj.DotSettings +++ b/pwiz_tools/Shared/ProteomeDb/ProteomeDb.csproj.DotSettings @@ -1,3 +1,3 @@ - + Yes Pessimistic \ No newline at end of file diff --git a/pwiz_tools/Shared/ProteomeDb/Util/DatabaseResource.cs b/pwiz_tools/Shared/ProteomeDb/Util/DatabaseResource.cs index 9457160beb4..5b74eace2c4 100644 --- a/pwiz_tools/Shared/ProteomeDb/Util/DatabaseResource.cs +++ b/pwiz_tools/Shared/ProteomeDb/Util/DatabaseResource.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/ProteomeDb/Util/ProteomeDbPath.cs b/pwiz_tools/Shared/ProteomeDb/Util/ProteomeDbPath.cs index 1cd7bcfc146..0d614d15523 100644 --- a/pwiz_tools/Shared/ProteomeDb/Util/ProteomeDbPath.cs +++ b/pwiz_tools/Shared/ProteomeDb/Util/ProteomeDbPath.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/ProteowizardWrapper/Centroider.cs b/pwiz_tools/Shared/ProteowizardWrapper/Centroider.cs index 79ec21fa3d8..681f96b9e4f 100644 --- a/pwiz_tools/Shared/ProteowizardWrapper/Centroider.cs +++ b/pwiz_tools/Shared/ProteowizardWrapper/Centroider.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/ProteowizardWrapper/DiaUmpire.cs b/pwiz_tools/Shared/ProteowizardWrapper/DiaUmpire.cs index 066fc8fe60b..43ff41a0195 100644 --- a/pwiz_tools/Shared/ProteowizardWrapper/DiaUmpire.cs +++ b/pwiz_tools/Shared/ProteowizardWrapper/DiaUmpire.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2021 University of Washington - Seattle, WA diff --git a/pwiz_tools/Shared/ProteowizardWrapper/IterationListenerToMonitor.cs b/pwiz_tools/Shared/ProteowizardWrapper/IterationListenerToMonitor.cs index 3b8ada3ccde..969a6bb843e 100644 --- a/pwiz_tools/Shared/ProteowizardWrapper/IterationListenerToMonitor.cs +++ b/pwiz_tools/Shared/ProteowizardWrapper/IterationListenerToMonitor.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2021 University of Washington - Seattle, WA diff --git a/pwiz_tools/Shared/ProteowizardWrapper/LockMassParameters.cs b/pwiz_tools/Shared/ProteowizardWrapper/LockMassParameters.cs index e617de12aad..e549effb4c8 100644 --- a/pwiz_tools/Shared/ProteowizardWrapper/LockMassParameters.cs +++ b/pwiz_tools/Shared/ProteowizardWrapper/LockMassParameters.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2025 University of Washington - Seattle, WA diff --git a/pwiz_tools/Shared/ProteowizardWrapper/MsDataFileImpl.cs b/pwiz_tools/Shared/ProteowizardWrapper/MsDataFileImpl.cs index fe4fc6f0d00..d1ab8a7c446 100644 --- a/pwiz_tools/Shared/ProteowizardWrapper/MsDataFileImpl.cs +++ b/pwiz_tools/Shared/ProteowizardWrapper/MsDataFileImpl.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Shared/ProteowizardWrapper/MsDataFileInfo.cs b/pwiz_tools/Shared/ProteowizardWrapper/MsDataFileInfo.cs index 1157b96e38f..66491d4e264 100644 --- a/pwiz_tools/Shared/ProteowizardWrapper/MsDataFileInfo.cs +++ b/pwiz_tools/Shared/ProteowizardWrapper/MsDataFileInfo.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2021 University of Washington - Seattle, WA diff --git a/pwiz_tools/Shared/ProteowizardWrapper/Properties/AssemblyInfo.cs b/pwiz_tools/Shared/ProteowizardWrapper/Properties/AssemblyInfo.cs index f9da9629c5d..142528c03d1 100644 --- a/pwiz_tools/Shared/ProteowizardWrapper/Properties/AssemblyInfo.cs +++ b/pwiz_tools/Shared/ProteowizardWrapper/Properties/AssemblyInfo.cs @@ -1,4 +1,4 @@ -using System.Reflection; +using System.Reflection; using System.Runtime.InteropServices; // General Information about an assembly is controlled through the following diff --git a/pwiz_tools/Shared/ProteowizardWrapper/ProteowizardWrapper.csproj b/pwiz_tools/Shared/ProteowizardWrapper/ProteowizardWrapper.csproj index ee4aa881134..b4d33bf964f 100644 --- a/pwiz_tools/Shared/ProteowizardWrapper/ProteowizardWrapper.csproj +++ b/pwiz_tools/Shared/ProteowizardWrapper/ProteowizardWrapper.csproj @@ -1,4 +1,4 @@ - + Debug diff --git a/pwiz_tools/Shared/zedgraph/Properties/AssemblyInfo.cs b/pwiz_tools/Shared/zedgraph/Properties/AssemblyInfo.cs index 1d87d0e8192..15122b0e0e4 100644 --- a/pwiz_tools/Shared/zedgraph/Properties/AssemblyInfo.cs +++ b/pwiz_tools/Shared/zedgraph/Properties/AssemblyInfo.cs @@ -1,4 +1,4 @@ -using System.Reflection; +using System.Reflection; using System.Runtime.CompilerServices; using System.Runtime.InteropServices; using System.Security; diff --git a/pwiz_tools/Shared/zedgraph/ZedGraph.csproj b/pwiz_tools/Shared/zedgraph/ZedGraph.csproj index 56f8daa21ef..558b2d12256 100644 --- a/pwiz_tools/Shared/zedgraph/ZedGraph.csproj +++ b/pwiz_tools/Shared/zedgraph/ZedGraph.csproj @@ -1,4 +1,4 @@ - + Debug diff --git a/pwiz_tools/Shared/zedgraph/ZedGraph.csproj.user b/pwiz_tools/Shared/zedgraph/ZedGraph.csproj.user index ce4e607e606..a4a91882ac7 100644 --- a/pwiz_tools/Shared/zedgraph/ZedGraph.csproj.user +++ b/pwiz_tools/Shared/zedgraph/ZedGraph.csproj.user @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Shared/zedgraph/ZedGraph.sln b/pwiz_tools/Shared/zedgraph/ZedGraph.sln index c09244832e4..1120a15d3e0 100644 --- a/pwiz_tools/Shared/zedgraph/ZedGraph.sln +++ b/pwiz_tools/Shared/zedgraph/ZedGraph.sln @@ -1,4 +1,4 @@ - + Microsoft Visual Studio Solution File, Format Version 11.00 # Visual Studio 2010 Project("{FAE04EC0-301F-11D3-BF4B-00C04F79EFBC}") = "ZedGraph", "ZedGraph.csproj", "{B99650EE-AF46-47B4-A4A9-212ADE7809B7}" diff --git a/pwiz_tools/Shared/zedgraph/ZedGraph/BoxObj.cs b/pwiz_tools/Shared/zedgraph/ZedGraph/BoxObj.cs index d23cb022155..57d9ffb37e0 100644 --- a/pwiz_tools/Shared/zedgraph/ZedGraph/BoxObj.cs +++ b/pwiz_tools/Shared/zedgraph/ZedGraph/BoxObj.cs @@ -1,4 +1,4 @@ -//============================================================================ +//============================================================================ //ZedGraph Class Library - A Flexible Line Graph/Bar Graph Library in C# //Copyright © 2004 John Champion // diff --git a/pwiz_tools/Shared/zedgraph/ZedGraph/CollectionPlus.cs b/pwiz_tools/Shared/zedgraph/ZedGraph/CollectionPlus.cs index 8c7423ab7ac..465a57db9ea 100644 --- a/pwiz_tools/Shared/zedgraph/ZedGraph/CollectionPlus.cs +++ b/pwiz_tools/Shared/zedgraph/ZedGraph/CollectionPlus.cs @@ -1,4 +1,4 @@ -//============================================================================ +//============================================================================ //ZedGraph Class Library - A Flexible Line Graph/Bar Graph Library in C# //Copyright (C) 2004 John Champion // diff --git a/pwiz_tools/Shared/zedgraph/ZedGraph/EllipseObj.cs b/pwiz_tools/Shared/zedgraph/ZedGraph/EllipseObj.cs index 6664b997e1f..cd87c963b1b 100644 --- a/pwiz_tools/Shared/zedgraph/ZedGraph/EllipseObj.cs +++ b/pwiz_tools/Shared/zedgraph/ZedGraph/EllipseObj.cs @@ -1,4 +1,4 @@ -//============================================================================ +//============================================================================ //ZedGraph Class Library - A Flexible Line Graph/Bar Graph Library in C# //Copyright © 2004 John Champion // diff --git a/pwiz_tools/Shared/zedgraph/ZedGraph/ErrorBar.cs b/pwiz_tools/Shared/zedgraph/ZedGraph/ErrorBar.cs index 3358b022c4d..7a6ee270f96 100644 --- a/pwiz_tools/Shared/zedgraph/ZedGraph/ErrorBar.cs +++ b/pwiz_tools/Shared/zedgraph/ZedGraph/ErrorBar.cs @@ -1,4 +1,4 @@ -//============================================================================ +//============================================================================ //ZedGraph Class Library - A Flexible Line Graph/Bar Graph Library in C# //Copyright © 2004 John Champion // diff --git a/pwiz_tools/Shared/zedgraph/ZedGraph/ErrorBarItem.cs b/pwiz_tools/Shared/zedgraph/ZedGraph/ErrorBarItem.cs index 8511342adf7..0706882727b 100644 --- a/pwiz_tools/Shared/zedgraph/ZedGraph/ErrorBarItem.cs +++ b/pwiz_tools/Shared/zedgraph/ZedGraph/ErrorBarItem.cs @@ -1,4 +1,4 @@ -//============================================================================ +//============================================================================ //ZedGraph Class Library - A Flexible Line Graph/Bar Graph Library in C# //Copyright © 2004 John Champion // diff --git a/pwiz_tools/Shared/zedgraph/ZedGraph/HiLowBar.cs b/pwiz_tools/Shared/zedgraph/ZedGraph/HiLowBar.cs index ce6a28e21a6..07913f875f4 100644 --- a/pwiz_tools/Shared/zedgraph/ZedGraph/HiLowBar.cs +++ b/pwiz_tools/Shared/zedgraph/ZedGraph/HiLowBar.cs @@ -1,4 +1,4 @@ -//============================================================================ +//============================================================================ //ZedGraph Class Library - A Flexible Line Graph/Bar Graph Library in C# //Copyright © 2004 John Champion // diff --git a/pwiz_tools/Shared/zedgraph/ZedGraph/ImageObj.cs b/pwiz_tools/Shared/zedgraph/ZedGraph/ImageObj.cs index 84c5e2c7b26..d03b7b9d661 100644 --- a/pwiz_tools/Shared/zedgraph/ZedGraph/ImageObj.cs +++ b/pwiz_tools/Shared/zedgraph/ZedGraph/ImageObj.cs @@ -1,4 +1,4 @@ -//============================================================================ +//============================================================================ //ZedGraph Class Library - A Flexible Line Graph/Bar Graph Library in C# //Copyright © 2004 John Champion // diff --git a/pwiz_tools/Shared/zedgraph/ZedGraph/MasterPane.cs b/pwiz_tools/Shared/zedgraph/ZedGraph/MasterPane.cs index 7f68621cd09..c7d0250d620 100644 --- a/pwiz_tools/Shared/zedgraph/ZedGraph/MasterPane.cs +++ b/pwiz_tools/Shared/zedgraph/ZedGraph/MasterPane.cs @@ -1,4 +1,4 @@ -//============================================================================ +//============================================================================ //ZedGraph Class Library - A Flexible Line Graph/Bar Graph Library in C# //Copyright © 2004 John Champion // diff --git a/pwiz_tools/Shared/zedgraph/ZedGraph/PaneBase.cs b/pwiz_tools/Shared/zedgraph/ZedGraph/PaneBase.cs index 95b284afddb..5e9fa205e08 100644 --- a/pwiz_tools/Shared/zedgraph/ZedGraph/PaneBase.cs +++ b/pwiz_tools/Shared/zedgraph/ZedGraph/PaneBase.cs @@ -1,4 +1,4 @@ -//============================================================================ +//============================================================================ //ZedGraph Class Library - A Flexible Line Graph/Bar Graph Library in C# //Copyright © 2004 John Champion // diff --git a/pwiz_tools/Shared/zedgraph/ZedGraph/PaneList.cs b/pwiz_tools/Shared/zedgraph/ZedGraph/PaneList.cs index e89a15f14c2..7fd41baa596 100644 --- a/pwiz_tools/Shared/zedgraph/ZedGraph/PaneList.cs +++ b/pwiz_tools/Shared/zedgraph/ZedGraph/PaneList.cs @@ -1,4 +1,4 @@ -//============================================================================ +//============================================================================ //ZedGraph Class Library - A Flexible Line Graph/Bar Graph Library in C# //Copyright © 2004 John Champion // diff --git a/pwiz_tools/Shared/zedgraph/ZedGraph/ZoomState.cs b/pwiz_tools/Shared/zedgraph/ZedGraph/ZoomState.cs index 4f120a2e9cf..7eb23d7aabb 100644 --- a/pwiz_tools/Shared/zedgraph/ZedGraph/ZoomState.cs +++ b/pwiz_tools/Shared/zedgraph/ZedGraph/ZoomState.cs @@ -1,4 +1,4 @@ -//============================================================================ +//============================================================================ //ZedGraph Class Library - A Flexible Line Graph/Bar Graph Library in C# //Copyright © 2004 John Champion // diff --git a/pwiz_tools/Skyline/Alerts/AboutDlg.Designer.cs b/pwiz_tools/Skyline/Alerts/AboutDlg.Designer.cs index 47188859808..d96a119bbc1 100644 --- a/pwiz_tools/Skyline/Alerts/AboutDlg.Designer.cs +++ b/pwiz_tools/Skyline/Alerts/AboutDlg.Designer.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Drawing; namespace pwiz.Skyline.Alerts diff --git a/pwiz_tools/Skyline/Alerts/AboutDlg.cs b/pwiz_tools/Skyline/Alerts/AboutDlg.cs index 5a636e85b12..e6134b93899 100644 --- a/pwiz_tools/Skyline/Alerts/AboutDlg.cs +++ b/pwiz_tools/Skyline/Alerts/AboutDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Alerts/AlertDlg.cs b/pwiz_tools/Skyline/Alerts/AlertDlg.cs index 3f901d42a42..0f9fe80c2fc 100644 --- a/pwiz_tools/Skyline/Alerts/AlertDlg.cs +++ b/pwiz_tools/Skyline/Alerts/AlertDlg.cs @@ -1,4 +1,4 @@ -using pwiz.Common.GUI; +using pwiz.Common.GUI; using pwiz.Skyline.Util; using System; using System.ComponentModel; diff --git a/pwiz_tools/Skyline/Alerts/AlertLinkDlg.Designer.cs b/pwiz_tools/Skyline/Alerts/AlertLinkDlg.Designer.cs index 1985ea28b31..3eb5cea8885 100644 --- a/pwiz_tools/Skyline/Alerts/AlertLinkDlg.Designer.cs +++ b/pwiz_tools/Skyline/Alerts/AlertLinkDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Alerts +namespace pwiz.Skyline.Alerts { partial class AlertLinkDlg { diff --git a/pwiz_tools/Skyline/Alerts/AlertLinkDlg.cs b/pwiz_tools/Skyline/Alerts/AlertLinkDlg.cs index 8f4d1cbe2de..1383256f85b 100644 --- a/pwiz_tools/Skyline/Alerts/AlertLinkDlg.cs +++ b/pwiz_tools/Skyline/Alerts/AlertLinkDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Alerts/AlertsResources.designer.cs b/pwiz_tools/Skyline/Alerts/AlertsResources.designer.cs index 929e1c8dcd9..de3e8f2a606 100644 --- a/pwiz_tools/Skyline/Alerts/AlertsResources.designer.cs +++ b/pwiz_tools/Skyline/Alerts/AlertsResources.designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Alerts/ArdiaLoginDlg.Designer.cs b/pwiz_tools/Skyline/Alerts/ArdiaLoginDlg.Designer.cs index 4670f84a086..1c5ad03292b 100644 --- a/pwiz_tools/Skyline/Alerts/ArdiaLoginDlg.Designer.cs +++ b/pwiz_tools/Skyline/Alerts/ArdiaLoginDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Alerts +namespace pwiz.Skyline.Alerts { partial class ArdiaLoginDlg { diff --git a/pwiz_tools/Skyline/Alerts/ArdiaLoginDlg.cs b/pwiz_tools/Skyline/Alerts/ArdiaLoginDlg.cs index 4fd2aab5fa6..e54609889ce 100644 --- a/pwiz_tools/Skyline/Alerts/ArdiaLoginDlg.cs +++ b/pwiz_tools/Skyline/Alerts/ArdiaLoginDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2024 University of Washington - Seattle, WA diff --git a/pwiz_tools/Skyline/Alerts/ArdiaLogoutDlg.Designer.cs b/pwiz_tools/Skyline/Alerts/ArdiaLogoutDlg.Designer.cs index 2e07f6b0fe5..1c3f907fd25 100644 --- a/pwiz_tools/Skyline/Alerts/ArdiaLogoutDlg.Designer.cs +++ b/pwiz_tools/Skyline/Alerts/ArdiaLogoutDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Alerts +namespace pwiz.Skyline.Alerts { partial class ArdiaLogoutDlg { diff --git a/pwiz_tools/Skyline/Alerts/ArdiaLogoutDlg.cs b/pwiz_tools/Skyline/Alerts/ArdiaLogoutDlg.cs index ed7849a4c1b..8a965237794 100644 --- a/pwiz_tools/Skyline/Alerts/ArdiaLogoutDlg.cs +++ b/pwiz_tools/Skyline/Alerts/ArdiaLogoutDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2024 University of Washington - Seattle, WA diff --git a/pwiz_tools/Skyline/Alerts/DetailedReportErrorDlg.Designer.cs b/pwiz_tools/Skyline/Alerts/DetailedReportErrorDlg.Designer.cs index e0f5c0965ff..ac4cf6c7091 100644 --- a/pwiz_tools/Skyline/Alerts/DetailedReportErrorDlg.Designer.cs +++ b/pwiz_tools/Skyline/Alerts/DetailedReportErrorDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Alerts +namespace pwiz.Skyline.Alerts { partial class DetailedReportErrorDlg { diff --git a/pwiz_tools/Skyline/Alerts/DetailedReportErrorDlg.cs b/pwiz_tools/Skyline/Alerts/DetailedReportErrorDlg.cs index 0d67e4f8028..6f6ae90103d 100644 --- a/pwiz_tools/Skyline/Alerts/DetailedReportErrorDlg.cs +++ b/pwiz_tools/Skyline/Alerts/DetailedReportErrorDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Yuval Boss , * MacCoss Lab, Department of Genome Sciences, UW * @@ -270,7 +270,7 @@ public static byte[] GetDocumentBytesForErrorReport(SrmDocument document, int ma try { xmlSerializer.Serialize( - new StreamWriter(new MaxLengthStream(memoryStream, maxBytes), Encoding.UTF8), + new StreamWriter(new MaxLengthStream(memoryStream, maxBytes), new UTF8Encoding(false)), // UTF-8 without BOM document); } catch (Exception) diff --git a/pwiz_tools/Skyline/Alerts/EmptyProteinsDlg.Designer.cs b/pwiz_tools/Skyline/Alerts/EmptyProteinsDlg.Designer.cs index c0551b24bcd..0a8fdf34862 100644 --- a/pwiz_tools/Skyline/Alerts/EmptyProteinsDlg.Designer.cs +++ b/pwiz_tools/Skyline/Alerts/EmptyProteinsDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Alerts +namespace pwiz.Skyline.Alerts { partial class EmptyProteinsDlg { diff --git a/pwiz_tools/Skyline/Alerts/EmptyProteinsDlg.cs b/pwiz_tools/Skyline/Alerts/EmptyProteinsDlg.cs index 3c962e99a99..bdd1f7c5ef1 100644 --- a/pwiz_tools/Skyline/Alerts/EmptyProteinsDlg.cs +++ b/pwiz_tools/Skyline/Alerts/EmptyProteinsDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Alerts/FilterMatchedPeptidesDlg.cs b/pwiz_tools/Skyline/Alerts/FilterMatchedPeptidesDlg.cs index 67eeff1a316..9391f74a715 100644 --- a/pwiz_tools/Skyline/Alerts/FilterMatchedPeptidesDlg.cs +++ b/pwiz_tools/Skyline/Alerts/FilterMatchedPeptidesDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Alana Killeen , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Alerts/ImportDocResultsDlg.Designer.cs b/pwiz_tools/Skyline/Alerts/ImportDocResultsDlg.Designer.cs index 1fa401951d6..2ad1c246aa0 100644 --- a/pwiz_tools/Skyline/Alerts/ImportDocResultsDlg.Designer.cs +++ b/pwiz_tools/Skyline/Alerts/ImportDocResultsDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Alerts +namespace pwiz.Skyline.Alerts { partial class ImportDocResultsDlg { diff --git a/pwiz_tools/Skyline/Alerts/ImportDocResultsDlg.cs b/pwiz_tools/Skyline/Alerts/ImportDocResultsDlg.cs index 1f80927b79f..0da58a53e4b 100644 --- a/pwiz_tools/Skyline/Alerts/ImportDocResultsDlg.cs +++ b/pwiz_tools/Skyline/Alerts/ImportDocResultsDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Alerts/KeyValueGridDlg.cs b/pwiz_tools/Skyline/Alerts/KeyValueGridDlg.cs index 429a37ee3d5..e1c4c8b5ed8 100644 --- a/pwiz_tools/Skyline/Alerts/KeyValueGridDlg.cs +++ b/pwiz_tools/Skyline/Alerts/KeyValueGridDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2020 University of Washington - Seattle, WA diff --git a/pwiz_tools/Skyline/Alerts/LocateFileDlg.Designer.cs b/pwiz_tools/Skyline/Alerts/LocateFileDlg.Designer.cs index 9c3661b224b..f016d10af18 100644 --- a/pwiz_tools/Skyline/Alerts/LocateFileDlg.Designer.cs +++ b/pwiz_tools/Skyline/Alerts/LocateFileDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Alerts +namespace pwiz.Skyline.Alerts { partial class LocateFileDlg { diff --git a/pwiz_tools/Skyline/Alerts/LocateFileDlg.cs b/pwiz_tools/Skyline/Alerts/LocateFileDlg.cs index a6ae40074af..c590878de6f 100644 --- a/pwiz_tools/Skyline/Alerts/LocateFileDlg.cs +++ b/pwiz_tools/Skyline/Alerts/LocateFileDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Daniel Broudy , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Alerts/MessageDlg.cs b/pwiz_tools/Skyline/Alerts/MessageDlg.cs index 7b0dc0ef803..590c776a754 100644 --- a/pwiz_tools/Skyline/Alerts/MessageDlg.cs +++ b/pwiz_tools/Skyline/Alerts/MessageDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Alerts/MissingFileDlg.Designer.cs b/pwiz_tools/Skyline/Alerts/MissingFileDlg.Designer.cs index cafb390d1ee..3f2661c5bb6 100644 --- a/pwiz_tools/Skyline/Alerts/MissingFileDlg.Designer.cs +++ b/pwiz_tools/Skyline/Alerts/MissingFileDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Alerts +namespace pwiz.Skyline.Alerts { partial class MissingFileDlg { diff --git a/pwiz_tools/Skyline/Alerts/MissingFileDlg.cs b/pwiz_tools/Skyline/Alerts/MissingFileDlg.cs index 4c508f0262a..7c8623a7f0f 100644 --- a/pwiz_tools/Skyline/Alerts/MissingFileDlg.cs +++ b/pwiz_tools/Skyline/Alerts/MissingFileDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Alerts/MsFraggerDownloadDlg.Designer.cs b/pwiz_tools/Skyline/Alerts/MsFraggerDownloadDlg.Designer.cs index f476d51a5ae..318df785604 100644 --- a/pwiz_tools/Skyline/Alerts/MsFraggerDownloadDlg.Designer.cs +++ b/pwiz_tools/Skyline/Alerts/MsFraggerDownloadDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Alerts +namespace pwiz.Skyline.Alerts { partial class MsFraggerDownloadDlg { diff --git a/pwiz_tools/Skyline/Alerts/MsFraggerDownloadDlg.cs b/pwiz_tools/Skyline/Alerts/MsFraggerDownloadDlg.cs index d005e00de57..804996ed86c 100644 --- a/pwiz_tools/Skyline/Alerts/MsFraggerDownloadDlg.cs +++ b/pwiz_tools/Skyline/Alerts/MsFraggerDownloadDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2021 University of Washington - Seattle, WA diff --git a/pwiz_tools/Skyline/Alerts/MultiButtonMsgDlg.cs b/pwiz_tools/Skyline/Alerts/MultiButtonMsgDlg.cs index 82a9cdaa76a..65bdf6c401a 100644 --- a/pwiz_tools/Skyline/Alerts/MultiButtonMsgDlg.cs +++ b/pwiz_tools/Skyline/Alerts/MultiButtonMsgDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Alana Killeen , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Alerts/NoModeUIDlg.Designer.cs b/pwiz_tools/Skyline/Alerts/NoModeUIDlg.Designer.cs index 28b8adab6bb..c568173d88b 100644 --- a/pwiz_tools/Skyline/Alerts/NoModeUIDlg.Designer.cs +++ b/pwiz_tools/Skyline/Alerts/NoModeUIDlg.Designer.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt, * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Alerts/NoModeUIDlg.cs b/pwiz_tools/Skyline/Alerts/NoModeUIDlg.cs index ca723600a98..93e86447648 100644 --- a/pwiz_tools/Skyline/Alerts/NoModeUIDlg.cs +++ b/pwiz_tools/Skyline/Alerts/NoModeUIDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt, * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Alerts/PasteFilteredPeptidesDlg.Designer.cs b/pwiz_tools/Skyline/Alerts/PasteFilteredPeptidesDlg.Designer.cs index 98629596f22..b1597799f68 100644 --- a/pwiz_tools/Skyline/Alerts/PasteFilteredPeptidesDlg.Designer.cs +++ b/pwiz_tools/Skyline/Alerts/PasteFilteredPeptidesDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Alerts +namespace pwiz.Skyline.Alerts { partial class PasteFilteredPeptidesDlg { diff --git a/pwiz_tools/Skyline/Alerts/PasteFilteredPeptidesDlg.cs b/pwiz_tools/Skyline/Alerts/PasteFilteredPeptidesDlg.cs index cc9d92b6084..b989fdb86ac 100644 --- a/pwiz_tools/Skyline/Alerts/PasteFilteredPeptidesDlg.cs +++ b/pwiz_tools/Skyline/Alerts/PasteFilteredPeptidesDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Alerts/PasteTypeDlg.Designer.cs b/pwiz_tools/Skyline/Alerts/PasteTypeDlg.Designer.cs index ec1b4f53e0d..cd203617eb8 100644 --- a/pwiz_tools/Skyline/Alerts/PasteTypeDlg.Designer.cs +++ b/pwiz_tools/Skyline/Alerts/PasteTypeDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Alerts +namespace pwiz.Skyline.Alerts { partial class PasteTypeDlg { diff --git a/pwiz_tools/Skyline/Alerts/PasteTypeDlg.cs b/pwiz_tools/Skyline/Alerts/PasteTypeDlg.cs index b11dfc3f66e..38f4f9ca6e4 100644 --- a/pwiz_tools/Skyline/Alerts/PasteTypeDlg.cs +++ b/pwiz_tools/Skyline/Alerts/PasteTypeDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Alerts/PathChooserDlg.Designer.cs b/pwiz_tools/Skyline/Alerts/PathChooserDlg.Designer.cs index 4a46516b36a..fda3e901fcd 100644 --- a/pwiz_tools/Skyline/Alerts/PathChooserDlg.Designer.cs +++ b/pwiz_tools/Skyline/Alerts/PathChooserDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Alerts +namespace pwiz.Skyline.Alerts { partial class PathChooserDlg { diff --git a/pwiz_tools/Skyline/Alerts/PathChooserDlg.cs b/pwiz_tools/Skyline/Alerts/PathChooserDlg.cs index ae07eb66f46..3f821e739af 100644 --- a/pwiz_tools/Skyline/Alerts/PathChooserDlg.cs +++ b/pwiz_tools/Skyline/Alerts/PathChooserDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Yuval Boss , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Alerts/ReportErrorDlg.Designer.cs b/pwiz_tools/Skyline/Alerts/ReportErrorDlg.Designer.cs index 523a9210433..29164e23e66 100644 --- a/pwiz_tools/Skyline/Alerts/ReportErrorDlg.Designer.cs +++ b/pwiz_tools/Skyline/Alerts/ReportErrorDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Alerts +namespace pwiz.Skyline.Alerts { partial class ReportErrorDlg { diff --git a/pwiz_tools/Skyline/Alerts/ReportErrorDlg.cs b/pwiz_tools/Skyline/Alerts/ReportErrorDlg.cs index 1e6ea582c7e..cd009105e3f 100644 --- a/pwiz_tools/Skyline/Alerts/ReportErrorDlg.cs +++ b/pwiz_tools/Skyline/Alerts/ReportErrorDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Shannon Joyner , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Alerts/ReportShutdownDlg.cs b/pwiz_tools/Skyline/Alerts/ReportShutdownDlg.cs index 9a64e64920e..e7c08f6d67a 100644 --- a/pwiz_tools/Skyline/Alerts/ReportShutdownDlg.cs +++ b/pwiz_tools/Skyline/Alerts/ReportShutdownDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Alerts/ShareResultsFilesDlg.Designer.cs b/pwiz_tools/Skyline/Alerts/ShareResultsFilesDlg.Designer.cs index c5530b8bf86..518e86568b6 100644 --- a/pwiz_tools/Skyline/Alerts/ShareResultsFilesDlg.Designer.cs +++ b/pwiz_tools/Skyline/Alerts/ShareResultsFilesDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Alerts +namespace pwiz.Skyline.Alerts { partial class ShareResultsFilesDlg { diff --git a/pwiz_tools/Skyline/Alerts/ShareResultsFilesDlg.cs b/pwiz_tools/Skyline/Alerts/ShareResultsFilesDlg.cs index e0772f81576..5ba08180490 100644 --- a/pwiz_tools/Skyline/Alerts/ShareResultsFilesDlg.cs +++ b/pwiz_tools/Skyline/Alerts/ShareResultsFilesDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original authors: Clark Brace , * Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Alerts/SimpleFileDownloaderDlg.cs b/pwiz_tools/Skyline/Alerts/SimpleFileDownloaderDlg.cs index da88fc3cef1..beb95e3149f 100644 --- a/pwiz_tools/Skyline/Alerts/SimpleFileDownloaderDlg.cs +++ b/pwiz_tools/Skyline/Alerts/SimpleFileDownloaderDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2021 University of Washington - Seattle, WA diff --git a/pwiz_tools/Skyline/Alerts/SpectrumLibraryInfoDlg.Designer.cs b/pwiz_tools/Skyline/Alerts/SpectrumLibraryInfoDlg.Designer.cs index 828006326ea..a54cd9bbec9 100644 --- a/pwiz_tools/Skyline/Alerts/SpectrumLibraryInfoDlg.Designer.cs +++ b/pwiz_tools/Skyline/Alerts/SpectrumLibraryInfoDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Alerts +namespace pwiz.Skyline.Alerts { partial class SpectrumLibraryInfoDlg { diff --git a/pwiz_tools/Skyline/Alerts/SpectrumLibraryInfoDlg.cs b/pwiz_tools/Skyline/Alerts/SpectrumLibraryInfoDlg.cs index bb9ed02a712..148adf25ea9 100644 --- a/pwiz_tools/Skyline/Alerts/SpectrumLibraryInfoDlg.cs +++ b/pwiz_tools/Skyline/Alerts/SpectrumLibraryInfoDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Vagisha Sharma , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Alerts/UpgradeDlg.Designer.cs b/pwiz_tools/Skyline/Alerts/UpgradeDlg.Designer.cs index 1478b8dc883..40abf974767 100644 --- a/pwiz_tools/Skyline/Alerts/UpgradeDlg.Designer.cs +++ b/pwiz_tools/Skyline/Alerts/UpgradeDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Alerts +namespace pwiz.Skyline.Alerts { partial class UpgradeDlg { diff --git a/pwiz_tools/Skyline/Alerts/UpgradeDlg.cs b/pwiz_tools/Skyline/Alerts/UpgradeDlg.cs index 65baacc7e10..650089c1b75 100644 --- a/pwiz_tools/Skyline/Alerts/UpgradeDlg.cs +++ b/pwiz_tools/Skyline/Alerts/UpgradeDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Alerts/UpgradeLicenseDlg.cs b/pwiz_tools/Skyline/Alerts/UpgradeLicenseDlg.cs index 1526ebaad8a..e76da5676a6 100644 --- a/pwiz_tools/Skyline/Alerts/UpgradeLicenseDlg.cs +++ b/pwiz_tools/Skyline/Alerts/UpgradeLicenseDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Alerts/UpgradeLicenseDlg.designer.cs b/pwiz_tools/Skyline/Alerts/UpgradeLicenseDlg.designer.cs index 5f546e120e8..3613620e19d 100644 --- a/pwiz_tools/Skyline/Alerts/UpgradeLicenseDlg.designer.cs +++ b/pwiz_tools/Skyline/Alerts/UpgradeLicenseDlg.designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Alerts +namespace pwiz.Skyline.Alerts { partial class UpgradeLicenseDlg { diff --git a/pwiz_tools/Skyline/BullseyeSharp/BullseyeSharp.csproj b/pwiz_tools/Skyline/BullseyeSharp/BullseyeSharp.csproj index 09667e220f1..b425cbdf166 100644 --- a/pwiz_tools/Skyline/BullseyeSharp/BullseyeSharp.csproj +++ b/pwiz_tools/Skyline/BullseyeSharp/BullseyeSharp.csproj @@ -1,4 +1,4 @@ - + true diff --git a/pwiz_tools/Skyline/CommandArgUsage.Designer.cs b/pwiz_tools/Skyline/CommandArgUsage.Designer.cs index 5bef5c811ba..6eb12834ae2 100644 --- a/pwiz_tools/Skyline/CommandArgUsage.Designer.cs +++ b/pwiz_tools/Skyline/CommandArgUsage.Designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/CommandArgs.cs b/pwiz_tools/Skyline/CommandArgs.cs index 6fcce41c94c..5a928805b2d 100644 --- a/pwiz_tools/Skyline/CommandArgs.cs +++ b/pwiz_tools/Skyline/CommandArgs.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: John Chilton , * Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW diff --git a/pwiz_tools/Skyline/CommandLine.cs b/pwiz_tools/Skyline/CommandLine.cs index f080d60d967..541b146559a 100644 --- a/pwiz_tools/Skyline/CommandLine.cs +++ b/pwiz_tools/Skyline/CommandLine.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: John Chilton , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/CommandLineUI.cs b/pwiz_tools/Skyline/CommandLineUI.cs index b32bbe6c59d..a3c7d312f1c 100644 --- a/pwiz_tools/Skyline/CommandLineUI.cs +++ b/pwiz_tools/Skyline/CommandLineUI.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/CommonTest/CommonTest.csproj b/pwiz_tools/Skyline/CommonTest/CommonTest.csproj index 8a613d15c78..05a246cc6ef 100644 --- a/pwiz_tools/Skyline/CommonTest/CommonTest.csproj +++ b/pwiz_tools/Skyline/CommonTest/CommonTest.csproj @@ -1,4 +1,4 @@ - + Debug diff --git a/pwiz_tools/Skyline/CommonTest/DataBinding/FilterOperationTest.cs b/pwiz_tools/Skyline/CommonTest/DataBinding/FilterOperationTest.cs index 6c22b9160c7..703627951a3 100644 --- a/pwiz_tools/Skyline/CommonTest/DataBinding/FilterOperationTest.cs +++ b/pwiz_tools/Skyline/CommonTest/DataBinding/FilterOperationTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/CommonTest/DataBinding/FilterSpecTest.cs b/pwiz_tools/Skyline/CommonTest/DataBinding/FilterSpecTest.cs index 1cfb5b9915a..98f40de32d7 100644 --- a/pwiz_tools/Skyline/CommonTest/DataBinding/FilterSpecTest.cs +++ b/pwiz_tools/Skyline/CommonTest/DataBinding/FilterSpecTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/CommonTest/DataBinding/SampleData/TestViewContext.cs b/pwiz_tools/Skyline/CommonTest/DataBinding/SampleData/TestViewContext.cs index 11cd4f621b4..9daf8afb15e 100644 --- a/pwiz_tools/Skyline/CommonTest/DataBinding/SampleData/TestViewContext.cs +++ b/pwiz_tools/Skyline/CommonTest/DataBinding/SampleData/TestViewContext.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections.Generic; using System.IO; using System.Threading; diff --git a/pwiz_tools/Skyline/CommonTest/DataBinding/ViewLayoutListTest.cs b/pwiz_tools/Skyline/CommonTest/DataBinding/ViewLayoutListTest.cs index 130a17ce58f..6520b589ef8 100644 --- a/pwiz_tools/Skyline/CommonTest/DataBinding/ViewLayoutListTest.cs +++ b/pwiz_tools/Skyline/CommonTest/DataBinding/ViewLayoutListTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/CommonTest/FastaImporterTest.cs b/pwiz_tools/Skyline/CommonTest/FastaImporterTest.cs index 69f52949ba6..08cf1895c82 100644 --- a/pwiz_tools/Skyline/CommonTest/FastaImporterTest.cs +++ b/pwiz_tools/Skyline/CommonTest/FastaImporterTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/CommonTest/Properties/AssemblyInfo.cs b/pwiz_tools/Skyline/CommonTest/Properties/AssemblyInfo.cs index c0ed13f3553..f7576f62b51 100644 --- a/pwiz_tools/Skyline/CommonTest/Properties/AssemblyInfo.cs +++ b/pwiz_tools/Skyline/CommonTest/Properties/AssemblyInfo.cs @@ -1,4 +1,4 @@ -using System.Reflection; +using System.Reflection; using System.Runtime.InteropServices; // General Information about an assembly is controlled through the following diff --git a/pwiz_tools/Skyline/CommonTest/SqliteOperationsTest.cs b/pwiz_tools/Skyline/CommonTest/SqliteOperationsTest.cs index e4e0a50fb5b..c229d58fd8b 100644 --- a/pwiz_tools/Skyline/CommonTest/SqliteOperationsTest.cs +++ b/pwiz_tools/Skyline/CommonTest/SqliteOperationsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/CommonTest/ViewSpecTest.cs b/pwiz_tools/Skyline/CommonTest/ViewSpecTest.cs index 00f6f1b77ee..a8c11235102 100644 --- a/pwiz_tools/Skyline/CommonTest/ViewSpecTest.cs +++ b/pwiz_tools/Skyline/CommonTest/ViewSpecTest.cs @@ -1,4 +1,4 @@ -using System.IO; +using System.IO; using System.Xml.Serialization; using Microsoft.VisualStudio.TestTools.UnitTesting; using pwiz.Common.DataBinding; diff --git a/pwiz_tools/Skyline/Controls/AuditLog/AuditLogExtraInfoForm.Designer.cs b/pwiz_tools/Skyline/Controls/AuditLog/AuditLogExtraInfoForm.Designer.cs index f9ae910c7ba..53916a6bade 100644 --- a/pwiz_tools/Skyline/Controls/AuditLog/AuditLogExtraInfoForm.Designer.cs +++ b/pwiz_tools/Skyline/Controls/AuditLog/AuditLogExtraInfoForm.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Controls.AuditLog +namespace pwiz.Skyline.Controls.AuditLog { partial class AuditLogExtraInfoForm { diff --git a/pwiz_tools/Skyline/Controls/AuditLog/AuditLogExtraInfoForm.cs b/pwiz_tools/Skyline/Controls/AuditLog/AuditLogExtraInfoForm.cs index 7487b17cb25..87a5685f8c3 100644 --- a/pwiz_tools/Skyline/Controls/AuditLog/AuditLogExtraInfoForm.cs +++ b/pwiz_tools/Skyline/Controls/AuditLog/AuditLogExtraInfoForm.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tobias Rohde , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/AuditLog/AuditLogForm.Designer.cs b/pwiz_tools/Skyline/Controls/AuditLog/AuditLogForm.Designer.cs index b83810f6ae8..49c0ec89aeb 100644 --- a/pwiz_tools/Skyline/Controls/AuditLog/AuditLogForm.Designer.cs +++ b/pwiz_tools/Skyline/Controls/AuditLog/AuditLogForm.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Controls.AuditLog +namespace pwiz.Skyline.Controls.AuditLog { partial class AuditLogForm { diff --git a/pwiz_tools/Skyline/Controls/AuditLog/AuditLogForm.cs b/pwiz_tools/Skyline/Controls/AuditLog/AuditLogForm.cs index 150795c66f1..3b3a5db39a4 100644 --- a/pwiz_tools/Skyline/Controls/AuditLog/AuditLogForm.cs +++ b/pwiz_tools/Skyline/Controls/AuditLog/AuditLogForm.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tobias Rohde , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/Clustering/BoundGraphDataCalculator.cs b/pwiz_tools/Skyline/Controls/Clustering/BoundGraphDataCalculator.cs index 08fa8aa8ffc..ab343d3d101 100644 --- a/pwiz_tools/Skyline/Controls/Clustering/BoundGraphDataCalculator.cs +++ b/pwiz_tools/Skyline/Controls/Clustering/BoundGraphDataCalculator.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/Clustering/ClusterGraphResults.cs b/pwiz_tools/Skyline/Controls/Clustering/ClusterGraphResults.cs index 5c02325b8d1..10b4150e368 100644 --- a/pwiz_tools/Skyline/Controls/Clustering/ClusterGraphResults.cs +++ b/pwiz_tools/Skyline/Controls/Clustering/ClusterGraphResults.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/Clustering/ClusterInput.cs b/pwiz_tools/Skyline/Controls/Clustering/ClusterInput.cs index 3339c6a8a90..2e5c8ad7331 100644 --- a/pwiz_tools/Skyline/Controls/Clustering/ClusterInput.cs +++ b/pwiz_tools/Skyline/Controls/Clustering/ClusterInput.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/Clustering/ClusteredHeatMapItem.cs b/pwiz_tools/Skyline/Controls/Clustering/ClusteredHeatMapItem.cs index 05cac145120..110ed3e8df8 100644 --- a/pwiz_tools/Skyline/Controls/Clustering/ClusteredHeatMapItem.cs +++ b/pwiz_tools/Skyline/Controls/Clustering/ClusteredHeatMapItem.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections.Generic; using System.Drawing; using System.Linq; diff --git a/pwiz_tools/Skyline/Controls/Clustering/ClusteringResources.designer.cs b/pwiz_tools/Skyline/Controls/Clustering/ClusteringResources.designer.cs index c81a42418db..4133e971f0a 100644 --- a/pwiz_tools/Skyline/Controls/Clustering/ClusteringResources.designer.cs +++ b/pwiz_tools/Skyline/Controls/Clustering/ClusteringResources.designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Controls/Clustering/DataboundGraph.cs b/pwiz_tools/Skyline/Controls/Clustering/DataboundGraph.cs index 6c377d9269b..b1ebab6bf98 100644 --- a/pwiz_tools/Skyline/Controls/Clustering/DataboundGraph.cs +++ b/pwiz_tools/Skyline/Controls/Clustering/DataboundGraph.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/Clustering/DebugZedGraphControl.cs b/pwiz_tools/Skyline/Controls/Clustering/DebugZedGraphControl.cs index 5a69bd18df1..c92676d6efc 100644 --- a/pwiz_tools/Skyline/Controls/Clustering/DebugZedGraphControl.cs +++ b/pwiz_tools/Skyline/Controls/Clustering/DebugZedGraphControl.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/Clustering/HeatMapGraph.Designer.cs b/pwiz_tools/Skyline/Controls/Clustering/HeatMapGraph.Designer.cs index 029bea0dc63..f6815992a15 100644 --- a/pwiz_tools/Skyline/Controls/Clustering/HeatMapGraph.Designer.cs +++ b/pwiz_tools/Skyline/Controls/Clustering/HeatMapGraph.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Controls.Clustering +namespace pwiz.Skyline.Controls.Clustering { partial class HeatMapGraph { diff --git a/pwiz_tools/Skyline/Controls/Clustering/HeatMapGraph.cs b/pwiz_tools/Skyline/Controls/Clustering/HeatMapGraph.cs index b16b60ce9a9..d8fadcdc618 100644 --- a/pwiz_tools/Skyline/Controls/Clustering/HeatMapGraph.cs +++ b/pwiz_tools/Skyline/Controls/Clustering/HeatMapGraph.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Ali Marsh , * MacCoss Lab, Department of Genome Sciences, UW * Copyright 2020 University of Washington - Seattle, WA diff --git a/pwiz_tools/Skyline/Controls/Clustering/PcaPlot.Designer.cs b/pwiz_tools/Skyline/Controls/Clustering/PcaPlot.Designer.cs index 35b856f2510..304673494fb 100644 --- a/pwiz_tools/Skyline/Controls/Clustering/PcaPlot.Designer.cs +++ b/pwiz_tools/Skyline/Controls/Clustering/PcaPlot.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Controls.Clustering +namespace pwiz.Skyline.Controls.Clustering { partial class PcaPlot { diff --git a/pwiz_tools/Skyline/Controls/Clustering/PcaPlot.cs b/pwiz_tools/Skyline/Controls/Clustering/PcaPlot.cs index 10c1f5619dc..38cf2f9f4d5 100644 --- a/pwiz_tools/Skyline/Controls/Clustering/PcaPlot.cs +++ b/pwiz_tools/Skyline/Controls/Clustering/PcaPlot.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/Clustering/StripePainter.cs b/pwiz_tools/Skyline/Controls/Clustering/StripePainter.cs index 71a94781e6a..c75aaf9a6e5 100644 --- a/pwiz_tools/Skyline/Controls/Clustering/StripePainter.cs +++ b/pwiz_tools/Skyline/Controls/Clustering/StripePainter.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/ColumnChooser.Designer.cs b/pwiz_tools/Skyline/Controls/ColumnChooser.Designer.cs index f9d6baa184f..5d6b93d9a96 100644 --- a/pwiz_tools/Skyline/Controls/ColumnChooser.Designer.cs +++ b/pwiz_tools/Skyline/Controls/ColumnChooser.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Controls +namespace pwiz.Skyline.Controls { partial class ColumnChooser { diff --git a/pwiz_tools/Skyline/Controls/ColumnChooser.cs b/pwiz_tools/Skyline/Controls/ColumnChooser.cs index 02129f12a53..435edd51f7b 100644 --- a/pwiz_tools/Skyline/Controls/ColumnChooser.cs +++ b/pwiz_tools/Skyline/Controls/ColumnChooser.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/ControlUtil.cs b/pwiz_tools/Skyline/Controls/ControlUtil.cs index 497087de3b7..4016f8ef2ee 100644 --- a/pwiz_tools/Skyline/Controls/ControlUtil.cs +++ b/pwiz_tools/Skyline/Controls/ControlUtil.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/ControlsResources.designer.cs b/pwiz_tools/Skyline/Controls/ControlsResources.designer.cs index f80e2c4d631..810ec2f65bb 100644 --- a/pwiz_tools/Skyline/Controls/ControlsResources.designer.cs +++ b/pwiz_tools/Skyline/Controls/ControlsResources.designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Controls/CustomTip.cs b/pwiz_tools/Skyline/Controls/CustomTip.cs index e8cd00e37ec..e500d590e7f 100644 --- a/pwiz_tools/Skyline/Controls/CustomTip.cs +++ b/pwiz_tools/Skyline/Controls/CustomTip.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/DataGridViewEx.cs b/pwiz_tools/Skyline/Controls/DataGridViewEx.cs index b21a97175bf..bd7b86e46a3 100644 --- a/pwiz_tools/Skyline/Controls/DataGridViewEx.cs +++ b/pwiz_tools/Skyline/Controls/DataGridViewEx.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/Databinding/BoundDataGridViewEx.cs b/pwiz_tools/Skyline/Controls/Databinding/BoundDataGridViewEx.cs index 4873362b54b..cb58a63ffbe 100644 --- a/pwiz_tools/Skyline/Controls/Databinding/BoundDataGridViewEx.cs +++ b/pwiz_tools/Skyline/Controls/Databinding/BoundDataGridViewEx.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/Databinding/BuiltInReports.cs b/pwiz_tools/Skyline/Controls/Databinding/BuiltInReports.cs index e90ac7f74e0..6667a754234 100644 --- a/pwiz_tools/Skyline/Controls/Databinding/BuiltInReports.cs +++ b/pwiz_tools/Skyline/Controls/Databinding/BuiltInReports.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/Databinding/CandidatePeakForm.Designer.cs b/pwiz_tools/Skyline/Controls/Databinding/CandidatePeakForm.Designer.cs index 3e11271d20f..f3b83e26c03 100644 --- a/pwiz_tools/Skyline/Controls/Databinding/CandidatePeakForm.Designer.cs +++ b/pwiz_tools/Skyline/Controls/Databinding/CandidatePeakForm.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Controls.Databinding +namespace pwiz.Skyline.Controls.Databinding { partial class CandidatePeakForm { diff --git a/pwiz_tools/Skyline/Controls/Databinding/CandidatePeakForm.cs b/pwiz_tools/Skyline/Controls/Databinding/CandidatePeakForm.cs index b6e89c06dbe..7d1c640fd09 100644 --- a/pwiz_tools/Skyline/Controls/Databinding/CandidatePeakForm.cs +++ b/pwiz_tools/Skyline/Controls/Databinding/CandidatePeakForm.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/Databinding/ChooseFormatDlg.Designer.cs b/pwiz_tools/Skyline/Controls/Databinding/ChooseFormatDlg.Designer.cs index 48a4bca2774..daae7cc5f3b 100644 --- a/pwiz_tools/Skyline/Controls/Databinding/ChooseFormatDlg.Designer.cs +++ b/pwiz_tools/Skyline/Controls/Databinding/ChooseFormatDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Controls.Databinding +namespace pwiz.Skyline.Controls.Databinding { partial class ChooseFormatDlg { diff --git a/pwiz_tools/Skyline/Controls/Databinding/ChooseFormatDlg.cs b/pwiz_tools/Skyline/Controls/Databinding/ChooseFormatDlg.cs index 40b84894488..8c4c8255f2c 100644 --- a/pwiz_tools/Skyline/Controls/Databinding/ChooseFormatDlg.cs +++ b/pwiz_tools/Skyline/Controls/Databinding/ChooseFormatDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/Databinding/DataboundGridControl.cs b/pwiz_tools/Skyline/Controls/Databinding/DataboundGridControl.cs index 18220c391c3..da4e194bbec 100644 --- a/pwiz_tools/Skyline/Controls/Databinding/DataboundGridControl.cs +++ b/pwiz_tools/Skyline/Controls/Databinding/DataboundGridControl.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/Databinding/DataboundGridControl.designer.cs b/pwiz_tools/Skyline/Controls/Databinding/DataboundGridControl.designer.cs index 4ccaa8e27f3..aaaf9763dfc 100644 --- a/pwiz_tools/Skyline/Controls/Databinding/DataboundGridControl.designer.cs +++ b/pwiz_tools/Skyline/Controls/Databinding/DataboundGridControl.designer.cs @@ -1,4 +1,4 @@ -using System.Windows.Forms; +using System.Windows.Forms; using pwiz.Common.DataBinding; namespace pwiz.Skyline.Controls.Databinding diff --git a/pwiz_tools/Skyline/Controls/Databinding/DataboundGridForm.cs b/pwiz_tools/Skyline/Controls/Databinding/DataboundGridForm.cs index b74cdfdbc4f..913b484542b 100644 --- a/pwiz_tools/Skyline/Controls/Databinding/DataboundGridForm.cs +++ b/pwiz_tools/Skyline/Controls/Databinding/DataboundGridForm.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/Databinding/DataboundGridForm.designer.cs b/pwiz_tools/Skyline/Controls/Databinding/DataboundGridForm.designer.cs index 28446e3baa5..a89c3709632 100644 --- a/pwiz_tools/Skyline/Controls/Databinding/DataboundGridForm.designer.cs +++ b/pwiz_tools/Skyline/Controls/Databinding/DataboundGridForm.designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Controls.Databinding +namespace pwiz.Skyline.Controls.Databinding { partial class DataboundGridForm { diff --git a/pwiz_tools/Skyline/Controls/Databinding/DocumentGridForm.cs b/pwiz_tools/Skyline/Controls/Databinding/DocumentGridForm.cs index 8f98396c36b..5284e149287 100644 --- a/pwiz_tools/Skyline/Controls/Databinding/DocumentGridForm.cs +++ b/pwiz_tools/Skyline/Controls/Databinding/DocumentGridForm.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/Databinding/DocumentGridForm.designer.cs b/pwiz_tools/Skyline/Controls/Databinding/DocumentGridForm.designer.cs index a3b6f8ec246..1de95193385 100644 --- a/pwiz_tools/Skyline/Controls/Databinding/DocumentGridForm.designer.cs +++ b/pwiz_tools/Skyline/Controls/Databinding/DocumentGridForm.designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Controls.Databinding +namespace pwiz.Skyline.Controls.Databinding { partial class DocumentGridForm { diff --git a/pwiz_tools/Skyline/Controls/Databinding/DocumentGridViewContext.cs b/pwiz_tools/Skyline/Controls/Databinding/DocumentGridViewContext.cs index 44e29f4a087..eb49e1acb80 100644 --- a/pwiz_tools/Skyline/Controls/Databinding/DocumentGridViewContext.cs +++ b/pwiz_tools/Skyline/Controls/Databinding/DocumentGridViewContext.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/Databinding/ExportLiveReportDlg.Designer.cs b/pwiz_tools/Skyline/Controls/Databinding/ExportLiveReportDlg.Designer.cs index e8e20fe912c..fbfc6f21c4e 100644 --- a/pwiz_tools/Skyline/Controls/Databinding/ExportLiveReportDlg.Designer.cs +++ b/pwiz_tools/Skyline/Controls/Databinding/ExportLiveReportDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Controls.Databinding +namespace pwiz.Skyline.Controls.Databinding { partial class ExportLiveReportDlg { diff --git a/pwiz_tools/Skyline/Controls/Databinding/ExportLiveReportDlg.cs b/pwiz_tools/Skyline/Controls/Databinding/ExportLiveReportDlg.cs index bec21556331..77a93a32cf6 100644 --- a/pwiz_tools/Skyline/Controls/Databinding/ExportLiveReportDlg.cs +++ b/pwiz_tools/Skyline/Controls/Databinding/ExportLiveReportDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/Databinding/IDataboundGridForm.cs b/pwiz_tools/Skyline/Controls/Databinding/IDataboundGridForm.cs index 7da82417166..e2790a09862 100644 --- a/pwiz_tools/Skyline/Controls/Databinding/IDataboundGridForm.cs +++ b/pwiz_tools/Skyline/Controls/Databinding/IDataboundGridForm.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/Databinding/LiveResultsGrid.Designer.cs b/pwiz_tools/Skyline/Controls/Databinding/LiveResultsGrid.Designer.cs index 5c5fd46248b..903ff2049e2 100644 --- a/pwiz_tools/Skyline/Controls/Databinding/LiveResultsGrid.Designer.cs +++ b/pwiz_tools/Skyline/Controls/Databinding/LiveResultsGrid.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Controls.Databinding +namespace pwiz.Skyline.Controls.Databinding { partial class LiveResultsGrid { diff --git a/pwiz_tools/Skyline/Controls/Databinding/LiveResultsGrid.cs b/pwiz_tools/Skyline/Controls/Databinding/LiveResultsGrid.cs index 6749f83bcdf..87123d3bcfd 100644 --- a/pwiz_tools/Skyline/Controls/Databinding/LiveResultsGrid.cs +++ b/pwiz_tools/Skyline/Controls/Databinding/LiveResultsGrid.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/Databinding/PivotReplicateAndIsotopeLabelWidget.Designer.cs b/pwiz_tools/Skyline/Controls/Databinding/PivotReplicateAndIsotopeLabelWidget.Designer.cs index adae6bb200a..85b8bc0ea33 100644 --- a/pwiz_tools/Skyline/Controls/Databinding/PivotReplicateAndIsotopeLabelWidget.Designer.cs +++ b/pwiz_tools/Skyline/Controls/Databinding/PivotReplicateAndIsotopeLabelWidget.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Controls.Databinding +namespace pwiz.Skyline.Controls.Databinding { partial class PivotReplicateAndIsotopeLabelWidget { diff --git a/pwiz_tools/Skyline/Controls/Databinding/PivotReplicateAndIsotopeLabelWidget.cs b/pwiz_tools/Skyline/Controls/Databinding/PivotReplicateAndIsotopeLabelWidget.cs index 34e267af974..3b650999865 100644 --- a/pwiz_tools/Skyline/Controls/Databinding/PivotReplicateAndIsotopeLabelWidget.cs +++ b/pwiz_tools/Skyline/Controls/Databinding/PivotReplicateAndIsotopeLabelWidget.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/Databinding/ReplicatePivotColumns.cs b/pwiz_tools/Skyline/Controls/Databinding/ReplicatePivotColumns.cs index d718b956df8..12f0d635595 100644 --- a/pwiz_tools/Skyline/Controls/Databinding/ReplicatePivotColumns.cs +++ b/pwiz_tools/Skyline/Controls/Databinding/ReplicatePivotColumns.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections.Generic; using System.Linq; using pwiz.Common.DataBinding; diff --git a/pwiz_tools/Skyline/Controls/Databinding/RowActions/DeleteNodesAction.cs b/pwiz_tools/Skyline/Controls/Databinding/RowActions/DeleteNodesAction.cs index 3de4e7bd392..9e6b0d96d68 100644 --- a/pwiz_tools/Skyline/Controls/Databinding/RowActions/DeleteNodesAction.cs +++ b/pwiz_tools/Skyline/Controls/Databinding/RowActions/DeleteNodesAction.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/Databinding/RowActions/RemovePeaksAction.cs b/pwiz_tools/Skyline/Controls/Databinding/RowActions/RemovePeaksAction.cs index 5dcd1a2c136..d666de72022 100644 --- a/pwiz_tools/Skyline/Controls/Databinding/RowActions/RemovePeaksAction.cs +++ b/pwiz_tools/Skyline/Controls/Databinding/RowActions/RemovePeaksAction.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/Databinding/RowActions/RowAction.cs b/pwiz_tools/Skyline/Controls/Databinding/RowActions/RowAction.cs index f799b79d005..3bd2cbf96a5 100644 --- a/pwiz_tools/Skyline/Controls/Databinding/RowActions/RowAction.cs +++ b/pwiz_tools/Skyline/Controls/Databinding/RowActions/RowAction.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/Databinding/SkylineViewContext.cs b/pwiz_tools/Skyline/Controls/Databinding/SkylineViewContext.cs index 6ef6e11f246..b9a49b3335f 100644 --- a/pwiz_tools/Skyline/Controls/Databinding/SkylineViewContext.cs +++ b/pwiz_tools/Skyline/Controls/Databinding/SkylineViewContext.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/Databinding/SkylineWindowDataSchema.cs b/pwiz_tools/Skyline/Controls/Databinding/SkylineWindowDataSchema.cs index cee96fec5c7..1cd31093d5a 100644 --- a/pwiz_tools/Skyline/Controls/Databinding/SkylineWindowDataSchema.cs +++ b/pwiz_tools/Skyline/Controls/Databinding/SkylineWindowDataSchema.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/DocumentChangeLogEntryDlg.Designer.cs b/pwiz_tools/Skyline/Controls/DocumentChangeLogEntryDlg.Designer.cs index cc3768a2c51..069056784a6 100644 --- a/pwiz_tools/Skyline/Controls/DocumentChangeLogEntryDlg.Designer.cs +++ b/pwiz_tools/Skyline/Controls/DocumentChangeLogEntryDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Controls +namespace pwiz.Skyline.Controls { partial class DocumentChangeLogEntryDlg { diff --git a/pwiz_tools/Skyline/Controls/DocumentChangeLogEntryDlg.cs b/pwiz_tools/Skyline/Controls/DocumentChangeLogEntryDlg.cs index 45b664c04b9..a0a276d229e 100644 --- a/pwiz_tools/Skyline/Controls/DocumentChangeLogEntryDlg.cs +++ b/pwiz_tools/Skyline/Controls/DocumentChangeLogEntryDlg.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Windows.Forms; using pwiz.Skyline.Model; using pwiz.Skyline.Model.AuditLog; diff --git a/pwiz_tools/Skyline/Controls/FilesTree/BackgroundActionService.cs b/pwiz_tools/Skyline/Controls/FilesTree/BackgroundActionService.cs index a94fbee8680..9f6a0410e8e 100644 --- a/pwiz_tools/Skyline/Controls/FilesTree/BackgroundActionService.cs +++ b/pwiz_tools/Skyline/Controls/FilesTree/BackgroundActionService.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2025 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Skyline/Controls/FilesTree/FileSystemHealthMonitor.cs b/pwiz_tools/Skyline/Controls/FilesTree/FileSystemHealthMonitor.cs index 98f948ff949..71968040f0d 100644 --- a/pwiz_tools/Skyline/Controls/FilesTree/FileSystemHealthMonitor.cs +++ b/pwiz_tools/Skyline/Controls/FilesTree/FileSystemHealthMonitor.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2025 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Skyline/Controls/FilesTree/FileSystemService.cs b/pwiz_tools/Skyline/Controls/FilesTree/FileSystemService.cs index ab93864723b..27ac3d19753 100644 --- a/pwiz_tools/Skyline/Controls/FilesTree/FileSystemService.cs +++ b/pwiz_tools/Skyline/Controls/FilesTree/FileSystemService.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2025 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Skyline/Controls/FilesTree/FileSystemUtil.cs b/pwiz_tools/Skyline/Controls/FilesTree/FileSystemUtil.cs index afac79f0ab6..078a9529389 100644 --- a/pwiz_tools/Skyline/Controls/FilesTree/FileSystemUtil.cs +++ b/pwiz_tools/Skyline/Controls/FilesTree/FileSystemUtil.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2025 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Skyline/Controls/FilesTree/FilesTree.cs b/pwiz_tools/Skyline/Controls/FilesTree/FilesTree.cs index 3f88deea5c6..d4f984388e4 100644 --- a/pwiz_tools/Skyline/Controls/FilesTree/FilesTree.cs +++ b/pwiz_tools/Skyline/Controls/FilesTree/FilesTree.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2025 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); @@ -82,6 +82,8 @@ public FilesTree() ImageList.Images.Add(Resources.ViewFile); // 32bpp } + public FilesTreeNode SelectedNodeFTN => SelectedNode as FilesTreeNode; + [Browsable(false)] [DesignerSerializationVisibility(DesignerSerializationVisibility.Hidden)] public FilesTreeNode Root => (FilesTreeNode)Nodes[0]; @@ -120,6 +122,16 @@ public FilesTreeNode Folder() where T : FileModel } /// + /// Get the File associated with a model type, contained in a given folder. + /// + /// The model type + /// + /// + public FilesTreeNode File(FilesTreeNode folder) where T : FileModel + { + return folder.Nodes.Cast().FirstOrDefault(filesTreeNode => filesTreeNode.Model is T); + } + /// Selects a node without triggering the event . Used to re-select nodes after drag-and-drop. /// /// Node to select. diff --git a/pwiz_tools/Skyline/Controls/FilesTree/FilesTreeForm.Designer.cs b/pwiz_tools/Skyline/Controls/FilesTree/FilesTreeForm.Designer.cs index bd8475692d6..b5144d9e6b1 100644 --- a/pwiz_tools/Skyline/Controls/FilesTree/FilesTreeForm.Designer.cs +++ b/pwiz_tools/Skyline/Controls/FilesTree/FilesTreeForm.Designer.cs @@ -1,4 +1,4 @@ - + namespace pwiz.Skyline.Controls.FilesTree { public partial class FilesTreeForm @@ -78,6 +78,7 @@ private void InitializeComponent() this.openAuditLogMenuItem = new System.Windows.Forms.ToolStripMenuItem(); this.removeAllMenuItem = new System.Windows.Forms.ToolStripMenuItem(); this.removeMenuItem = new System.Windows.Forms.ToolStripMenuItem(); + this.openPropertiesViewMenuItem = new System.Windows.Forms.ToolStripMenuItem(); this.debugRefreshTreeMenuItem = new System.Windows.Forms.ToolStripMenuItem(); this.panel1.SuspendLayout(); this.filesTreeContextMenu.SuspendLayout(); @@ -111,7 +112,9 @@ private void InitializeComponent() this.openAuditLogMenuItem, this.removeAllMenuItem, this.removeMenuItem, + this.openPropertiesViewMenuItem, this.debugRefreshTreeMenuItem}); + this.filesTreeContextMenu.Name = "contextMenuStrip1"; resources.ApplyResources(this.filesTreeContextMenu, "filesTreeContextMenu"); // @@ -164,6 +167,12 @@ private void InitializeComponent() resources.ApplyResources(this.removeMenuItem, "removeMenuItem"); this.removeMenuItem.Click += new System.EventHandler(this.FilesTree_RemoveMenuItem); // + // removeMenuItem + // + this.openPropertiesViewMenuItem.Name = "openPropertiesViewMenuItem"; + resources.ApplyResources(this.openPropertiesViewMenuItem, "openPropertiesViewMenuItem"); + this.openPropertiesViewMenuItem.Click += new System.EventHandler(this.FilesTree_OpenPropertiesViewMenuItem); + // // debugRefreshTreeMenuItem // this.debugRefreshTreeMenuItem.Name = "debugRefreshTreeMenuItem"; @@ -199,6 +208,7 @@ private void InitializeComponent() private System.Windows.Forms.ToolStripMenuItem openAuditLogMenuItem; private System.Windows.Forms.ToolStripMenuItem removeAllMenuItem; private System.Windows.Forms.ToolStripMenuItem removeMenuItem; + private System.Windows.Forms.ToolStripMenuItem openPropertiesViewMenuItem; private System.Windows.Forms.ToolStripMenuItem debugRefreshTreeMenuItem; } } diff --git a/pwiz_tools/Skyline/Controls/FilesTree/FilesTreeForm.cs b/pwiz_tools/Skyline/Controls/FilesTree/FilesTreeForm.cs index d9a1ffd1f64..e71c5705981 100644 --- a/pwiz_tools/Skyline/Controls/FilesTree/FilesTreeForm.cs +++ b/pwiz_tools/Skyline/Controls/FilesTree/FilesTreeForm.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2025 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); @@ -23,6 +23,7 @@ using DigitalRune.Windows.Docking; using pwiz.Common.SystemUtil; using pwiz.Skyline.Alerts; +using pwiz.Skyline.Controls.Databinding; using pwiz.Skyline.Controls.SeqNode; using pwiz.Skyline.Model; using pwiz.Skyline.Model.DocSettings; @@ -32,6 +33,7 @@ using static pwiz.Skyline.Model.Files.FileModel; using Debugger = System.Diagnostics.Debugger; using Process = System.Diagnostics.Process; +using RootSkylineObject = pwiz.Skyline.Model.Databinding.Entities.RootSkylineObject; // CONSIDER: using IdentityPath (and DocNode.ReplaceChild) to simplify replicate name changes // But replicates do not have IdentityPath support because ChromatogramSet does not @@ -39,7 +41,7 @@ // ReSharper disable WrongIndentSize namespace pwiz.Skyline.Controls.FilesTree { - public partial class FilesTreeForm : DockableFormEx, ITipDisplayer + public partial class FilesTreeForm : DockableFormEx, ITipDisplayer, IPropertyProvider { private NodeTip _nodeTip; private Panel _dropTargetRemove; @@ -61,6 +63,7 @@ public FilesTreeForm(SkylineWindow skylineWindow) : this() filesTree.RestoredFromPersistentString = false; filesTree.NodeMouseDoubleClick += FilesTree_TreeNodeMouseDoubleClick; filesTree.MouseDown += FilesTree_MouseDown; + filesTree.AfterSelect += FilesTree_AfterSelect; filesTree.MouseMove += FilesTree_MouseMove; filesTree.MouseLeave += FilesTree_MouseLeave; filesTree.LostFocus += FilesTree_LostFocus; @@ -404,6 +407,17 @@ public Rectangle RectToScreen(Rectangle r) #endregion + #region IPropertyProvider implementation + + public RootSkylineObject GetPropertyObject() + { + var selectedNode = FilesTree.SelectedNodeFTN; + var dataSchema = new SkylineWindowDataSchema(SkylineWindow); + return selectedNode?.Model.PropertyObjectInstancer(dataSchema, selectedNode.LocalFilePath); + } + + #endregion + // TreeNode => Open Context Menu private void FilesTree_ContextMenuStrip_Opening(object sender, CancelEventArgs e) { @@ -492,6 +506,11 @@ private void FilesTree_TreeNodeMouseDoubleClick(object sender, TreeNodeMouseClic } } + private void FilesTree_AfterSelect(object sender, TreeViewEventArgs e) + { + SkylineWindow.PropertyProviderSelectionChanged(this); + } + private void FilesTree_BeforeCollapse(object sender, TreeViewCancelEventArgs e) { // CONSIDER: change FilesTree UI so the root node is a label and not @@ -545,6 +564,11 @@ private void FilesTree_RemoveMenuItem(object sender, EventArgs e) RemoveSelected(selection); } + private void FilesTree_OpenPropertiesViewMenuItem(object sender, EventArgs e) + { + SkylineWindow.ShowPropertyGridForm(true); + } + // FilesTree => initiate drag-and-drop, hide tooltips private void FilesTree_MouseMove(object sender, MouseEventArgs e) { diff --git a/pwiz_tools/Skyline/Controls/FilesTree/FilesTreeForm.resx b/pwiz_tools/Skyline/Controls/FilesTree/FilesTreeForm.resx index 45724e1a913..e3466cc1ba9 100644 --- a/pwiz_tools/Skyline/Controls/FilesTree/FilesTreeForm.resx +++ b/pwiz_tools/Skyline/Controls/FilesTree/FilesTreeForm.resx @@ -1,4 +1,4 @@ - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + text/microsoft-resx + + + 2.0 + + + System.Resources.ResXResourceReader, System.Windows.Forms, Version=4.0.0.0, Culture=neutral, PublicKeyToken=b77a5c561934e089 + + + System.Resources.ResXResourceWriter, System.Windows.Forms, Version=4.0.0.0, Culture=neutral, PublicKeyToken=b77a5c561934e089 + + + 17, 17 + + + + Fill + + + + 0, 0 + + + 784, 411 + + + + 0 + + + propertyGrid + + + System.Windows.Forms.PropertyGrid, System.Windows.Forms, Version=4.0.0.0, Culture=neutral, PublicKeyToken=b77a5c561934e089 + + + $this + + + 0 + + + True + + + 6, 13 + + + 784, 411 + + + + AAABAAEAEBAAAAEAIABoBAAAFgAAACgAAAAQAAAAIAAAAAEAIAAAAAAAAAQAAMMOAADDDgAAAAAAAAAA + AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA + AAAAAAAAAAAAACAgIF8gICCyICAgXwAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA + AAAAAAAAAAAAAD8/PwQgICC8HR0dNCAgIJ0gICBmAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA + AAAAAAAAAAAAAAAAAAAAAAAAICAgfyEhIYkdHR0jICAgnB8fH2kAAAAAAAAAAAAAAAAAAAAAAAAAAAAA + AAAAAAAAAAAAAAAAAAAAAAAAAAAAAD8/PwQhISGDICAgjB4eHiIhISGZHh4eawAAAAEAAAAAAAAAAAAA + AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAPz8/BB8fH4IiIiKNHh4eIiEhIZghISFzAAAAAQAA + AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACICAgfSIiIo0eHh4iISEhlyEh + IXMAAAABAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAIgICB9IiIijiAg + IB8hISGgISEh0yAgIPIgICDwICAgph4eHhkAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAVVVVAx8f + H4AhISGfICAg8iEhIf8hISH/ISEh/yEhIf8gICDpHx8fGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA + AABVVVUDISEh2iEhIf8hISH/ISEh/yAgINMgICD5ISEh/yEhIaIAAAAAAAAAAAAAAAAAAAAAAAAAAAAA + AAAAAAAAAAAAASAgIPghISH/ISEh/yAgINkkJCQOIiIiSiEhIfcgICDpAAAAAAAAAAAAAAAAAAAAAAAA + AAAAAAAAAAAAAAAAAAEgICD5ISEh/yAgINEkJCQOAAAAAAAAAAAhISFFICAg2QAAAAAAAAAAAAAAAAAA + AAAAAAAAAAAAAAAAAAAAAAAAISEhuCEhIf8hISH1Hx8fQQAAAAAAAAAAAAAAACMjIx0AAAAAAAAAAAAA + AAAAAAAAAAAAAAAAAAAAAAAAAAAAACAgIC8gICDzISEh/yEhIfQiIiI8AAAAAAAAAAAAAAAAAAAAAAAA + AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAISEhLiAgILUhISH0ICAg2x0dHRoAAAAAAAAAAAAA + AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA + AAAAAAAA//8AAI//AAAH/wAAg/8AAID/AADAfwAA4D8AAPADAAD4AQAA/AEAAPwBAAD8GQAA/h0AAP4P + AAD/BwAA//8AAA== + + + + Properties + + + Properties + + + ModeUIExtender + + + pwiz.Skyline.Util.Helpers+ModeUIExtender, Skyline-daily, Version=25.1.1.188, Culture=neutral, PublicKeyToken=null + + + PropertyGridForm + + + pwiz.Skyline.Util.DockableFormEx, Skyline-daily, Version=25.1.1.188, Culture=neutral, PublicKeyToken=null + + \ No newline at end of file diff --git a/pwiz_tools/Skyline/Controls/ResultsGridForm.cs b/pwiz_tools/Skyline/Controls/ResultsGridForm.cs index b43df7901d1..b3277234199 100644 --- a/pwiz_tools/Skyline/Controls/ResultsGridForm.cs +++ b/pwiz_tools/Skyline/Controls/ResultsGridForm.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/SeqNode/PeptideFormatter.cs b/pwiz_tools/Skyline/Controls/SeqNode/PeptideFormatter.cs index ad19196a0f1..4e0542d2e1b 100644 --- a/pwiz_tools/Skyline/Controls/SeqNode/PeptideFormatter.cs +++ b/pwiz_tools/Skyline/Controls/SeqNode/PeptideFormatter.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/SeqNode/PeptideGroupTreeNode.cs b/pwiz_tools/Skyline/Controls/SeqNode/PeptideGroupTreeNode.cs index 9ab9e4b9732..9f0b477ac68 100644 --- a/pwiz_tools/Skyline/Controls/SeqNode/PeptideGroupTreeNode.cs +++ b/pwiz_tools/Skyline/Controls/SeqNode/PeptideGroupTreeNode.cs @@ -1,9 +1,9 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * * Copyright 2009 University of Washington - Seattle, WA - * + * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at diff --git a/pwiz_tools/Skyline/Controls/SeqNode/PeptideTreeNode.cs b/pwiz_tools/Skyline/Controls/SeqNode/PeptideTreeNode.cs index 9ec2016d334..e30734d037f 100644 --- a/pwiz_tools/Skyline/Controls/SeqNode/PeptideTreeNode.cs +++ b/pwiz_tools/Skyline/Controls/SeqNode/PeptideTreeNode.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * @@ -26,6 +26,8 @@ using System.Windows.Forms; using pwiz.Common.SystemUtil; using pwiz.Skyline.Model; +using pwiz.Skyline.Model.Databinding; +using pwiz.Skyline.Model.Databinding.Entities; using pwiz.Skyline.Model.DocSettings; using pwiz.Skyline.Properties; using pwiz.Skyline.Util; @@ -57,6 +59,9 @@ public PeptideTreeNode(SequenceTree tree, PeptideDocNode nodePeptide) } + public override Func PropertyObjectInstancer => + dataSchema => new pwiz.Skyline.Model.Databinding.Entities.Peptide(dataSchema, Path); + public PeptideDocNode DocNode => (PeptideDocNode)Model; public PeptideGroupDocNode PepGroupNode => ((PeptideGroupTreeNode)Parent)?.DocNode; @@ -589,7 +594,7 @@ public static Size RenderTip(PeptideDocNode nodePep, var table = new TableDesc(); using (RenderTools rt = new RenderTools()) { - Peptide peptide = nodePep.Peptide; + var peptide = nodePep.Peptide; SizeF size; if (peptide.IsCustomMolecule) { diff --git a/pwiz_tools/Skyline/Controls/SeqNode/SrmTreeNode.cs b/pwiz_tools/Skyline/Controls/SeqNode/SrmTreeNode.cs index 850bf13a655..a708cc141ac 100644 --- a/pwiz_tools/Skyline/Controls/SeqNode/SrmTreeNode.cs +++ b/pwiz_tools/Skyline/Controls/SeqNode/SrmTreeNode.cs @@ -1,9 +1,9 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * * Copyright 2009 University of Washington - Seattle, WA - * + * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at @@ -19,13 +19,15 @@ using System; using System.Collections.Generic; using System.Drawing; +using System.Drawing.Imaging; using System.IO; using System.Linq; using System.Windows.Forms; -using System.Drawing.Imaging; using pwiz.Common.SystemUtil; using pwiz.Skyline.Alerts; using pwiz.Skyline.Model; +using pwiz.Skyline.Model.Databinding; +using pwiz.Skyline.Model.Databinding.Entities; using pwiz.Skyline.Model.DocSettings; using pwiz.Skyline.Model.GroupComparison; using pwiz.Skyline.Model.Results; @@ -89,6 +91,10 @@ public DocNode Model } } + // Provide a way to instantiate the PropertyObject for this model + public virtual Func PropertyObjectInstancer => + dataSchema => null; + public void UpdateState() { OnModelChanged(); diff --git a/pwiz_tools/Skyline/Controls/SeqNode/TransitionGroupTreeNode.cs b/pwiz_tools/Skyline/Controls/SeqNode/TransitionGroupTreeNode.cs index 9959ab51516..f36a431330d 100644 --- a/pwiz_tools/Skyline/Controls/SeqNode/TransitionGroupTreeNode.cs +++ b/pwiz_tools/Skyline/Controls/SeqNode/TransitionGroupTreeNode.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/SeqNode/TransitionTreeNode.cs b/pwiz_tools/Skyline/Controls/SeqNode/TransitionTreeNode.cs index fe11f382053..b3ee206c6bc 100644 --- a/pwiz_tools/Skyline/Controls/SeqNode/TransitionTreeNode.cs +++ b/pwiz_tools/Skyline/Controls/SeqNode/TransitionTreeNode.cs @@ -1,9 +1,9 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * * Copyright 2009 University of Washington - Seattle, WA - * + * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at @@ -21,6 +21,8 @@ using System.Drawing; using pwiz.Common.SystemUtil; using pwiz.Skyline.Model; +using pwiz.Skyline.Model.Databinding; +using pwiz.Skyline.Model.Databinding.Entities; using pwiz.Skyline.Model.GroupComparison; using pwiz.Skyline.Properties; using pwiz.Skyline.Util; @@ -50,6 +52,9 @@ public TransitionTreeNode(SequenceTree tree, TransitionDocNode ion) { } + public override Func PropertyObjectInstancer => + dataSchema => new pwiz.Skyline.Model.Databinding.Entities.Transition(dataSchema, Path); + public TransitionDocNode DocNode => (TransitionDocNode)Model; public TransitionGroupDocNode TransitionGroupNode => ((TransitionGroupTreeNode)Parent)?.DocNode; public PeptideDocNode PepNode => ((PeptideTreeNode)Parent?.Parent)?.DocNode; @@ -166,7 +171,7 @@ private static string GetResultsText(DisplaySettings displaySettings, Transition public static string GetLabel(TransitionDocNode nodeTran, string resultsText) { - Transition tran = nodeTran.Transition; + var tran = nodeTran.Transition; string labelPrefix; const string labelPrefixSpacer = " - "; if (nodeTran.ComplexFragmentIon.IsCrosslinked) @@ -175,7 +180,7 @@ public static string GetLabel(TransitionDocNode nodeTran, string resultsText) } else if (tran.IsPrecursor()) { - labelPrefix = nodeTran.FragmentIonName + Transition.GetMassIndexText(tran.MassIndex) + labelPrefixSpacer; + labelPrefix = nodeTran.FragmentIonName + Skyline.Model.Transition.GetMassIndexText(tran.MassIndex) + labelPrefixSpacer; } else if (tran.IsCustom()) { @@ -196,7 +201,7 @@ public static string GetLabel(TransitionDocNode nodeTran, string resultsText) return string.Format(@"{0}{1}{2}{3}", labelPrefix, GetMzLabel(nodeTran), - Transition.GetChargeIndicator(tran.Adduct), + Skyline.Model.Transition.GetChargeIndicator(tran.Adduct), resultsText); } @@ -207,7 +212,7 @@ public static string GetLabel(TransitionDocNode nodeTran, string resultsText) return string.Format(@"{0}{1}{2} ({3}){4}", labelPrefix, GetMzLabel(nodeTran), - Transition.GetChargeIndicator(tran.Adduct), + Skyline.Model.Transition.GetChargeIndicator(tran.Adduct), rank, resultsText); } @@ -217,7 +222,7 @@ private static string GetMzLabel(TransitionDocNode nodeTran) int? massShift = nodeTran.Transition.DecoyMassShift; double shift = SequenceMassCalc.GetPeptideInterval(massShift); return string.Format(@"{0:F04}{1}", nodeTran.Mz - shift, - Transition.GetDecoyText(massShift)); + Skyline.Model.Transition.GetDecoyText(massShift)); } #region Implementation of ITipProvider diff --git a/pwiz_tools/Skyline/Controls/SequenceTree.cs b/pwiz_tools/Skyline/Controls/SequenceTree.cs index 8690cef72c5..7284290cbca 100644 --- a/pwiz_tools/Skyline/Controls/SequenceTree.cs +++ b/pwiz_tools/Skyline/Controls/SequenceTree.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * @@ -231,6 +231,10 @@ public Rectangle TipRect [DesignerSerializationVisibility(DesignerSerializationVisibility.Hidden)] public ModFontHolder ModFonts { get; private set; } + [Browsable(false)] + [DesignerSerializationVisibility(DesignerSerializationVisibility.Hidden)] + public SrmTreeNode SelectedNodeSrmTreeNode => SelectedNode as SrmTreeNode; + /// /// For to use when child picking completes /// successfully, and the child set was changed. diff --git a/pwiz_tools/Skyline/Controls/SequenceTreeForm.Designer.cs b/pwiz_tools/Skyline/Controls/SequenceTreeForm.Designer.cs index 8230cd10fe4..0a4b070a195 100644 --- a/pwiz_tools/Skyline/Controls/SequenceTreeForm.Designer.cs +++ b/pwiz_tools/Skyline/Controls/SequenceTreeForm.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Controls +namespace pwiz.Skyline.Controls { partial class SequenceTreeForm { diff --git a/pwiz_tools/Skyline/Controls/SequenceTreeForm.cs b/pwiz_tools/Skyline/Controls/SequenceTreeForm.cs index 4351791cd0e..a4511c58b90 100644 --- a/pwiz_tools/Skyline/Controls/SequenceTreeForm.cs +++ b/pwiz_tools/Skyline/Controls/SequenceTreeForm.cs @@ -1,9 +1,9 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * * Copyright 2012 University of Washington - Seattle, WA - * + * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at @@ -21,26 +21,44 @@ using System.Collections.Generic; using System.ComponentModel; using System.Windows.Forms; +using pwiz.Skyline.Controls.Databinding; using pwiz.Skyline.Model; using pwiz.Skyline.Model.DocSettings; using pwiz.Skyline.Model.Proteome; +using pwiz.Skyline.Model.Databinding.Entities; using pwiz.Skyline.Util; namespace pwiz.Skyline.Controls { - public partial class SequenceTreeForm : DockableFormEx + public partial class SequenceTreeForm : DockableFormEx, IPropertyProvider { - public SequenceTreeForm(IDocumentUIContainer documentContainer, bool restoringState) + public SequenceTreeForm(SkylineWindow skylineWindow, bool restoringState) { + SkylineWindow = skylineWindow; InitializeComponent(); _defaultTabText = TabText; sequenceTree.LockDefaultExpansion = restoringState; - sequenceTree.InitializeTree(documentContainer); + sequenceTree.InitializeTree(skylineWindow); sequenceTree.LockDefaultExpansion = false; - if (documentContainer.DocumentUI != null) - UpdateResultsUI(documentContainer.DocumentUI.Settings, null); + if (skylineWindow.DocumentUI != null) + UpdateResultsUI(skylineWindow.DocumentUI.Settings, null); + sequenceTree.AfterSelect += SequenceTree_AfterSelect; + } + + [Browsable(false)] + [DesignerSerializationVisibility(DesignerSerializationVisibility.Hidden)] + private SkylineWindow SkylineWindow { get; } + + #region IPropertyProvider Implementation + + public RootSkylineObject GetPropertyObject() + { + var dataSchema = new SkylineWindowDataSchema(SkylineWindow); + return SequenceTree.SelectedNodeSrmTreeNode?.PropertyObjectInstancer(dataSchema); } + #endregion + protected override void OnClosing(CancelEventArgs e) { SequenceTree.HideEffects(); @@ -131,6 +149,11 @@ public void EndUpdateDoc() } } + private void SequenceTree_AfterSelect(object sender, TreeViewEventArgs e) + { + SkylineWindow.PropertyProviderSelectionChanged(this); + } + private void toolBarResults_Resize(object sender, EventArgs e) { EnsureResultsComboSize(); diff --git a/pwiz_tools/Skyline/Controls/Spectra/MatchingPrecursors.cs b/pwiz_tools/Skyline/Controls/Spectra/MatchingPrecursors.cs index e0a393cd7c1..4a42cf84c13 100644 --- a/pwiz_tools/Skyline/Controls/Spectra/MatchingPrecursors.cs +++ b/pwiz_tools/Skyline/Controls/Spectra/MatchingPrecursors.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections.Generic; using System.Linq; using pwiz.Common.Collections; diff --git a/pwiz_tools/Skyline/Controls/Spectra/PrecursorClass.cs b/pwiz_tools/Skyline/Controls/Spectra/PrecursorClass.cs index 8a3adde08b7..48f898f4724 100644 --- a/pwiz_tools/Skyline/Controls/Spectra/PrecursorClass.cs +++ b/pwiz_tools/Skyline/Controls/Spectra/PrecursorClass.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/Spectra/SpectrumClassRow.cs b/pwiz_tools/Skyline/Controls/Spectra/SpectrumClassRow.cs index 093e7f3d502..0df07f1a069 100644 --- a/pwiz_tools/Skyline/Controls/Spectra/SpectrumClassRow.cs +++ b/pwiz_tools/Skyline/Controls/Spectra/SpectrumClassRow.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/Spectra/SpectrumGridForm.Designer.cs b/pwiz_tools/Skyline/Controls/Spectra/SpectrumGridForm.Designer.cs index 5cff8611466..13a6c3b4760 100644 --- a/pwiz_tools/Skyline/Controls/Spectra/SpectrumGridForm.Designer.cs +++ b/pwiz_tools/Skyline/Controls/Spectra/SpectrumGridForm.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Controls.Spectra +namespace pwiz.Skyline.Controls.Spectra { partial class SpectrumGridForm { diff --git a/pwiz_tools/Skyline/Controls/Spectra/SpectrumGridForm.cs b/pwiz_tools/Skyline/Controls/Spectra/SpectrumGridForm.cs index 6f58f04961a..3350f56107f 100644 --- a/pwiz_tools/Skyline/Controls/Spectra/SpectrumGridForm.cs +++ b/pwiz_tools/Skyline/Controls/Spectra/SpectrumGridForm.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/Startup/ActionBoxControl.Designer.cs b/pwiz_tools/Skyline/Controls/Startup/ActionBoxControl.Designer.cs index 353ba9b71f5..eb4fb83df2e 100644 --- a/pwiz_tools/Skyline/Controls/Startup/ActionBoxControl.Designer.cs +++ b/pwiz_tools/Skyline/Controls/Startup/ActionBoxControl.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Controls.Startup +namespace pwiz.Skyline.Controls.Startup { partial class ActionBoxControl { diff --git a/pwiz_tools/Skyline/Controls/Startup/ActionBoxControl.cs b/pwiz_tools/Skyline/Controls/Startup/ActionBoxControl.cs index f58fba0ba12..2cc3470d2c4 100644 --- a/pwiz_tools/Skyline/Controls/Startup/ActionBoxControl.cs +++ b/pwiz_tools/Skyline/Controls/Startup/ActionBoxControl.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Yuval Boss , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/Startup/ActionTutorial.cs b/pwiz_tools/Skyline/Controls/Startup/ActionTutorial.cs index 10f47bd1c13..8b195560a48 100644 --- a/pwiz_tools/Skyline/Controls/Startup/ActionTutorial.cs +++ b/pwiz_tools/Skyline/Controls/Startup/ActionTutorial.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Yuval Boss , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/Startup/RecentFileControl.Designer.cs b/pwiz_tools/Skyline/Controls/Startup/RecentFileControl.Designer.cs index 56254746592..93a266f4ce8 100644 --- a/pwiz_tools/Skyline/Controls/Startup/RecentFileControl.Designer.cs +++ b/pwiz_tools/Skyline/Controls/Startup/RecentFileControl.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Controls.Startup +namespace pwiz.Skyline.Controls.Startup { partial class RecentFileControl { diff --git a/pwiz_tools/Skyline/Controls/Startup/RecentFileControl.cs b/pwiz_tools/Skyline/Controls/Startup/RecentFileControl.cs index cb377096d9d..12eb3cba3f5 100644 --- a/pwiz_tools/Skyline/Controls/Startup/RecentFileControl.cs +++ b/pwiz_tools/Skyline/Controls/Startup/RecentFileControl.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Yuval Boss , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/Startup/StartPage.cs b/pwiz_tools/Skyline/Controls/Startup/StartPage.cs index 8529a5a5aca..6fa6fb31e27 100644 --- a/pwiz_tools/Skyline/Controls/Startup/StartPage.cs +++ b/pwiz_tools/Skyline/Controls/Startup/StartPage.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Yuval Boss , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/Startup/TutorialImageResources.Designer.cs b/pwiz_tools/Skyline/Controls/Startup/TutorialImageResources.Designer.cs index b2d2b74b3b3..25d292b9a18 100644 --- a/pwiz_tools/Skyline/Controls/Startup/TutorialImageResources.Designer.cs +++ b/pwiz_tools/Skyline/Controls/Startup/TutorialImageResources.Designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Controls/Startup/TutorialLinkResources.Designer.cs b/pwiz_tools/Skyline/Controls/Startup/TutorialLinkResources.Designer.cs index a1c6f8d0d3f..43bcfa39b1a 100644 --- a/pwiz_tools/Skyline/Controls/Startup/TutorialLinkResources.Designer.cs +++ b/pwiz_tools/Skyline/Controls/Startup/TutorialLinkResources.Designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Controls/Startup/TutorialTextResources.Designer.cs b/pwiz_tools/Skyline/Controls/Startup/TutorialTextResources.Designer.cs index 02e71b7b635..8ed30353fdc 100644 --- a/pwiz_tools/Skyline/Controls/Startup/TutorialTextResources.Designer.cs +++ b/pwiz_tools/Skyline/Controls/Startup/TutorialTextResources.Designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Controls/StatementCompletionForm.Designer.cs b/pwiz_tools/Skyline/Controls/StatementCompletionForm.Designer.cs index 8337a070810..2773927a9d7 100644 --- a/pwiz_tools/Skyline/Controls/StatementCompletionForm.Designer.cs +++ b/pwiz_tools/Skyline/Controls/StatementCompletionForm.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Controls +namespace pwiz.Skyline.Controls { partial class StatementCompletionForm { diff --git a/pwiz_tools/Skyline/Controls/StatementCompletionForm.cs b/pwiz_tools/Skyline/Controls/StatementCompletionForm.cs index 7f338e391d4..29c24fad3a0 100644 --- a/pwiz_tools/Skyline/Controls/StatementCompletionForm.cs +++ b/pwiz_tools/Skyline/Controls/StatementCompletionForm.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/StatementCompletionTextBox.cs b/pwiz_tools/Skyline/Controls/StatementCompletionTextBox.cs index c726cacb4a4..d5009a4a4f2 100644 --- a/pwiz_tools/Skyline/Controls/StatementCompletionTextBox.cs +++ b/pwiz_tools/Skyline/Controls/StatementCompletionTextBox.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/TargetColumn.cs b/pwiz_tools/Skyline/Controls/TargetColumn.cs index f0d21596b6f..195e22476d8 100644 --- a/pwiz_tools/Skyline/Controls/TargetColumn.cs +++ b/pwiz_tools/Skyline/Controls/TargetColumn.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/ToolStripNumericUpDown.cs b/pwiz_tools/Skyline/Controls/ToolStripNumericUpDown.cs index 40780ede51c..1b4ce8c4442 100644 --- a/pwiz_tools/Skyline/Controls/ToolStripNumericUpDown.cs +++ b/pwiz_tools/Skyline/Controls/ToolStripNumericUpDown.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tobias Rohde , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/TreeViewMS.cs b/pwiz_tools/Skyline/Controls/TreeViewMS.cs index 40845c51912..e68f2f5afe9 100644 --- a/pwiz_tools/Skyline/Controls/TreeViewMS.cs +++ b/pwiz_tools/Skyline/Controls/TreeViewMS.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/TreeViewMSStateRestorer.cs b/pwiz_tools/Skyline/Controls/TreeViewMSStateRestorer.cs index 4fe27a790ca..ced7e0973b9 100644 --- a/pwiz_tools/Skyline/Controls/TreeViewMSStateRestorer.cs +++ b/pwiz_tools/Skyline/Controls/TreeViewMSStateRestorer.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Trevor Killeen , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/UndoRedoButtons.cs b/pwiz_tools/Skyline/Controls/UndoRedoButtons.cs index 59fd238149d..2a0dc0b8eff 100644 --- a/pwiz_tools/Skyline/Controls/UndoRedoButtons.cs +++ b/pwiz_tools/Skyline/Controls/UndoRedoButtons.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/UndoRedoList.Designer.cs b/pwiz_tools/Skyline/Controls/UndoRedoList.Designer.cs index 7aa4cea1da6..422660db798 100644 --- a/pwiz_tools/Skyline/Controls/UndoRedoList.Designer.cs +++ b/pwiz_tools/Skyline/Controls/UndoRedoList.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Controls +namespace pwiz.Skyline.Controls { partial class UndoRedoList { diff --git a/pwiz_tools/Skyline/Controls/UndoRedoList.cs b/pwiz_tools/Skyline/Controls/UndoRedoList.cs index 3cd6b401386..b0a3a88cf80 100644 --- a/pwiz_tools/Skyline/Controls/UndoRedoList.cs +++ b/pwiz_tools/Skyline/Controls/UndoRedoList.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Controls/WizardPages.cs b/pwiz_tools/Skyline/Controls/WizardPages.cs index 29b1069a5e1..a572e60a20f 100644 --- a/pwiz_tools/Skyline/Controls/WizardPages.cs +++ b/pwiz_tools/Skyline/Controls/WizardPages.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tahmina Jahan , * UWPR, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/EditUI/AddPeakCompareDlg.Designer.cs b/pwiz_tools/Skyline/EditUI/AddPeakCompareDlg.Designer.cs index 186e18e4541..b44b5508ab6 100644 --- a/pwiz_tools/Skyline/EditUI/AddPeakCompareDlg.Designer.cs +++ b/pwiz_tools/Skyline/EditUI/AddPeakCompareDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.EditUI +namespace pwiz.Skyline.EditUI { partial class AddPeakCompareDlg { diff --git a/pwiz_tools/Skyline/EditUI/AddPeakCompareDlg.cs b/pwiz_tools/Skyline/EditUI/AddPeakCompareDlg.cs index 387fb1dff9a..0ff40dfa92f 100644 --- a/pwiz_tools/Skyline/EditUI/AddPeakCompareDlg.cs +++ b/pwiz_tools/Skyline/EditUI/AddPeakCompareDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Dario Amodei , * Mallick Lab, Department of Radiology, Stanford University * diff --git a/pwiz_tools/Skyline/EditUI/AreaChartPropertyDlg.Designer.cs b/pwiz_tools/Skyline/EditUI/AreaChartPropertyDlg.Designer.cs index a82e92444d1..fa1f5fcccf3 100644 --- a/pwiz_tools/Skyline/EditUI/AreaChartPropertyDlg.Designer.cs +++ b/pwiz_tools/Skyline/EditUI/AreaChartPropertyDlg.Designer.cs @@ -1,4 +1,4 @@ -using System; +using System; namespace pwiz.Skyline.EditUI { diff --git a/pwiz_tools/Skyline/EditUI/AreaChartPropertyDlg.cs b/pwiz_tools/Skyline/EditUI/AreaChartPropertyDlg.cs index 8a80490f06c..4acb60b142a 100644 --- a/pwiz_tools/Skyline/EditUI/AreaChartPropertyDlg.cs +++ b/pwiz_tools/Skyline/EditUI/AreaChartPropertyDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/EditUI/ArrangeGraphsGroupedDlg.Designer.cs b/pwiz_tools/Skyline/EditUI/ArrangeGraphsGroupedDlg.Designer.cs index b22ea44f1e5..20660e6fafa 100644 --- a/pwiz_tools/Skyline/EditUI/ArrangeGraphsGroupedDlg.Designer.cs +++ b/pwiz_tools/Skyline/EditUI/ArrangeGraphsGroupedDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.EditUI +namespace pwiz.Skyline.EditUI { partial class ArrangeGraphsGroupedDlg { diff --git a/pwiz_tools/Skyline/EditUI/ArrangeGraphsGroupedDlg.cs b/pwiz_tools/Skyline/EditUI/ArrangeGraphsGroupedDlg.cs index bd6c250e17f..7151cc2d060 100644 --- a/pwiz_tools/Skyline/EditUI/ArrangeGraphsGroupedDlg.cs +++ b/pwiz_tools/Skyline/EditUI/ArrangeGraphsGroupedDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/EditUI/AssociateProteinsDlg.Designer.cs b/pwiz_tools/Skyline/EditUI/AssociateProteinsDlg.Designer.cs index eeceef92e96..8d70cdc63cc 100644 --- a/pwiz_tools/Skyline/EditUI/AssociateProteinsDlg.Designer.cs +++ b/pwiz_tools/Skyline/EditUI/AssociateProteinsDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.EditUI +namespace pwiz.Skyline.EditUI { partial class AssociateProteinsDlg { diff --git a/pwiz_tools/Skyline/EditUI/AssociateProteinsDlg.cs b/pwiz_tools/Skyline/EditUI/AssociateProteinsDlg.cs index 48c1a5ade24..a9347d414d6 100644 --- a/pwiz_tools/Skyline/EditUI/AssociateProteinsDlg.cs +++ b/pwiz_tools/Skyline/EditUI/AssociateProteinsDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Yuval Boss , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/EditUI/ChromChartPropertyDlg.Designer.cs b/pwiz_tools/Skyline/EditUI/ChromChartPropertyDlg.Designer.cs index 0866fb8ca1b..c075a324196 100644 --- a/pwiz_tools/Skyline/EditUI/ChromChartPropertyDlg.Designer.cs +++ b/pwiz_tools/Skyline/EditUI/ChromChartPropertyDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.EditUI +namespace pwiz.Skyline.EditUI { partial class ChromChartPropertyDlg { diff --git a/pwiz_tools/Skyline/EditUI/ChromChartPropertyDlg.cs b/pwiz_tools/Skyline/EditUI/ChromChartPropertyDlg.cs index 4a8bf4f5c84..8cc73f40603 100644 --- a/pwiz_tools/Skyline/EditUI/ChromChartPropertyDlg.cs +++ b/pwiz_tools/Skyline/EditUI/ChromChartPropertyDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/EditUI/ChromatogramRTThresholdDlg.Designer.cs b/pwiz_tools/Skyline/EditUI/ChromatogramRTThresholdDlg.Designer.cs index ed0ec54b156..e6fa7c1802e 100644 --- a/pwiz_tools/Skyline/EditUI/ChromatogramRTThresholdDlg.Designer.cs +++ b/pwiz_tools/Skyline/EditUI/ChromatogramRTThresholdDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.EditUI +namespace pwiz.Skyline.EditUI { partial class ChromatogramRTThresholdDlg { diff --git a/pwiz_tools/Skyline/EditUI/ChromatogramRTThresholdDlg.cs b/pwiz_tools/Skyline/EditUI/ChromatogramRTThresholdDlg.cs index f28c9c641f6..62938dfeba8 100644 --- a/pwiz_tools/Skyline/EditUI/ChromatogramRTThresholdDlg.cs +++ b/pwiz_tools/Skyline/EditUI/ChromatogramRTThresholdDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/EditUI/ComparePeakPickingDlg.Designer.cs b/pwiz_tools/Skyline/EditUI/ComparePeakPickingDlg.Designer.cs index d0c3a07c14d..ee67ac23a5e 100644 --- a/pwiz_tools/Skyline/EditUI/ComparePeakPickingDlg.Designer.cs +++ b/pwiz_tools/Skyline/EditUI/ComparePeakPickingDlg.Designer.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections.Generic; using System.ComponentModel; using System.Drawing; diff --git a/pwiz_tools/Skyline/EditUI/ComparePeakPickingDlg.cs b/pwiz_tools/Skyline/EditUI/ComparePeakPickingDlg.cs index c12d4b4bb6a..548a8b7939b 100644 --- a/pwiz_tools/Skyline/EditUI/ComparePeakPickingDlg.cs +++ b/pwiz_tools/Skyline/EditUI/ComparePeakPickingDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Dario Amodei , * Mallick Lab, Department of Radiology, Stanford University * diff --git a/pwiz_tools/Skyline/EditUI/CopyEmfToolStripMenuItem.cs b/pwiz_tools/Skyline/EditUI/CopyEmfToolStripMenuItem.cs index 0a21ad74b8b..927143e8b83 100644 --- a/pwiz_tools/Skyline/EditUI/CopyEmfToolStripMenuItem.cs +++ b/pwiz_tools/Skyline/EditUI/CopyEmfToolStripMenuItem.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/EditUI/CopyGraphDataToolStripMenuItem.cs b/pwiz_tools/Skyline/EditUI/CopyGraphDataToolStripMenuItem.cs index f834639b552..e036581e329 100644 --- a/pwiz_tools/Skyline/EditUI/CopyGraphDataToolStripMenuItem.cs +++ b/pwiz_tools/Skyline/EditUI/CopyGraphDataToolStripMenuItem.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/EditUI/EditLinkedPeptidesDlg.Designer.cs b/pwiz_tools/Skyline/EditUI/EditLinkedPeptidesDlg.Designer.cs index f62e4022af0..31d127f561e 100644 --- a/pwiz_tools/Skyline/EditUI/EditLinkedPeptidesDlg.Designer.cs +++ b/pwiz_tools/Skyline/EditUI/EditLinkedPeptidesDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.EditUI +namespace pwiz.Skyline.EditUI { partial class EditLinkedPeptidesDlg { diff --git a/pwiz_tools/Skyline/EditUI/EditLinkedPeptidesDlg.cs b/pwiz_tools/Skyline/EditUI/EditLinkedPeptidesDlg.cs index cbb09ec27c5..1a25ecef26c 100644 --- a/pwiz_tools/Skyline/EditUI/EditLinkedPeptidesDlg.cs +++ b/pwiz_tools/Skyline/EditUI/EditLinkedPeptidesDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/EditUI/EditNoteDlg.Designer.cs b/pwiz_tools/Skyline/EditUI/EditNoteDlg.Designer.cs index 05adef92da9..8af0f5c210e 100644 --- a/pwiz_tools/Skyline/EditUI/EditNoteDlg.Designer.cs +++ b/pwiz_tools/Skyline/EditUI/EditNoteDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.EditUI +namespace pwiz.Skyline.EditUI { partial class EditNoteDlg { diff --git a/pwiz_tools/Skyline/EditUI/EditNoteDlg.cs b/pwiz_tools/Skyline/EditUI/EditNoteDlg.cs index e15035873f6..43187ce54e5 100644 --- a/pwiz_tools/Skyline/EditUI/EditNoteDlg.cs +++ b/pwiz_tools/Skyline/EditUI/EditNoteDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/EditUI/EditPepModsDlg.Designer.cs b/pwiz_tools/Skyline/EditUI/EditPepModsDlg.Designer.cs index bf17cd2e440..f3683b4dc9d 100644 --- a/pwiz_tools/Skyline/EditUI/EditPepModsDlg.Designer.cs +++ b/pwiz_tools/Skyline/EditUI/EditPepModsDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.EditUI +namespace pwiz.Skyline.EditUI { partial class EditPepModsDlg { diff --git a/pwiz_tools/Skyline/EditUI/EditPepModsDlg.cs b/pwiz_tools/Skyline/EditUI/EditPepModsDlg.cs index 9951bc613c7..1980825da56 100644 --- a/pwiz_tools/Skyline/EditUI/EditPepModsDlg.cs +++ b/pwiz_tools/Skyline/EditUI/EditPepModsDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/EditUI/EditSpectrumFilterDlg.Designer.cs b/pwiz_tools/Skyline/EditUI/EditSpectrumFilterDlg.Designer.cs index 598c3ca6370..a0bd04a2782 100644 --- a/pwiz_tools/Skyline/EditUI/EditSpectrumFilterDlg.Designer.cs +++ b/pwiz_tools/Skyline/EditUI/EditSpectrumFilterDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.EditUI +namespace pwiz.Skyline.EditUI { partial class EditSpectrumFilterDlg { diff --git a/pwiz_tools/Skyline/EditUI/EditSpectrumFilterDlg.cs b/pwiz_tools/Skyline/EditUI/EditSpectrumFilterDlg.cs index baa42d4cf9d..1b5e57100bd 100644 --- a/pwiz_tools/Skyline/EditUI/EditSpectrumFilterDlg.cs +++ b/pwiz_tools/Skyline/EditUI/EditSpectrumFilterDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/EditUI/EditUIResources.designer.cs b/pwiz_tools/Skyline/EditUI/EditUIResources.designer.cs index df4ffe81f21..1bc1271f949 100644 --- a/pwiz_tools/Skyline/EditUI/EditUIResources.designer.cs +++ b/pwiz_tools/Skyline/EditUI/EditUIResources.designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/EditUI/FindNodeDlg.Designer.cs b/pwiz_tools/Skyline/EditUI/FindNodeDlg.Designer.cs index 24c6e959786..f37d9af4ce9 100644 --- a/pwiz_tools/Skyline/EditUI/FindNodeDlg.Designer.cs +++ b/pwiz_tools/Skyline/EditUI/FindNodeDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.EditUI +namespace pwiz.Skyline.EditUI { partial class FindNodeDlg { diff --git a/pwiz_tools/Skyline/EditUI/FindNodeDlg.cs b/pwiz_tools/Skyline/EditUI/FindNodeDlg.cs index 7dedb66ff6e..152fc7a06c9 100644 --- a/pwiz_tools/Skyline/EditUI/FindNodeDlg.cs +++ b/pwiz_tools/Skyline/EditUI/FindNodeDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/EditUI/GenerateDecoysDlg.Designer.cs b/pwiz_tools/Skyline/EditUI/GenerateDecoysDlg.Designer.cs index 20ab5560270..049505a7258 100644 --- a/pwiz_tools/Skyline/EditUI/GenerateDecoysDlg.Designer.cs +++ b/pwiz_tools/Skyline/EditUI/GenerateDecoysDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.EditUI +namespace pwiz.Skyline.EditUI { partial class GenerateDecoysDlg { diff --git a/pwiz_tools/Skyline/EditUI/GenerateDecoysDlg.cs b/pwiz_tools/Skyline/EditUI/GenerateDecoysDlg.cs index 58ab44e5410..ca5929adab1 100644 --- a/pwiz_tools/Skyline/EditUI/GenerateDecoysDlg.cs +++ b/pwiz_tools/Skyline/EditUI/GenerateDecoysDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Lucia Espona , * IMSB, ETHZ * diff --git a/pwiz_tools/Skyline/EditUI/MassErrorChartPropertyDlg.Designer.cs b/pwiz_tools/Skyline/EditUI/MassErrorChartPropertyDlg.Designer.cs index fbff60eb7c1..f71936b05a3 100644 --- a/pwiz_tools/Skyline/EditUI/MassErrorChartPropertyDlg.Designer.cs +++ b/pwiz_tools/Skyline/EditUI/MassErrorChartPropertyDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.EditUI +namespace pwiz.Skyline.EditUI { partial class MassErrorChartPropertyDlg { diff --git a/pwiz_tools/Skyline/EditUI/MassErrorChartPropertyDlg.cs b/pwiz_tools/Skyline/EditUI/MassErrorChartPropertyDlg.cs index d836a9c44a0..690ef1b62fd 100644 --- a/pwiz_tools/Skyline/EditUI/MassErrorChartPropertyDlg.cs +++ b/pwiz_tools/Skyline/EditUI/MassErrorChartPropertyDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Alex MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/EditUI/PasteDlg.Designer.cs b/pwiz_tools/Skyline/EditUI/PasteDlg.Designer.cs index dde35306f3e..82473763a69 100644 --- a/pwiz_tools/Skyline/EditUI/PasteDlg.Designer.cs +++ b/pwiz_tools/Skyline/EditUI/PasteDlg.Designer.cs @@ -1,4 +1,4 @@ -using pwiz.Skyline.Controls; +using pwiz.Skyline.Controls; namespace pwiz.Skyline.EditUI { diff --git a/pwiz_tools/Skyline/EditUI/PasteDlg.cs b/pwiz_tools/Skyline/EditUI/PasteDlg.cs index 706640cbe6d..2757735f1e4 100644 --- a/pwiz_tools/Skyline/EditUI/PasteDlg.cs +++ b/pwiz_tools/Skyline/EditUI/PasteDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/EditUI/PermuteIsotopeModificationsDlg.cs b/pwiz_tools/Skyline/EditUI/PermuteIsotopeModificationsDlg.cs index 2e2786332c4..0bab318c3a8 100644 --- a/pwiz_tools/Skyline/EditUI/PermuteIsotopeModificationsDlg.cs +++ b/pwiz_tools/Skyline/EditUI/PermuteIsotopeModificationsDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/EditUI/PermuteIsotopeModificationsDlg.designer.cs b/pwiz_tools/Skyline/EditUI/PermuteIsotopeModificationsDlg.designer.cs index 61b68b02a6a..1a762e1fd5b 100644 --- a/pwiz_tools/Skyline/EditUI/PermuteIsotopeModificationsDlg.designer.cs +++ b/pwiz_tools/Skyline/EditUI/PermuteIsotopeModificationsDlg.designer.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections.Generic; using System.Linq; using System.Text; diff --git a/pwiz_tools/Skyline/EditUI/RefineDlg.Designer.cs b/pwiz_tools/Skyline/EditUI/RefineDlg.Designer.cs index 9d9cee68228..d5f4e7a4b1e 100644 --- a/pwiz_tools/Skyline/EditUI/RefineDlg.Designer.cs +++ b/pwiz_tools/Skyline/EditUI/RefineDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.EditUI +namespace pwiz.Skyline.EditUI { partial class RefineDlg { diff --git a/pwiz_tools/Skyline/EditUI/RefineDlg.cs b/pwiz_tools/Skyline/EditUI/RefineDlg.cs index 32d57f0b592..dbe52a16611 100644 --- a/pwiz_tools/Skyline/EditUI/RefineDlg.cs +++ b/pwiz_tools/Skyline/EditUI/RefineDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/EditUI/RefineListDlg.Designer.cs b/pwiz_tools/Skyline/EditUI/RefineListDlg.Designer.cs index 77d60f788cc..e45e15e1896 100644 --- a/pwiz_tools/Skyline/EditUI/RefineListDlg.Designer.cs +++ b/pwiz_tools/Skyline/EditUI/RefineListDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.EditUI +namespace pwiz.Skyline.EditUI { partial class RefineListDlg { diff --git a/pwiz_tools/Skyline/EditUI/RefineListDlg.cs b/pwiz_tools/Skyline/EditUI/RefineListDlg.cs index d9b9d79253a..1b65f3ba0bb 100644 --- a/pwiz_tools/Skyline/EditUI/RefineListDlg.cs +++ b/pwiz_tools/Skyline/EditUI/RefineListDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/EditUI/RefineProteinListDlg.Designer.cs b/pwiz_tools/Skyline/EditUI/RefineProteinListDlg.Designer.cs index e249c7532e5..491d37d661c 100644 --- a/pwiz_tools/Skyline/EditUI/RefineProteinListDlg.Designer.cs +++ b/pwiz_tools/Skyline/EditUI/RefineProteinListDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.EditUI +namespace pwiz.Skyline.EditUI { partial class RefineProteinListDlg { diff --git a/pwiz_tools/Skyline/EditUI/RefineProteinListDlg.cs b/pwiz_tools/Skyline/EditUI/RefineProteinListDlg.cs index 6a5fbc95963..7145b1d8ff2 100644 --- a/pwiz_tools/Skyline/EditUI/RefineProteinListDlg.cs +++ b/pwiz_tools/Skyline/EditUI/RefineProteinListDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Alex MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/EditUI/RegressionRTThresholdDlg.Designer.cs b/pwiz_tools/Skyline/EditUI/RegressionRTThresholdDlg.Designer.cs index 21200fd64c6..fdd377d19c8 100644 --- a/pwiz_tools/Skyline/EditUI/RegressionRTThresholdDlg.Designer.cs +++ b/pwiz_tools/Skyline/EditUI/RegressionRTThresholdDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.EditUI +namespace pwiz.Skyline.EditUI { partial class RegressionRTThresholdDlg { diff --git a/pwiz_tools/Skyline/EditUI/RegressionRTThresholdDlg.cs b/pwiz_tools/Skyline/EditUI/RegressionRTThresholdDlg.cs index f712e4cb4e8..ec6217450cc 100644 --- a/pwiz_tools/Skyline/EditUI/RegressionRTThresholdDlg.cs +++ b/pwiz_tools/Skyline/EditUI/RegressionRTThresholdDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/EditUI/ReintegrateDlg.Designer.cs b/pwiz_tools/Skyline/EditUI/ReintegrateDlg.Designer.cs index 2d318e5ee41..3339bf98b5a 100644 --- a/pwiz_tools/Skyline/EditUI/ReintegrateDlg.Designer.cs +++ b/pwiz_tools/Skyline/EditUI/ReintegrateDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.EditUI +namespace pwiz.Skyline.EditUI { partial class ReintegrateDlg { diff --git a/pwiz_tools/Skyline/EditUI/ReintegrateDlg.cs b/pwiz_tools/Skyline/EditUI/ReintegrateDlg.cs index 0d91957c531..63090649bfa 100644 --- a/pwiz_tools/Skyline/EditUI/ReintegrateDlg.cs +++ b/pwiz_tools/Skyline/EditUI/ReintegrateDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Dario Amodei , * Mallick Lab, Department of Radiology, Stanford University * diff --git a/pwiz_tools/Skyline/EditUI/RenameProteinsDlg.Designer.cs b/pwiz_tools/Skyline/EditUI/RenameProteinsDlg.Designer.cs index 5cc44f5b0df..e43441c3ce0 100644 --- a/pwiz_tools/Skyline/EditUI/RenameProteinsDlg.Designer.cs +++ b/pwiz_tools/Skyline/EditUI/RenameProteinsDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.EditUI +namespace pwiz.Skyline.EditUI { partial class RenameProteinsDlg { diff --git a/pwiz_tools/Skyline/EditUI/RenameProteinsDlg.cs b/pwiz_tools/Skyline/EditUI/RenameProteinsDlg.cs index 59bed28b95b..e31a9a0baf6 100644 --- a/pwiz_tools/Skyline/EditUI/RenameProteinsDlg.cs +++ b/pwiz_tools/Skyline/EditUI/RenameProteinsDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Shannon Joyner , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/EditUI/SchedulingGraphPropertyDlg.Designer.cs b/pwiz_tools/Skyline/EditUI/SchedulingGraphPropertyDlg.Designer.cs index 7219cbd29b9..2e4d9e6095f 100644 --- a/pwiz_tools/Skyline/EditUI/SchedulingGraphPropertyDlg.Designer.cs +++ b/pwiz_tools/Skyline/EditUI/SchedulingGraphPropertyDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.EditUI +namespace pwiz.Skyline.EditUI { partial class SchedulingGraphPropertyDlg { diff --git a/pwiz_tools/Skyline/EditUI/SchedulingGraphPropertyDlg.cs b/pwiz_tools/Skyline/EditUI/SchedulingGraphPropertyDlg.cs index cf6d5a8b2eb..6a4ce04d6d9 100644 --- a/pwiz_tools/Skyline/EditUI/SchedulingGraphPropertyDlg.cs +++ b/pwiz_tools/Skyline/EditUI/SchedulingGraphPropertyDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/EditUI/SpectrumChartPropertyDlg.Designer.cs b/pwiz_tools/Skyline/EditUI/SpectrumChartPropertyDlg.Designer.cs index eea991c3385..eb53b538abb 100644 --- a/pwiz_tools/Skyline/EditUI/SpectrumChartPropertyDlg.Designer.cs +++ b/pwiz_tools/Skyline/EditUI/SpectrumChartPropertyDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.EditUI +namespace pwiz.Skyline.EditUI { partial class SpectrumChartPropertyDlg { diff --git a/pwiz_tools/Skyline/EditUI/SpectrumChartPropertyDlg.cs b/pwiz_tools/Skyline/EditUI/SpectrumChartPropertyDlg.cs index 38c75d8b5d1..e5398283d7b 100644 --- a/pwiz_tools/Skyline/EditUI/SpectrumChartPropertyDlg.cs +++ b/pwiz_tools/Skyline/EditUI/SpectrumChartPropertyDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/EditUI/SynchronizedIntegrationDlg.Designer.cs b/pwiz_tools/Skyline/EditUI/SynchronizedIntegrationDlg.Designer.cs index 3844d52f2dc..b5405512103 100644 --- a/pwiz_tools/Skyline/EditUI/SynchronizedIntegrationDlg.Designer.cs +++ b/pwiz_tools/Skyline/EditUI/SynchronizedIntegrationDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.EditUI +namespace pwiz.Skyline.EditUI { partial class SynchronizedIntegrationDlg { diff --git a/pwiz_tools/Skyline/EditUI/SynchronizedIntegrationDlg.cs b/pwiz_tools/Skyline/EditUI/SynchronizedIntegrationDlg.cs index 4426de8d83d..a5a584609ae 100644 --- a/pwiz_tools/Skyline/EditUI/SynchronizedIntegrationDlg.cs +++ b/pwiz_tools/Skyline/EditUI/SynchronizedIntegrationDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/EditUI/UniquePeptidesDlg.Designer.cs b/pwiz_tools/Skyline/EditUI/UniquePeptidesDlg.Designer.cs index 8f6b8872f5c..caf2622d976 100644 --- a/pwiz_tools/Skyline/EditUI/UniquePeptidesDlg.Designer.cs +++ b/pwiz_tools/Skyline/EditUI/UniquePeptidesDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.EditUI +namespace pwiz.Skyline.EditUI { partial class UniquePeptidesDlg { diff --git a/pwiz_tools/Skyline/EditUI/UniquePeptidesDlg.cs b/pwiz_tools/Skyline/EditUI/UniquePeptidesDlg.cs index 2543d5c0fde..008f37dc843 100644 --- a/pwiz_tools/Skyline/EditUI/UniquePeptidesDlg.cs +++ b/pwiz_tools/Skyline/EditUI/UniquePeptidesDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/EditUI/ZedGraphClipboard.cs b/pwiz_tools/Skyline/EditUI/ZedGraphClipboard.cs index 657176d013d..7e0c90cc175 100644 --- a/pwiz_tools/Skyline/EditUI/ZedGraphClipboard.cs +++ b/pwiz_tools/Skyline/EditUI/ZedGraphClipboard.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Executables/AssortResources/App.config b/pwiz_tools/Skyline/Executables/AssortResources/App.config index 56efbc7b5f1..20939707c81 100644 --- a/pwiz_tools/Skyline/Executables/AssortResources/App.config +++ b/pwiz_tools/Skyline/Executables/AssortResources/App.config @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Executables/AssortResources/AssortResources.csproj b/pwiz_tools/Skyline/Executables/AssortResources/AssortResources.csproj index 6711b1a3b95..3d3515c4a4d 100644 --- a/pwiz_tools/Skyline/Executables/AssortResources/AssortResources.csproj +++ b/pwiz_tools/Skyline/Executables/AssortResources/AssortResources.csproj @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Executables/AssortResources/AssortResources.sln b/pwiz_tools/Skyline/Executables/AssortResources/AssortResources.sln index 8f7c95f1e3f..b8018fa2dce 100644 --- a/pwiz_tools/Skyline/Executables/AssortResources/AssortResources.sln +++ b/pwiz_tools/Skyline/Executables/AssortResources/AssortResources.sln @@ -1,4 +1,4 @@ - + Microsoft Visual Studio Solution File, Format Version 12.00 # Visual Studio Version 17 VisualStudioVersion = 17.7.34024.191 diff --git a/pwiz_tools/Skyline/Executables/AssortResources/BlankResourcesFile.txt b/pwiz_tools/Skyline/Executables/AssortResources/BlankResourcesFile.txt index 2f96abecd49..267ed3e4393 100644 --- a/pwiz_tools/Skyline/Executables/AssortResources/BlankResourcesFile.txt +++ b/pwiz_tools/Skyline/Executables/AssortResources/BlankResourcesFile.txt @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/DataModel/Entity.cs b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/DataModel/Entity.cs index f05167b9155..61181441aab 100644 --- a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/DataModel/Entity.cs +++ b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/DataModel/Entity.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/DataModel/InvariantResource.cs b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/DataModel/InvariantResource.cs index c5d1e709bce..aa111364960 100644 --- a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/DataModel/InvariantResource.cs +++ b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/DataModel/InvariantResource.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/DataModel/LocalizedResource.cs b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/DataModel/LocalizedResource.cs index 16037f6c9bd..5d4b12b8bde 100644 --- a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/DataModel/LocalizedResource.cs +++ b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/DataModel/LocalizedResource.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/DataModel/ResourceLocation.cs b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/DataModel/ResourceLocation.cs index ee8202cef88..d91a5185565 100644 --- a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/DataModel/ResourceLocation.cs +++ b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/DataModel/ResourceLocation.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/DataModel/ResxFile.cs b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/DataModel/ResxFile.cs index 5f82d608483..85bebe6ac8a 100644 --- a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/DataModel/ResxFile.cs +++ b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/DataModel/ResxFile.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/DataModel/SessionFactoryFactory.cs b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/DataModel/SessionFactoryFactory.cs index fe8c5a40913..953630c0f15 100644 --- a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/DataModel/SessionFactoryFactory.cs +++ b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/DataModel/SessionFactoryFactory.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/FileSaver.cs b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/FileSaver.cs index 637f19c42e6..699bc730eda 100644 --- a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/FileSaver.cs +++ b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/FileSaver.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/Program.cs b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/Program.cs index 2a74455e78e..b060e881b28 100644 --- a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/Program.cs +++ b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/Program.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesModel/EnglishTextChanged.cs b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesModel/EnglishTextChanged.cs index 3909a9aff2b..1b70ba99fde 100644 --- a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesModel/EnglishTextChanged.cs +++ b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesModel/EnglishTextChanged.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesModel/InconsistentTranslation.cs b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesModel/InconsistentTranslation.cs index 86500fd94d5..4df408016b9 100644 --- a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesModel/InconsistentTranslation.cs +++ b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesModel/InconsistentTranslation.cs @@ -1,4 +1,4 @@ -using System.Collections.Immutable; +using System.Collections.Immutable; namespace ResourcesOrganizer.ResourcesModel { diff --git a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesModel/InvariantResourceKey.cs b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesModel/InvariantResourceKey.cs index b6799322a9b..ef4743c7f6e 100644 --- a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesModel/InvariantResourceKey.cs +++ b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesModel/InvariantResourceKey.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesModel/LocalizationCsvRecord.cs b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesModel/LocalizationCsvRecord.cs index d911868d4d6..932c4ce22dc 100644 --- a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesModel/LocalizationCsvRecord.cs +++ b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesModel/LocalizationCsvRecord.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesModel/LocalizationIssue.cs b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesModel/LocalizationIssue.cs index 295611d3d71..af5a707c95c 100644 --- a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesModel/LocalizationIssue.cs +++ b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesModel/LocalizationIssue.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesModel/LocalizedValue.cs b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesModel/LocalizedValue.cs index d9cfca68978..7183df64406 100644 --- a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesModel/LocalizedValue.cs +++ b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesModel/LocalizedValue.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesModel/ResourceEntry.cs b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesModel/ResourceEntry.cs index 9249a1c011a..69b30f25c26 100644 --- a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesModel/ResourceEntry.cs +++ b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesModel/ResourceEntry.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesModel/ResourcesDatabase.cs b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesModel/ResourcesDatabase.cs index e15ce61aa81..6697a4e188e 100644 --- a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesModel/ResourcesDatabase.cs +++ b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesModel/ResourcesDatabase.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesModel/ResourcesFile.cs b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesModel/ResourcesFile.cs index e859fa2637d..e17a0eb2945 100644 --- a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesModel/ResourcesFile.cs +++ b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesModel/ResourcesFile.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesOrganizer.csproj b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesOrganizer.csproj index 00f09ca1c93..59e6d097482 100644 --- a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesOrganizer.csproj +++ b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/ResourcesOrganizer.csproj @@ -1,4 +1,4 @@ - + Exe diff --git a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/TextUtil.cs b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/TextUtil.cs index 08ea45c0f12..4500c129f8c 100644 --- a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/TextUtil.cs +++ b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/TextUtil.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/Verbs.cs b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/Verbs.cs index 898db079386..00ba0de858d 100644 --- a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/Verbs.cs +++ b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/ResourcesOrganizer/Verbs.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/Test/AbstractUnitTest.cs b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/Test/AbstractUnitTest.cs index 23371bf5444..0adcc86df63 100644 --- a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/Test/AbstractUnitTest.cs +++ b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/Test/AbstractUnitTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/Test/App.config b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/Test/App.config index e79cdd07dba..422335b2c0c 100644 --- a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/Test/App.config +++ b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/Test/App.config @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/Test/BuildPeptideSearchLibraryControlTest.cs b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/Test/BuildPeptideSearchLibraryControlTest.cs index d837dcb9c93..258d9b1cee5 100644 --- a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/Test/BuildPeptideSearchLibraryControlTest.cs +++ b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/Test/BuildPeptideSearchLibraryControlTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/Test/ImportLocalizationCsvTest.cs b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/Test/ImportLocalizationCsvTest.cs index 2138ec5fa7e..b4cea879a35 100644 --- a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/Test/ImportLocalizationCsvTest.cs +++ b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/Test/ImportLocalizationCsvTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/Test/LocalizationIssueTypeTest.cs b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/Test/LocalizationIssueTypeTest.cs index 926851f03cb..34f932add75 100644 --- a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/Test/LocalizationIssueTypeTest.cs +++ b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/Test/LocalizationIssueTypeTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/Test/ResourcesFileTest.cs b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/Test/ResourcesFileTest.cs index 110e9887167..7005ab80149 100644 --- a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/Test/ResourcesFileTest.cs +++ b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/Test/ResourcesFileTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/Test/ResourcesFileTest/Skyline.resx.testfile b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/Test/ResourcesFileTest/Skyline.resx.testfile index ad37366aa4f..d2806e35b52 100644 --- a/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/Test/ResourcesFileTest/Skyline.resx.testfile +++ b/pwiz_tools/Skyline/Executables/DevTools/ResourcesOrganizer/Test/ResourcesFileTest/Skyline.resx.testfile @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Executables/Tools/ToolServiceTestHarness/Resources.Designer.cs b/pwiz_tools/Skyline/Executables/Tools/ToolServiceTestHarness/Resources.Designer.cs index 327af00fc42..68df87fb349 100644 --- a/pwiz_tools/Skyline/Executables/Tools/ToolServiceTestHarness/Resources.Designer.cs +++ b/pwiz_tools/Skyline/Executables/Tools/ToolServiceTestHarness/Resources.Designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Executables/Tools/ToolServiceTestHarness/ToolServiceTestHarness.csproj b/pwiz_tools/Skyline/Executables/Tools/ToolServiceTestHarness/ToolServiceTestHarness.csproj index 06f66e0b8d4..381186edbe8 100644 --- a/pwiz_tools/Skyline/Executables/Tools/ToolServiceTestHarness/ToolServiceTestHarness.csproj +++ b/pwiz_tools/Skyline/Executables/Tools/ToolServiceTestHarness/ToolServiceTestHarness.csproj @@ -1,4 +1,4 @@ - + WinExe diff --git a/pwiz_tools/Skyline/Executables/Tools/ToolServiceTestHarness/ToolServiceTestHarness.sln b/pwiz_tools/Skyline/Executables/Tools/ToolServiceTestHarness/ToolServiceTestHarness.sln index c319d0f4df8..b2744b20dde 100644 --- a/pwiz_tools/Skyline/Executables/Tools/ToolServiceTestHarness/ToolServiceTestHarness.sln +++ b/pwiz_tools/Skyline/Executables/Tools/ToolServiceTestHarness/ToolServiceTestHarness.sln @@ -1,4 +1,4 @@ - + Microsoft Visual Studio Solution File, Format Version 12.00 # Visual Studio Version 17 VisualStudioVersion = 17.5.33424.131 diff --git a/pwiz_tools/Skyline/Executables/Tools/ToolServiceTestHarness/ToolServiceTestHarnessForm.Designer.cs b/pwiz_tools/Skyline/Executables/Tools/ToolServiceTestHarness/ToolServiceTestHarnessForm.Designer.cs index e737891282e..64fc1beb211 100644 --- a/pwiz_tools/Skyline/Executables/Tools/ToolServiceTestHarness/ToolServiceTestHarnessForm.Designer.cs +++ b/pwiz_tools/Skyline/Executables/Tools/ToolServiceTestHarness/ToolServiceTestHarnessForm.Designer.cs @@ -1,4 +1,4 @@ -namespace ToolServiceTestHarness +namespace ToolServiceTestHarness { partial class ToolServiceTestHarnessForm { diff --git a/pwiz_tools/Skyline/Executables/Tools/Turnover/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector.sln b/pwiz_tools/Skyline/Executables/Tools/Turnover/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector.sln index 7a49f7c12ce..9478031b364 100644 --- a/pwiz_tools/Skyline/Executables/Tools/Turnover/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector.sln +++ b/pwiz_tools/Skyline/Executables/Tools/Turnover/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector.sln @@ -1,4 +1,4 @@ - + Microsoft Visual Studio Solution File, Format Version 12.00 # Visual Studio Version 17 VisualStudioVersion = 17.4.33122.133 diff --git a/pwiz_tools/Skyline/Executables/Tools/Turnover/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector/Properties/AssemblyInfo.cs b/pwiz_tools/Skyline/Executables/Tools/Turnover/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector/Properties/AssemblyInfo.cs index 4c962cb4b45..38c73a30073 100644 --- a/pwiz_tools/Skyline/Executables/Tools/Turnover/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector/Properties/AssemblyInfo.cs +++ b/pwiz_tools/Skyline/Executables/Tools/Turnover/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector/Properties/AssemblyInfo.cs @@ -1,4 +1,4 @@ -using System.Reflection; +using System.Reflection; using System.Runtime.CompilerServices; using System.Runtime.InteropServices; diff --git a/pwiz_tools/Skyline/Executables/Tools/Turnover/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector/Properties/Resources.Designer.cs b/pwiz_tools/Skyline/Executables/Tools/Turnover/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector/Properties/Resources.Designer.cs index c4380e7ffe1..916c3c58844 100644 --- a/pwiz_tools/Skyline/Executables/Tools/Turnover/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector/Properties/Resources.Designer.cs +++ b/pwiz_tools/Skyline/Executables/Tools/Turnover/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector/Properties/Resources.Designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Executables/Tools/Turnover/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector/Properties/Settings.Designer.cs b/pwiz_tools/Skyline/Executables/Tools/Turnover/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector/Properties/Settings.Designer.cs index c40db267eaf..67ce683b822 100644 --- a/pwiz_tools/Skyline/Executables/Tools/Turnover/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector/Properties/Settings.Designer.cs +++ b/pwiz_tools/Skyline/Executables/Tools/Turnover/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector/Properties/Settings.Designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Executables/Tools/Turnover/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector/Properties/Settings.settings b/pwiz_tools/Skyline/Executables/Tools/Turnover/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector/Properties/Settings.settings index abf36c5d3d7..4ed82c03dff 100644 --- a/pwiz_tools/Skyline/Executables/Tools/Turnover/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector/Properties/Settings.settings +++ b/pwiz_tools/Skyline/Executables/Tools/Turnover/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector/Properties/Settings.settings @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Executables/Tools/Turnover/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector.csproj b/pwiz_tools/Skyline/Executables/Tools/Turnover/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector.csproj index 865c70194ed..b72e94a788c 100644 --- a/pwiz_tools/Skyline/Executables/Tools/Turnover/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector.csproj +++ b/pwiz_tools/Skyline/Executables/Tools/Turnover/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector.csproj @@ -1,4 +1,4 @@ - + Debug diff --git a/pwiz_tools/Skyline/Executables/Tools/Turnover/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector/ProteinTurnoverUI.Designer.cs b/pwiz_tools/Skyline/Executables/Tools/Turnover/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector/ProteinTurnoverUI.Designer.cs index a554a113ab0..5a460a8ea42 100644 --- a/pwiz_tools/Skyline/Executables/Tools/Turnover/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector/ProteinTurnoverUI.Designer.cs +++ b/pwiz_tools/Skyline/Executables/Tools/Turnover/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector/ProteinTurnoverUI.Designer.cs @@ -1,4 +1,4 @@ -namespace ProteinTurnoverArgCollector +namespace ProteinTurnoverArgCollector { partial class ProteinTurnoverUI { diff --git a/pwiz_tools/Skyline/Executables/Tools/Turnover/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector/ProteinTurnoverUI.cs b/pwiz_tools/Skyline/Executables/Tools/Turnover/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector/ProteinTurnoverUI.cs index 904862b61d0..ffecaf48af4 100644 --- a/pwiz_tools/Skyline/Executables/Tools/Turnover/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector/ProteinTurnoverUI.cs +++ b/pwiz_tools/Skyline/Executables/Tools/Turnover/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector/ProteinTurnoverUI.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections.Generic; using System.IO; using System.Linq; diff --git a/pwiz_tools/Skyline/Executables/Tools/Turnover/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector/ProteinTurnoverUtil.cs b/pwiz_tools/Skyline/Executables/Tools/Turnover/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector/ProteinTurnoverUtil.cs index b492177d9a4..03f44b5deae 100644 --- a/pwiz_tools/Skyline/Executables/Tools/Turnover/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector/ProteinTurnoverUtil.cs +++ b/pwiz_tools/Skyline/Executables/Tools/Turnover/ProteinTurnoverArgCollector/ProteinTurnoverArgCollector/ProteinTurnoverUtil.cs @@ -1,4 +1,4 @@ -namespace ProteinTurnoverArgCollector +namespace ProteinTurnoverArgCollector { class ProteinTurnoverUtil { diff --git a/pwiz_tools/Skyline/Executables/Tools/Turnover/tool-inf/ProteinTurnover_annotations.sky b/pwiz_tools/Skyline/Executables/Tools/Turnover/tool-inf/ProteinTurnover_annotations.sky index 5ab0f5d997f..9299d0c85ac 100644 --- a/pwiz_tools/Skyline/Executables/Tools/Turnover/tool-inf/ProteinTurnover_annotations.sky +++ b/pwiz_tools/Skyline/Executables/Tools/Turnover/tool-inf/ProteinTurnover_annotations.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Executables/Tools/XLTCalc/c#/SkylineIntegration.sln b/pwiz_tools/Skyline/Executables/Tools/XLTCalc/c#/SkylineIntegration.sln index 57cdc443806..fb5e1e4eeb7 100644 --- a/pwiz_tools/Skyline/Executables/Tools/XLTCalc/c#/SkylineIntegration.sln +++ b/pwiz_tools/Skyline/Executables/Tools/XLTCalc/c#/SkylineIntegration.sln @@ -1,4 +1,4 @@ - + Microsoft Visual Studio Solution File, Format Version 12.00 # Visual Studio 15 VisualStudioVersion = 15.0.27703.2026 diff --git a/pwiz_tools/Skyline/Executables/Tools/XLTCalc/c#/SkylineIntegration/Program.cs b/pwiz_tools/Skyline/Executables/Tools/XLTCalc/c#/SkylineIntegration/Program.cs index cd2e6f2105b..fc4a52ef435 100644 --- a/pwiz_tools/Skyline/Executables/Tools/XLTCalc/c#/SkylineIntegration/Program.cs +++ b/pwiz_tools/Skyline/Executables/Tools/XLTCalc/c#/SkylineIntegration/Program.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Diagnostics; using System.Windows.Forms; using SkylineTool; diff --git a/pwiz_tools/Skyline/Executables/Tools/XLTCalc/c#/SkylineIntegration/Properties/AssemblyInfo.cs b/pwiz_tools/Skyline/Executables/Tools/XLTCalc/c#/SkylineIntegration/Properties/AssemblyInfo.cs index 36f5cd357af..3fbd0ccd974 100644 --- a/pwiz_tools/Skyline/Executables/Tools/XLTCalc/c#/SkylineIntegration/Properties/AssemblyInfo.cs +++ b/pwiz_tools/Skyline/Executables/Tools/XLTCalc/c#/SkylineIntegration/Properties/AssemblyInfo.cs @@ -1,4 +1,4 @@ -using System.Reflection; +using System.Reflection; using System.Runtime.CompilerServices; using System.Runtime.InteropServices; diff --git a/pwiz_tools/Skyline/Executables/Tools/XLTCalc/c#/SkylineIntegration/Properties/Resources.Designer.cs b/pwiz_tools/Skyline/Executables/Tools/XLTCalc/c#/SkylineIntegration/Properties/Resources.Designer.cs index 4544f1dd5e0..767d9de7e8f 100644 --- a/pwiz_tools/Skyline/Executables/Tools/XLTCalc/c#/SkylineIntegration/Properties/Resources.Designer.cs +++ b/pwiz_tools/Skyline/Executables/Tools/XLTCalc/c#/SkylineIntegration/Properties/Resources.Designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Executables/Tools/XLTCalc/c#/SkylineIntegration/Properties/Settings.Designer.cs b/pwiz_tools/Skyline/Executables/Tools/XLTCalc/c#/SkylineIntegration/Properties/Settings.Designer.cs index f2fbb9b2b0c..70771c0f424 100644 --- a/pwiz_tools/Skyline/Executables/Tools/XLTCalc/c#/SkylineIntegration/Properties/Settings.Designer.cs +++ b/pwiz_tools/Skyline/Executables/Tools/XLTCalc/c#/SkylineIntegration/Properties/Settings.Designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Executables/Tools/XLTCalc/c#/SkylineIntegration/Properties/Settings.settings b/pwiz_tools/Skyline/Executables/Tools/XLTCalc/c#/SkylineIntegration/Properties/Settings.settings index abf36c5d3d7..4ed82c03dff 100644 --- a/pwiz_tools/Skyline/Executables/Tools/XLTCalc/c#/SkylineIntegration/Properties/Settings.settings +++ b/pwiz_tools/Skyline/Executables/Tools/XLTCalc/c#/SkylineIntegration/Properties/Settings.settings @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Executables/Tools/XLTCalc/c#/SkylineIntegration/SkylineIntegration.csproj b/pwiz_tools/Skyline/Executables/Tools/XLTCalc/c#/SkylineIntegration/SkylineIntegration.csproj index 029358e5567..6f59d4b54a5 100644 --- a/pwiz_tools/Skyline/Executables/Tools/XLTCalc/c#/SkylineIntegration/SkylineIntegration.csproj +++ b/pwiz_tools/Skyline/Executables/Tools/XLTCalc/c#/SkylineIntegration/SkylineIntegration.csproj @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Executables/UniModCompiler/Modification.cs b/pwiz_tools/Skyline/Executables/UniModCompiler/Modification.cs index 274679343e6..3c51a396ecb 100644 --- a/pwiz_tools/Skyline/Executables/UniModCompiler/Modification.cs +++ b/pwiz_tools/Skyline/Executables/UniModCompiler/Modification.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:2.0.50727.4206 diff --git a/pwiz_tools/Skyline/Executables/UniModCompiler/Program.cs b/pwiz_tools/Skyline/Executables/UniModCompiler/Program.cs index 91dd643fef8..356d1976fa8 100644 --- a/pwiz_tools/Skyline/Executables/UniModCompiler/Program.cs +++ b/pwiz_tools/Skyline/Executables/UniModCompiler/Program.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Alana Killeen , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Executables/UniModCompiler/Properties/AssemblyInfo.cs b/pwiz_tools/Skyline/Executables/UniModCompiler/Properties/AssemblyInfo.cs index a416fec35a3..bd0bead9db7 100644 --- a/pwiz_tools/Skyline/Executables/UniModCompiler/Properties/AssemblyInfo.cs +++ b/pwiz_tools/Skyline/Executables/UniModCompiler/Properties/AssemblyInfo.cs @@ -1,4 +1,4 @@ -using System.Reflection; +using System.Reflection; using System.Runtime.CompilerServices; using System.Runtime.InteropServices; diff --git a/pwiz_tools/Skyline/Executables/UniModCompiler/ProteinPilot_DataDictionary.cs b/pwiz_tools/Skyline/Executables/UniModCompiler/ProteinPilot_DataDictionary.cs index 875247a663f..807d834a4b9 100644 --- a/pwiz_tools/Skyline/Executables/UniModCompiler/ProteinPilot_DataDictionary.cs +++ b/pwiz_tools/Skyline/Executables/UniModCompiler/ProteinPilot_DataDictionary.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.269 diff --git a/pwiz_tools/Skyline/Executables/UniModCompiler/UniModCompiler.csproj b/pwiz_tools/Skyline/Executables/UniModCompiler/UniModCompiler.csproj index fa50e27dd2b..a58be596930 100644 --- a/pwiz_tools/Skyline/Executables/UniModCompiler/UniModCompiler.csproj +++ b/pwiz_tools/Skyline/Executables/UniModCompiler/UniModCompiler.csproj @@ -1,4 +1,4 @@ - + Debug diff --git a/pwiz_tools/Skyline/Executables/UniModCompiler/UniModCompiler.sln b/pwiz_tools/Skyline/Executables/UniModCompiler/UniModCompiler.sln index 93644efdf88..2bab8959be0 100644 --- a/pwiz_tools/Skyline/Executables/UniModCompiler/UniModCompiler.sln +++ b/pwiz_tools/Skyline/Executables/UniModCompiler/UniModCompiler.sln @@ -1,4 +1,4 @@ - + Microsoft Visual Studio Solution File, Format Version 12.00 # Visual Studio 2013 VisualStudioVersion = 12.0.40629.0 diff --git a/pwiz_tools/Skyline/FileUI/BaseFileDialogNE.cs b/pwiz_tools/Skyline/FileUI/BaseFileDialogNE.cs index ceeceb44bc3..6f5b6fb529e 100644 --- a/pwiz_tools/Skyline/FileUI/BaseFileDialogNE.cs +++ b/pwiz_tools/Skyline/FileUI/BaseFileDialogNE.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2009 Vanderbilt University - Nashville, TN 37232 diff --git a/pwiz_tools/Skyline/FileUI/ChooseIrtStandardPeptidesDlg.Designer.cs b/pwiz_tools/Skyline/FileUI/ChooseIrtStandardPeptidesDlg.Designer.cs index 710c0f55ca8..3a6d05752d8 100644 --- a/pwiz_tools/Skyline/FileUI/ChooseIrtStandardPeptidesDlg.Designer.cs +++ b/pwiz_tools/Skyline/FileUI/ChooseIrtStandardPeptidesDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.FileUI +namespace pwiz.Skyline.FileUI { partial class ChooseIrtStandardPeptidesDlg { diff --git a/pwiz_tools/Skyline/FileUI/ChooseIrtStandardPeptidesDlg.cs b/pwiz_tools/Skyline/FileUI/ChooseIrtStandardPeptidesDlg.cs index a689dd23f14..8b38fd8a398 100644 --- a/pwiz_tools/Skyline/FileUI/ChooseIrtStandardPeptidesDlg.cs +++ b/pwiz_tools/Skyline/FileUI/ChooseIrtStandardPeptidesDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/FileUI/ChooseSchedulingReplicatesDlg.Designer.cs b/pwiz_tools/Skyline/FileUI/ChooseSchedulingReplicatesDlg.Designer.cs index 79cc6506fdd..bb7a0854ad1 100644 --- a/pwiz_tools/Skyline/FileUI/ChooseSchedulingReplicatesDlg.Designer.cs +++ b/pwiz_tools/Skyline/FileUI/ChooseSchedulingReplicatesDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.FileUI +namespace pwiz.Skyline.FileUI { partial class ChooseSchedulingReplicatesDlg { diff --git a/pwiz_tools/Skyline/FileUI/ChooseSchedulingReplicatesDlg.cs b/pwiz_tools/Skyline/FileUI/ChooseSchedulingReplicatesDlg.cs index da3d3717207..23e010ba069 100644 --- a/pwiz_tools/Skyline/FileUI/ChooseSchedulingReplicatesDlg.cs +++ b/pwiz_tools/Skyline/FileUI/ChooseSchedulingReplicatesDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/FileUI/CreateIrtCalculatorDlg.Designer.cs b/pwiz_tools/Skyline/FileUI/CreateIrtCalculatorDlg.Designer.cs index e750d522eef..a4466ff83a0 100644 --- a/pwiz_tools/Skyline/FileUI/CreateIrtCalculatorDlg.Designer.cs +++ b/pwiz_tools/Skyline/FileUI/CreateIrtCalculatorDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.FileUI +namespace pwiz.Skyline.FileUI { partial class CreateIrtCalculatorDlg { diff --git a/pwiz_tools/Skyline/FileUI/CreateIrtCalculatorDlg.cs b/pwiz_tools/Skyline/FileUI/CreateIrtCalculatorDlg.cs index 9add4021a85..3e28ff75374 100644 --- a/pwiz_tools/Skyline/FileUI/CreateIrtCalculatorDlg.cs +++ b/pwiz_tools/Skyline/FileUI/CreateIrtCalculatorDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Dario Amodei , * Mallick Lab, Department of Radiology, Stanford * diff --git a/pwiz_tools/Skyline/FileUI/ExportAnnotationsDlg.Designer.cs b/pwiz_tools/Skyline/FileUI/ExportAnnotationsDlg.Designer.cs index ceed557aef6..0061241706a 100644 --- a/pwiz_tools/Skyline/FileUI/ExportAnnotationsDlg.Designer.cs +++ b/pwiz_tools/Skyline/FileUI/ExportAnnotationsDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.FileUI +namespace pwiz.Skyline.FileUI { partial class ExportAnnotationsDlg { diff --git a/pwiz_tools/Skyline/FileUI/ExportAnnotationsDlg.cs b/pwiz_tools/Skyline/FileUI/ExportAnnotationsDlg.cs index 5bcdf4799fa..ee9507b64b6 100644 --- a/pwiz_tools/Skyline/FileUI/ExportAnnotationsDlg.cs +++ b/pwiz_tools/Skyline/FileUI/ExportAnnotationsDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/FileUI/ExportChromatogramDlg.Designer.cs b/pwiz_tools/Skyline/FileUI/ExportChromatogramDlg.Designer.cs index 68c861a9499..23c57a47730 100644 --- a/pwiz_tools/Skyline/FileUI/ExportChromatogramDlg.Designer.cs +++ b/pwiz_tools/Skyline/FileUI/ExportChromatogramDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.FileUI +namespace pwiz.Skyline.FileUI { partial class ExportChromatogramDlg { diff --git a/pwiz_tools/Skyline/FileUI/ExportChromatogramDlg.cs b/pwiz_tools/Skyline/FileUI/ExportChromatogramDlg.cs index 34fa37b942f..7e13be021ec 100644 --- a/pwiz_tools/Skyline/FileUI/ExportChromatogramDlg.cs +++ b/pwiz_tools/Skyline/FileUI/ExportChromatogramDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Dario Amodei , * Mallick Lab, Department of Radiology, Stanford * diff --git a/pwiz_tools/Skyline/FileUI/ExportMethodDlg.Designer.cs b/pwiz_tools/Skyline/FileUI/ExportMethodDlg.Designer.cs index a1c33503099..45f6f807c85 100644 --- a/pwiz_tools/Skyline/FileUI/ExportMethodDlg.Designer.cs +++ b/pwiz_tools/Skyline/FileUI/ExportMethodDlg.Designer.cs @@ -1,4 +1,4 @@ -using System.Windows.Forms; +using System.Windows.Forms; namespace pwiz.Skyline.FileUI { diff --git a/pwiz_tools/Skyline/FileUI/ExportMethodDlg.cs b/pwiz_tools/Skyline/FileUI/ExportMethodDlg.cs index a2f3715fda1..b534ee3f1f9 100644 --- a/pwiz_tools/Skyline/FileUI/ExportMethodDlg.cs +++ b/pwiz_tools/Skyline/FileUI/ExportMethodDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/FileUI/FileUIResources.designer.cs b/pwiz_tools/Skyline/FileUI/FileUIResources.designer.cs index 2980012d484..16aa7abff2d 100644 --- a/pwiz_tools/Skyline/FileUI/FileUIResources.designer.cs +++ b/pwiz_tools/Skyline/FileUI/FileUIResources.designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/FileUI/ImportResultsDlg.Designer.cs b/pwiz_tools/Skyline/FileUI/ImportResultsDlg.Designer.cs index 824700a621a..764ccd92b89 100644 --- a/pwiz_tools/Skyline/FileUI/ImportResultsDlg.Designer.cs +++ b/pwiz_tools/Skyline/FileUI/ImportResultsDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.FileUI +namespace pwiz.Skyline.FileUI { partial class ImportResultsDlg { diff --git a/pwiz_tools/Skyline/FileUI/ImportResultsDlg.cs b/pwiz_tools/Skyline/FileUI/ImportResultsDlg.cs index 0afdba39207..72bff49f067 100644 --- a/pwiz_tools/Skyline/FileUI/ImportResultsDlg.cs +++ b/pwiz_tools/Skyline/FileUI/ImportResultsDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/FileUI/ImportResultsLockMassDlg.Designer.cs b/pwiz_tools/Skyline/FileUI/ImportResultsLockMassDlg.Designer.cs index 967a325333f..0b306b89d97 100644 --- a/pwiz_tools/Skyline/FileUI/ImportResultsLockMassDlg.Designer.cs +++ b/pwiz_tools/Skyline/FileUI/ImportResultsLockMassDlg.Designer.cs @@ -1,4 +1,4 @@ -using System.Drawing; +using System.Drawing; namespace pwiz.Skyline.FileUI { diff --git a/pwiz_tools/Skyline/FileUI/ImportResultsLockMassDlg.cs b/pwiz_tools/Skyline/FileUI/ImportResultsLockMassDlg.cs index 6020c1a29b7..433cb4da048 100644 --- a/pwiz_tools/Skyline/FileUI/ImportResultsLockMassDlg.cs +++ b/pwiz_tools/Skyline/FileUI/ImportResultsLockMassDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/FileUI/ImportResultsNameDlg.Designer.cs b/pwiz_tools/Skyline/FileUI/ImportResultsNameDlg.Designer.cs index 102ba709791..59207ba2d57 100644 --- a/pwiz_tools/Skyline/FileUI/ImportResultsNameDlg.Designer.cs +++ b/pwiz_tools/Skyline/FileUI/ImportResultsNameDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.FileUI +namespace pwiz.Skyline.FileUI { partial class ImportResultsNameDlg { diff --git a/pwiz_tools/Skyline/FileUI/ImportResultsNameDlg.cs b/pwiz_tools/Skyline/FileUI/ImportResultsNameDlg.cs index d3dce90b32e..2478181a3ba 100644 --- a/pwiz_tools/Skyline/FileUI/ImportResultsNameDlg.cs +++ b/pwiz_tools/Skyline/FileUI/ImportResultsNameDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/FileUI/ImportResultsSamplesDlg.Designer.cs b/pwiz_tools/Skyline/FileUI/ImportResultsSamplesDlg.Designer.cs index 12b686aa97f..8cc562b0c46 100644 --- a/pwiz_tools/Skyline/FileUI/ImportResultsSamplesDlg.Designer.cs +++ b/pwiz_tools/Skyline/FileUI/ImportResultsSamplesDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.FileUI +namespace pwiz.Skyline.FileUI { partial class ImportResultsSamplesDlg { diff --git a/pwiz_tools/Skyline/FileUI/ImportResultsSamplesDlg.cs b/pwiz_tools/Skyline/FileUI/ImportResultsSamplesDlg.cs index ec5e2ac4eb4..40d784be112 100644 --- a/pwiz_tools/Skyline/FileUI/ImportResultsSamplesDlg.cs +++ b/pwiz_tools/Skyline/FileUI/ImportResultsSamplesDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/FileUI/ImportTransitionListColumnSelectDlg.Designer.cs b/pwiz_tools/Skyline/FileUI/ImportTransitionListColumnSelectDlg.Designer.cs index 812529ed720..692c395e81b 100644 --- a/pwiz_tools/Skyline/FileUI/ImportTransitionListColumnSelectDlg.Designer.cs +++ b/pwiz_tools/Skyline/FileUI/ImportTransitionListColumnSelectDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.FileUI +namespace pwiz.Skyline.FileUI { partial class ImportTransitionListColumnSelectDlg { diff --git a/pwiz_tools/Skyline/FileUI/ImportTransitionListColumnSelectDlg.cs b/pwiz_tools/Skyline/FileUI/ImportTransitionListColumnSelectDlg.cs index a7e48bc482d..aeccad3f44b 100644 --- a/pwiz_tools/Skyline/FileUI/ImportTransitionListColumnSelectDlg.cs +++ b/pwiz_tools/Skyline/FileUI/ImportTransitionListColumnSelectDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Alex MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/FileUI/ImportTransitionListErrorDlg.Designer.cs b/pwiz_tools/Skyline/FileUI/ImportTransitionListErrorDlg.Designer.cs index 2c09d034a11..a110d8576ea 100644 --- a/pwiz_tools/Skyline/FileUI/ImportTransitionListErrorDlg.Designer.cs +++ b/pwiz_tools/Skyline/FileUI/ImportTransitionListErrorDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.FileUI +namespace pwiz.Skyline.FileUI { partial class ImportTransitionListErrorDlg { diff --git a/pwiz_tools/Skyline/FileUI/ImportTransitionListErrorDlg.cs b/pwiz_tools/Skyline/FileUI/ImportTransitionListErrorDlg.cs index e3d5095671a..e5fb2acfb7f 100644 --- a/pwiz_tools/Skyline/FileUI/ImportTransitionListErrorDlg.cs +++ b/pwiz_tools/Skyline/FileUI/ImportTransitionListErrorDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Dario Amodei , * Mallick Lab, Department of Radiology, Stanford * diff --git a/pwiz_tools/Skyline/FileUI/InsertTransitionListDlg.Designer.cs b/pwiz_tools/Skyline/FileUI/InsertTransitionListDlg.Designer.cs index 3b4403f31e5..13bc39316c4 100644 --- a/pwiz_tools/Skyline/FileUI/InsertTransitionListDlg.Designer.cs +++ b/pwiz_tools/Skyline/FileUI/InsertTransitionListDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.FileUI +namespace pwiz.Skyline.FileUI { partial class InsertTransitionListDlg { diff --git a/pwiz_tools/Skyline/FileUI/InsertTransitionListDlg.cs b/pwiz_tools/Skyline/FileUI/InsertTransitionListDlg.cs index ef6bf853a1c..0c8ce1fc48f 100644 --- a/pwiz_tools/Skyline/FileUI/InsertTransitionListDlg.cs +++ b/pwiz_tools/Skyline/FileUI/InsertTransitionListDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Henry Estberg , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/FileUI/MProphetFeaturesDlg.Designer.cs b/pwiz_tools/Skyline/FileUI/MProphetFeaturesDlg.Designer.cs index fa1c4713dc3..30485baf8d2 100644 --- a/pwiz_tools/Skyline/FileUI/MProphetFeaturesDlg.Designer.cs +++ b/pwiz_tools/Skyline/FileUI/MProphetFeaturesDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.FileUI +namespace pwiz.Skyline.FileUI { partial class MProphetFeaturesDlg { diff --git a/pwiz_tools/Skyline/FileUI/MProphetFeaturesDlg.cs b/pwiz_tools/Skyline/FileUI/MProphetFeaturesDlg.cs index 51e4ff76683..2af061eb21c 100644 --- a/pwiz_tools/Skyline/FileUI/MProphetFeaturesDlg.cs +++ b/pwiz_tools/Skyline/FileUI/MProphetFeaturesDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/FileUI/ManageResultsDlg.Designer.cs b/pwiz_tools/Skyline/FileUI/ManageResultsDlg.Designer.cs index f5cfb18018c..d1c2394a764 100644 --- a/pwiz_tools/Skyline/FileUI/ManageResultsDlg.Designer.cs +++ b/pwiz_tools/Skyline/FileUI/ManageResultsDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.FileUI +namespace pwiz.Skyline.FileUI { partial class ManageResultsDlg { diff --git a/pwiz_tools/Skyline/FileUI/ManageResultsDlg.cs b/pwiz_tools/Skyline/FileUI/ManageResultsDlg.cs index 97121797856..9b4fe88cf5f 100644 --- a/pwiz_tools/Skyline/FileUI/ManageResultsDlg.cs +++ b/pwiz_tools/Skyline/FileUI/ManageResultsDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/FileUI/MinimizeResultsDlg.cs b/pwiz_tools/Skyline/FileUI/MinimizeResultsDlg.cs index c40c9917498..4358c1695ef 100644 --- a/pwiz_tools/Skyline/FileUI/MinimizeResultsDlg.cs +++ b/pwiz_tools/Skyline/FileUI/MinimizeResultsDlg.cs @@ -1,4 +1,4 @@ - + /* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW diff --git a/pwiz_tools/Skyline/FileUI/OpenDataSourceDialog.cs b/pwiz_tools/Skyline/FileUI/OpenDataSourceDialog.cs index a089a57e3a4..f24f4e68caa 100644 --- a/pwiz_tools/Skyline/FileUI/OpenDataSourceDialog.cs +++ b/pwiz_tools/Skyline/FileUI/OpenDataSourceDialog.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2009 Vanderbilt University - Nashville, TN 37232 diff --git a/pwiz_tools/Skyline/FileUI/OpenFileDialogNE.cs b/pwiz_tools/Skyline/FileUI/OpenFileDialogNE.cs index b3fe6cbea46..7c06bb10874 100644 --- a/pwiz_tools/Skyline/FileUI/OpenFileDialogNE.cs +++ b/pwiz_tools/Skyline/FileUI/OpenFileDialogNE.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2009 Vanderbilt University - Nashville, TN 37232 diff --git a/pwiz_tools/Skyline/FileUI/PeakBoundaryImporterUI.cs b/pwiz_tools/Skyline/FileUI/PeakBoundaryImporterUI.cs index 0e672462f05..7d51dd686ea 100644 --- a/pwiz_tools/Skyline/FileUI/PeakBoundaryImporterUI.cs +++ b/pwiz_tools/Skyline/FileUI/PeakBoundaryImporterUI.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Dario Amodei , * Mallick Lab, Department of Radiology, Stanford University * diff --git a/pwiz_tools/Skyline/FileUI/PeptideSearch/BuildLibraryGridView.cs b/pwiz_tools/Skyline/FileUI/PeptideSearch/BuildLibraryGridView.cs index 63f5a98eb06..e4cf5245e0d 100644 --- a/pwiz_tools/Skyline/FileUI/PeptideSearch/BuildLibraryGridView.cs +++ b/pwiz_tools/Skyline/FileUI/PeptideSearch/BuildLibraryGridView.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/FileUI/PeptideSearch/BuildPeptideSearchLibraryControl.cs b/pwiz_tools/Skyline/FileUI/PeptideSearch/BuildPeptideSearchLibraryControl.cs index 4cee12172d5..09dcecd97a8 100644 --- a/pwiz_tools/Skyline/FileUI/PeptideSearch/BuildPeptideSearchLibraryControl.cs +++ b/pwiz_tools/Skyline/FileUI/PeptideSearch/BuildPeptideSearchLibraryControl.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tahmina Jahan , * UWPR, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/FileUI/PeptideSearch/ConverterSettingsControl.Designer.cs b/pwiz_tools/Skyline/FileUI/PeptideSearch/ConverterSettingsControl.Designer.cs index 5fe235c43ef..7d6f29a7fa2 100644 --- a/pwiz_tools/Skyline/FileUI/PeptideSearch/ConverterSettingsControl.Designer.cs +++ b/pwiz_tools/Skyline/FileUI/PeptideSearch/ConverterSettingsControl.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.FileUI.PeptideSearch +namespace pwiz.Skyline.FileUI.PeptideSearch { partial class ConverterSettingsControl { diff --git a/pwiz_tools/Skyline/FileUI/PeptideSearch/ConverterSettingsControl.cs b/pwiz_tools/Skyline/FileUI/PeptideSearch/ConverterSettingsControl.cs index 350eac46824..dae4f95fa24 100644 --- a/pwiz_tools/Skyline/FileUI/PeptideSearch/ConverterSettingsControl.cs +++ b/pwiz_tools/Skyline/FileUI/PeptideSearch/ConverterSettingsControl.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2021 University of Washington - Seattle, WA diff --git a/pwiz_tools/Skyline/FileUI/PeptideSearch/DDASearchControl.cs b/pwiz_tools/Skyline/FileUI/PeptideSearch/DDASearchControl.cs index 3b8479a6263..43c1d777050 100644 --- a/pwiz_tools/Skyline/FileUI/PeptideSearch/DDASearchControl.cs +++ b/pwiz_tools/Skyline/FileUI/PeptideSearch/DDASearchControl.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2022 University of Washington - Seattle, WA diff --git a/pwiz_tools/Skyline/FileUI/PeptideSearch/EncyclopeDiaSearchDlg.Designer.cs b/pwiz_tools/Skyline/FileUI/PeptideSearch/EncyclopeDiaSearchDlg.Designer.cs index 9a69fe3463e..a9191923fcd 100644 --- a/pwiz_tools/Skyline/FileUI/PeptideSearch/EncyclopeDiaSearchDlg.Designer.cs +++ b/pwiz_tools/Skyline/FileUI/PeptideSearch/EncyclopeDiaSearchDlg.Designer.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2022 University of Washington - Seattle, WA diff --git a/pwiz_tools/Skyline/FileUI/PeptideSearch/EncyclopeDiaSearchDlg.cs b/pwiz_tools/Skyline/FileUI/PeptideSearch/EncyclopeDiaSearchDlg.cs index df895fbcb81..402fb0f7861 100644 --- a/pwiz_tools/Skyline/FileUI/PeptideSearch/EncyclopeDiaSearchDlg.cs +++ b/pwiz_tools/Skyline/FileUI/PeptideSearch/EncyclopeDiaSearchDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2022 University of Washington - Seattle, WA diff --git a/pwiz_tools/Skyline/FileUI/PeptideSearch/HardklorSearchControl.cs b/pwiz_tools/Skyline/FileUI/PeptideSearch/HardklorSearchControl.cs index 743f994e656..b23ca429639 100644 --- a/pwiz_tools/Skyline/FileUI/PeptideSearch/HardklorSearchControl.cs +++ b/pwiz_tools/Skyline/FileUI/PeptideSearch/HardklorSearchControl.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt * * Copyright 2024 University of Washington - Seattle, WA diff --git a/pwiz_tools/Skyline/FileUI/PeptideSearch/IImportResultsControl.cs b/pwiz_tools/Skyline/FileUI/PeptideSearch/IImportResultsControl.cs index d7bcf8aab00..c1bb5325fad 100644 --- a/pwiz_tools/Skyline/FileUI/PeptideSearch/IImportResultsControl.cs +++ b/pwiz_tools/Skyline/FileUI/PeptideSearch/IImportResultsControl.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * UWPR, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/FileUI/PeptideSearch/ImportFastaControl.cs b/pwiz_tools/Skyline/FileUI/PeptideSearch/ImportFastaControl.cs index 45c5f678cd0..313b6462c91 100644 --- a/pwiz_tools/Skyline/FileUI/PeptideSearch/ImportFastaControl.cs +++ b/pwiz_tools/Skyline/FileUI/PeptideSearch/ImportFastaControl.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tahmina Jahan , * UWPR, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/FileUI/PeptideSearch/ImportPeptideSearchDlg.cs b/pwiz_tools/Skyline/FileUI/PeptideSearch/ImportPeptideSearchDlg.cs index fa0c6406176..764839b015e 100644 --- a/pwiz_tools/Skyline/FileUI/PeptideSearch/ImportPeptideSearchDlg.cs +++ b/pwiz_tools/Skyline/FileUI/PeptideSearch/ImportPeptideSearchDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tahmina Jahan , * UWPR, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/FileUI/PeptideSearch/ImportResultsControl.cs b/pwiz_tools/Skyline/FileUI/PeptideSearch/ImportResultsControl.cs index 9a06bf52249..265a8c63fa2 100644 --- a/pwiz_tools/Skyline/FileUI/PeptideSearch/ImportResultsControl.cs +++ b/pwiz_tools/Skyline/FileUI/PeptideSearch/ImportResultsControl.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tahmina Jahan , * UWPR, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/FileUI/PeptideSearch/ImportResultsDIAControl.Designer.cs b/pwiz_tools/Skyline/FileUI/PeptideSearch/ImportResultsDIAControl.Designer.cs index 0870530dac0..0238b5c355b 100644 --- a/pwiz_tools/Skyline/FileUI/PeptideSearch/ImportResultsDIAControl.Designer.cs +++ b/pwiz_tools/Skyline/FileUI/PeptideSearch/ImportResultsDIAControl.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.FileUI.PeptideSearch +namespace pwiz.Skyline.FileUI.PeptideSearch { partial class ImportResultsDIAControl { diff --git a/pwiz_tools/Skyline/FileUI/PeptideSearch/ImportResultsDIAControl.cs b/pwiz_tools/Skyline/FileUI/PeptideSearch/ImportResultsDIAControl.cs index d2145b635fb..ff22ffd2ecd 100644 --- a/pwiz_tools/Skyline/FileUI/PeptideSearch/ImportResultsDIAControl.cs +++ b/pwiz_tools/Skyline/FileUI/PeptideSearch/ImportResultsDIAControl.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * UWPR, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/FileUI/PeptideSearch/MatchModificationsControl.Designer.cs b/pwiz_tools/Skyline/FileUI/PeptideSearch/MatchModificationsControl.Designer.cs index e62969a415f..83b092238a8 100644 --- a/pwiz_tools/Skyline/FileUI/PeptideSearch/MatchModificationsControl.Designer.cs +++ b/pwiz_tools/Skyline/FileUI/PeptideSearch/MatchModificationsControl.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.FileUI.PeptideSearch +namespace pwiz.Skyline.FileUI.PeptideSearch { partial class MatchModificationsControl { diff --git a/pwiz_tools/Skyline/FileUI/PeptideSearch/MatchModificationsControl.cs b/pwiz_tools/Skyline/FileUI/PeptideSearch/MatchModificationsControl.cs index f541e5db066..74ec82ca58b 100644 --- a/pwiz_tools/Skyline/FileUI/PeptideSearch/MatchModificationsControl.cs +++ b/pwiz_tools/Skyline/FileUI/PeptideSearch/MatchModificationsControl.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/FileUI/PeptideSearch/PeptideSearchResources.designer.cs b/pwiz_tools/Skyline/FileUI/PeptideSearch/PeptideSearchResources.designer.cs index 7faf49c743e..a8144a15cbb 100644 --- a/pwiz_tools/Skyline/FileUI/PeptideSearch/PeptideSearchResources.designer.cs +++ b/pwiz_tools/Skyline/FileUI/PeptideSearch/PeptideSearchResources.designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/FileUI/PeptideSearch/SearchControl.Designer.cs b/pwiz_tools/Skyline/FileUI/PeptideSearch/SearchControl.Designer.cs index 77362b36e48..404aee231d2 100644 --- a/pwiz_tools/Skyline/FileUI/PeptideSearch/SearchControl.Designer.cs +++ b/pwiz_tools/Skyline/FileUI/PeptideSearch/SearchControl.Designer.cs @@ -1,4 +1,4 @@ -using pwiz.Common.Controls; +using pwiz.Common.Controls; namespace pwiz.Skyline.FileUI.PeptideSearch { diff --git a/pwiz_tools/Skyline/FileUI/PeptideSearch/SearchControl.cs b/pwiz_tools/Skyline/FileUI/PeptideSearch/SearchControl.cs index 586f0995ef1..9bfc3dc5df4 100644 --- a/pwiz_tools/Skyline/FileUI/PeptideSearch/SearchControl.cs +++ b/pwiz_tools/Skyline/FileUI/PeptideSearch/SearchControl.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Viktoria Dorfer , * Bioinformatics Research Group, University of Applied Sciences Upper Austria * diff --git a/pwiz_tools/Skyline/FileUI/PeptideSearch/SearchSettingsControl.Designer.cs b/pwiz_tools/Skyline/FileUI/PeptideSearch/SearchSettingsControl.Designer.cs index 36d7419e233..fbd331a5d55 100644 --- a/pwiz_tools/Skyline/FileUI/PeptideSearch/SearchSettingsControl.Designer.cs +++ b/pwiz_tools/Skyline/FileUI/PeptideSearch/SearchSettingsControl.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.FileUI.PeptideSearch +namespace pwiz.Skyline.FileUI.PeptideSearch { partial class SearchSettingsControl { diff --git a/pwiz_tools/Skyline/FileUI/PeptideSearch/SearchSettingsControl.cs b/pwiz_tools/Skyline/FileUI/PeptideSearch/SearchSettingsControl.cs index 88e881ea3bc..1db20552875 100644 --- a/pwiz_tools/Skyline/FileUI/PeptideSearch/SearchSettingsControl.cs +++ b/pwiz_tools/Skyline/FileUI/PeptideSearch/SearchSettingsControl.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Viktoria Dorfer , * Bioinformatics Research Group, University of Applied Sciences Upper Austria * diff --git a/pwiz_tools/Skyline/FileUI/PeptideSearch/TransitionSettingsControl.Designer.cs b/pwiz_tools/Skyline/FileUI/PeptideSearch/TransitionSettingsControl.Designer.cs index 2597606a1de..5a2301fba7d 100644 --- a/pwiz_tools/Skyline/FileUI/PeptideSearch/TransitionSettingsControl.Designer.cs +++ b/pwiz_tools/Skyline/FileUI/PeptideSearch/TransitionSettingsControl.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.FileUI.PeptideSearch +namespace pwiz.Skyline.FileUI.PeptideSearch { partial class TransitionSettingsControl { diff --git a/pwiz_tools/Skyline/FileUI/PeptideSearch/TransitionSettingsControl.cs b/pwiz_tools/Skyline/FileUI/PeptideSearch/TransitionSettingsControl.cs index 01d0b07b6b9..6cc5bc44601 100644 --- a/pwiz_tools/Skyline/FileUI/PeptideSearch/TransitionSettingsControl.cs +++ b/pwiz_tools/Skyline/FileUI/PeptideSearch/TransitionSettingsControl.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections.Generic; using System.Drawing; using System.Globalization; diff --git a/pwiz_tools/Skyline/FileUI/PublishDocumentDlgArdia.cs b/pwiz_tools/Skyline/FileUI/PublishDocumentDlgArdia.cs index e6f4d14ee7e..28ff2953d12 100644 --- a/pwiz_tools/Skyline/FileUI/PublishDocumentDlgArdia.cs +++ b/pwiz_tools/Skyline/FileUI/PublishDocumentDlgArdia.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2025 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Skyline/FileUI/PublishDocumentDlgBase.cs b/pwiz_tools/Skyline/FileUI/PublishDocumentDlgBase.cs index 8195a8211b5..179e1daeb01 100644 --- a/pwiz_tools/Skyline/FileUI/PublishDocumentDlgBase.cs +++ b/pwiz_tools/Skyline/FileUI/PublishDocumentDlgBase.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Shannon Joyner , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/FileUI/PublishDocumentDlgPanorama.cs b/pwiz_tools/Skyline/FileUI/PublishDocumentDlgPanorama.cs index b2684c82863..8eec91c70b1 100644 --- a/pwiz_tools/Skyline/FileUI/PublishDocumentDlgPanorama.cs +++ b/pwiz_tools/Skyline/FileUI/PublishDocumentDlgPanorama.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Shannon Joyner , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/FileUI/RenameResultDlg.Designer.cs b/pwiz_tools/Skyline/FileUI/RenameResultDlg.Designer.cs index 92e96b64dd0..4ecb599e71c 100644 --- a/pwiz_tools/Skyline/FileUI/RenameResultDlg.Designer.cs +++ b/pwiz_tools/Skyline/FileUI/RenameResultDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.FileUI +namespace pwiz.Skyline.FileUI { partial class RenameResultDlg { diff --git a/pwiz_tools/Skyline/FileUI/RenameResultDlg.cs b/pwiz_tools/Skyline/FileUI/RenameResultDlg.cs index 1b0266e1c40..942c47177fa 100644 --- a/pwiz_tools/Skyline/FileUI/RenameResultDlg.cs +++ b/pwiz_tools/Skyline/FileUI/RenameResultDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/FileUI/RescoreResultsDlg.Designer.cs b/pwiz_tools/Skyline/FileUI/RescoreResultsDlg.Designer.cs index b81398613ac..b0af6cc657d 100644 --- a/pwiz_tools/Skyline/FileUI/RescoreResultsDlg.Designer.cs +++ b/pwiz_tools/Skyline/FileUI/RescoreResultsDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.FileUI +namespace pwiz.Skyline.FileUI { partial class RescoreResultsDlg { diff --git a/pwiz_tools/Skyline/FileUI/RescoreResultsDlg.cs b/pwiz_tools/Skyline/FileUI/RescoreResultsDlg.cs index 4c33baf3054..b0c3cc1bf3a 100644 --- a/pwiz_tools/Skyline/FileUI/RescoreResultsDlg.cs +++ b/pwiz_tools/Skyline/FileUI/RescoreResultsDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/FileUI/SchedulingOptionsDlg.Designer.cs b/pwiz_tools/Skyline/FileUI/SchedulingOptionsDlg.Designer.cs index f13cafb024a..954b2517d76 100644 --- a/pwiz_tools/Skyline/FileUI/SchedulingOptionsDlg.Designer.cs +++ b/pwiz_tools/Skyline/FileUI/SchedulingOptionsDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.FileUI +namespace pwiz.Skyline.FileUI { partial class SchedulingOptionsDlg { diff --git a/pwiz_tools/Skyline/FileUI/SchedulingOptionsDlg.cs b/pwiz_tools/Skyline/FileUI/SchedulingOptionsDlg.cs index dabcdba43e8..6daba87bce4 100644 --- a/pwiz_tools/Skyline/FileUI/SchedulingOptionsDlg.cs +++ b/pwiz_tools/Skyline/FileUI/SchedulingOptionsDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Mimi Fung , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/FileUI/ShareListDlg.Designer.cs b/pwiz_tools/Skyline/FileUI/ShareListDlg.Designer.cs index a4fe7753531..ac31fdc5954 100644 --- a/pwiz_tools/Skyline/FileUI/ShareListDlg.Designer.cs +++ b/pwiz_tools/Skyline/FileUI/ShareListDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.FileUI +namespace pwiz.Skyline.FileUI { partial class ShareListDlg { diff --git a/pwiz_tools/Skyline/FileUI/ShareListDlg.cs b/pwiz_tools/Skyline/FileUI/ShareListDlg.cs index 7f3dd6d4dc1..dfb6f022dbd 100644 --- a/pwiz_tools/Skyline/FileUI/ShareListDlg.cs +++ b/pwiz_tools/Skyline/FileUI/ShareListDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/FileUI/SkypSupport.cs b/pwiz_tools/Skyline/FileUI/SkypSupport.cs index c45cf444097..4c602e11094 100644 --- a/pwiz_tools/Skyline/FileUI/SkypSupport.cs +++ b/pwiz_tools/Skyline/FileUI/SkypSupport.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections.Generic; using System.Net; using System.Windows.Forms; diff --git a/pwiz_tools/Skyline/GenericFormClassNames.cs b/pwiz_tools/Skyline/GenericFormClassNames.cs index 556d79c7f1f..bc8890f8f44 100644 --- a/pwiz_tools/Skyline/GenericFormClassNames.cs +++ b/pwiz_tools/Skyline/GenericFormClassNames.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Menus/ChromatogramContextMenu.Designer.cs b/pwiz_tools/Skyline/Menus/ChromatogramContextMenu.Designer.cs index 6ada41ed13d..420e299cca2 100644 --- a/pwiz_tools/Skyline/Menus/ChromatogramContextMenu.Designer.cs +++ b/pwiz_tools/Skyline/Menus/ChromatogramContextMenu.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Menus +namespace pwiz.Skyline.Menus { partial class ChromatogramContextMenu { diff --git a/pwiz_tools/Skyline/Menus/ChromatogramContextMenu.cs b/pwiz_tools/Skyline/Menus/ChromatogramContextMenu.cs index 66d8004c8e3..de678f48dbd 100644 --- a/pwiz_tools/Skyline/Menus/ChromatogramContextMenu.cs +++ b/pwiz_tools/Skyline/Menus/ChromatogramContextMenu.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Menus/EditMenu.Designer.cs b/pwiz_tools/Skyline/Menus/EditMenu.Designer.cs index 3659034d060..71e22042291 100644 --- a/pwiz_tools/Skyline/Menus/EditMenu.Designer.cs +++ b/pwiz_tools/Skyline/Menus/EditMenu.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Menus +namespace pwiz.Skyline.Menus { partial class EditMenu { diff --git a/pwiz_tools/Skyline/Menus/EditMenu.cs b/pwiz_tools/Skyline/Menus/EditMenu.cs index c43a760b1ec..ee4c72619a8 100644 --- a/pwiz_tools/Skyline/Menus/EditMenu.cs +++ b/pwiz_tools/Skyline/Menus/EditMenu.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Menus/MenusResources.designer.cs b/pwiz_tools/Skyline/Menus/MenusResources.designer.cs index 3a39f122cdf..42817e2c563 100644 --- a/pwiz_tools/Skyline/Menus/MenusResources.designer.cs +++ b/pwiz_tools/Skyline/Menus/MenusResources.designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Menus/RefineMenu.Designer.cs b/pwiz_tools/Skyline/Menus/RefineMenu.Designer.cs index 3277e2f5507..bf1834554a6 100644 --- a/pwiz_tools/Skyline/Menus/RefineMenu.Designer.cs +++ b/pwiz_tools/Skyline/Menus/RefineMenu.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Menus +namespace pwiz.Skyline.Menus { partial class RefineMenu { diff --git a/pwiz_tools/Skyline/Menus/RefineMenu.cs b/pwiz_tools/Skyline/Menus/RefineMenu.cs index aee0dbe1b2e..303d9482daf 100644 --- a/pwiz_tools/Skyline/Menus/RefineMenu.cs +++ b/pwiz_tools/Skyline/Menus/RefineMenu.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Menus/SkylineControl.cs b/pwiz_tools/Skyline/Menus/SkylineControl.cs index 7583bde65ed..93e3d2e02d4 100644 --- a/pwiz_tools/Skyline/Menus/SkylineControl.cs +++ b/pwiz_tools/Skyline/Menus/SkylineControl.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Menus/ViewMenu.Designer.cs b/pwiz_tools/Skyline/Menus/ViewMenu.Designer.cs index 1f49bb9a498..715639887bd 100644 --- a/pwiz_tools/Skyline/Menus/ViewMenu.Designer.cs +++ b/pwiz_tools/Skyline/Menus/ViewMenu.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.Menus +namespace pwiz.Skyline.Menus { partial class ViewMenu { @@ -135,6 +135,8 @@ private void InitializeComponent() this.massErrorHistogram2DMenuItem = new System.Windows.Forms.ToolStripMenuItem(); this.calibrationCurveMenuItem = new System.Windows.Forms.ToolStripMenuItem(); this.toolStripSeparator36 = new System.Windows.Forms.ToolStripSeparator(); + this.viewPropertiesMenuItem = new System.Windows.Forms.ToolStripMenuItem(); + this.toolStripSeparator63 = new System.Windows.Forms.ToolStripSeparator(); this.toolBarToolStripMenuItem = new System.Windows.Forms.ToolStripMenuItem(); this.statusToolStripMenuItem = new System.Windows.Forms.ToolStripMenuItem(); this.menuStrip1.SuspendLayout(); @@ -157,6 +159,8 @@ private void InitializeComponent() this.userInterfaceToolStripMenuItem, this.toolStripSeparator1, this.viewFilesMenuItem, + this.toolStripSeparator63, + this.viewPropertiesMenuItem, this.toolStripSeparator41, this.liveReportsMenuItem, this.librariesMenuItem, @@ -904,6 +908,13 @@ private void InitializeComponent() this.toolStripSeparator36.Name = "toolStripSeparator36"; resources.ApplyResources(this.toolStripSeparator36, "toolStripSeparator36"); // + // viewPropertiesMenuItem + // + this.viewPropertiesMenuItem.CheckOnClick = true; + this.viewPropertiesMenuItem.Name = "viewPropertiesMenuItem"; + resources.ApplyResources(this.viewPropertiesMenuItem, "viewPropertiesMenuItem"); + this.viewPropertiesMenuItem.Click += new System.EventHandler(this.viewPropertiesMenuItem_Click); + // // toolBarToolStripMenuItem // this.toolBarToolStripMenuItem.Checked = true; @@ -1044,6 +1055,8 @@ private void InitializeComponent() private System.Windows.Forms.ToolStripMenuItem spectrumGridMenuItem; private System.Windows.Forms.ToolStripMenuItem librariesMenuItem; private System.Windows.Forms.ToolStripMenuItem viewFilesMenuItem; + private System.Windows.Forms.ToolStripMenuItem viewPropertiesMenuItem; private System.Windows.Forms.ToolStripSeparator toolStripSeparator1; + private System.Windows.Forms.ToolStripSeparator toolStripSeparator63; } } diff --git a/pwiz_tools/Skyline/Menus/ViewMenu.cs b/pwiz_tools/Skyline/Menus/ViewMenu.cs index dbe6ff2effd..12a88c43f61 100644 --- a/pwiz_tools/Skyline/Menus/ViewMenu.cs +++ b/pwiz_tools/Skyline/Menus/ViewMenu.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * @@ -915,6 +915,7 @@ public void ViewMenuDropDownOpening() { viewTargetsMenuItem.Checked = SkylineWindow.SequenceTreeFormIsVisible; viewFilesMenuItem.Checked = SkylineWindow.FilesTreeFormIsVisible; + viewPropertiesMenuItem.Checked = SkylineWindow.PropertyGridFormIsVisible; viewModificationsMenuItem.DropDownItems.Clear(); var currentOption = DisplayModificationOption.Current; foreach (var opt in DisplayModificationOption.All) @@ -1088,5 +1089,14 @@ private void ShowFilesWindow(bool isChecked) { SkylineWindow.ShowFilesTreeForm(isChecked); } + + private void viewPropertiesMenuItem_Click(object sender, EventArgs e) + { + if (!(sender is ToolStripMenuItem toolStripMenuItem)) + throw new InvalidOperationException(@"viewPropertiesMenuItem_Click must be triggered by a ToolStripMenuItem"); + + var isChecked = toolStripMenuItem.Checked; + SkylineWindow.ShowPropertyGridForm(isChecked); + } } } diff --git a/pwiz_tools/Skyline/Menus/ViewMenu.resx b/pwiz_tools/Skyline/Menus/ViewMenu.resx index d5d446620c4..6c1f3dc7758 100644 --- a/pwiz_tools/Skyline/Menus/ViewMenu.resx +++ b/pwiz_tools/Skyline/Menus/ViewMenu.resx @@ -894,6 +894,15 @@ 177, 6 + + 180, 22 + + + Properties + + + F4 + 180, 22 diff --git a/pwiz_tools/Skyline/Method/AbSciex/SciexOS/BuildSciexMethod.exe.config b/pwiz_tools/Skyline/Method/AbSciex/SciexOS/BuildSciexMethod.exe.config index 56efbc7b5f1..20939707c81 100644 --- a/pwiz_tools/Skyline/Method/AbSciex/SciexOS/BuildSciexMethod.exe.config +++ b/pwiz_tools/Skyline/Method/AbSciex/SciexOS/BuildSciexMethod.exe.config @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Model/AbstractDdaConverter.cs b/pwiz_tools/Skyline/Model/AbstractDdaConverter.cs index 2ada670ab31..3189981a75a 100644 --- a/pwiz_tools/Skyline/Model/AbstractDdaConverter.cs +++ b/pwiz_tools/Skyline/Model/AbstractDdaConverter.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2020 diff --git a/pwiz_tools/Skyline/Model/AbstractDdaSearchEngine.cs b/pwiz_tools/Skyline/Model/AbstractDdaSearchEngine.cs index ed25a500717..dbbd89545e9 100644 --- a/pwiz_tools/Skyline/Model/AbstractDdaSearchEngine.cs +++ b/pwiz_tools/Skyline/Model/AbstractDdaSearchEngine.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Viktoria Dorfer , * Bioinformatics Research Group, University of Applied Sciences Upper Austria * diff --git a/pwiz_tools/Skyline/Model/AbstractDiaExporter.cs b/pwiz_tools/Skyline/Model/AbstractDiaExporter.cs index c6bdeb83392..de76b888751 100644 --- a/pwiz_tools/Skyline/Model/AbstractDiaExporter.cs +++ b/pwiz_tools/Skyline/Model/AbstractDiaExporter.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/AbstractMassListExporter.cs b/pwiz_tools/Skyline/Model/AbstractMassListExporter.cs index d959817bbab..9e8b31e862f 100644 --- a/pwiz_tools/Skyline/Model/AbstractMassListExporter.cs +++ b/pwiz_tools/Skyline/Model/AbstractMassListExporter.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/AbstractModificationMatcher.cs b/pwiz_tools/Skyline/Model/AbstractModificationMatcher.cs index cce7da1895d..05fae8343e7 100644 --- a/pwiz_tools/Skyline/Model/AbstractModificationMatcher.cs +++ b/pwiz_tools/Skyline/Model/AbstractModificationMatcher.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Alana Killeen , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Annotations.cs b/pwiz_tools/Skyline/Model/Annotations.cs index 3765c66f41c..509d3e00443 100644 --- a/pwiz_tools/Skyline/Model/Annotations.cs +++ b/pwiz_tools/Skyline/Model/Annotations.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/AreaCVRefinementData.cs b/pwiz_tools/Skyline/Model/AreaCVRefinementData.cs index de2bfdcdd2d..dd7b4706017 100644 --- a/pwiz_tools/Skyline/Model/AreaCVRefinementData.cs +++ b/pwiz_tools/Skyline/Model/AreaCVRefinementData.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections.Generic; using System.Linq; using System.Threading; diff --git a/pwiz_tools/Skyline/Model/AuditLog/AuditLogEntry.cs b/pwiz_tools/Skyline/Model/AuditLog/AuditLogEntry.cs index 729dddc98f6..7e8f02c7b60 100644 --- a/pwiz_tools/Skyline/Model/AuditLog/AuditLogEntry.cs +++ b/pwiz_tools/Skyline/Model/AuditLog/AuditLogEntry.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tobias Rohde , * MacCoss Lab, Department of Genome Sciences, UW * @@ -256,7 +256,7 @@ public void WriteToFile(string fileName, string documentHash, DocumentFormat df) { using (var fileSaver = new FileSaver(fileName)) { - using (var writer = new XmlTextWriter(fileSaver.SafeName, Encoding.UTF8)) + using (var writer = new XmlTextWriter(fileSaver.SafeName, new UTF8Encoding(false))) // UTF-8 without BOM { writer.Formatting = Formatting.Indented; WriteToXmlWriter(writer, documentHash); diff --git a/pwiz_tools/Skyline/Model/AuditLog/AuditLogObject.cs b/pwiz_tools/Skyline/Model/AuditLog/AuditLogObject.cs index 504c73523a4..92c8dafc8f7 100644 --- a/pwiz_tools/Skyline/Model/AuditLog/AuditLogObject.cs +++ b/pwiz_tools/Skyline/Model/AuditLog/AuditLogObject.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tobias Rohde , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/AuditLog/AuditLogStrings.Designer.cs b/pwiz_tools/Skyline/Model/AuditLog/AuditLogStrings.Designer.cs index 8512f374ec0..201ee7ddec8 100644 --- a/pwiz_tools/Skyline/Model/AuditLog/AuditLogStrings.Designer.cs +++ b/pwiz_tools/Skyline/Model/AuditLog/AuditLogStrings.Designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Model/AuditLog/AuditLogToStringHelper.cs b/pwiz_tools/Skyline/Model/AuditLog/AuditLogToStringHelper.cs index 73c902ff657..dede056f00d 100644 --- a/pwiz_tools/Skyline/Model/AuditLog/AuditLogToStringHelper.cs +++ b/pwiz_tools/Skyline/Model/AuditLog/AuditLogToStringHelper.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections.Generic; using System.Drawing; using System.Globalization; diff --git a/pwiz_tools/Skyline/Model/AuditLog/BlockHash.cs b/pwiz_tools/Skyline/Model/AuditLog/BlockHash.cs index 978dc58e48a..4ee5abfc1a1 100644 --- a/pwiz_tools/Skyline/Model/AuditLog/BlockHash.cs +++ b/pwiz_tools/Skyline/Model/AuditLog/BlockHash.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tobias Rohde , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/AuditLog/CustomPropertyLocalizer.cs b/pwiz_tools/Skyline/Model/AuditLog/CustomPropertyLocalizer.cs index a6fc8e56760..ddbfeffcc13 100644 --- a/pwiz_tools/Skyline/Model/AuditLog/CustomPropertyLocalizer.cs +++ b/pwiz_tools/Skyline/Model/AuditLog/CustomPropertyLocalizer.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tobias Rohde , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/AuditLog/Databinding/AuditLogColumn.cs b/pwiz_tools/Skyline/Model/AuditLog/Databinding/AuditLogColumn.cs index 3b15bdbccfe..10160e639c9 100644 --- a/pwiz_tools/Skyline/Model/AuditLog/Databinding/AuditLogColumn.cs +++ b/pwiz_tools/Skyline/Model/AuditLog/Databinding/AuditLogColumn.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tobias Rohde , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/AuditLog/Databinding/AuditLogDetailRow.cs b/pwiz_tools/Skyline/Model/AuditLog/Databinding/AuditLogDetailRow.cs index 989b59b1211..5ffec546027 100644 --- a/pwiz_tools/Skyline/Model/AuditLog/Databinding/AuditLogDetailRow.cs +++ b/pwiz_tools/Skyline/Model/AuditLog/Databinding/AuditLogDetailRow.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tobias Rohde , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/AuditLog/Databinding/AuditLogRow.cs b/pwiz_tools/Skyline/Model/AuditLog/Databinding/AuditLogRow.cs index 59fe11d482b..1bb565581ad 100644 --- a/pwiz_tools/Skyline/Model/AuditLog/Databinding/AuditLogRow.cs +++ b/pwiz_tools/Skyline/Model/AuditLog/Databinding/AuditLogRow.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tobias Rohde , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/AuditLog/Databinding/AuditLogRowTime.cs b/pwiz_tools/Skyline/Model/AuditLog/Databinding/AuditLogRowTime.cs index 58abade96e7..6cf3f8e1afe 100644 --- a/pwiz_tools/Skyline/Model/AuditLog/Databinding/AuditLogRowTime.cs +++ b/pwiz_tools/Skyline/Model/AuditLog/Databinding/AuditLogRowTime.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/AuditLog/Databinding/TextImageColumn.cs b/pwiz_tools/Skyline/Model/AuditLog/Databinding/TextImageColumn.cs index 4544f59579d..65ec4a68f4b 100644 --- a/pwiz_tools/Skyline/Model/AuditLog/Databinding/TextImageColumn.cs +++ b/pwiz_tools/Skyline/Model/AuditLog/Databinding/TextImageColumn.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tobias Rohde , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/AuditLog/DiffNode.cs b/pwiz_tools/Skyline/Model/AuditLog/DiffNode.cs index 73a194a6e79..43d1c9bd9ec 100644 --- a/pwiz_tools/Skyline/Model/AuditLog/DiffNode.cs +++ b/pwiz_tools/Skyline/Model/AuditLog/DiffNode.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tobias Rohde , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/AuditLog/EnumNames.Designer.cs b/pwiz_tools/Skyline/Model/AuditLog/EnumNames.Designer.cs index aa93c166860..7144a62fff3 100644 --- a/pwiz_tools/Skyline/Model/AuditLog/EnumNames.Designer.cs +++ b/pwiz_tools/Skyline/Model/AuditLog/EnumNames.Designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Model/AuditLog/LogMessage.cs b/pwiz_tools/Skyline/Model/AuditLog/LogMessage.cs index 044b0b107fb..2ee0051c61b 100644 --- a/pwiz_tools/Skyline/Model/AuditLog/LogMessage.cs +++ b/pwiz_tools/Skyline/Model/AuditLog/LogMessage.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tobias Rohde , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/AuditLog/Property.cs b/pwiz_tools/Skyline/Model/AuditLog/Property.cs index d03769c71d9..4bbf8250e6e 100644 --- a/pwiz_tools/Skyline/Model/AuditLog/Property.cs +++ b/pwiz_tools/Skyline/Model/AuditLog/Property.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tobias Rohde , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/AuditLog/PropertyElementNames.Designer.cs b/pwiz_tools/Skyline/Model/AuditLog/PropertyElementNames.Designer.cs index 60df65187c2..58753292940 100644 --- a/pwiz_tools/Skyline/Model/AuditLog/PropertyElementNames.Designer.cs +++ b/pwiz_tools/Skyline/Model/AuditLog/PropertyElementNames.Designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Model/AuditLog/PropertyName.cs b/pwiz_tools/Skyline/Model/AuditLog/PropertyName.cs index 86e62774acf..a5c7a888a21 100644 --- a/pwiz_tools/Skyline/Model/AuditLog/PropertyName.cs +++ b/pwiz_tools/Skyline/Model/AuditLog/PropertyName.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tobias Rohde , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/AuditLog/PropertyNames.Designer.cs b/pwiz_tools/Skyline/Model/AuditLog/PropertyNames.Designer.cs index 4e2113ba7a2..b86b1c0a8f8 100644 --- a/pwiz_tools/Skyline/Model/AuditLog/PropertyNames.Designer.cs +++ b/pwiz_tools/Skyline/Model/AuditLog/PropertyNames.Designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Model/AuditLog/ReflectorEnumerator.cs b/pwiz_tools/Skyline/Model/AuditLog/ReflectorEnumerator.cs index 6c8ee4b9ab0..f0aa750cce1 100644 --- a/pwiz_tools/Skyline/Model/AuditLog/ReflectorEnumerator.cs +++ b/pwiz_tools/Skyline/Model/AuditLog/ReflectorEnumerator.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tobias Rohde , * MacCoss Lab, Department of Genome Sciences, UWboo * diff --git a/pwiz_tools/Skyline/Model/AuditLog/ReflectorToString.cs b/pwiz_tools/Skyline/Model/AuditLog/ReflectorToString.cs index b223648baeb..70369792f2b 100644 --- a/pwiz_tools/Skyline/Model/AuditLog/ReflectorToString.cs +++ b/pwiz_tools/Skyline/Model/AuditLog/ReflectorToString.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tobias Rohde , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/BackgroundLoader.cs b/pwiz_tools/Skyline/Model/BackgroundLoader.cs index 9edaf5b53f5..a3aa11b8af5 100644 --- a/pwiz_tools/Skyline/Model/BackgroundLoader.cs +++ b/pwiz_tools/Skyline/Model/BackgroundLoader.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/ColorGenerator.cs b/pwiz_tools/Skyline/Model/ColorGenerator.cs index e707e8986a8..bcec2ff8b3a 100644 --- a/pwiz_tools/Skyline/Model/ColorGenerator.cs +++ b/pwiz_tools/Skyline/Model/ColorGenerator.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/ComparePeakBoundaries.cs b/pwiz_tools/Skyline/Model/ComparePeakBoundaries.cs index e0c1cef0cc9..7f90d6a09ef 100644 --- a/pwiz_tools/Skyline/Model/ComparePeakBoundaries.cs +++ b/pwiz_tools/Skyline/Model/ComparePeakBoundaries.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Dario Amodei , * Mallick Lab, Department of Radiology, Stanford University * diff --git a/pwiz_tools/Skyline/Model/Crosslinking/ComplexFragmentIon.cs b/pwiz_tools/Skyline/Model/Crosslinking/ComplexFragmentIon.cs index 19c50d7a37c..18d0302d762 100644 --- a/pwiz_tools/Skyline/Model/Crosslinking/ComplexFragmentIon.cs +++ b/pwiz_tools/Skyline/Model/Crosslinking/ComplexFragmentIon.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Crosslinking/Crosslink.cs b/pwiz_tools/Skyline/Model/Crosslinking/Crosslink.cs index 188f9e56bbb..744690fa1cc 100644 --- a/pwiz_tools/Skyline/Model/Crosslinking/Crosslink.cs +++ b/pwiz_tools/Skyline/Model/Crosslinking/Crosslink.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Crosslinking/CrosslinkBuilder.cs b/pwiz_tools/Skyline/Model/Crosslinking/CrosslinkBuilder.cs index 6a29510106e..c8ce05e7375 100644 --- a/pwiz_tools/Skyline/Model/Crosslinking/CrosslinkBuilder.cs +++ b/pwiz_tools/Skyline/Model/Crosslinking/CrosslinkBuilder.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Crosslinking/CrosslinkPeptideBuilder.cs b/pwiz_tools/Skyline/Model/Crosslinking/CrosslinkPeptideBuilder.cs index 05f302a1427..c999b7be958 100644 --- a/pwiz_tools/Skyline/Model/Crosslinking/CrosslinkPeptideBuilder.cs +++ b/pwiz_tools/Skyline/Model/Crosslinking/CrosslinkPeptideBuilder.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Crosslinking/CrosslinkSequenceParser.cs b/pwiz_tools/Skyline/Model/Crosslinking/CrosslinkSequenceParser.cs index 248b570769a..345d606b21b 100644 --- a/pwiz_tools/Skyline/Model/Crosslinking/CrosslinkSequenceParser.cs +++ b/pwiz_tools/Skyline/Model/Crosslinking/CrosslinkSequenceParser.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Crosslinking/CrosslinkSite.cs b/pwiz_tools/Skyline/Model/Crosslinking/CrosslinkSite.cs index b5496607376..6083c07b1fa 100644 --- a/pwiz_tools/Skyline/Model/Crosslinking/CrosslinkSite.cs +++ b/pwiz_tools/Skyline/Model/Crosslinking/CrosslinkSite.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Crosslinking/CrosslinkStructure.cs b/pwiz_tools/Skyline/Model/Crosslinking/CrosslinkStructure.cs index 550ac8e8cf4..83fee5a99db 100644 --- a/pwiz_tools/Skyline/Model/Crosslinking/CrosslinkStructure.cs +++ b/pwiz_tools/Skyline/Model/Crosslinking/CrosslinkStructure.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Crosslinking/CrosslinkedSequence.cs b/pwiz_tools/Skyline/Model/Crosslinking/CrosslinkedSequence.cs index e952b09022e..5309c7ce12f 100644 --- a/pwiz_tools/Skyline/Model/Crosslinking/CrosslinkedSequence.cs +++ b/pwiz_tools/Skyline/Model/Crosslinking/CrosslinkedSequence.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Crosslinking/CrosslinkerSettings.cs b/pwiz_tools/Skyline/Model/Crosslinking/CrosslinkerSettings.cs index ed6901b222e..06470c6a770 100644 --- a/pwiz_tools/Skyline/Model/Crosslinking/CrosslinkerSettings.cs +++ b/pwiz_tools/Skyline/Model/Crosslinking/CrosslinkerSettings.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Crosslinking/IonChain.cs b/pwiz_tools/Skyline/Model/Crosslinking/IonChain.cs index e7b665e41d1..20650dee40c 100644 --- a/pwiz_tools/Skyline/Model/Crosslinking/IonChain.cs +++ b/pwiz_tools/Skyline/Model/Crosslinking/IonChain.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Crosslinking/IonOrdinal.cs b/pwiz_tools/Skyline/Model/Crosslinking/IonOrdinal.cs index 4328b6d0457..b40afedd763 100644 --- a/pwiz_tools/Skyline/Model/Crosslinking/IonOrdinal.cs +++ b/pwiz_tools/Skyline/Model/Crosslinking/IonOrdinal.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Crosslinking/LegacyComplexFragmentIonName.cs b/pwiz_tools/Skyline/Model/Crosslinking/LegacyComplexFragmentIonName.cs index 0c57f7c75bc..08ce3b62e47 100644 --- a/pwiz_tools/Skyline/Model/Crosslinking/LegacyComplexFragmentIonName.cs +++ b/pwiz_tools/Skyline/Model/Crosslinking/LegacyComplexFragmentIonName.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Crosslinking/LegacyLinkedPeptide.cs b/pwiz_tools/Skyline/Model/Crosslinking/LegacyLinkedPeptide.cs index 4ddd65dd807..e462ffeb967 100644 --- a/pwiz_tools/Skyline/Model/Crosslinking/LegacyLinkedPeptide.cs +++ b/pwiz_tools/Skyline/Model/Crosslinking/LegacyLinkedPeptide.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Crosslinking/ModificationSite.cs b/pwiz_tools/Skyline/Model/Crosslinking/ModificationSite.cs index fea9d3c0491..ee6628402f5 100644 --- a/pwiz_tools/Skyline/Model/Crosslinking/ModificationSite.cs +++ b/pwiz_tools/Skyline/Model/Crosslinking/ModificationSite.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Crosslinking/NeutralFragmentIon.cs b/pwiz_tools/Skyline/Model/Crosslinking/NeutralFragmentIon.cs index 05d6588e9ac..14d2d1762dd 100644 --- a/pwiz_tools/Skyline/Model/Crosslinking/NeutralFragmentIon.cs +++ b/pwiz_tools/Skyline/Model/Crosslinking/NeutralFragmentIon.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Crosslinking/PeptideStructure.cs b/pwiz_tools/Skyline/Model/Crosslinking/PeptideStructure.cs index 11d536c40a0..2dd1b504d48 100644 --- a/pwiz_tools/Skyline/Model/Crosslinking/PeptideStructure.cs +++ b/pwiz_tools/Skyline/Model/Crosslinking/PeptideStructure.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Crosslinking/SimpleFragmentIon.cs b/pwiz_tools/Skyline/Model/Crosslinking/SimpleFragmentIon.cs index d908fd86098..546cb909dfd 100644 --- a/pwiz_tools/Skyline/Model/Crosslinking/SimpleFragmentIon.cs +++ b/pwiz_tools/Skyline/Model/Crosslinking/SimpleFragmentIon.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/CustomIon.cs b/pwiz_tools/Skyline/Model/CustomIon.cs index e75b18ea5d2..53e0ad775a3 100644 --- a/pwiz_tools/Skyline/Model/CustomIon.cs +++ b/pwiz_tools/Skyline/Model/CustomIon.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Max Horowitz-Gelb , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/CustomMolecule.cs b/pwiz_tools/Skyline/Model/CustomMolecule.cs index 680498e5400..f23dcf53ac9 100644 --- a/pwiz_tools/Skyline/Model/CustomMolecule.cs +++ b/pwiz_tools/Skyline/Model/CustomMolecule.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/AnnotationPropertyDescriptor.cs b/pwiz_tools/Skyline/Model/Databinding/AnnotationPropertyDescriptor.cs index 94cb14aa558..b3e0611bc7d 100644 --- a/pwiz_tools/Skyline/Model/Databinding/AnnotationPropertyDescriptor.cs +++ b/pwiz_tools/Skyline/Model/Databinding/AnnotationPropertyDescriptor.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/AnnotationTargetAttribute.cs b/pwiz_tools/Skyline/Model/Databinding/AnnotationTargetAttribute.cs index 9c66a94a82b..4d8f36a7e95 100644 --- a/pwiz_tools/Skyline/Model/Databinding/AnnotationTargetAttribute.cs +++ b/pwiz_tools/Skyline/Model/Databinding/AnnotationTargetAttribute.cs @@ -1,4 +1,4 @@ -using System; +using System; using pwiz.Skyline.Model.DocSettings; namespace pwiz.Skyline.Model.Databinding diff --git a/pwiz_tools/Skyline/Model/Databinding/AnnotationValueListDataGridViewColumn.cs b/pwiz_tools/Skyline/Model/Databinding/AnnotationValueListDataGridViewColumn.cs index cd67e782389..63304aeb94a 100644 --- a/pwiz_tools/Skyline/Model/Databinding/AnnotationValueListDataGridViewColumn.cs +++ b/pwiz_tools/Skyline/Model/Databinding/AnnotationValueListDataGridViewColumn.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/BoundComboBoxColumn.cs b/pwiz_tools/Skyline/Model/Databinding/BoundComboBoxColumn.cs index aa0b3a8335c..744b0f4c259 100644 --- a/pwiz_tools/Skyline/Model/Databinding/BoundComboBoxColumn.cs +++ b/pwiz_tools/Skyline/Model/Databinding/BoundComboBoxColumn.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/CachedValue.cs b/pwiz_tools/Skyline/Model/Databinding/CachedValue.cs index 761ecded418..f65b45ec8ca 100644 --- a/pwiz_tools/Skyline/Model/Databinding/CachedValue.cs +++ b/pwiz_tools/Skyline/Model/Databinding/CachedValue.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/CellLocator.cs b/pwiz_tools/Skyline/Model/Databinding/CellLocator.cs index f82fea74f14..bc82a50be8a 100644 --- a/pwiz_tools/Skyline/Model/Databinding/CellLocator.cs +++ b/pwiz_tools/Skyline/Model/Databinding/CellLocator.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/ChromDataCache.cs b/pwiz_tools/Skyline/Model/Databinding/ChromDataCache.cs index 53899df92f6..7b7c9f9e497 100644 --- a/pwiz_tools/Skyline/Model/Databinding/ChromDataCache.cs +++ b/pwiz_tools/Skyline/Model/Databinding/ChromDataCache.cs @@ -1,4 +1,4 @@ -using System; +using System; using pwiz.CommonMsData; using pwiz.Skyline.Model.Results; diff --git a/pwiz_tools/Skyline/Model/Databinding/Collections/FixedSkylineObjectList.cs b/pwiz_tools/Skyline/Model/Databinding/Collections/FixedSkylineObjectList.cs index 5df2cc91071..66d7e1293b3 100644 --- a/pwiz_tools/Skyline/Model/Databinding/Collections/FixedSkylineObjectList.cs +++ b/pwiz_tools/Skyline/Model/Databinding/Collections/FixedSkylineObjectList.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/Collections/MultiResultList.cs b/pwiz_tools/Skyline/Model/Databinding/Collections/MultiResultList.cs index 583b6083c2c..dfbcbe4ce53 100644 --- a/pwiz_tools/Skyline/Model/Databinding/Collections/MultiResultList.cs +++ b/pwiz_tools/Skyline/Model/Databinding/Collections/MultiResultList.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/Collections/NodeList.cs b/pwiz_tools/Skyline/Model/Databinding/Collections/NodeList.cs index 8495eb31a5b..b8be80a5a81 100644 --- a/pwiz_tools/Skyline/Model/Databinding/Collections/NodeList.cs +++ b/pwiz_tools/Skyline/Model/Databinding/Collections/NodeList.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/Collections/Peptides.cs b/pwiz_tools/Skyline/Model/Databinding/Collections/Peptides.cs index 7bcda779bd0..b2a58926cb2 100644 --- a/pwiz_tools/Skyline/Model/Databinding/Collections/Peptides.cs +++ b/pwiz_tools/Skyline/Model/Databinding/Collections/Peptides.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/Collections/Precursors.cs b/pwiz_tools/Skyline/Model/Databinding/Collections/Precursors.cs index 7bea2140b0a..34d86cde156 100644 --- a/pwiz_tools/Skyline/Model/Databinding/Collections/Precursors.cs +++ b/pwiz_tools/Skyline/Model/Databinding/Collections/Precursors.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/Collections/Proteins.cs b/pwiz_tools/Skyline/Model/Databinding/Collections/Proteins.cs index 191e316b53d..877a0fd4cd9 100644 --- a/pwiz_tools/Skyline/Model/Databinding/Collections/Proteins.cs +++ b/pwiz_tools/Skyline/Model/Databinding/Collections/Proteins.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/Collections/ReplicateList.cs b/pwiz_tools/Skyline/Model/Databinding/Collections/ReplicateList.cs index aaea2df6798..f0ef62fa43b 100644 --- a/pwiz_tools/Skyline/Model/Databinding/Collections/ReplicateList.cs +++ b/pwiz_tools/Skyline/Model/Databinding/Collections/ReplicateList.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/Collections/ResultFileKey.cs b/pwiz_tools/Skyline/Model/Databinding/Collections/ResultFileKey.cs index f9b272ff360..f971cb64290 100644 --- a/pwiz_tools/Skyline/Model/Databinding/Collections/ResultFileKey.cs +++ b/pwiz_tools/Skyline/Model/Databinding/Collections/ResultFileKey.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/Collections/ResultKey.cs b/pwiz_tools/Skyline/Model/Databinding/Collections/ResultKey.cs index 90eda0fccfe..1f56382a76c 100644 --- a/pwiz_tools/Skyline/Model/Databinding/Collections/ResultKey.cs +++ b/pwiz_tools/Skyline/Model/Databinding/Collections/ResultKey.cs @@ -1,4 +1,4 @@ -using System; +using System; using pwiz.Skyline.Model.Databinding.Entities; namespace pwiz.Skyline.Model.Databinding.Collections diff --git a/pwiz_tools/Skyline/Model/Databinding/Collections/ResultList.cs b/pwiz_tools/Skyline/Model/Databinding/Collections/ResultList.cs index 6950a8747a1..872c4edd406 100644 --- a/pwiz_tools/Skyline/Model/Databinding/Collections/ResultList.cs +++ b/pwiz_tools/Skyline/Model/Databinding/Collections/ResultList.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/Collections/SkylineObjectList.cs b/pwiz_tools/Skyline/Model/Databinding/Collections/SkylineObjectList.cs index 4c5a31c3400..c49fc8b09f4 100644 --- a/pwiz_tools/Skyline/Model/Databinding/Collections/SkylineObjectList.cs +++ b/pwiz_tools/Skyline/Model/Databinding/Collections/SkylineObjectList.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/Collections/Transitions.cs b/pwiz_tools/Skyline/Model/Databinding/Collections/Transitions.cs index ed91cb53712..2b8bf4bd175 100644 --- a/pwiz_tools/Skyline/Model/Databinding/Collections/Transitions.cs +++ b/pwiz_tools/Skyline/Model/Databinding/Collections/Transitions.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/DataGridId.cs b/pwiz_tools/Skyline/Model/Databinding/DataGridId.cs index af5aa55806d..60c88c53b0c 100644 --- a/pwiz_tools/Skyline/Model/Databinding/DataGridId.cs +++ b/pwiz_tools/Skyline/Model/Databinding/DataGridId.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/DatabindingResources.designer.cs b/pwiz_tools/Skyline/Model/Databinding/DatabindingResources.designer.cs index 7943bd842d6..f877c29531c 100644 --- a/pwiz_tools/Skyline/Model/Databinding/DatabindingResources.designer.cs +++ b/pwiz_tools/Skyline/Model/Databinding/DatabindingResources.designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Model/Databinding/DocumentViewTransformer.cs b/pwiz_tools/Skyline/Model/Databinding/DocumentViewTransformer.cs index 47b1707c3f5..94193190e95 100644 --- a/pwiz_tools/Skyline/Model/Databinding/DocumentViewTransformer.cs +++ b/pwiz_tools/Skyline/Model/Databinding/DocumentViewTransformer.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections.Generic; using System.Linq; using pwiz.Common.Collections; diff --git a/pwiz_tools/Skyline/Model/Databinding/EditDescription.cs b/pwiz_tools/Skyline/Model/Databinding/EditDescription.cs index fc7427335d2..ac048efcc4c 100644 --- a/pwiz_tools/Skyline/Model/Databinding/EditDescription.cs +++ b/pwiz_tools/Skyline/Model/Databinding/EditDescription.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/Entities/CalibrationCurveMetrics.cs b/pwiz_tools/Skyline/Model/Databinding/Entities/CalibrationCurveMetrics.cs index 3b16a3ed9b1..c393ec82f67 100644 --- a/pwiz_tools/Skyline/Model/Databinding/Entities/CalibrationCurveMetrics.cs +++ b/pwiz_tools/Skyline/Model/Databinding/Entities/CalibrationCurveMetrics.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/Entities/CandidatePeakGroup.cs b/pwiz_tools/Skyline/Model/Databinding/Entities/CandidatePeakGroup.cs index f42710eff9d..999c9174008 100644 --- a/pwiz_tools/Skyline/Model/Databinding/Entities/CandidatePeakGroup.cs +++ b/pwiz_tools/Skyline/Model/Databinding/Entities/CandidatePeakGroup.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/Entities/Chromatogram.cs b/pwiz_tools/Skyline/Model/Databinding/Entities/Chromatogram.cs index cc869ce8185..397986284ba 100644 --- a/pwiz_tools/Skyline/Model/Databinding/Entities/Chromatogram.cs +++ b/pwiz_tools/Skyline/Model/Databinding/Entities/Chromatogram.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/Entities/ChromatogramGroup.cs b/pwiz_tools/Skyline/Model/Databinding/Entities/ChromatogramGroup.cs index 6672ee04764..376d6655ace 100644 --- a/pwiz_tools/Skyline/Model/Databinding/Entities/ChromatogramGroup.cs +++ b/pwiz_tools/Skyline/Model/Databinding/Entities/ChromatogramGroup.cs @@ -1,4 +1,4 @@ -using System; +using System; using pwiz.Skyline.Model.Results; namespace pwiz.Skyline.Model.Databinding.Entities diff --git a/pwiz_tools/Skyline/Model/Databinding/Entities/ColumnCaptions.Designer.cs b/pwiz_tools/Skyline/Model/Databinding/Entities/ColumnCaptions.Designer.cs index fee660d52b9..003cad2e672 100644 --- a/pwiz_tools/Skyline/Model/Databinding/Entities/ColumnCaptions.Designer.cs +++ b/pwiz_tools/Skyline/Model/Databinding/Entities/ColumnCaptions.Designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Model/Databinding/Entities/ColumnToolTips.Designer.cs b/pwiz_tools/Skyline/Model/Databinding/Entities/ColumnToolTips.Designer.cs index da8c5ef74cc..022bd0f82ca 100644 --- a/pwiz_tools/Skyline/Model/Databinding/Entities/ColumnToolTips.Designer.cs +++ b/pwiz_tools/Skyline/Model/Databinding/Entities/ColumnToolTips.Designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Model/Databinding/Entities/IonMobilityObject.cs b/pwiz_tools/Skyline/Model/Databinding/Entities/IonMobilityObject.cs index 8d83a174c55..59650802d32 100644 --- a/pwiz_tools/Skyline/Model/Databinding/Entities/IonMobilityObject.cs +++ b/pwiz_tools/Skyline/Model/Databinding/Entities/IonMobilityObject.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/Entities/MultiResult.cs b/pwiz_tools/Skyline/Model/Databinding/Entities/MultiResult.cs index 4ec983447a8..50e1cb3ac46 100644 --- a/pwiz_tools/Skyline/Model/Databinding/Entities/MultiResult.cs +++ b/pwiz_tools/Skyline/Model/Databinding/Entities/MultiResult.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/Entities/PeakGroupScore.cs b/pwiz_tools/Skyline/Model/Databinding/Entities/PeakGroupScore.cs index fb31b1643b4..da3b6ed14ba 100644 --- a/pwiz_tools/Skyline/Model/Databinding/Entities/PeakGroupScore.cs +++ b/pwiz_tools/Skyline/Model/Databinding/Entities/PeakGroupScore.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/Entities/Peptide.cs b/pwiz_tools/Skyline/Model/Databinding/Entities/Peptide.cs index 93488e51ad2..2df084baaaf 100644 --- a/pwiz_tools/Skyline/Model/Databinding/Entities/Peptide.cs +++ b/pwiz_tools/Skyline/Model/Databinding/Entities/Peptide.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * @@ -19,8 +19,10 @@ using System; using System.Collections.Generic; +using System.ComponentModel; using System.IO; using System.Linq; +using System.Resources; using pwiz.Common.Collections; using pwiz.Common.DataBinding.Attributes; using pwiz.Common.DataBinding; @@ -50,6 +52,14 @@ public Peptide(SkylineDataSchema dataSchema, IdentityPath identityPath) { } + #region PropertyGrid Support + + public override ResourceManager GetResourceManager() => PropertyGridDocNodeResources.ResourceManager; + + protected override PropertyDescriptor GetRootAliasProperty() => TypeDescriptor.GetProperties(GetType())[nameof(Sequence)]; + + #endregion + [OneToMany(ForeignKey = "Peptide")] [HideWhen(AncestorOfType = typeof(FoldChangeBindingSource.FoldChangeRow))] public IList Precursors diff --git a/pwiz_tools/Skyline/Model/Databinding/Entities/PeptideResult.cs b/pwiz_tools/Skyline/Model/Databinding/Entities/PeptideResult.cs index bb0130bdf24..3371138f783 100644 --- a/pwiz_tools/Skyline/Model/Databinding/Entities/PeptideResult.cs +++ b/pwiz_tools/Skyline/Model/Databinding/Entities/PeptideResult.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/Entities/Precursor.cs b/pwiz_tools/Skyline/Model/Databinding/Entities/Precursor.cs index 464430c6d5d..e4fe2d2445e 100644 --- a/pwiz_tools/Skyline/Model/Databinding/Entities/Precursor.cs +++ b/pwiz_tools/Skyline/Model/Databinding/Entities/Precursor.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/Entities/PrecursorResult.cs b/pwiz_tools/Skyline/Model/Databinding/Entities/PrecursorResult.cs index f6cee062346..3b39248f613 100644 --- a/pwiz_tools/Skyline/Model/Databinding/Entities/PrecursorResult.cs +++ b/pwiz_tools/Skyline/Model/Databinding/Entities/PrecursorResult.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/Entities/Protein.cs b/pwiz_tools/Skyline/Model/Databinding/Entities/Protein.cs index 1b3f248847f..e0b4c3b7b46 100644 --- a/pwiz_tools/Skyline/Model/Databinding/Entities/Protein.cs +++ b/pwiz_tools/Skyline/Model/Databinding/Entities/Protein.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/Entities/ProteinResult.cs b/pwiz_tools/Skyline/Model/Databinding/Entities/ProteinResult.cs index dddd4129f2b..98186a5f802 100644 --- a/pwiz_tools/Skyline/Model/Databinding/Entities/ProteinResult.cs +++ b/pwiz_tools/Skyline/Model/Databinding/Entities/ProteinResult.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/Entities/Replicate.cs b/pwiz_tools/Skyline/Model/Databinding/Entities/Replicate.cs index f5b8e1085f8..54608ca0ad6 100644 --- a/pwiz_tools/Skyline/Model/Databinding/Entities/Replicate.cs +++ b/pwiz_tools/Skyline/Model/Databinding/Entities/Replicate.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * @@ -21,6 +21,7 @@ using System.Collections.Generic; using System.ComponentModel; using System.Linq; +using System.Resources; using pwiz.Common.DataBinding; using pwiz.Common.DataBinding.Attributes; using pwiz.CommonMsData; @@ -28,6 +29,7 @@ using pwiz.Skyline.Model.DocSettings.AbsoluteQuantification; using pwiz.Skyline.Model.ElementLocators; using pwiz.Skyline.Model.Results; +using pwiz.Skyline.Model.Files; namespace pwiz.Skyline.Model.Databinding.Entities { @@ -43,6 +45,14 @@ public Replicate(SkylineDataSchema dataSchema, int replicateIndex) : base(dataSc _chromatogramSet = CachedValue.Create(DataSchema, FindChromatogramSet); } + #region PropertyGrid Support + + public override ResourceManager GetResourceManager() => PropertyGridFileNodeResources.ResourceManager; + + protected override PropertyDescriptor GetRootAliasProperty() => TypeDescriptor.GetProperties(GetType())[nameof(Name)]; + + #endregion + [Browsable(false)] public int ReplicateIndex { get; private set; } diff --git a/pwiz_tools/Skyline/Model/Databinding/Entities/Result.cs b/pwiz_tools/Skyline/Model/Databinding/Entities/Result.cs index c8217a44a03..573a32dcfe1 100644 --- a/pwiz_tools/Skyline/Model/Databinding/Entities/Result.cs +++ b/pwiz_tools/Skyline/Model/Databinding/Entities/Result.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/Entities/ResultFile.cs b/pwiz_tools/Skyline/Model/Databinding/Entities/ResultFile.cs index 79871d40658..b1120c37044 100644 --- a/pwiz_tools/Skyline/Model/Databinding/Entities/ResultFile.cs +++ b/pwiz_tools/Skyline/Model/Databinding/Entities/ResultFile.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/Entities/SkylineDocNode.cs b/pwiz_tools/Skyline/Model/Databinding/Entities/SkylineDocNode.cs index abe9f4b9671..e415adc58f1 100644 --- a/pwiz_tools/Skyline/Model/Databinding/Entities/SkylineDocNode.cs +++ b/pwiz_tools/Skyline/Model/Databinding/Entities/SkylineDocNode.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * @@ -193,6 +193,7 @@ public override void SetAnnotation(AnnotationDef annotationDef, object value) ChangeDocNode(EditDescription.SetAnnotation(annotationDef, value), docNode => (TDocNode) docNode.ChangeAnnotations(docNode.Annotations.ChangeAnnotation(annotationDef, value))); } + public override string ToString() { return DocNode.ToString(); diff --git a/pwiz_tools/Skyline/Model/Databinding/Entities/SkylineDocument.cs b/pwiz_tools/Skyline/Model/Databinding/Entities/SkylineDocument.cs index 9778c71695a..0c74ded05c9 100644 --- a/pwiz_tools/Skyline/Model/Databinding/Entities/SkylineDocument.cs +++ b/pwiz_tools/Skyline/Model/Databinding/Entities/SkylineDocument.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/Entities/SkylineObject.cs b/pwiz_tools/Skyline/Model/Databinding/Entities/SkylineObject.cs index a94cda1aa9d..d0c396693d1 100644 --- a/pwiz_tools/Skyline/Model/Databinding/Entities/SkylineObject.cs +++ b/pwiz_tools/Skyline/Model/Databinding/Entities/SkylineObject.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * @@ -19,10 +19,14 @@ using System; using System.ComponentModel; +using System.Linq; +using System.Resources; using pwiz.Common.DataBinding; using pwiz.Common.SystemUtil; +using pwiz.Skyline.Controls.Databinding; using pwiz.Skyline.Model.DocSettings; using pwiz.Skyline.Model.ElementLocators; +using AttributeCollection = System.ComponentModel.AttributeCollection; namespace pwiz.Skyline.Model.Databinding.Entities { @@ -82,7 +86,7 @@ protected EditDescription EditColumnDescription(string propertyName, object valu /// which holds onto a reference to the /// and returns it in . /// - public class RootSkylineObject : SkylineObject + public class RootSkylineObject : SkylineObject, ICustomTypeDescriptor { private SkylineDataSchema _dataSchema; public RootSkylineObject(SkylineDataSchema dataSchema) @@ -94,5 +98,95 @@ protected override SkylineDataSchema GetDataSchema() { return _dataSchema; } + + #region PropertyGrid Support + + public virtual ResourceManager GetResourceManager() => null; + + protected virtual bool PropertyFilter(PropertyDescriptor prop) => + prop != null; + + protected virtual PropertyDescriptor PropertyTransform(PropertyDescriptor prop) + { + var transformed = new PropertyGridPropertyDescriptor(prop, GetResourceManager()); + if (prop is AnnotationPropertyDescriptor annotationProperty) + // annotations need invariant display name as they are user-defined and have no localized resource + transformed.SetDisplayName(annotationProperty.DisplayName); + else + // for non-annotation properties, set category to name of this object + transformed.SetCategory(GetType().Name); + return transformed; + } + + // Override to provide a property to use as the alias for the root object, e.g. Sequence for Peptide + protected virtual PropertyDescriptor GetRootAliasProperty() => null; + + // assumes path is depth 1 or null (for root) + private PropertyDescriptor GetPropertyDescriptorFromPath(PropertyPath path) + { + // if root path used as property, must defer to object to tell what to display. + // For example, Peptide uses Sequence as its "root" property and is displayed as "Peptide" + if (path.Name == null && GetRootAliasProperty() != null) + return GetRootAliasProperty(); + + return TypeDescriptor.GetProperties(GetType())[path.Name ?? string.Empty]; + } + + // version of GetProperties that simply collects all properties on the object and does the standard transform. + // used for data objects not present in the document grid, where GetDefaultColumns would return an empty list. + protected PropertyDescriptorCollection GetPropertiesReflective() + { + var baseProps = TypeDescriptor.GetProperties(GetType()); + var processedProps = from PropertyDescriptor prop in baseProps + where PropertyFilter(prop) + select PropertyTransform(prop); + + return new PropertyDescriptorCollection(processedProps.ToArray()); + } + + #endregion + + #region ICustomTypeDescriptor Implementation + + public virtual PropertyDescriptorCollection GetProperties() + { + // Get default displayed props + var propertyPaths = new BuiltInReports(_dataSchema.Document).GetDefaultColumns(GetType()); + if (propertyPaths == null) return new PropertyDescriptorCollection(new PropertyDescriptor[]{}); + var allProps = propertyPaths.Select(GetPropertyDescriptorFromPath); + var filteredProps = allProps.Where(PropertyFilter).ToList(); + + // Add applicable annotation props + var annotationProps = _dataSchema.GetAnnotations(GetType()).ToList(); + filteredProps.AddRange(annotationProps); + + // Convert to PropertyGridPropertyDescriptor + var transformedProps = filteredProps.Select(PropertyTransform); + return new PropertyDescriptorCollection(transformedProps.ToArray()); + } + + public PropertyDescriptorCollection GetProperties(Attribute[] attributes) => GetProperties(); + + public string GetClassName() => TypeDescriptor.GetClassName(this, true); + + public AttributeCollection GetAttributes() => TypeDescriptor.GetAttributes(this, true); + + public string GetComponentName() => TypeDescriptor.GetComponentName(this, true); + + public TypeConverter GetConverter() => TypeDescriptor.GetConverter(this, true); + + public EventDescriptor GetDefaultEvent() => TypeDescriptor.GetDefaultEvent(this, true); + + public PropertyDescriptor GetDefaultProperty() => TypeDescriptor.GetDefaultProperty(this, true); + + public object GetEditor(Type editorBaseType) => TypeDescriptor.GetEditor(this, editorBaseType, true); + + public EventDescriptorCollection GetEvents(Attribute[] attributes) => TypeDescriptor.GetEvents(this, attributes, true); + + public EventDescriptorCollection GetEvents() => TypeDescriptor.GetEvents(this, true); + + public object GetPropertyOwner(PropertyDescriptor pd) => this; + + #endregion } } diff --git a/pwiz_tools/Skyline/Model/Databinding/Entities/SpectralLibrary.cs b/pwiz_tools/Skyline/Model/Databinding/Entities/SpectralLibrary.cs new file mode 100644 index 00000000000..0d07ecd7d2e --- /dev/null +++ b/pwiz_tools/Skyline/Model/Databinding/Entities/SpectralLibrary.cs @@ -0,0 +1,92 @@ +/* + * Original author: Aaron Banse , + * MacCoss Lab, Department of Genome Sciences, UW + * + * Copyright 2025 University of Washington - Seattle, WA + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ + +using System.ComponentModel; +using System.Linq; +using System.Resources; +using pwiz.Skyline.Model.Files; + +namespace pwiz.Skyline.Model.Databinding.Entities +{ + public class SpectralLibrary : RootSkylineObject + { + public SpectralLibrary(SkylineDataSchema dataSchema, string name, string filePath, string localFilePath) : base(dataSchema) + { + var library = dataSchema.Document.Settings.PeptideSettings.Libraries.GetLibrary(name); + var libSpec = library.CreateSpec(filePath); + var libDetails = library.LibraryDetails; + var libDataFiles = libDetails.DataFiles.ToList(); + + Name = name; + LocalFilePath = localFilePath; + LibraryType = libSpec.GetLibraryTypeName(); + FilePath = libSpec.FilePath; + SpectrumCount = libDetails.SpectrumCount; + UniquePeptideCount = libDetails.UniquePeptideCount; + Id = libDetails.Id; + Revision = libDetails.Revision; + Version = libDetails.Version; + DataFiles = libDataFiles.Count; + if (DataFiles > 0) + TotalPsmCount = libDetails.TotalPsmCount; + + // if all data files have the same score type and threshold, use those values, otherwise null + ScoreType = null; + ScoreThreshold = null; + foreach (var kvp in libDataFiles.Where(sourceFileDetail => sourceFileDetail.ScoreThresholds.Any()) + .SelectMany(sourceFileDetail => sourceFileDetail.ScoreThresholds)) + { + if (ScoreType == null) + { + ScoreType = kvp.Key.ToString(); + ScoreThreshold = kvp.Value; + } + else if (ScoreType != kvp.Key.ToString() || ScoreThreshold != kvp.Value) + { + ScoreType = null; + ScoreThreshold = null; + break; + } + } + } + + public string Name { get; } + public int DataFiles { get; } + public string LibraryType { get; } + public string FilePath { get; } + public string LocalFilePath { get; } + public int SpectrumCount { get; } + public int? TotalPsmCount { get; } + public int UniquePeptideCount { get; } + public string Id { get; } + public string Revision { get; } + public string Version { get; } + public string ScoreType { get; } + public double? ScoreThreshold { get; } + + public override ResourceManager GetResourceManager() => PropertyGridFileNodeResources.ResourceManager; + + public override PropertyDescriptorCollection GetProperties() => GetPropertiesReflective(); + + protected override bool PropertyFilter(PropertyDescriptor prop) + { + return base.PropertyFilter(prop) && prop.GetValue(this) != null; + } + } +} diff --git a/pwiz_tools/Skyline/Model/Databinding/Entities/SummaryValue.cs b/pwiz_tools/Skyline/Model/Databinding/Entities/SummaryValue.cs index 424476b5919..1b1ea0761be 100644 --- a/pwiz_tools/Skyline/Model/Databinding/Entities/SummaryValue.cs +++ b/pwiz_tools/Skyline/Model/Databinding/Entities/SummaryValue.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/Entities/Transition.cs b/pwiz_tools/Skyline/Model/Databinding/Entities/Transition.cs index 236e1972e85..d678ec47bd8 100644 --- a/pwiz_tools/Skyline/Model/Databinding/Entities/Transition.cs +++ b/pwiz_tools/Skyline/Model/Databinding/Entities/Transition.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * @@ -19,8 +19,10 @@ using System; using System.Collections.Generic; +using System.ComponentModel; using System.Globalization; using System.Linq; +using System.Resources; using pwiz.Common.Chemistry; using pwiz.Common.DataBinding.Attributes; using pwiz.Skyline.Model.Crosslinking; @@ -45,6 +47,17 @@ public Transition(SkylineDataSchema dataSchema, IdentityPath identityPath) : bas _results = CachedValue.Create(DataSchema, MakeResults); } + #region PropertyGrid Support + + public override ResourceManager GetResourceManager() => PropertyGridDocNodeResources.ResourceManager; + + protected override PropertyDescriptor GetRootAliasProperty() => TypeDescriptor.GetProperties(GetType())[nameof(Name)]; + + #endregion + + public string Name => DocNode.Transition.ToString(); + + [HideWhen(AncestorOfType = typeof(Precursor))] public Precursor Precursor { diff --git a/pwiz_tools/Skyline/Model/Databinding/Entities/TransitionResult.cs b/pwiz_tools/Skyline/Model/Databinding/Entities/TransitionResult.cs index 875b1960533..f23435fb609 100644 --- a/pwiz_tools/Skyline/Model/Databinding/Entities/TransitionResult.cs +++ b/pwiz_tools/Skyline/Model/Databinding/Entities/TransitionResult.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/FeaturePropertyDescriptor.cs b/pwiz_tools/Skyline/Model/Databinding/FeaturePropertyDescriptor.cs index 1ae4af7d714..a4eec3a5a9b 100644 --- a/pwiz_tools/Skyline/Model/Databinding/FeaturePropertyDescriptor.cs +++ b/pwiz_tools/Skyline/Model/Databinding/FeaturePropertyDescriptor.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/FormatSuggestion.cs b/pwiz_tools/Skyline/Model/Databinding/FormatSuggestion.cs index 71375b3df4d..8b68225a23f 100644 --- a/pwiz_tools/Skyline/Model/Databinding/FormatSuggestion.cs +++ b/pwiz_tools/Skyline/Model/Databinding/FormatSuggestion.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/IDocumentChangeListener.cs b/pwiz_tools/Skyline/Model/Databinding/IDocumentChangeListener.cs index 48889029628..1bef43446b7 100644 --- a/pwiz_tools/Skyline/Model/Databinding/IDocumentChangeListener.cs +++ b/pwiz_tools/Skyline/Model/Databinding/IDocumentChangeListener.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/ImportableAttribute.cs b/pwiz_tools/Skyline/Model/Databinding/ImportableAttribute.cs index 0f28a33bada..258da960649 100644 --- a/pwiz_tools/Skyline/Model/Databinding/ImportableAttribute.cs +++ b/pwiz_tools/Skyline/Model/Databinding/ImportableAttribute.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Globalization; namespace pwiz.Skyline.Model.Databinding diff --git a/pwiz_tools/Skyline/Model/Databinding/ListColumnPropertyDescriptor.cs b/pwiz_tools/Skyline/Model/Databinding/ListColumnPropertyDescriptor.cs index b512b569deb..c5d784dda64 100644 --- a/pwiz_tools/Skyline/Model/Databinding/ListColumnPropertyDescriptor.cs +++ b/pwiz_tools/Skyline/Model/Databinding/ListColumnPropertyDescriptor.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/ListLookupDataGridViewColumn.cs b/pwiz_tools/Skyline/Model/Databinding/ListLookupDataGridViewColumn.cs index 355ec361445..c9904e0d6ac 100644 --- a/pwiz_tools/Skyline/Model/Databinding/ListLookupDataGridViewColumn.cs +++ b/pwiz_tools/Skyline/Model/Databinding/ListLookupDataGridViewColumn.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/ListLookupPropertyDescriptor.cs b/pwiz_tools/Skyline/Model/Databinding/ListLookupPropertyDescriptor.cs index 2ca14a13d52..f17f027b4f7 100644 --- a/pwiz_tools/Skyline/Model/Databinding/ListLookupPropertyDescriptor.cs +++ b/pwiz_tools/Skyline/Model/Databinding/ListLookupPropertyDescriptor.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/NormalizationMethodDataGridViewColumn.cs b/pwiz_tools/Skyline/Model/Databinding/NormalizationMethodDataGridViewColumn.cs index ef4789fcf9d..29df74beeb9 100644 --- a/pwiz_tools/Skyline/Model/Databinding/NormalizationMethodDataGridViewColumn.cs +++ b/pwiz_tools/Skyline/Model/Databinding/NormalizationMethodDataGridViewColumn.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/ProteomicDisplayNameAttribute.cs b/pwiz_tools/Skyline/Model/Databinding/ProteomicDisplayNameAttribute.cs index a38b5057a16..de466f74012 100644 --- a/pwiz_tools/Skyline/Model/Databinding/ProteomicDisplayNameAttribute.cs +++ b/pwiz_tools/Skyline/Model/Databinding/ProteomicDisplayNameAttribute.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/RatioPropertyDescriptor.cs b/pwiz_tools/Skyline/Model/Databinding/RatioPropertyDescriptor.cs index 82eb1b71151..2217dcf31a0 100644 --- a/pwiz_tools/Skyline/Model/Databinding/RatioPropertyDescriptor.cs +++ b/pwiz_tools/Skyline/Model/Databinding/RatioPropertyDescriptor.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/ReplicateSummaries.cs b/pwiz_tools/Skyline/Model/Databinding/ReplicateSummaries.cs index 0880f315180..53f112e7cfa 100644 --- a/pwiz_tools/Skyline/Model/Databinding/ReplicateSummaries.cs +++ b/pwiz_tools/Skyline/Model/Databinding/ReplicateSummaries.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/ReportOrViewSpec.cs b/pwiz_tools/Skyline/Model/Databinding/ReportOrViewSpec.cs index e9b7e7c4feb..3a514f4adf2 100644 --- a/pwiz_tools/Skyline/Model/Databinding/ReportOrViewSpec.cs +++ b/pwiz_tools/Skyline/Model/Databinding/ReportOrViewSpec.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/ReportSharing.cs b/pwiz_tools/Skyline/Model/Databinding/ReportSharing.cs index 9ac88a37fa0..1f8e123eca5 100644 --- a/pwiz_tools/Skyline/Model/Databinding/ReportSharing.cs +++ b/pwiz_tools/Skyline/Model/Databinding/ReportSharing.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/ReportSpecConverter.cs b/pwiz_tools/Skyline/Model/Databinding/ReportSpecConverter.cs index ab4a70de735..3dcf5bf7001 100644 --- a/pwiz_tools/Skyline/Model/Databinding/ReportSpecConverter.cs +++ b/pwiz_tools/Skyline/Model/Databinding/ReportSpecConverter.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/ResultsGridViewContext.cs b/pwiz_tools/Skyline/Model/Databinding/ResultsGridViewContext.cs index c0cf2a1ef7a..0cfdb6a871f 100644 --- a/pwiz_tools/Skyline/Model/Databinding/ResultsGridViewContext.cs +++ b/pwiz_tools/Skyline/Model/Databinding/ResultsGridViewContext.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/SampleTypeDataGridViewColumn.cs b/pwiz_tools/Skyline/Model/Databinding/SampleTypeDataGridViewColumn.cs index 306405d2948..8fce95f1507 100644 --- a/pwiz_tools/Skyline/Model/Databinding/SampleTypeDataGridViewColumn.cs +++ b/pwiz_tools/Skyline/Model/Databinding/SampleTypeDataGridViewColumn.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections.Generic; using System.Windows.Forms; using pwiz.Skyline.Model.DocSettings.AbsoluteQuantification; diff --git a/pwiz_tools/Skyline/Model/Databinding/SkylineDataSchema.cs b/pwiz_tools/Skyline/Model/Databinding/SkylineDataSchema.cs index 61d84c9ebdb..09238948f71 100644 --- a/pwiz_tools/Skyline/Model/Databinding/SkylineDataSchema.cs +++ b/pwiz_tools/Skyline/Model/Databinding/SkylineDataSchema.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/SkylineRowSource.cs b/pwiz_tools/Skyline/Model/Databinding/SkylineRowSource.cs index 260128a0af6..ad7d2d4936e 100644 --- a/pwiz_tools/Skyline/Model/Databinding/SkylineRowSource.cs +++ b/pwiz_tools/Skyline/Model/Databinding/SkylineRowSource.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/StandardTypeDataGridViewColumn.cs b/pwiz_tools/Skyline/Model/Databinding/StandardTypeDataGridViewColumn.cs index f2074fc243d..799743db858 100644 --- a/pwiz_tools/Skyline/Model/Databinding/StandardTypeDataGridViewColumn.cs +++ b/pwiz_tools/Skyline/Model/Databinding/StandardTypeDataGridViewColumn.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Databinding/SurrogateStandardDataGridViewColumn.cs b/pwiz_tools/Skyline/Model/Databinding/SurrogateStandardDataGridViewColumn.cs index 4ad708da8cc..50dc007e903 100644 --- a/pwiz_tools/Skyline/Model/Databinding/SurrogateStandardDataGridViewColumn.cs +++ b/pwiz_tools/Skyline/Model/Databinding/SurrogateStandardDataGridViewColumn.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DdaSearch/CometSearchEngine.cs b/pwiz_tools/Skyline/Model/DdaSearch/CometSearchEngine.cs index 0648a2de819..d09b7d4c8ba 100644 --- a/pwiz_tools/Skyline/Model/DdaSearch/CometSearchEngine.cs +++ b/pwiz_tools/Skyline/Model/DdaSearch/CometSearchEngine.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2024 University of Washington - Seattle, WA diff --git a/pwiz_tools/Skyline/Model/DdaSearch/DdaSearchResources.designer.cs b/pwiz_tools/Skyline/Model/DdaSearch/DdaSearchResources.designer.cs index cc1efc4cd33..57ed308fdda 100644 --- a/pwiz_tools/Skyline/Model/DdaSearch/DdaSearchResources.designer.cs +++ b/pwiz_tools/Skyline/Model/DdaSearch/DdaSearchResources.designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Model/DdaSearch/HardklorSearchEngine.cs b/pwiz_tools/Skyline/Model/DdaSearch/HardklorSearchEngine.cs index e1faabd8413..1cb528346c8 100644 --- a/pwiz_tools/Skyline/Model/DdaSearch/HardklorSearchEngine.cs +++ b/pwiz_tools/Skyline/Model/DdaSearch/HardklorSearchEngine.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt * * Copyright 2022 University of Washington - Seattle, WA diff --git a/pwiz_tools/Skyline/Model/DdaSearch/MSAmandaSearchSettings.cs b/pwiz_tools/Skyline/Model/DdaSearch/MSAmandaSearchSettings.cs index d937727aa9a..ef4425849d3 100644 --- a/pwiz_tools/Skyline/Model/DdaSearch/MSAmandaSearchSettings.cs +++ b/pwiz_tools/Skyline/Model/DdaSearch/MSAmandaSearchSettings.cs @@ -1,4 +1,4 @@ - + namespace pwiz.Skyline.Model.DdaSearch { public class MSAmandaSearchSettings diff --git a/pwiz_tools/Skyline/Model/DdaSearch/MSAmandaSearchWrapper.cs b/pwiz_tools/Skyline/Model/DdaSearch/MSAmandaSearchWrapper.cs index 2bb0031a4f3..2f46cd9e73a 100644 --- a/pwiz_tools/Skyline/Model/DdaSearch/MSAmandaSearchWrapper.cs +++ b/pwiz_tools/Skyline/Model/DdaSearch/MSAmandaSearchWrapper.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Viktoria Dorfer , * Bioinformatics Research Group, University of Applied Sciences Upper Austria * diff --git a/pwiz_tools/Skyline/Model/DdaSearch/MSAmandaSpectrumParser.cs b/pwiz_tools/Skyline/Model/DdaSearch/MSAmandaSpectrumParser.cs index 4cdba4a3c66..eae45ceed48 100644 --- a/pwiz_tools/Skyline/Model/DdaSearch/MSAmandaSpectrumParser.cs +++ b/pwiz_tools/Skyline/Model/DdaSearch/MSAmandaSpectrumParser.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Viktoria Dorfer , * Bioinformatics Research Group, University of Applied Sciences Upper Austria * diff --git a/pwiz_tools/Skyline/Model/DdaSearch/MsFraggerSearchEngine.cs b/pwiz_tools/Skyline/Model/DdaSearch/MsFraggerSearchEngine.cs index b4c4045d239..96ef42c3d0d 100644 --- a/pwiz_tools/Skyline/Model/DdaSearch/MsFraggerSearchEngine.cs +++ b/pwiz_tools/Skyline/Model/DdaSearch/MsFraggerSearchEngine.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2021 University of Washington - Seattle, WA diff --git a/pwiz_tools/Skyline/Model/DdaSearch/MsconvertDdaConverter.cs b/pwiz_tools/Skyline/Model/DdaSearch/MsconvertDdaConverter.cs index 422743ee901..b14693bbf8f 100644 --- a/pwiz_tools/Skyline/Model/DdaSearch/MsconvertDdaConverter.cs +++ b/pwiz_tools/Skyline/Model/DdaSearch/MsconvertDdaConverter.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2021 University of Washington - Seattle, WA diff --git a/pwiz_tools/Skyline/Model/DdaSearch/MsgfPlusSearchEngine.cs b/pwiz_tools/Skyline/Model/DdaSearch/MsgfPlusSearchEngine.cs index 726160cec9f..0c1848b5f5e 100644 --- a/pwiz_tools/Skyline/Model/DdaSearch/MsgfPlusSearchEngine.cs +++ b/pwiz_tools/Skyline/Model/DdaSearch/MsgfPlusSearchEngine.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2020 University of Washington - Seattle, WA diff --git a/pwiz_tools/Skyline/Model/DdaSearch/TideSearchEngine.cs b/pwiz_tools/Skyline/Model/DdaSearch/TideSearchEngine.cs index 40d6298afaf..a81ddf75f9d 100644 --- a/pwiz_tools/Skyline/Model/DdaSearch/TideSearchEngine.cs +++ b/pwiz_tools/Skyline/Model/DdaSearch/TideSearchEngine.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2024 University of Washington - Seattle, WA diff --git a/pwiz_tools/Skyline/Model/DecoyGenerator.cs b/pwiz_tools/Skyline/Model/DecoyGenerator.cs index 80a85e3c015..ce41d807bca 100644 --- a/pwiz_tools/Skyline/Model/DecoyGenerator.cs +++ b/pwiz_tools/Skyline/Model/DecoyGenerator.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DiaUmpireDdaConverter.cs b/pwiz_tools/Skyline/Model/DiaUmpireDdaConverter.cs index c33b647b5f2..602bbb612a5 100644 --- a/pwiz_tools/Skyline/Model/DiaUmpireDdaConverter.cs +++ b/pwiz_tools/Skyline/Model/DiaUmpireDdaConverter.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2021 University of Washington - Seattle, WA diff --git a/pwiz_tools/Skyline/Model/DisplayModificationOption.cs b/pwiz_tools/Skyline/Model/DisplayModificationOption.cs index f6f121d52f1..9d4cb27aec2 100644 --- a/pwiz_tools/Skyline/Model/DisplayModificationOption.cs +++ b/pwiz_tools/Skyline/Model/DisplayModificationOption.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DllFinder.cs b/pwiz_tools/Skyline/Model/DllFinder.cs index 1226923418c..a0e674b97bb 100644 --- a/pwiz_tools/Skyline/Model/DllFinder.cs +++ b/pwiz_tools/Skyline/Model/DllFinder.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocNode.cs b/pwiz_tools/Skyline/Model/DocNode.cs index 27d687d2518..2099bb40497 100644 --- a/pwiz_tools/Skyline/Model/DocNode.cs +++ b/pwiz_tools/Skyline/Model/DocNode.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * @@ -117,7 +117,7 @@ public DocNode ChangeReplacedId(Identity id) /// New instance public DocNode ChangeAnnotations(Annotations annotations) { - return ChangeProp(ImClone(this), im => im.Annotations = annotations); + return ChangeProp(ImClone(this), im => im.Annotations = annotations); } /// diff --git a/pwiz_tools/Skyline/Model/DocNodeChildren.cs b/pwiz_tools/Skyline/Model/DocNodeChildren.cs index a63e2123c68..222dce4ebd2 100644 --- a/pwiz_tools/Skyline/Model/DocNodeChildren.cs +++ b/pwiz_tools/Skyline/Model/DocNodeChildren.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections; using System.Collections.Generic; using pwiz.Common.Collections; diff --git a/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/BilinearRegressionFit.cs b/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/BilinearRegressionFit.cs index 466413ed2ca..27cc79d3eac 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/BilinearRegressionFit.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/BilinearRegressionFit.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/CalibrationCurve.cs b/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/CalibrationCurve.cs index b4b20e56c98..20176ec4f8d 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/CalibrationCurve.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/CalibrationCurve.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/CalibrationCurveFitter.cs b/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/CalibrationCurveFitter.cs index bbb7400762b..a54f22ad76f 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/CalibrationCurveFitter.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/CalibrationCurveFitter.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/CalibrationCurveOptions.cs b/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/CalibrationCurveOptions.cs index 086abf16903..b598bd46df8 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/CalibrationCurveOptions.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/CalibrationCurveOptions.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/FiguresOfMerit.cs b/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/FiguresOfMerit.cs index 9fd4699cb89..48d751ce605 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/FiguresOfMerit.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/FiguresOfMerit.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/IFiguresOfMeritCalculator.cs b/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/IFiguresOfMeritCalculator.cs index baae23fe04d..1e111e07cae 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/IFiguresOfMeritCalculator.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/IFiguresOfMeritCalculator.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections.Generic; using System.Linq; using MathNet.Numerics.Statistics; diff --git a/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/LodCalculation.cs b/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/LodCalculation.cs index 97bde59650d..bae9b2db502 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/LodCalculation.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/LodCalculation.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/OptimizeType.cs b/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/OptimizeType.cs index 093bfb11f92..01029a0ab2c 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/OptimizeType.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/OptimizeType.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/QuantificationResult.cs b/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/QuantificationResult.cs index fb1b2e09286..984bca3e5df 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/QuantificationResult.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/QuantificationResult.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/QuantificationSettings.cs b/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/QuantificationSettings.cs index acdfc7caa83..eb88bbe9966 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/QuantificationSettings.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/QuantificationSettings.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/QuantificationStrings.Designer.cs b/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/QuantificationStrings.Designer.cs index 5b672001b55..fda0683179c 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/QuantificationStrings.Designer.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/QuantificationStrings.Designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/RegressionFit.cs b/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/RegressionFit.cs index 85a3e6e3161..7402497a341 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/RegressionFit.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/RegressionFit.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/RegressionWeighting.cs b/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/RegressionWeighting.cs index 6942dcd2c21..b86df6cc630 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/RegressionWeighting.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/RegressionWeighting.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/SampleType.cs b/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/SampleType.cs index bba34214237..d2c7ac206b4 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/SampleType.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/SampleType.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/ScoredBilinearCurve.cs b/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/ScoredBilinearCurve.cs index 46e6705b64d..9e584244a92 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/ScoredBilinearCurve.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/ScoredBilinearCurve.cs @@ -1,4 +1,4 @@ -using System.Collections.Generic; +using System.Collections.Generic; using System.Linq; using pwiz.Skyline.Util; diff --git a/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/TransitionsQuantLimit.cs b/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/TransitionsQuantLimit.cs index f50691ea428..e945404cf97 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/TransitionsQuantLimit.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/TransitionsQuantLimit.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections.Generic; using pwiz.Common.Collections; using pwiz.Skyline.Model.Hibernate; diff --git a/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/ValueStatus.cs b/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/ValueStatus.cs index 57bf186b3b8..158905ea887 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/ValueStatus.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/AbsoluteQuantification/ValueStatus.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/AnnotationCalculator.cs b/pwiz_tools/Skyline/Model/DocSettings/AnnotationCalculator.cs index 2667321a210..a0abdc78639 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/AnnotationCalculator.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/AnnotationCalculator.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/AnnotationDef.cs b/pwiz_tools/Skyline/Model/DocSettings/AnnotationDef.cs index fa5e3a8a6c3..59e5210c705 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/AnnotationDef.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/AnnotationDef.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/AnnotationExpression.cs b/pwiz_tools/Skyline/Model/DocSettings/AnnotationExpression.cs index 68dea94f25c..7a94c64ccbd 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/AnnotationExpression.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/AnnotationExpression.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Xml; using System.Xml.Schema; using System.Xml.Serialization; diff --git a/pwiz_tools/Skyline/Model/DocSettings/DataSettings.cs b/pwiz_tools/Skyline/Model/DocSettings/DataSettings.cs index 8ad4bd903bf..4f3aa9ffebd 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/DataSettings.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/DataSettings.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/DocSettingsResources.designer.cs b/pwiz_tools/Skyline/Model/DocSettings/DocSettingsResources.designer.cs index 24f35204875..24a3da5bb14 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/DocSettingsResources.designer.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/DocSettingsResources.designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Model/DocSettings/DocumentAnnotationUpdater.cs b/pwiz_tools/Skyline/Model/DocSettings/DocumentAnnotationUpdater.cs index eaa4ae2b682..5737e2e0fac 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/DocumentAnnotationUpdater.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/DocumentAnnotationUpdater.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/DriftTimePredictor.cs b/pwiz_tools/Skyline/Model/DocSettings/DriftTimePredictor.cs index e12acfd4729..6285e9e7406 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/DriftTimePredictor.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/DriftTimePredictor.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/Enzyme.cs b/pwiz_tools/Skyline/Model/DocSettings/Enzyme.cs index a2338e84fc9..4dccdd5936f 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/Enzyme.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/Enzyme.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/Extensions/SettingsExtensions.cs b/pwiz_tools/Skyline/Model/DocSettings/Extensions/SettingsExtensions.cs index 365548dc70a..ec26c485450 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/Extensions/SettingsExtensions.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/Extensions/SettingsExtensions.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/FullScanAcquisitionMethod.cs b/pwiz_tools/Skyline/Model/DocSettings/FullScanAcquisitionMethod.cs index e11e695e475..d892115ea5e 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/FullScanAcquisitionMethod.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/FullScanAcquisitionMethod.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/GridColumns.cs b/pwiz_tools/Skyline/Model/DocSettings/GridColumns.cs index 0756bfd453b..4e80fffd8b5 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/GridColumns.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/GridColumns.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/IFile.cs b/pwiz_tools/Skyline/Model/DocSettings/IFile.cs index dfdeb6b7f9b..2c74449cc48 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/IFile.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/IFile.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2025 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Skyline/Model/DocSettings/ImputationSettings.cs b/pwiz_tools/Skyline/Model/DocSettings/ImputationSettings.cs index 479df456a55..746c5985ba8 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/ImputationSettings.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/ImputationSettings.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/IsolationScheme.cs b/pwiz_tools/Skyline/Model/DocSettings/IsolationScheme.cs index b908a25265a..a2c598321ba 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/IsolationScheme.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/IsolationScheme.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/IsolationWindow.cs b/pwiz_tools/Skyline/Model/DocSettings/IsolationWindow.cs index 9838e92a7a4..896a17818b3 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/IsolationWindow.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/IsolationWindow.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/IsotopeEnrichments.cs b/pwiz_tools/Skyline/Model/DocSettings/IsotopeEnrichments.cs index 5d43f8a0d93..5bcb383527b 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/IsotopeEnrichments.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/IsotopeEnrichments.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/Loss.cs b/pwiz_tools/Skyline/Model/DocSettings/Loss.cs index 56b78aa5c32..741e35769ce 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/Loss.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/Loss.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/MeasuredIon.cs b/pwiz_tools/Skyline/Model/DocSettings/MeasuredIon.cs index 76e9897072b..27ff91d47c5 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/MeasuredIon.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/MeasuredIon.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/MetadataExtraction/ExtractedMetadataResult.cs b/pwiz_tools/Skyline/Model/DocSettings/MetadataExtraction/ExtractedMetadataResult.cs index 29c5e35688f..a07eb57ef46 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/MetadataExtraction/ExtractedMetadataResult.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/MetadataExtraction/ExtractedMetadataResult.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/MetadataExtraction/MetadataExtractor.cs b/pwiz_tools/Skyline/Model/DocSettings/MetadataExtraction/MetadataExtractor.cs index 3551b569d2e..12af9b8090f 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/MetadataExtraction/MetadataExtractor.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/MetadataExtraction/MetadataExtractor.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/MetadataExtraction/MetadataRuleSet.cs b/pwiz_tools/Skyline/Model/DocSettings/MetadataExtraction/MetadataRuleSet.cs index 9d867b2a317..e70197b1777 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/MetadataExtraction/MetadataRuleSet.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/MetadataExtraction/MetadataRuleSet.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/Modification.cs b/pwiz_tools/Skyline/Model/DocSettings/Modification.cs index 7cf5a77eefc..72f90565120 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/Modification.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/Modification.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/PeptideSettings.cs b/pwiz_tools/Skyline/Model/DocSettings/PeptideSettings.cs index 2081ccf9982..8b5e514eaea 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/PeptideSettings.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/PeptideSettings.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/Prediction.cs b/pwiz_tools/Skyline/Model/DocSettings/Prediction.cs index b4d2f0cbfcb..4cfc4812888 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/Prediction.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/Prediction.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/PropertyType.cs b/pwiz_tools/Skyline/Model/DocSettings/PropertyType.cs index aa2cebce4d7..3b428ea6693 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/PropertyType.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/PropertyType.cs @@ -1,4 +1,4 @@ -using System.Collections.Generic; +using System.Collections.Generic; using System.Linq; using pwiz.Common.Collections; using pwiz.Skyline.Model.Lists; diff --git a/pwiz_tools/Skyline/Model/DocSettings/RelativeAbundanceFormatting.cs b/pwiz_tools/Skyline/Model/DocSettings/RelativeAbundanceFormatting.cs index 1ab05e76fcb..c6f0d444a7c 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/RelativeAbundanceFormatting.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/RelativeAbundanceFormatting.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/ReportSpec.cs b/pwiz_tools/Skyline/Model/DocSettings/ReportSpec.cs index 7bd29d0c871..8a68d4e3f48 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/ReportSpec.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/ReportSpec.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/SrmSettings.cs b/pwiz_tools/Skyline/Model/DocSettings/SrmSettings.cs index 28eddd3bd48..4ad9ffc1385 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/SrmSettings.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/SrmSettings.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/TransitionIonMobilityFiltering.cs b/pwiz_tools/Skyline/Model/DocSettings/TransitionIonMobilityFiltering.cs index 625f3b6cbdc..2ca01459c28 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/TransitionIonMobilityFiltering.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/TransitionIonMobilityFiltering.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/TransitionSettings.cs b/pwiz_tools/Skyline/Model/DocSettings/TransitionSettings.cs index 4f1d4294546..615028dac63 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/TransitionSettings.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/TransitionSettings.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/UniMod.cs b/pwiz_tools/Skyline/Model/DocSettings/UniMod.cs index 4ffd2763591..1e73c7ec63e 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/UniMod.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/UniMod.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Alana Killeen , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocSettings/XmlNamedElement.cs b/pwiz_tools/Skyline/Model/DocSettings/XmlNamedElement.cs index 940271a4f8a..3c5c2108471 100644 --- a/pwiz_tools/Skyline/Model/DocSettings/XmlNamedElement.cs +++ b/pwiz_tools/Skyline/Model/DocSettings/XmlNamedElement.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/DocumentModifier.cs b/pwiz_tools/Skyline/Model/DocumentModifier.cs index 6210542e3e8..e2cfa35946c 100644 --- a/pwiz_tools/Skyline/Model/DocumentModifier.cs +++ b/pwiz_tools/Skyline/Model/DocumentModifier.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/ElementLocators/AuditLogRef.cs b/pwiz_tools/Skyline/Model/ElementLocators/AuditLogRef.cs index a06e9abe2c9..72d25a3a6fc 100644 --- a/pwiz_tools/Skyline/Model/ElementLocators/AuditLogRef.cs +++ b/pwiz_tools/Skyline/Model/ElementLocators/AuditLogRef.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/ElementLocators/ElementLocator.cs b/pwiz_tools/Skyline/Model/ElementLocators/ElementLocator.cs index b70fe28b098..1e22f194bfc 100644 --- a/pwiz_tools/Skyline/Model/ElementLocators/ElementLocator.cs +++ b/pwiz_tools/Skyline/Model/ElementLocators/ElementLocator.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/ElementLocators/ElementLocatorsResources.designer.cs b/pwiz_tools/Skyline/Model/ElementLocators/ElementLocatorsResources.designer.cs index 3c0b580ffc2..edc4a3b7250 100644 --- a/pwiz_tools/Skyline/Model/ElementLocators/ElementLocatorsResources.designer.cs +++ b/pwiz_tools/Skyline/Model/ElementLocators/ElementLocatorsResources.designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Model/ElementLocators/ElementRef.cs b/pwiz_tools/Skyline/Model/ElementLocators/ElementRef.cs index 4f663189480..08162cedc3f 100644 --- a/pwiz_tools/Skyline/Model/ElementLocators/ElementRef.cs +++ b/pwiz_tools/Skyline/Model/ElementLocators/ElementRef.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/ElementLocators/ElementRefs.cs b/pwiz_tools/Skyline/Model/ElementLocators/ElementRefs.cs index ea82c69624e..bd86afa73aa 100644 --- a/pwiz_tools/Skyline/Model/ElementLocators/ElementRefs.cs +++ b/pwiz_tools/Skyline/Model/ElementLocators/ElementRefs.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/ElementLocators/ExportAnnotations/DocumentAnnotations.cs b/pwiz_tools/Skyline/Model/ElementLocators/ExportAnnotations/DocumentAnnotations.cs index b35766c7c54..8cc5dbe3818 100644 --- a/pwiz_tools/Skyline/Model/ElementLocators/ExportAnnotations/DocumentAnnotations.cs +++ b/pwiz_tools/Skyline/Model/ElementLocators/ExportAnnotations/DocumentAnnotations.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/ElementLocators/ExportAnnotations/ElementHandler.cs b/pwiz_tools/Skyline/Model/ElementLocators/ExportAnnotations/ElementHandler.cs index d58df3c22f7..b424ad28ab5 100644 --- a/pwiz_tools/Skyline/Model/ElementLocators/ExportAnnotations/ElementHandler.cs +++ b/pwiz_tools/Skyline/Model/ElementLocators/ExportAnnotations/ElementHandler.cs @@ -1,4 +1,4 @@ -using System.Collections.Generic; +using System.Collections.Generic; using System.ComponentModel; using System.Linq; using pwiz.Common.DataBinding; diff --git a/pwiz_tools/Skyline/Model/ElementLocators/ExportAnnotations/ExportAnnotationSettings.cs b/pwiz_tools/Skyline/Model/ElementLocators/ExportAnnotations/ExportAnnotationSettings.cs index 518eb07d747..e491d12cda8 100644 --- a/pwiz_tools/Skyline/Model/ElementLocators/ExportAnnotations/ExportAnnotationSettings.cs +++ b/pwiz_tools/Skyline/Model/ElementLocators/ExportAnnotations/ExportAnnotationSettings.cs @@ -1,4 +1,4 @@ -using System.Collections.Generic; +using System.Collections.Generic; using System.Linq; using pwiz.Common.Collections; using pwiz.Common.DataBinding; diff --git a/pwiz_tools/Skyline/Model/ElementLocators/ExportAnnotations/TextColumnWrapper.cs b/pwiz_tools/Skyline/Model/ElementLocators/ExportAnnotations/TextColumnWrapper.cs index 792300dbddf..476c0db29c1 100644 --- a/pwiz_tools/Skyline/Model/ElementLocators/ExportAnnotations/TextColumnWrapper.cs +++ b/pwiz_tools/Skyline/Model/ElementLocators/ExportAnnotations/TextColumnWrapper.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/ElementLocators/ListRef.cs b/pwiz_tools/Skyline/Model/ElementLocators/ListRef.cs index ff16cf41b17..117e31ff722 100644 --- a/pwiz_tools/Skyline/Model/ElementLocators/ListRef.cs +++ b/pwiz_tools/Skyline/Model/ElementLocators/ListRef.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections.Generic; using System.Globalization; using System.Linq; diff --git a/pwiz_tools/Skyline/Model/ElementLocators/NodeRef.cs b/pwiz_tools/Skyline/Model/ElementLocators/NodeRef.cs index 940d375cfdc..f76e473f622 100644 --- a/pwiz_tools/Skyline/Model/ElementLocators/NodeRef.cs +++ b/pwiz_tools/Skyline/Model/ElementLocators/NodeRef.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/ElementLocators/ReplicateRef.cs b/pwiz_tools/Skyline/Model/ElementLocators/ReplicateRef.cs index 48c09aa1bcb..54e7e6cebb1 100644 --- a/pwiz_tools/Skyline/Model/ElementLocators/ReplicateRef.cs +++ b/pwiz_tools/Skyline/Model/ElementLocators/ReplicateRef.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/ElementLocators/ResultRef.cs b/pwiz_tools/Skyline/Model/ElementLocators/ResultRef.cs index 34f372dc1cd..51d9532209b 100644 --- a/pwiz_tools/Skyline/Model/ElementLocators/ResultRef.cs +++ b/pwiz_tools/Skyline/Model/ElementLocators/ResultRef.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Esp/EspFeatureCalc.cs b/pwiz_tools/Skyline/Model/Esp/EspFeatureCalc.cs index dc8d73626f3..36ac8895536 100644 --- a/pwiz_tools/Skyline/Model/Esp/EspFeatureCalc.cs +++ b/pwiz_tools/Skyline/Model/Esp/EspFeatureCalc.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Esp/EspFeatureDb.cs b/pwiz_tools/Skyline/Model/Esp/EspFeatureDb.cs index d98c9530c4b..d1b0b85a4ff 100644 --- a/pwiz_tools/Skyline/Model/Esp/EspFeatureDb.cs +++ b/pwiz_tools/Skyline/Model/Esp/EspFeatureDb.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Esp/GasPhaseBasicityCalc.cs b/pwiz_tools/Skyline/Model/Esp/GasPhaseBasicityCalc.cs index ff6375a9ef3..ea046bbdbf0 100644 --- a/pwiz_tools/Skyline/Model/Esp/GasPhaseBasicityCalc.cs +++ b/pwiz_tools/Skyline/Model/Esp/GasPhaseBasicityCalc.cs @@ -1,4 +1,4 @@ -/* +/* * Translator: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Esp/PiCalc.cs b/pwiz_tools/Skyline/Model/Esp/PiCalc.cs index 234408b983c..036c94e206e 100644 --- a/pwiz_tools/Skyline/Model/Esp/PiCalc.cs +++ b/pwiz_tools/Skyline/Model/Esp/PiCalc.cs @@ -1,4 +1,4 @@ -/* +/* * Translator: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Export.cs b/pwiz_tools/Skyline/Model/Export.cs index 400b7aeb659..dee819818ec 100644 --- a/pwiz_tools/Skyline/Model/Export.cs +++ b/pwiz_tools/Skyline/Model/Export.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/ExportChromatograms.cs b/pwiz_tools/Skyline/Model/ExportChromatograms.cs index bec0a1d92a5..33d50bd0c25 100644 --- a/pwiz_tools/Skyline/Model/ExportChromatograms.cs +++ b/pwiz_tools/Skyline/Model/ExportChromatograms.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Dario Amodei , * Mallick Lab, Department of Radiology, Stanford University * diff --git a/pwiz_tools/Skyline/Model/Files/BackgroundProteome.cs b/pwiz_tools/Skyline/Model/Files/BackgroundProteome.cs index b73ea47d26d..55ab4029b54 100644 --- a/pwiz_tools/Skyline/Model/Files/BackgroundProteome.cs +++ b/pwiz_tools/Skyline/Model/Files/BackgroundProteome.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2025 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Skyline/Model/Files/BackgroundProteomeFolder.cs b/pwiz_tools/Skyline/Model/Files/BackgroundProteomeFolder.cs index 1cf105655c3..55299dd9601 100644 --- a/pwiz_tools/Skyline/Model/Files/BackgroundProteomeFolder.cs +++ b/pwiz_tools/Skyline/Model/Files/BackgroundProteomeFolder.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2025 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Skyline/Model/Files/FileModel.cs b/pwiz_tools/Skyline/Model/Files/FileModel.cs index e9667cadde5..e7257a37ddc 100644 --- a/pwiz_tools/Skyline/Model/Files/FileModel.cs +++ b/pwiz_tools/Skyline/Model/Files/FileModel.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2025 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); @@ -14,9 +14,12 @@ * limitations under the License. */ +using System; using System.Collections.Generic; using System.IO; using pwiz.Common.Collections; +using pwiz.Skyline.Model.Databinding; +using pwiz.Skyline.Model.Databinding.Entities; /* * rat-plasma.sky @@ -88,6 +91,10 @@ protected FileModel(string documentFilePath, IdentityPath identityPath) public override string ToString() => @$"{GetType().Name}: " + (Name ?? string.Empty); + // Provide a way to instantiate the PropertyObject for this model + public virtual Func PropertyObjectInstancer => + (dataSchema, localFilePath) => null; + /// /// Use this to decide whether the file represented by this model is ready to be monitored. A model may not be ready if: /// (1) it does not represent a local file diff --git a/pwiz_tools/Skyline/Model/Files/FileResources.Designer.cs b/pwiz_tools/Skyline/Model/Files/FileResources.Designer.cs index efdeb7764dd..690f50eb0b1 100644 --- a/pwiz_tools/Skyline/Model/Files/FileResources.Designer.cs +++ b/pwiz_tools/Skyline/Model/Files/FileResources.Designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Model/Files/FileResources.resx b/pwiz_tools/Skyline/Model/Files/FileResources.resx index 00903208ab1..594ba03d4d7 100644 --- a/pwiz_tools/Skyline/Model/Files/FileResources.resx +++ b/pwiz_tools/Skyline/Model/Files/FileResources.resx @@ -1,4 +1,4 @@ - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + text/microsoft-resx + + + 2.0 + + + System.Resources.ResXResourceReader, System.Windows.Forms, Version=4.0.0.0, Culture=neutral, PublicKeyToken=b77a5c561934e089 + + + System.Resources.ResXResourceWriter, System.Windows.Forms, Version=4.0.0.0, Culture=neutral, PublicKeyToken=b77a5c561934e089 + + + Name + + + File Path + + + Size + + + Analyte Concentration + + + Batch Name + + + Sample Dilution Factor + + + Sample Type + + + Annotation Note + + + Max Retention Time + + + Max Intensity + + + Model + + + Ionization + + + Analyzer + + + Detector + + + Number of Replicates + + + Instrument + + + Acquisition Time + + + Library Type + + + Local File Path + + + Spectrum Count + + + Total Psm Count + + + Unique Peptide Count + + + Revision + + + Version + + + Id + + + Score Type + + + Score Threshold + + + Name of the file + + + Path to the file on local disk + + + Size of the file + + + Measured concentration of the target analyte in this replicate sample + + + Name of the batch + + + Dilution factor applied to this sample prior to analysis + + + Type of sample: Unknown, Standard, QC, Blank, Double Blank, or Solvent + + + Custom notes or comments added by the user for this replicate + + + Maximum retention time window for peak integration (minutes) + + + Maximum peak intensity observed in this replicate + + + Mass spectrometer model used for data acquisition + + + Ionization method used for MS analysis + + + Mass analyzer type used for detection + + + Ion detector type used in the mass spectrometer + + + Number of replicate files in this folder + + + Timestamp of when this replicate's MS data collection began + + + Files + + + Replicate + + + Instrument + + + Instruments + + + Annotations + + + Spectral Library + + \ No newline at end of file diff --git a/pwiz_tools/Skyline/Model/Files/RTCalc.cs b/pwiz_tools/Skyline/Model/Files/RTCalc.cs index 5909977a462..a1273168f54 100644 --- a/pwiz_tools/Skyline/Model/Files/RTCalc.cs +++ b/pwiz_tools/Skyline/Model/Files/RTCalc.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2025 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Skyline/Model/Files/RTCalcFolder.cs b/pwiz_tools/Skyline/Model/Files/RTCalcFolder.cs index 1b610d52ea1..bb4603d8065 100644 --- a/pwiz_tools/Skyline/Model/Files/RTCalcFolder.cs +++ b/pwiz_tools/Skyline/Model/Files/RTCalcFolder.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2025 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Skyline/Model/Files/Replicate.cs b/pwiz_tools/Skyline/Model/Files/Replicate.cs index dff6fdb7c8c..667c47f7d25 100644 --- a/pwiz_tools/Skyline/Model/Files/Replicate.cs +++ b/pwiz_tools/Skyline/Model/Files/Replicate.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2025 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); @@ -14,11 +14,14 @@ * limitations under the License. */ +using System; using System.Collections.Generic; using System.Linq; using JetBrains.Annotations; using pwiz.Common.Collections; using pwiz.Skyline.Model.AuditLog; +using pwiz.Skyline.Model.Databinding; +using pwiz.Skyline.Model.Databinding.Entities; using pwiz.Skyline.Model.DocSettings; using pwiz.Skyline.Model.Results; @@ -57,6 +60,14 @@ public static ChromatogramSet LoadChromSetFromDocument(SrmDocument document, Rep return chromSet; } + public override Func PropertyObjectInstancer => + (dataSchema, localFilePath) => + { + var chromSetId = IdentityPath.GetIdentity(0); + dataSchema.Document.MeasuredResults.TryGetChromatogramSet(chromSetId.GlobalIndex, out _, out var index); + return new Databinding.Entities.Replicate(dataSchema, index); + }; + public static ModifiedDocument Delete(SrmDocument document, SrmSettingsChangeMonitor monitor, List models) { var deleteIds = models.Select(model => ReferenceValue.Of(model.IdentityPath.Child)).ToHashSet(); diff --git a/pwiz_tools/Skyline/Model/Files/ReplicateSampleFile.cs b/pwiz_tools/Skyline/Model/Files/ReplicateSampleFile.cs index 8bd189120b0..c77cd215909 100644 --- a/pwiz_tools/Skyline/Model/Files/ReplicateSampleFile.cs +++ b/pwiz_tools/Skyline/Model/Files/ReplicateSampleFile.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2025 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Skyline/Model/Files/ReplicatesFolder.cs b/pwiz_tools/Skyline/Model/Files/ReplicatesFolder.cs index e90f851075c..fe733037d58 100644 --- a/pwiz_tools/Skyline/Model/Files/ReplicatesFolder.cs +++ b/pwiz_tools/Skyline/Model/Files/ReplicatesFolder.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2025 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Skyline/Model/Files/SkylineAuditLog.cs b/pwiz_tools/Skyline/Model/Files/SkylineAuditLog.cs index 1174b085b01..3a88d5c4526 100644 --- a/pwiz_tools/Skyline/Model/Files/SkylineAuditLog.cs +++ b/pwiz_tools/Skyline/Model/Files/SkylineAuditLog.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2025 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Skyline/Model/Files/SkylineChromatogramCache.cs b/pwiz_tools/Skyline/Model/Files/SkylineChromatogramCache.cs index bbb51df71f9..f66d5ac3196 100644 --- a/pwiz_tools/Skyline/Model/Files/SkylineChromatogramCache.cs +++ b/pwiz_tools/Skyline/Model/Files/SkylineChromatogramCache.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2025 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Skyline/Model/Files/SkylineFile.cs b/pwiz_tools/Skyline/Model/Files/SkylineFile.cs index 0965948daac..47c7ca9765b 100644 --- a/pwiz_tools/Skyline/Model/Files/SkylineFile.cs +++ b/pwiz_tools/Skyline/Model/Files/SkylineFile.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2025 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Skyline/Model/Files/SkylineViewFile.cs b/pwiz_tools/Skyline/Model/Files/SkylineViewFile.cs index 8ddce01b258..51e0b57af5c 100644 --- a/pwiz_tools/Skyline/Model/Files/SkylineViewFile.cs +++ b/pwiz_tools/Skyline/Model/Files/SkylineViewFile.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2025 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Skyline/Model/Files/SpectralLibrariesFolder.cs b/pwiz_tools/Skyline/Model/Files/SpectralLibrariesFolder.cs index 62901270b13..8d2bce06523 100644 --- a/pwiz_tools/Skyline/Model/Files/SpectralLibrariesFolder.cs +++ b/pwiz_tools/Skyline/Model/Files/SpectralLibrariesFolder.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2025 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Skyline/Model/Files/SpectralLibrary.cs b/pwiz_tools/Skyline/Model/Files/SpectralLibrary.cs index 3ffd1c99232..f3f7f6d8cb5 100644 --- a/pwiz_tools/Skyline/Model/Files/SpectralLibrary.cs +++ b/pwiz_tools/Skyline/Model/Files/SpectralLibrary.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2025 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); @@ -14,10 +14,13 @@ * limitations under the License. */ +using System; using System.Collections.Generic; using System.Linq; using pwiz.Common.Collections; using pwiz.Skyline.Model.AuditLog; +using pwiz.Skyline.Model.Databinding; +using pwiz.Skyline.Model.Databinding.Entities; using pwiz.Skyline.Model.DocSettings; using pwiz.Skyline.Model.Lib; @@ -51,6 +54,9 @@ public static LibrarySpec LoadLibrarySpecFromDocument(SrmDocument document, Spec return document.Settings.PeptideSettings.Libraries.FindLibrarySpec(library.IdentityPath.GetIdentity(0)); } + public override Func PropertyObjectInstancer => + (dataSchema, localFilePath) => new Databinding.Entities.SpectralLibrary(dataSchema, Name, FilePath, localFilePath); + public static ModifiedDocument Delete(SrmDocument document, SrmSettingsChangeMonitor monitor, List models) { var deleteIds = models.Select(model => ReferenceValue.Of(model.IdentityPath.Child)).ToHashSet(); diff --git a/pwiz_tools/Skyline/Model/Find/AbstractDocNodeFinder.cs b/pwiz_tools/Skyline/Model/Find/AbstractDocNodeFinder.cs index c901ae78ab1..f44079a5696 100644 --- a/pwiz_tools/Skyline/Model/Find/AbstractDocNodeFinder.cs +++ b/pwiz_tools/Skyline/Model/Find/AbstractDocNodeFinder.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Find/AbstractFinder.cs b/pwiz_tools/Skyline/Model/Find/AbstractFinder.cs index 8e5eb0f8162..698cf54fd83 100644 --- a/pwiz_tools/Skyline/Model/Find/AbstractFinder.cs +++ b/pwiz_tools/Skyline/Model/Find/AbstractFinder.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Find/AbstractTransitionResultFinder.cs b/pwiz_tools/Skyline/Model/Find/AbstractTransitionResultFinder.cs index 67619c8ba53..cd7fedccc87 100644 --- a/pwiz_tools/Skyline/Model/Find/AbstractTransitionResultFinder.cs +++ b/pwiz_tools/Skyline/Model/Find/AbstractTransitionResultFinder.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Find/Bookmark.cs b/pwiz_tools/Skyline/Model/Find/Bookmark.cs index e9ecf9d43cb..0b172d5130d 100644 --- a/pwiz_tools/Skyline/Model/Find/Bookmark.cs +++ b/pwiz_tools/Skyline/Model/Find/Bookmark.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Find/BookmarkEnumerator.cs b/pwiz_tools/Skyline/Model/Find/BookmarkEnumerator.cs index 1ea50b6b4c9..9b334875f40 100644 --- a/pwiz_tools/Skyline/Model/Find/BookmarkEnumerator.cs +++ b/pwiz_tools/Skyline/Model/Find/BookmarkEnumerator.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Find/BookmarkStartPosition.cs b/pwiz_tools/Skyline/Model/Find/BookmarkStartPosition.cs index 5bf458d5005..168105b00fd 100644 --- a/pwiz_tools/Skyline/Model/Find/BookmarkStartPosition.cs +++ b/pwiz_tools/Skyline/Model/Find/BookmarkStartPosition.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Find/DuplicatedPeptideFinder.cs b/pwiz_tools/Skyline/Model/Find/DuplicatedPeptideFinder.cs index a3f928a7e40..c3f5095c0e9 100644 --- a/pwiz_tools/Skyline/Model/Find/DuplicatedPeptideFinder.cs +++ b/pwiz_tools/Skyline/Model/Find/DuplicatedPeptideFinder.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2022 diff --git a/pwiz_tools/Skyline/Model/Find/FindMatch.cs b/pwiz_tools/Skyline/Model/Find/FindMatch.cs index 44fdf6e3f52..0a4d7407506 100644 --- a/pwiz_tools/Skyline/Model/Find/FindMatch.cs +++ b/pwiz_tools/Skyline/Model/Find/FindMatch.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Find/FindOptions.cs b/pwiz_tools/Skyline/Model/Find/FindOptions.cs index e4e1b547d59..7ec6bd433fd 100644 --- a/pwiz_tools/Skyline/Model/Find/FindOptions.cs +++ b/pwiz_tools/Skyline/Model/Find/FindOptions.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Find/FindPredicate.cs b/pwiz_tools/Skyline/Model/Find/FindPredicate.cs index 95d5e08166e..21ca141fe1f 100644 --- a/pwiz_tools/Skyline/Model/Find/FindPredicate.cs +++ b/pwiz_tools/Skyline/Model/Find/FindPredicate.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Find/FindResult.cs b/pwiz_tools/Skyline/Model/Find/FindResult.cs index e00ae202b6b..dd83b254990 100644 --- a/pwiz_tools/Skyline/Model/Find/FindResult.cs +++ b/pwiz_tools/Skyline/Model/Find/FindResult.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Find/Finders.cs b/pwiz_tools/Skyline/Model/Find/Finders.cs index 0e35e1a8575..d6630658503 100644 --- a/pwiz_tools/Skyline/Model/Find/Finders.cs +++ b/pwiz_tools/Skyline/Model/Find/Finders.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Find/IFinder.cs b/pwiz_tools/Skyline/Model/Find/IFinder.cs index f37b2e2480c..4079e9290df 100644 --- a/pwiz_tools/Skyline/Model/Find/IFinder.cs +++ b/pwiz_tools/Skyline/Model/Find/IFinder.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Find/ManuallyIntegratedPeakFinder.cs b/pwiz_tools/Skyline/Model/Find/ManuallyIntegratedPeakFinder.cs index 4ec2e25fdba..8e805e3b377 100644 --- a/pwiz_tools/Skyline/Model/Find/ManuallyIntegratedPeakFinder.cs +++ b/pwiz_tools/Skyline/Model/Find/ManuallyIntegratedPeakFinder.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Find/MismatchedIsotopeTransitionsFinder.cs b/pwiz_tools/Skyline/Model/Find/MismatchedIsotopeTransitionsFinder.cs index 87df40b42b7..fcd0bd49fc8 100644 --- a/pwiz_tools/Skyline/Model/Find/MismatchedIsotopeTransitionsFinder.cs +++ b/pwiz_tools/Skyline/Model/Find/MismatchedIsotopeTransitionsFinder.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Find/MissingAllResultsFinder.cs b/pwiz_tools/Skyline/Model/Find/MissingAllResultsFinder.cs index d389813f976..b0b6d0bb5f4 100644 --- a/pwiz_tools/Skyline/Model/Find/MissingAllResultsFinder.cs +++ b/pwiz_tools/Skyline/Model/Find/MissingAllResultsFinder.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Find/MissingAnyResultsFinder.cs b/pwiz_tools/Skyline/Model/Find/MissingAnyResultsFinder.cs index 893cdd92417..e34a4b1df48 100644 --- a/pwiz_tools/Skyline/Model/Find/MissingAnyResultsFinder.cs +++ b/pwiz_tools/Skyline/Model/Find/MissingAnyResultsFinder.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Find/MissingLibraryDataFinder.cs b/pwiz_tools/Skyline/Model/Find/MissingLibraryDataFinder.cs index 88bd20ae335..ead005e9e5c 100644 --- a/pwiz_tools/Skyline/Model/Find/MissingLibraryDataFinder.cs +++ b/pwiz_tools/Skyline/Model/Find/MissingLibraryDataFinder.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Find/MissingScoresFinder.cs b/pwiz_tools/Skyline/Model/Find/MissingScoresFinder.cs index cedfb9372ba..ac0ffafcf80 100644 --- a/pwiz_tools/Skyline/Model/Find/MissingScoresFinder.cs +++ b/pwiz_tools/Skyline/Model/Find/MissingScoresFinder.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Dario Amodei , * Mallick Lab, Department of Radiology, Stanford University * diff --git a/pwiz_tools/Skyline/Model/Find/TruncatedPeakFinder.cs b/pwiz_tools/Skyline/Model/Find/TruncatedPeakFinder.cs index 63c342a7431..5ff6127b2f2 100644 --- a/pwiz_tools/Skyline/Model/Find/TruncatedPeakFinder.cs +++ b/pwiz_tools/Skyline/Model/Find/TruncatedPeakFinder.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Find/UnintegratedTransitionFinder.cs b/pwiz_tools/Skyline/Model/Find/UnintegratedTransitionFinder.cs index a7b1b66ddd8..5a01681c177 100644 --- a/pwiz_tools/Skyline/Model/Find/UnintegratedTransitionFinder.cs +++ b/pwiz_tools/Skyline/Model/Find/UnintegratedTransitionFinder.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/FragmentedMolecule.cs b/pwiz_tools/Skyline/Model/FragmentedMolecule.cs index 209cfaf89c8..017aefa0bf3 100644 --- a/pwiz_tools/Skyline/Model/FragmentedMolecule.cs +++ b/pwiz_tools/Skyline/Model/FragmentedMolecule.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/FullScanProperties.cs b/pwiz_tools/Skyline/Model/FullScanProperties.cs index fa78dbf0a04..c2aa1ed5b45 100644 --- a/pwiz_tools/Skyline/Model/FullScanProperties.cs +++ b/pwiz_tools/Skyline/Model/FullScanProperties.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Rita Chupalov , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/FullScanPropertiesRes.Designer.cs b/pwiz_tools/Skyline/Model/FullScanPropertiesRes.Designer.cs index f89c5ca7576..747863ba6b6 100644 --- a/pwiz_tools/Skyline/Model/FullScanPropertiesRes.Designer.cs +++ b/pwiz_tools/Skyline/Model/FullScanPropertiesRes.Designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Model/GlobalizedObject.cs b/pwiz_tools/Skyline/Model/GlobalizedObject.cs index 49cad16e359..e8a62ba492c 100644 --- a/pwiz_tools/Skyline/Model/GlobalizedObject.cs +++ b/pwiz_tools/Skyline/Model/GlobalizedObject.cs @@ -1,24 +1,43 @@ -using System; +/* + * Copyright 2025 University of Washington - Seattle, WA + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ + +using Newtonsoft.Json; +using pwiz.Common.SystemUtil; +using pwiz.Skyline.Model.Databinding; +using pwiz.Skyline.Model.DocSettings; +using System; using System.Collections.Generic; using System.ComponentModel; +using System.Globalization; using System.IO; using System.Linq; using System.Reflection; using System.Resources; -using Newtonsoft.Json; namespace pwiz.Skyline.Model { public class UseToCompare : Attribute { public bool IsUsed { get; set; } - public static readonly UseToCompare Yes = new UseToCompare(true); - public static readonly UseToCompare No = new UseToCompare(false); + public static readonly UseToCompare YES = new UseToCompare(true); + public static readonly UseToCompare NO = new UseToCompare(false); public UseToCompare(bool isUsed) { IsUsed = isUsed; - BrowsableAttribute myAttribute = BrowsableAttribute.Yes; } } @@ -30,9 +49,9 @@ public UseToCompare(bool isUsed) /// public abstract class GlobalizedObject : ICustomTypeDescriptor { - private PropertyDescriptorCollection globalizedProps; + private PropertyDescriptorCollection _globalizedProps; - private static Dictionary TypeConverterDictionary; + private static readonly Dictionary TYPE_CONVERTER_DICTIONARY; private static string GetConverterKey(Type fromType, Type toType) { @@ -43,22 +62,22 @@ static GlobalizedObject() //Initialize the dictionary of type conversion methods. var methodList = typeof(Convert).GetMethods() .Where(method => method.GetParameters().Length == 1 && method.Name.StartsWith(@"To")).ToList(); - TypeConverterDictionary = new Dictionary(); + TYPE_CONVERTER_DICTIONARY = new Dictionary(); foreach (var method in methodList) { var methodKey = GetConverterKey(method.GetParameters().First().ParameterType, method.ReturnType); - if(!TypeConverterDictionary.ContainsKey(methodKey)) - TypeConverterDictionary.Add(methodKey, method); + if(!TYPE_CONVERTER_DICTIONARY.ContainsKey(methodKey)) + TYPE_CONVERTER_DICTIONARY.Add(methodKey, method); } } protected abstract ResourceManager GetResourceManager(); - - public String GetClassName() => TypeDescriptor.GetClassName(this, true); + + public string GetClassName() => TypeDescriptor.GetClassName(this, true); public AttributeCollection GetAttributes() => TypeDescriptor.GetAttributes(this, true); - public String GetComponentName() => TypeDescriptor.GetComponentName(this, true); + public string GetComponentName() => TypeDescriptor.GetComponentName(this, true); public TypeConverter GetConverter() => TypeDescriptor.GetConverter(this, true); @@ -81,46 +100,35 @@ static GlobalizedObject() /// public PropertyDescriptorCollection GetProperties(Attribute[] attributes) { - if (globalizedProps == null) + /*if (this is PeptideDocNodeProperties peptideDocNodeProperties) + { + return new PropertyDescriptorCollection(peptideDocNodeProperties._peptide.DataSchema.GetPropertyDescriptors(peptideDocNodeProperties + ._peptide.GetType()).ToArray()); + }*/ + if (_globalizedProps == null) { // Get the collection of properties - PropertyDescriptorCollection baseProps = TypeDescriptor.GetProperties(this, attributes, true); + var baseProps = TypeDescriptor.GetProperties(this, attributes, true); - globalizedProps = new PropertyDescriptorCollection(null); + _globalizedProps = new PropertyDescriptorCollection(null); // For each property use a property descriptor of our own that is able to be globalized foreach (PropertyDescriptor oProp in baseProps) { // Only display properties whose values have been set - if (oProp.GetValue(this) != null) - { - globalizedProps.Add(new GlobalizedPropertyDescriptor(oProp, GetResourceManager())); - } + if (oProp.GetValue(this) == null) + continue; + + _globalizedProps.Add(new GlobalizedPropertyDescriptor(oProp, GetResourceManager())); } } - return globalizedProps; + + return _globalizedProps; } public PropertyDescriptorCollection GetProperties() { - // Only do once - if (globalizedProps == null) - { - // Get the collection of properties - PropertyDescriptorCollection baseProps = TypeDescriptor.GetProperties(this, true); - globalizedProps = new PropertyDescriptorCollection(null); - - // For each property use a property descriptor of our own that is able to be globalized - foreach (PropertyDescriptor oProp in baseProps) - { - // Only display properties whose values have been set - if (oProp.GetValue(this) != null) - { - globalizedProps.Add(new GlobalizedPropertyDescriptor(oProp, GetResourceManager())); - } - } - } - return globalizedProps; + return GetProperties(null); } #region Test suppport @@ -129,18 +137,19 @@ public List GetDifference(GlobalizedObject other) { if(other == null) return new List { @"The other object is null." }; - if (this.GetType() != other.GetType()) - return new List { string.Format(@"The other object of of type {0}.", other.GetType().Name) }; + if (GetType() != other.GetType()) + return new List { $@"The other object of of type {other.GetType().Name}." }; if (GetPropertiesForComparison().Count != other.GetPropertiesForComparison().Count) - return new List{string.Format(@"This count is {0}, but other count is {1}", GetPropertiesForComparison().Count, other.GetPropertiesForComparison().Count)}; + return new List { $@"This count is {GetPropertiesForComparison().Count}, but other count is {other.GetPropertiesForComparison().Count}" }; + var thisProps = GetPropertiesForComparison() .ToDictionary(prop => prop.Name, prop => prop.GetValue(this)); var otherProps = other.GetPropertiesForComparison() .ToDictionary(prop => prop.Name, prop => prop.GetValue(other)); var joinedValues = (from t in thisProps - join o in otherProps on t.Key equals o.Key - select new {k = t.Key, t = t.Value, o = o.Value }).ToList(); + join o in otherProps on t.Key equals o.Key + select new {k = t.Key, t = t.Value, o = o.Value }).ToList(); if (joinedValues.Count != thisProps.Count) return new List { @"The two objects have different sets of properties." }; var res = joinedValues.Where(tuple => @@ -149,7 +158,7 @@ join o in otherProps on t.Key equals o.Key return !tg.IsSameAs(to); return !tuple.t.Equals(tuple.o); }); - return res.Select(r => string.Format(@"Key:{0}, this value:{1}, other value:{2}", r.k, r.t, r.o)).ToList(); + return res.Select(r => $@"Key:{r.k}, this value:{r.t}, other value:{r.o}").ToList(); } public bool IsSameAs(GlobalizedObject other) @@ -159,13 +168,13 @@ public bool IsSameAs(GlobalizedObject other) public List GetPropertiesForComparison() { - return GetProperties().Cast().Where(prop => !prop.Attributes.Contains(UseToCompare.No)).ToList(); + return GetProperties().Cast().Where(prop => !prop.Attributes.Contains(UseToCompare.NO)).ToList(); } public string Serialize() { - StringWriter sw = new StringWriter(); + var sw = new StringWriter(); SerializeToDictionary(sw); return sw.ToString(); } @@ -173,7 +182,7 @@ public string Serialize() private void SerializeToJson(JsonWriter writer) { var thisProps = GetProperties().Cast() - .Where(prop => !prop.Attributes.Contains(UseToCompare.No) && prop.GetValue(this) != null) + .Where(prop => !prop.Attributes.Contains(UseToCompare.NO) && prop.GetValue(this) != null) .ToDictionary(prop => prop.Name, prop => prop.GetValue(this)); writer.WriteStartObject(); @@ -191,7 +200,7 @@ private void SerializeToJson(JsonWriter writer) private void SerializeToDictionary(StringWriter sw) { var thisProps = GetProperties().Cast() - .Where(prop => !prop.Attributes.Contains(UseToCompare.No) && prop.GetValue(this) != null) + .Where(prop => !prop.Attributes.Contains(UseToCompare.NO) && prop.GetValue(this) != null) .Select(prop => new {name = prop.Name, val = prop.GetValue(this)}).ToList(); sw.WriteLine(@"new Dictionary {"); for(int i = 0; i < thisProps.Count; i++) @@ -226,7 +235,7 @@ public void Deserialize(Dictionary valueDict) var converterKey = GetConverterKey(val.Value.GetType(), actualPropType); if (actualPropType.BaseType == typeof(GlobalizedObject) && val.Value is Dictionary nestedDictionary) { - var nestedObject = (GlobalizedObject) actualPropType.InvokeMember(actualPropType.Name, BindingFlags.Public | + var nestedObject = (GlobalizedObject)actualPropType.InvokeMember(actualPropType.Name, BindingFlags.Public | BindingFlags.Instance | BindingFlags.CreateInstance, null, null, new object[] { }); @@ -235,12 +244,12 @@ public void Deserialize(Dictionary valueDict) } else { - if (!TypeConverterDictionary.ContainsKey(converterKey) && propDict[val.Key].PropertyType.Name.StartsWith(@"Nullable")) + if (!TYPE_CONVERTER_DICTIONARY.ContainsKey(converterKey) && propDict[val.Key].PropertyType.Name.StartsWith(@"Nullable")) { actualPropType = propDict[val.Key].PropertyType.GetGenericArguments()[0]; converterKey = GetConverterKey(val.Value.GetType(), actualPropType); } - if (TypeConverterDictionary.TryGetValue(converterKey, out var parseMethod)) + if (TYPE_CONVERTER_DICTIONARY.TryGetValue(converterKey, out var parseMethod)) { var value = parseMethod.Invoke(this, new[] { val.Value }); propDict[val.Key].SetValue(this, value); @@ -251,6 +260,7 @@ public void Deserialize(Dictionary valueDict) } } } + #endregion } @@ -264,54 +274,47 @@ public void Deserialize(Dictionary valueDict) /// public class GlobalizedPropertyDescriptor : PropertyDescriptor { - private readonly PropertyDescriptor basePropertyDescriptor; - public bool ReadOnly = true; - private static string _descriptionPrefix = @"Description_"; - private static string _categoryPrefix = @"Category_"; + private const string DESCRIPTION_PREFIX = @"Description_"; + protected const string CATEGORY_PREFIX = @"Category_"; + private readonly ResourceManager _resourceManager; + private readonly PropertyDescriptor _basePropertyDescriptor; - public GlobalizedPropertyDescriptor(PropertyDescriptor basePropertyDescriptor, ResourceManager resourceManager) : base(basePropertyDescriptor) + public GlobalizedPropertyDescriptor(PropertyDescriptor basePropertyDescriptor, ResourceManager resourceManager) + : base(basePropertyDescriptor) { - this.basePropertyDescriptor = basePropertyDescriptor; + _basePropertyDescriptor = basePropertyDescriptor; _resourceManager = resourceManager; } public override bool CanResetValue(object component) { - return basePropertyDescriptor.CanResetValue(component); + return _basePropertyDescriptor.CanResetValue(component); } - public override Type ComponentType - { - get => basePropertyDescriptor.ComponentType; - } + public override Type ComponentType => _basePropertyDescriptor.ComponentType; public override string DisplayName { get { // Get display name from CommandArgName - var displayNameKey = basePropertyDescriptor.Name; + var displayNameKey = _basePropertyDescriptor.Name; return _resourceManager.GetString(displayNameKey); } } - - public override string Description - { - get - { - return _resourceManager.GetString(_descriptionPrefix + basePropertyDescriptor.Name) ?? string.Empty; - } - } - + + public override string Description => _resourceManager.GetString(DESCRIPTION_PREFIX + _basePropertyDescriptor.Name) ?? string.Empty; + public override string Category { get { - if (basePropertyDescriptor.Category != null) - { - return _resourceManager.GetString(_categoryPrefix + basePropertyDescriptor.Category) ?? string.Empty; - } + if (_basePropertyDescriptor is AnnotationPropertyDescriptor) + return PropertyGridResources.Category_Annotations; + + if (_basePropertyDescriptor.Category != null) + return _resourceManager.GetString(CATEGORY_PREFIX + _basePropertyDescriptor.Category) ?? string.Empty; return null; } @@ -320,43 +323,120 @@ public override string Category public override object GetValue(object component) { // Doesn't display default values to highlight changed ones - var value = basePropertyDescriptor.GetValue(component); - if (value == null) - return string.Empty; - if (value is bool && !(bool)value) + var value = _basePropertyDescriptor.GetValue(component); + if (value == null || (value is bool b && !b)) return string.Empty; return value; } - public override bool IsReadOnly + public override bool IsReadOnly => _basePropertyDescriptor.IsReadOnly; + + public override string Name => _basePropertyDescriptor.Name; + + public override Type PropertyType => _basePropertyDescriptor.PropertyType; + + public override TypeConverter Converter => _basePropertyDescriptor.PropertyType == typeof(double) ? new TwoDecimalDoubleConverter() : _basePropertyDescriptor.Converter; + + public override void ResetValue(object component) { - get => ReadOnly; + _basePropertyDescriptor.ResetValue(component); } - public override string Name + public override bool ShouldSerializeValue(object component) { - get => basePropertyDescriptor.Name; + return _basePropertyDescriptor.ShouldSerializeValue(component); } - public override Type PropertyType + public override void SetValue(object component, object value) { - get => basePropertyDescriptor.PropertyType; + _basePropertyDescriptor.SetValue(component, value); } + } - public override void ResetValue(object component) + public class PropertyGridPropertyDescriptor : GlobalizedPropertyDescriptor + { + private readonly PropertyDescriptor _basePropertyDescriptor; + private readonly ResourceManager _resourceManager; + + private string _invariantDisplayName; + private string _category; + + // Since many property grid object setters don't actually change the value, just the document, need to store actual value for display + private object _displayValue; + + public PropertyGridPropertyDescriptor(PropertyDescriptor basePropertyDescriptor, ResourceManager resourceManager) + : base(basePropertyDescriptor, resourceManager) { - basePropertyDescriptor.ResetValue(component); + _basePropertyDescriptor = basePropertyDescriptor; + _resourceManager = resourceManager; } - public override bool ShouldSerializeValue(object component) + public void SetDisplayName(string displayName) { - return basePropertyDescriptor.ShouldSerializeValue(component); + _invariantDisplayName = displayName; + } + + public void SetCategory(string category) + { + _category = category; + } + + public override string DisplayName => _invariantDisplayName ?? _resourceManager?.GetString(_basePropertyDescriptor.Name) ?? _basePropertyDescriptor.Name; + + public override string Category => _category != null ? _resourceManager.GetString(CATEGORY_PREFIX + _category) : base.Category; + + public override object GetValue(object component) + { + return _displayValue ??= _basePropertyDescriptor.GetValue(component) ?? string.Empty; } public override void SetValue(object component, object value) { - basePropertyDescriptor.SetValue(component, value); + _basePropertyDescriptor.SetValue(component, value); + _displayValue = value; } + + public override TypeConverter Converter + { + get + { + if (_basePropertyDescriptor.PropertyType == typeof(double)) + return new TwoDecimalDoubleConverter(); + + if (_basePropertyDescriptor is AnnotationPropertyDescriptor annotationProperty && + annotationProperty.AnnotationDef.Type == AnnotationDef.AnnotationType.value_list) + return new DropDownConverter(annotationProperty.AnnotationDef.Items.ToList()); + + return _basePropertyDescriptor.Converter; + } + } + } + + public class TwoDecimalDoubleConverter : DoubleConverter + { + public override object ConvertTo(ITypeDescriptorContext context, CultureInfo culture, object value, Type destinationType) + { + if (destinationType == typeof(string) && value is double d) + return d.ToString("F2", culture ?? CultureInfo.CurrentCulture); + return base.ConvertTo(context, culture, value, destinationType); + } + } + + public class DropDownConverter : StringConverter + { + private readonly List _options; + + public DropDownConverter(List options) + { + _options = options; + _options.Insert(0, null); // default is no option selected + } + + public override bool GetStandardValuesSupported(ITypeDescriptorContext context) => true; + + public override bool GetStandardValuesExclusive(ITypeDescriptorContext context) => true; + + public override StandardValuesCollection GetStandardValues(ITypeDescriptorContext context) => new StandardValuesCollection(_options); } } diff --git a/pwiz_tools/Skyline/Model/GroupComparison/FoldChangeResult.cs b/pwiz_tools/Skyline/Model/GroupComparison/FoldChangeResult.cs index de40f9fd1a5..1c975b50fda 100644 --- a/pwiz_tools/Skyline/Model/GroupComparison/FoldChangeResult.cs +++ b/pwiz_tools/Skyline/Model/GroupComparison/FoldChangeResult.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/GroupComparison/GroupComparer.cs b/pwiz_tools/Skyline/Model/GroupComparison/GroupComparer.cs index 47f6c8d7dfd..a8e0d7c436d 100644 --- a/pwiz_tools/Skyline/Model/GroupComparison/GroupComparer.cs +++ b/pwiz_tools/Skyline/Model/GroupComparison/GroupComparer.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/GroupComparison/GroupComparisonDef.cs b/pwiz_tools/Skyline/Model/GroupComparison/GroupComparisonDef.cs index a07ce921910..1378d02d9c5 100644 --- a/pwiz_tools/Skyline/Model/GroupComparison/GroupComparisonDef.cs +++ b/pwiz_tools/Skyline/Model/GroupComparison/GroupComparisonDef.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/GroupComparison/GroupComparisonDefList.cs b/pwiz_tools/Skyline/Model/GroupComparison/GroupComparisonDefList.cs index 96f8ceec101..b764cb3f9b5 100644 --- a/pwiz_tools/Skyline/Model/GroupComparison/GroupComparisonDefList.cs +++ b/pwiz_tools/Skyline/Model/GroupComparison/GroupComparisonDefList.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/GroupComparison/GroupComparisonModel.cs b/pwiz_tools/Skyline/Model/GroupComparison/GroupComparisonModel.cs index e5d87e931df..bf875eb3862 100644 --- a/pwiz_tools/Skyline/Model/GroupComparison/GroupComparisonModel.cs +++ b/pwiz_tools/Skyline/Model/GroupComparison/GroupComparisonModel.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/GroupComparison/GroupComparisonResources.designer.cs b/pwiz_tools/Skyline/Model/GroupComparison/GroupComparisonResources.designer.cs index c1f11c1c46a..40e1ab17675 100644 --- a/pwiz_tools/Skyline/Model/GroupComparison/GroupComparisonResources.designer.cs +++ b/pwiz_tools/Skyline/Model/GroupComparison/GroupComparisonResources.designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Model/GroupComparison/GroupComparisonResult.cs b/pwiz_tools/Skyline/Model/GroupComparison/GroupComparisonResult.cs index 21a7600af57..5811218293a 100644 --- a/pwiz_tools/Skyline/Model/GroupComparison/GroupComparisonResult.cs +++ b/pwiz_tools/Skyline/Model/GroupComparison/GroupComparisonResult.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/GroupComparison/GroupComparisonResults.cs b/pwiz_tools/Skyline/Model/GroupComparison/GroupComparisonResults.cs index 4a83998ff6a..ea97173505e 100644 --- a/pwiz_tools/Skyline/Model/GroupComparison/GroupComparisonResults.cs +++ b/pwiz_tools/Skyline/Model/GroupComparison/GroupComparisonResults.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/GroupComparison/GroupComparisonSelector.cs b/pwiz_tools/Skyline/Model/GroupComparison/GroupComparisonSelector.cs index 8959c1fe040..ff7c24c00ef 100644 --- a/pwiz_tools/Skyline/Model/GroupComparison/GroupComparisonSelector.cs +++ b/pwiz_tools/Skyline/Model/GroupComparison/GroupComparisonSelector.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/GroupComparison/GroupComparisonStrings.Designer.cs b/pwiz_tools/Skyline/Model/GroupComparison/GroupComparisonStrings.Designer.cs index d1d93f868ce..684e103068c 100644 --- a/pwiz_tools/Skyline/Model/GroupComparison/GroupComparisonStrings.Designer.cs +++ b/pwiz_tools/Skyline/Model/GroupComparison/GroupComparisonStrings.Designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Model/GroupComparison/GroupIdentifier.cs b/pwiz_tools/Skyline/Model/GroupComparison/GroupIdentifier.cs index 9099f41b741..c14c18ffa24 100644 --- a/pwiz_tools/Skyline/Model/GroupComparison/GroupIdentifier.cs +++ b/pwiz_tools/Skyline/Model/GroupComparison/GroupIdentifier.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/GroupComparison/MatchExpression.cs b/pwiz_tools/Skyline/Model/GroupComparison/MatchExpression.cs index 32c1effb804..a1be900d524 100644 --- a/pwiz_tools/Skyline/Model/GroupComparison/MatchExpression.cs +++ b/pwiz_tools/Skyline/Model/GroupComparison/MatchExpression.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tobias Rohde , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/GroupComparison/MatchRgbHexColor.cs b/pwiz_tools/Skyline/Model/GroupComparison/MatchRgbHexColor.cs index 3768c2ede31..fb832e12d3c 100644 --- a/pwiz_tools/Skyline/Model/GroupComparison/MatchRgbHexColor.cs +++ b/pwiz_tools/Skyline/Model/GroupComparison/MatchRgbHexColor.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tobias Rohde , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/GroupComparison/MsLevelOption.cs b/pwiz_tools/Skyline/Model/GroupComparison/MsLevelOption.cs index 6cf628bb24c..f5dbd6fc456 100644 --- a/pwiz_tools/Skyline/Model/GroupComparison/MsLevelOption.cs +++ b/pwiz_tools/Skyline/Model/GroupComparison/MsLevelOption.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/GroupComparison/NormalizationData.cs b/pwiz_tools/Skyline/Model/GroupComparison/NormalizationData.cs index 66ca9477418..85d023287f2 100644 --- a/pwiz_tools/Skyline/Model/GroupComparison/NormalizationData.cs +++ b/pwiz_tools/Skyline/Model/GroupComparison/NormalizationData.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/GroupComparison/NormalizationMethod.cs b/pwiz_tools/Skyline/Model/GroupComparison/NormalizationMethod.cs index fa45d6fc2d6..e14863363ef 100644 --- a/pwiz_tools/Skyline/Model/GroupComparison/NormalizationMethod.cs +++ b/pwiz_tools/Skyline/Model/GroupComparison/NormalizationMethod.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/GroupComparison/PeptideQuantifier.cs b/pwiz_tools/Skyline/Model/GroupComparison/PeptideQuantifier.cs index 68a4c0c0188..c2206a936e6 100644 --- a/pwiz_tools/Skyline/Model/GroupComparison/PeptideQuantifier.cs +++ b/pwiz_tools/Skyline/Model/GroupComparison/PeptideQuantifier.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections.Generic; using System.Linq; using pwiz.Common.Collections; diff --git a/pwiz_tools/Skyline/Model/GroupComparison/SummarizationMethod.cs b/pwiz_tools/Skyline/Model/GroupComparison/SummarizationMethod.cs index de019c04fcf..2aefc6dc705 100644 --- a/pwiz_tools/Skyline/Model/GroupComparison/SummarizationMethod.cs +++ b/pwiz_tools/Skyline/Model/GroupComparison/SummarizationMethod.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/GroupComparisonRefinementData.cs b/pwiz_tools/Skyline/Model/GroupComparisonRefinementData.cs index 19e116041b5..ba81e9c34a7 100644 --- a/pwiz_tools/Skyline/Model/GroupComparisonRefinementData.cs +++ b/pwiz_tools/Skyline/Model/GroupComparisonRefinementData.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections.Generic; using System.Linq; using pwiz.Common.DataAnalysis; diff --git a/pwiz_tools/Skyline/Model/Hibernate/DbEntity.cs b/pwiz_tools/Skyline/Model/Hibernate/DbEntity.cs index afc97489507..1691944cae1 100644 --- a/pwiz_tools/Skyline/Model/Hibernate/DbEntity.cs +++ b/pwiz_tools/Skyline/Model/Hibernate/DbEntity.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Hibernate/DbPeptide.cs b/pwiz_tools/Skyline/Model/Hibernate/DbPeptide.cs index af6f292322a..731b8f686c9 100644 --- a/pwiz_tools/Skyline/Model/Hibernate/DbPeptide.cs +++ b/pwiz_tools/Skyline/Model/Hibernate/DbPeptide.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Hibernate/DbPeptideResult.cs b/pwiz_tools/Skyline/Model/Hibernate/DbPeptideResult.cs index 16922dbf92a..3f4101fe682 100644 --- a/pwiz_tools/Skyline/Model/Hibernate/DbPeptideResult.cs +++ b/pwiz_tools/Skyline/Model/Hibernate/DbPeptideResult.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Hibernate/DbPrecursor.cs b/pwiz_tools/Skyline/Model/Hibernate/DbPrecursor.cs index 4841eb618fb..b6b35451366 100644 --- a/pwiz_tools/Skyline/Model/Hibernate/DbPrecursor.cs +++ b/pwiz_tools/Skyline/Model/Hibernate/DbPrecursor.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Hibernate/DbPrecursorResult.cs b/pwiz_tools/Skyline/Model/Hibernate/DbPrecursorResult.cs index 53b49d8929a..353b090d297 100644 --- a/pwiz_tools/Skyline/Model/Hibernate/DbPrecursorResult.cs +++ b/pwiz_tools/Skyline/Model/Hibernate/DbPrecursorResult.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Hibernate/DbProtein.cs b/pwiz_tools/Skyline/Model/Hibernate/DbProtein.cs index ce8f574f964..9b7b3588880 100644 --- a/pwiz_tools/Skyline/Model/Hibernate/DbProtein.cs +++ b/pwiz_tools/Skyline/Model/Hibernate/DbProtein.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Hibernate/DbProteinResult.cs b/pwiz_tools/Skyline/Model/Hibernate/DbProteinResult.cs index 12ef8c5f5aa..4de4799ea77 100644 --- a/pwiz_tools/Skyline/Model/Hibernate/DbProteinResult.cs +++ b/pwiz_tools/Skyline/Model/Hibernate/DbProteinResult.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Hibernate/DbRatioResult.cs b/pwiz_tools/Skyline/Model/Hibernate/DbRatioResult.cs index ff15452805f..12131d45b40 100644 --- a/pwiz_tools/Skyline/Model/Hibernate/DbRatioResult.cs +++ b/pwiz_tools/Skyline/Model/Hibernate/DbRatioResult.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Hibernate/DbReplicate.cs b/pwiz_tools/Skyline/Model/Hibernate/DbReplicate.cs index a473cea5027..9786a30a641 100644 --- a/pwiz_tools/Skyline/Model/Hibernate/DbReplicate.cs +++ b/pwiz_tools/Skyline/Model/Hibernate/DbReplicate.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Hibernate/DbResultFile.cs b/pwiz_tools/Skyline/Model/Hibernate/DbResultFile.cs index fd103dd80ff..fcb5c2dc504 100644 --- a/pwiz_tools/Skyline/Model/Hibernate/DbResultFile.cs +++ b/pwiz_tools/Skyline/Model/Hibernate/DbResultFile.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Hibernate/DbTransition.cs b/pwiz_tools/Skyline/Model/Hibernate/DbTransition.cs index 8f79a48dcb3..7c54b89e26b 100644 --- a/pwiz_tools/Skyline/Model/Hibernate/DbTransition.cs +++ b/pwiz_tools/Skyline/Model/Hibernate/DbTransition.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Hibernate/DbTransitionResult.cs b/pwiz_tools/Skyline/Model/Hibernate/DbTransitionResult.cs index f0c5079747f..b162cb00657 100644 --- a/pwiz_tools/Skyline/Model/Hibernate/DbTransitionResult.cs +++ b/pwiz_tools/Skyline/Model/Hibernate/DbTransitionResult.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Hibernate/Formats.cs b/pwiz_tools/Skyline/Model/Hibernate/Formats.cs index ff69cbad4c1..cfb67cca490 100644 --- a/pwiz_tools/Skyline/Model/Hibernate/Formats.cs +++ b/pwiz_tools/Skyline/Model/Hibernate/Formats.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Hibernate/Query/Identifier.cs b/pwiz_tools/Skyline/Model/Hibernate/Query/Identifier.cs index 119393bd865..f6b5b34e3e4 100644 --- a/pwiz_tools/Skyline/Model/Hibernate/Query/Identifier.cs +++ b/pwiz_tools/Skyline/Model/Hibernate/Query/Identifier.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Hibernate/QueryColumn.cs b/pwiz_tools/Skyline/Model/Hibernate/QueryColumn.cs index 2130b9e268e..7dee2bf7056 100644 --- a/pwiz_tools/Skyline/Model/Hibernate/QueryColumn.cs +++ b/pwiz_tools/Skyline/Model/Hibernate/QueryColumn.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Hibernate/RatioPropertyAccessor.cs b/pwiz_tools/Skyline/Model/Hibernate/RatioPropertyAccessor.cs index 6f26185bd97..6281ac1aa09 100644 --- a/pwiz_tools/Skyline/Model/Hibernate/RatioPropertyAccessor.cs +++ b/pwiz_tools/Skyline/Model/Hibernate/RatioPropertyAccessor.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/IdPeptideDocNode.cs b/pwiz_tools/Skyline/Model/IdPeptideDocNode.cs index e2540bb87f6..9e759c5192d 100644 --- a/pwiz_tools/Skyline/Model/IdPeptideDocNode.cs +++ b/pwiz_tools/Skyline/Model/IdPeptideDocNode.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Identity.cs b/pwiz_tools/Skyline/Model/Identity.cs index 3e0a014bf30..899276bb7ac 100644 --- a/pwiz_tools/Skyline/Model/Identity.cs +++ b/pwiz_tools/Skyline/Model/Identity.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Import.cs b/pwiz_tools/Skyline/Model/Import.cs index 09acf105435..05b476acca3 100644 --- a/pwiz_tools/Skyline/Model/Import.cs +++ b/pwiz_tools/Skyline/Model/Import.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/ImportAssayLibrary.cs b/pwiz_tools/Skyline/Model/ImportAssayLibrary.cs index 20a7cf5b1c9..b765397ad75 100644 --- a/pwiz_tools/Skyline/Model/ImportAssayLibrary.cs +++ b/pwiz_tools/Skyline/Model/ImportAssayLibrary.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/ImportPeakBoundaries.cs b/pwiz_tools/Skyline/Model/ImportPeakBoundaries.cs index 35139dcdfbe..675a9e46f6c 100644 --- a/pwiz_tools/Skyline/Model/ImportPeakBoundaries.cs +++ b/pwiz_tools/Skyline/Model/ImportPeakBoundaries.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Dario Amodei , * Mallick Lab, Department of Radiology, Stanford University * diff --git a/pwiz_tools/Skyline/Model/ImportPeptideSearch.cs b/pwiz_tools/Skyline/Model/ImportPeptideSearch.cs index 0a4a4e7e609..9332e2d1992 100644 --- a/pwiz_tools/Skyline/Model/ImportPeptideSearch.cs +++ b/pwiz_tools/Skyline/Model/ImportPeptideSearch.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/IonMobility/DbPrecursorAndIonMobility.cs b/pwiz_tools/Skyline/Model/IonMobility/DbPrecursorAndIonMobility.cs index 3bcf3e8f115..c30e079e88b 100644 --- a/pwiz_tools/Skyline/Model/IonMobility/DbPrecursorAndIonMobility.cs +++ b/pwiz_tools/Skyline/Model/IonMobility/DbPrecursorAndIonMobility.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/IonMobility/IonMobilityDb.cs b/pwiz_tools/Skyline/Model/IonMobility/IonMobilityDb.cs index eb0fb6cc501..ae59037950d 100644 --- a/pwiz_tools/Skyline/Model/IonMobility/IonMobilityDb.cs +++ b/pwiz_tools/Skyline/Model/IonMobility/IonMobilityDb.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/IonMobility/IonMobilityLibrary.cs b/pwiz_tools/Skyline/Model/IonMobility/IonMobilityLibrary.cs index 2256e07e0b0..4b418ea22e1 100644 --- a/pwiz_tools/Skyline/Model/IonMobility/IonMobilityLibrary.cs +++ b/pwiz_tools/Skyline/Model/IonMobility/IonMobilityLibrary.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/IonMobility/IonMobilityLibraryManager.cs b/pwiz_tools/Skyline/Model/IonMobility/IonMobilityLibraryManager.cs index adee64f59f4..1ae99b21f28 100644 --- a/pwiz_tools/Skyline/Model/IonMobility/IonMobilityLibraryManager.cs +++ b/pwiz_tools/Skyline/Model/IonMobility/IonMobilityLibraryManager.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/IonMobility/ValidatingIonMobilityPrecursor.cs b/pwiz_tools/Skyline/Model/IonMobility/ValidatingIonMobilityPrecursor.cs index d77802b0206..bf00cc61aff 100644 --- a/pwiz_tools/Skyline/Model/IonMobility/ValidatingIonMobilityPrecursor.cs +++ b/pwiz_tools/Skyline/Model/IonMobility/ValidatingIonMobilityPrecursor.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/IonMobility/mapping.xml b/pwiz_tools/Skyline/Model/IonMobility/mapping.xml index 319110d0aa8..07bb15df031 100644 --- a/pwiz_tools/Skyline/Model/IonMobility/mapping.xml +++ b/pwiz_tools/Skyline/Model/IonMobility/mapping.xml @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Model/Irt/DbIrtHistory.cs b/pwiz_tools/Skyline/Model/Irt/DbIrtHistory.cs index 4cb7da19627..c2703b8b00f 100644 --- a/pwiz_tools/Skyline/Model/Irt/DbIrtHistory.cs +++ b/pwiz_tools/Skyline/Model/Irt/DbIrtHistory.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Irt/DbIrtPeptide.cs b/pwiz_tools/Skyline/Model/Irt/DbIrtPeptide.cs index fa74e91faa4..dcd64d36f7d 100644 --- a/pwiz_tools/Skyline/Model/Irt/DbIrtPeptide.cs +++ b/pwiz_tools/Skyline/Model/Irt/DbIrtPeptide.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: John Chilton , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Irt/DbVersionInfo.cs b/pwiz_tools/Skyline/Model/Irt/DbVersionInfo.cs index 29636bcf5d8..de4becfdefa 100644 --- a/pwiz_tools/Skyline/Model/Irt/DbVersionInfo.cs +++ b/pwiz_tools/Skyline/Model/Irt/DbVersionInfo.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Irt/IrtDb.cs b/pwiz_tools/Skyline/Model/Irt/IrtDb.cs index e8da40dee60..4198b95d845 100644 --- a/pwiz_tools/Skyline/Model/Irt/IrtDb.cs +++ b/pwiz_tools/Skyline/Model/Irt/IrtDb.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Irt/IrtDbManager.cs b/pwiz_tools/Skyline/Model/Irt/IrtDbManager.cs index 9f775752a4e..bf62720254f 100644 --- a/pwiz_tools/Skyline/Model/Irt/IrtDbManager.cs +++ b/pwiz_tools/Skyline/Model/Irt/IrtDbManager.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Irt/IrtPeptidePicker.cs b/pwiz_tools/Skyline/Model/Irt/IrtPeptidePicker.cs index 083ac089c8a..b837a734461 100644 --- a/pwiz_tools/Skyline/Model/Irt/IrtPeptidePicker.cs +++ b/pwiz_tools/Skyline/Model/Irt/IrtPeptidePicker.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Irt/IrtResources.designer.cs b/pwiz_tools/Skyline/Model/Irt/IrtResources.designer.cs index ffd8d78d871..8b05eecbd92 100644 --- a/pwiz_tools/Skyline/Model/Irt/IrtResources.designer.cs +++ b/pwiz_tools/Skyline/Model/Irt/IrtResources.designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Model/Irt/IrtStandard.cs b/pwiz_tools/Skyline/Model/Irt/IrtStandard.cs index 0103d8d4cfb..06d895bbb05 100644 --- a/pwiz_tools/Skyline/Model/Irt/IrtStandard.cs +++ b/pwiz_tools/Skyline/Model/Irt/IrtStandard.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections.Generic; using System.IO; using System.Linq; diff --git a/pwiz_tools/Skyline/Model/Irt/RCalcIrt.cs b/pwiz_tools/Skyline/Model/Irt/RCalcIrt.cs index 43f62fc0a5b..02e08ab4c16 100644 --- a/pwiz_tools/Skyline/Model/Irt/RCalcIrt.cs +++ b/pwiz_tools/Skyline/Model/Irt/RCalcIrt.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: John Chilton , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Irt/Regression.cs b/pwiz_tools/Skyline/Model/Irt/Regression.cs index a468cf968d9..06d4e3479c9 100644 --- a/pwiz_tools/Skyline/Model/Irt/Regression.cs +++ b/pwiz_tools/Skyline/Model/Irt/Regression.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/APOA1.sky b/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/APOA1.sky index 75938f569cb..36d8669d2ae 100644 --- a/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/APOA1.sky +++ b/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/APOA1.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/Biognosys10.sky b/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/Biognosys10.sky index a3c6a1c4401..c6142ae05c7 100644 --- a/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/Biognosys10.sky +++ b/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/Biognosys10.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/Biognosys11.sky b/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/Biognosys11.sky index 88764b21b51..10d68052162 100644 --- a/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/Biognosys11.sky +++ b/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/Biognosys11.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/CiRT.sky b/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/CiRT.sky index 6764ff3cc64..3eebe515d62 100644 --- a/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/CiRT.sky +++ b/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/CiRT.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/CiRT_all.sky b/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/CiRT_all.sky index 85c0f681b65..6b01024e870 100644 --- a/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/CiRT_all.sky +++ b/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/CiRT_all.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/Pierce.sky b/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/Pierce.sky index b328213986f..2ac843f3594 100644 --- a/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/Pierce.sky +++ b/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/Pierce.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/RTBEADS.sky b/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/RTBEADS.sky index 14472d402fd..d039ce959e0 100644 --- a/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/RTBEADS.sky +++ b/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/RTBEADS.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/RePLiCal.sky b/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/RePLiCal.sky index bcd7d859dd6..8a05f74a1bf 100644 --- a/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/RePLiCal.sky +++ b/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/RePLiCal.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/Sciex.sky b/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/Sciex.sky index 4b65a64c274..81125c5bc9b 100644 --- a/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/Sciex.sky +++ b/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/Sciex.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/Sigma.sky b/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/Sigma.sky index 48e17d0b6f0..701281ab3a9 100644 --- a/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/Sigma.sky +++ b/pwiz_tools/Skyline/Model/Irt/StandardsDocuments/Sigma.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Model/Irt/mapping.xml b/pwiz_tools/Skyline/Model/Irt/mapping.xml index 2b8f09c33b0..0fc84a2c077 100644 --- a/pwiz_tools/Skyline/Model/Irt/mapping.xml +++ b/pwiz_tools/Skyline/Model/Irt/mapping.xml @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Model/IsolationSchemeReader.cs b/pwiz_tools/Skyline/Model/IsolationSchemeReader.cs index 5691c6c5c5d..32c757bcdcc 100644 --- a/pwiz_tools/Skyline/Model/IsolationSchemeReader.cs +++ b/pwiz_tools/Skyline/Model/IsolationSchemeReader.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/IsotopeLabelType.cs b/pwiz_tools/Skyline/Model/IsotopeLabelType.cs index 00245f95c74..f194ed45801 100644 --- a/pwiz_tools/Skyline/Model/IsotopeLabelType.cs +++ b/pwiz_tools/Skyline/Model/IsotopeLabelType.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/IsotopeModificationPermuter.cs b/pwiz_tools/Skyline/Model/IsotopeModificationPermuter.cs index 0d48887576d..6ffbafa8f33 100644 --- a/pwiz_tools/Skyline/Model/IsotopeModificationPermuter.cs +++ b/pwiz_tools/Skyline/Model/IsotopeModificationPermuter.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Koina/Communication/KoinaPredictionClient.cs b/pwiz_tools/Skyline/Model/Koina/Communication/KoinaPredictionClient.cs index 32f2c58c625..8fc75d39323 100644 --- a/pwiz_tools/Skyline/Model/Koina/Communication/KoinaPredictionClient.cs +++ b/pwiz_tools/Skyline/Model/Koina/Communication/KoinaPredictionClient.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tobias Rohde , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Koina/Config/KoinaConfig.cs b/pwiz_tools/Skyline/Model/Koina/Config/KoinaConfig.cs index 0e8cd5c8e80..5abc756ac09 100644 --- a/pwiz_tools/Skyline/Model/Koina/Config/KoinaConfig.cs +++ b/pwiz_tools/Skyline/Model/Koina/Config/KoinaConfig.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Koina/KoinaConstants.cs b/pwiz_tools/Skyline/Model/Koina/KoinaConstants.cs index ea05280c017..001d1785b61 100644 --- a/pwiz_tools/Skyline/Model/Koina/KoinaConstants.cs +++ b/pwiz_tools/Skyline/Model/Koina/KoinaConstants.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tobias Rohde , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Koina/KoinaExceptions.cs b/pwiz_tools/Skyline/Model/Koina/KoinaExceptions.cs index 69c02fd0cc4..f7c24a7d00f 100644 --- a/pwiz_tools/Skyline/Model/Koina/KoinaExceptions.cs +++ b/pwiz_tools/Skyline/Model/Koina/KoinaExceptions.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tobias Rohde , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Koina/KoinaLibraryBuilder.cs b/pwiz_tools/Skyline/Model/Koina/KoinaLibraryBuilder.cs index 509fe214011..cec807e941e 100644 --- a/pwiz_tools/Skyline/Model/Koina/KoinaLibraryBuilder.cs +++ b/pwiz_tools/Skyline/Model/Koina/KoinaLibraryBuilder.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tobias Rohde , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Koina/KoinaMS2Spectra.cs b/pwiz_tools/Skyline/Model/Koina/KoinaMS2Spectra.cs index aac927a658a..537652c0dad 100644 --- a/pwiz_tools/Skyline/Model/Koina/KoinaMS2Spectra.cs +++ b/pwiz_tools/Skyline/Model/Koina/KoinaMS2Spectra.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tobias Rohde , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Koina/KoinaResources.Designer.cs b/pwiz_tools/Skyline/Model/Koina/KoinaResources.Designer.cs index 0dd2d8fb268..12351848e7d 100644 --- a/pwiz_tools/Skyline/Model/Koina/KoinaResources.Designer.cs +++ b/pwiz_tools/Skyline/Model/Koina/KoinaResources.Designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Model/Koina/KoinaRetentionScoreCalculator.cs b/pwiz_tools/Skyline/Model/Koina/KoinaRetentionScoreCalculator.cs index 5536d0f26af..d10f4018951 100644 --- a/pwiz_tools/Skyline/Model/Koina/KoinaRetentionScoreCalculator.cs +++ b/pwiz_tools/Skyline/Model/Koina/KoinaRetentionScoreCalculator.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tobias Rohde , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Koina/Models/KoinaIntensityModel.cs b/pwiz_tools/Skyline/Model/Koina/Models/KoinaIntensityModel.cs index 14d20673330..7c1c688b948 100644 --- a/pwiz_tools/Skyline/Model/Koina/Models/KoinaIntensityModel.cs +++ b/pwiz_tools/Skyline/Model/Koina/Models/KoinaIntensityModel.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tobias Rohde , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Koina/Models/KoinaModel.cs b/pwiz_tools/Skyline/Model/Koina/Models/KoinaModel.cs index a51d0e882d3..5e913bd5edd 100644 --- a/pwiz_tools/Skyline/Model/Koina/Models/KoinaModel.cs +++ b/pwiz_tools/Skyline/Model/Koina/Models/KoinaModel.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tobias Rohde , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Koina/Models/KoinaRetentionTimeModel.cs b/pwiz_tools/Skyline/Model/Koina/Models/KoinaRetentionTimeModel.cs index a64d18bac65..d0fdd00286f 100644 --- a/pwiz_tools/Skyline/Model/Koina/Models/KoinaRetentionTimeModel.cs +++ b/pwiz_tools/Skyline/Model/Koina/Models/KoinaRetentionTimeModel.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tobias Rohde , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Koina/Models/ModelsResources.designer.cs b/pwiz_tools/Skyline/Model/Koina/Models/ModelsResources.designer.cs index c2c6ad808df..fc2498e792f 100644 --- a/pwiz_tools/Skyline/Model/Koina/Models/ModelsResources.designer.cs +++ b/pwiz_tools/Skyline/Model/Koina/Models/ModelsResources.designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Model/LegacyCrosslinkConverter.cs b/pwiz_tools/Skyline/Model/LegacyCrosslinkConverter.cs index fe1bab79f76..f975d560f91 100644 --- a/pwiz_tools/Skyline/Model/LegacyCrosslinkConverter.cs +++ b/pwiz_tools/Skyline/Model/LegacyCrosslinkConverter.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/AlignedRetentionTimes.cs b/pwiz_tools/Skyline/Model/Lib/AlignedRetentionTimes.cs index c775f2a2029..39f03a9b71d 100644 --- a/pwiz_tools/Skyline/Model/Lib/AlignedRetentionTimes.cs +++ b/pwiz_tools/Skyline/Model/Lib/AlignedRetentionTimes.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/AlphaPeptDeep/AbstractDeepLibraryBuilder.cs b/pwiz_tools/Skyline/Model/Lib/AlphaPeptDeep/AbstractDeepLibraryBuilder.cs index db134268c66..f21042075d9 100644 --- a/pwiz_tools/Skyline/Model/Lib/AlphaPeptDeep/AbstractDeepLibraryBuilder.cs +++ b/pwiz_tools/Skyline/Model/Lib/AlphaPeptDeep/AbstractDeepLibraryBuilder.cs @@ -1,4 +1,4 @@ -/* +/* * Author: David Shteynberg , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/AlphaPeptDeep/AlphapeptdeepLibraryBuilder.cs b/pwiz_tools/Skyline/Model/Lib/AlphaPeptDeep/AlphapeptdeepLibraryBuilder.cs index bf7f8fea444..ca517918c98 100644 --- a/pwiz_tools/Skyline/Model/Lib/AlphaPeptDeep/AlphapeptdeepLibraryBuilder.cs +++ b/pwiz_tools/Skyline/Model/Lib/AlphaPeptDeep/AlphapeptdeepLibraryBuilder.cs @@ -1,4 +1,4 @@ -/* +/* * Author: David Shteynberg , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/BiblioSpec.cs b/pwiz_tools/Skyline/Model/Lib/BiblioSpec.cs index 75035851760..459e6205f91 100644 --- a/pwiz_tools/Skyline/Model/Lib/BiblioSpec.cs +++ b/pwiz_tools/Skyline/Model/Lib/BiblioSpec.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/BiblioSpecLite.cs b/pwiz_tools/Skyline/Model/Lib/BiblioSpecLite.cs index 7d465526dda..2f801b681aa 100644 --- a/pwiz_tools/Skyline/Model/Lib/BiblioSpecLite.cs +++ b/pwiz_tools/Skyline/Model/Lib/BiblioSpecLite.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/BiblioSpecLiteBuilder.cs b/pwiz_tools/Skyline/Model/Lib/BiblioSpecLiteBuilder.cs index 906785b870e..7d5e36ff7d6 100644 --- a/pwiz_tools/Skyline/Model/Lib/BiblioSpecLiteBuilder.cs +++ b/pwiz_tools/Skyline/Model/Lib/BiblioSpecLiteBuilder.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/BlibData/BlibDb.cs b/pwiz_tools/Skyline/Model/Lib/BlibData/BlibDb.cs index 90f5f4cb5e4..7005db167f1 100644 --- a/pwiz_tools/Skyline/Model/Lib/BlibData/BlibDb.cs +++ b/pwiz_tools/Skyline/Model/Lib/BlibData/BlibDb.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/BlibData/BlibSessionFactoryFactory.cs b/pwiz_tools/Skyline/Model/Lib/BlibData/BlibSessionFactoryFactory.cs index 72439ca4156..18ba7c2cc36 100644 --- a/pwiz_tools/Skyline/Model/Lib/BlibData/BlibSessionFactoryFactory.cs +++ b/pwiz_tools/Skyline/Model/Lib/BlibData/BlibSessionFactoryFactory.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/BlibData/DbEntity.cs b/pwiz_tools/Skyline/Model/Lib/BlibData/DbEntity.cs index b4724a655c5..54af02278b9 100644 --- a/pwiz_tools/Skyline/Model/Lib/BlibData/DbEntity.cs +++ b/pwiz_tools/Skyline/Model/Lib/BlibData/DbEntity.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/BlibData/DbLibInfo.cs b/pwiz_tools/Skyline/Model/Lib/BlibData/DbLibInfo.cs index 07bf71dae6c..dabc5dc4868 100644 --- a/pwiz_tools/Skyline/Model/Lib/BlibData/DbLibInfo.cs +++ b/pwiz_tools/Skyline/Model/Lib/BlibData/DbLibInfo.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/BlibData/DbModification.cs b/pwiz_tools/Skyline/Model/Lib/BlibData/DbModification.cs index c37fa466019..a09a9cf13dd 100644 --- a/pwiz_tools/Skyline/Model/Lib/BlibData/DbModification.cs +++ b/pwiz_tools/Skyline/Model/Lib/BlibData/DbModification.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/BlibData/DbModificationRedundant.cs b/pwiz_tools/Skyline/Model/Lib/BlibData/DbModificationRedundant.cs index 02a475900b7..5b452b558cc 100644 --- a/pwiz_tools/Skyline/Model/Lib/BlibData/DbModificationRedundant.cs +++ b/pwiz_tools/Skyline/Model/Lib/BlibData/DbModificationRedundant.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/BlibData/DbRefSpectra.cs b/pwiz_tools/Skyline/Model/Lib/BlibData/DbRefSpectra.cs index e52d850266e..a9f8193e25e 100644 --- a/pwiz_tools/Skyline/Model/Lib/BlibData/DbRefSpectra.cs +++ b/pwiz_tools/Skyline/Model/Lib/BlibData/DbRefSpectra.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/BlibData/DbRefSpectraPeaks.cs b/pwiz_tools/Skyline/Model/Lib/BlibData/DbRefSpectraPeaks.cs index fcf0c62c57d..b04d6597db1 100644 --- a/pwiz_tools/Skyline/Model/Lib/BlibData/DbRefSpectraPeaks.cs +++ b/pwiz_tools/Skyline/Model/Lib/BlibData/DbRefSpectraPeaks.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/BlibData/DbRefSpectraRedundant.cs b/pwiz_tools/Skyline/Model/Lib/BlibData/DbRefSpectraRedundant.cs index a317db150e2..3ee8bd98662 100644 --- a/pwiz_tools/Skyline/Model/Lib/BlibData/DbRefSpectraRedundant.cs +++ b/pwiz_tools/Skyline/Model/Lib/BlibData/DbRefSpectraRedundant.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/BlibData/DbRefSpectraRedundantPeaks.cs b/pwiz_tools/Skyline/Model/Lib/BlibData/DbRefSpectraRedundantPeaks.cs index b4201b0c0df..11f48e47478 100644 --- a/pwiz_tools/Skyline/Model/Lib/BlibData/DbRefSpectraRedundantPeaks.cs +++ b/pwiz_tools/Skyline/Model/Lib/BlibData/DbRefSpectraRedundantPeaks.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/BlibData/mapping.xml b/pwiz_tools/Skyline/Model/Lib/BlibData/mapping.xml index 72a4a1bf740..130e2939568 100644 --- a/pwiz_tools/Skyline/Model/Lib/BlibData/mapping.xml +++ b/pwiz_tools/Skyline/Model/Lib/BlibData/mapping.xml @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Model/Lib/BlibData/mapping_redundant.xml b/pwiz_tools/Skyline/Model/Lib/BlibData/mapping_redundant.xml index 3c6b8cae8bb..39abee74d9d 100644 --- a/pwiz_tools/Skyline/Model/Lib/BlibData/mapping_redundant.xml +++ b/pwiz_tools/Skyline/Model/Lib/BlibData/mapping_redundant.xml @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Model/Lib/Carafe/CarafeLibraryBuilder.cs b/pwiz_tools/Skyline/Model/Lib/Carafe/CarafeLibraryBuilder.cs index 8fce7a6cdcb..0ad2756529e 100644 --- a/pwiz_tools/Skyline/Model/Lib/Carafe/CarafeLibraryBuilder.cs +++ b/pwiz_tools/Skyline/Model/Lib/Carafe/CarafeLibraryBuilder.cs @@ -1,4 +1,4 @@ -/* +/* * Author: David Shteynberg , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/ChromLib/ChromLibSpectrumHeaderInfo.cs b/pwiz_tools/Skyline/Model/Lib/ChromLib/ChromLibSpectrumHeaderInfo.cs index f90c818e7b5..3aaa8d1bfd7 100644 --- a/pwiz_tools/Skyline/Model/Lib/ChromLib/ChromLibSpectrumHeaderInfo.cs +++ b/pwiz_tools/Skyline/Model/Lib/ChromLib/ChromLibSpectrumHeaderInfo.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/ChromLib/ChromLibSpectrumInfo.cs b/pwiz_tools/Skyline/Model/Lib/ChromLib/ChromLibSpectrumInfo.cs index afc5113a566..854cd36da51 100644 --- a/pwiz_tools/Skyline/Model/Lib/ChromLib/ChromLibSpectrumInfo.cs +++ b/pwiz_tools/Skyline/Model/Lib/ChromLib/ChromLibSpectrumInfo.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/ChromLib/ChromatogramLibrary.cs b/pwiz_tools/Skyline/Model/Lib/ChromLib/ChromatogramLibrary.cs index a47f9cb2471..1cb5d149bb2 100644 --- a/pwiz_tools/Skyline/Model/Lib/ChromLib/ChromatogramLibrary.cs +++ b/pwiz_tools/Skyline/Model/Lib/ChromLib/ChromatogramLibrary.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/ChromLib/ChromatogramLibrarySpec.cs b/pwiz_tools/Skyline/Model/Lib/ChromLib/ChromatogramLibrarySpec.cs index 6eb9268e1e6..6ae74792a98 100644 --- a/pwiz_tools/Skyline/Model/Lib/ChromLib/ChromatogramLibrarySpec.cs +++ b/pwiz_tools/Skyline/Model/Lib/ChromLib/ChromatogramLibrarySpec.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/ChromLibEntity.cs b/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/ChromLibEntity.cs index d35e038932d..e5179666c25 100644 --- a/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/ChromLibEntity.cs +++ b/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/ChromLibEntity.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/IrtLibrary.cs b/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/IrtLibrary.cs index 4508cf290af..9c4bc5dc8bb 100644 --- a/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/IrtLibrary.cs +++ b/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/IrtLibrary.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/IsotopeModification.cs b/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/IsotopeModification.cs index ee2e602a0dd..e2c29b051e2 100644 --- a/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/IsotopeModification.cs +++ b/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/IsotopeModification.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/Peptide.cs b/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/Peptide.cs index 04c97df2693..d09c5317054 100644 --- a/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/Peptide.cs +++ b/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/Peptide.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/Precursor.cs b/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/Precursor.cs index 423ebb3a80c..93702a48147 100644 --- a/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/Precursor.cs +++ b/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/Precursor.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/PrecursorRetentionTime.cs b/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/PrecursorRetentionTime.cs index 47a7ab745e6..84c041e2c86 100644 --- a/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/PrecursorRetentionTime.cs +++ b/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/PrecursorRetentionTime.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/Protein.cs b/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/Protein.cs index 9c490e69a03..651930fe5d2 100644 --- a/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/Protein.cs +++ b/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/Protein.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/SampleFile.cs b/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/SampleFile.cs index 27bd4015aa6..a8a4718a081 100644 --- a/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/SampleFile.cs +++ b/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/SampleFile.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/Transition.cs b/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/Transition.cs index d71a32977ce..dd2f36d51c7 100644 --- a/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/Transition.cs +++ b/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/Transition.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/mapping.xml b/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/mapping.xml index 5119b3a8214..6ab10c4f965 100644 --- a/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/mapping.xml +++ b/pwiz_tools/Skyline/Model/Lib/ChromLib/Data/mapping.xml @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Model/Lib/EncyclopeDiaHelpers.cs b/pwiz_tools/Skyline/Model/Lib/EncyclopeDiaHelpers.cs index ec62fb6cfd5..28eb35b5cbf 100644 --- a/pwiz_tools/Skyline/Model/Lib/EncyclopeDiaHelpers.cs +++ b/pwiz_tools/Skyline/Model/Lib/EncyclopeDiaHelpers.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2022 University of Washington - Seattle, WA diff --git a/pwiz_tools/Skyline/Model/Lib/EncylopeDiaLibrary.cs b/pwiz_tools/Skyline/Model/Lib/EncylopeDiaLibrary.cs index 6753f198033..49fb6e8e3fc 100644 --- a/pwiz_tools/Skyline/Model/Lib/EncylopeDiaLibrary.cs +++ b/pwiz_tools/Skyline/Model/Lib/EncylopeDiaLibrary.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/ExplicitPeakBounds.cs b/pwiz_tools/Skyline/Model/Lib/ExplicitPeakBounds.cs index c740efca10c..8eb4171f031 100644 --- a/pwiz_tools/Skyline/Model/Lib/ExplicitPeakBounds.cs +++ b/pwiz_tools/Skyline/Model/Lib/ExplicitPeakBounds.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/LibKeyIndex.cs b/pwiz_tools/Skyline/Model/Lib/LibKeyIndex.cs index e7047037b26..a229a830378 100644 --- a/pwiz_tools/Skyline/Model/Lib/LibKeyIndex.cs +++ b/pwiz_tools/Skyline/Model/Lib/LibKeyIndex.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/LibKeyMap.cs b/pwiz_tools/Skyline/Model/Lib/LibKeyMap.cs index def68410ab0..eb4df362f86 100644 --- a/pwiz_tools/Skyline/Model/Lib/LibKeyMap.cs +++ b/pwiz_tools/Skyline/Model/Lib/LibKeyMap.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/LibResources.designer.cs b/pwiz_tools/Skyline/Model/Lib/LibResources.designer.cs index c0bb872eecb..606cdd58009 100644 --- a/pwiz_tools/Skyline/Model/Lib/LibResources.designer.cs +++ b/pwiz_tools/Skyline/Model/Lib/LibResources.designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Model/Lib/Library.cs b/pwiz_tools/Skyline/Model/Lib/Library.cs index ee0379b5ba2..9088973e052 100644 --- a/pwiz_tools/Skyline/Model/Lib/Library.cs +++ b/pwiz_tools/Skyline/Model/Lib/Library.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/LibraryFiles.cs b/pwiz_tools/Skyline/Model/Lib/LibraryFiles.cs index 4255e8b06b5..0c11dc73f7e 100644 --- a/pwiz_tools/Skyline/Model/Lib/LibraryFiles.cs +++ b/pwiz_tools/Skyline/Model/Lib/LibraryFiles.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/LibraryKey.cs b/pwiz_tools/Skyline/Model/Lib/LibraryKey.cs index 8c03a98f383..0e786e48e05 100644 --- a/pwiz_tools/Skyline/Model/Lib/LibraryKey.cs +++ b/pwiz_tools/Skyline/Model/Lib/LibraryKey.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/LibraryRankedSpectrumInfo.cs b/pwiz_tools/Skyline/Model/Lib/LibraryRankedSpectrumInfo.cs index a66115e19bf..3cc98cc26cd 100644 --- a/pwiz_tools/Skyline/Model/Lib/LibraryRankedSpectrumInfo.cs +++ b/pwiz_tools/Skyline/Model/Lib/LibraryRankedSpectrumInfo.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/Midas/DbLibInfo.cs b/pwiz_tools/Skyline/Model/Lib/Midas/DbLibInfo.cs index 68e78604abe..b9f8b88337a 100644 --- a/pwiz_tools/Skyline/Model/Lib/Midas/DbLibInfo.cs +++ b/pwiz_tools/Skyline/Model/Lib/Midas/DbLibInfo.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/Midas/DbResultsFile.cs b/pwiz_tools/Skyline/Model/Lib/Midas/DbResultsFile.cs index eb39feea352..6b1d2f85df0 100644 --- a/pwiz_tools/Skyline/Model/Lib/Midas/DbResultsFile.cs +++ b/pwiz_tools/Skyline/Model/Lib/Midas/DbResultsFile.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/Midas/DbSpectrum.cs b/pwiz_tools/Skyline/Model/Lib/Midas/DbSpectrum.cs index 31787d9da75..52a7c7018b9 100644 --- a/pwiz_tools/Skyline/Model/Lib/Midas/DbSpectrum.cs +++ b/pwiz_tools/Skyline/Model/Lib/Midas/DbSpectrum.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/Midas/MidasBlibBuilder.cs b/pwiz_tools/Skyline/Model/Lib/Midas/MidasBlibBuilder.cs index a9fb77049ac..e0c1116a78f 100644 --- a/pwiz_tools/Skyline/Model/Lib/Midas/MidasBlibBuilder.cs +++ b/pwiz_tools/Skyline/Model/Lib/Midas/MidasBlibBuilder.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/Midas/MidasLibSpec.cs b/pwiz_tools/Skyline/Model/Lib/Midas/MidasLibSpec.cs index a961fa70feb..1dd23e8ba51 100644 --- a/pwiz_tools/Skyline/Model/Lib/Midas/MidasLibSpec.cs +++ b/pwiz_tools/Skyline/Model/Lib/Midas/MidasLibSpec.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/Midas/MidasLibrary.cs b/pwiz_tools/Skyline/Model/Lib/Midas/MidasLibrary.cs index 77b6e74bffd..98ce7112763 100644 --- a/pwiz_tools/Skyline/Model/Lib/Midas/MidasLibrary.cs +++ b/pwiz_tools/Skyline/Model/Lib/Midas/MidasLibrary.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/Midas/mapping.xml b/pwiz_tools/Skyline/Model/Lib/Midas/mapping.xml index 5978f31ac08..e1a570aea19 100644 --- a/pwiz_tools/Skyline/Model/Lib/Midas/mapping.xml +++ b/pwiz_tools/Skyline/Model/Lib/Midas/mapping.xml @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Model/Lib/NistLibSpec.cs b/pwiz_tools/Skyline/Model/Lib/NistLibSpec.cs index 56751fbee51..11cf8dd092d 100644 --- a/pwiz_tools/Skyline/Model/Lib/NistLibSpec.cs +++ b/pwiz_tools/Skyline/Model/Lib/NistLibSpec.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/SpectralLibraryExporter.cs b/pwiz_tools/Skyline/Model/Lib/SpectralLibraryExporter.cs index 8fc1f5866c3..a04fa035810 100644 --- a/pwiz_tools/Skyline/Model/Lib/SpectralLibraryExporter.cs +++ b/pwiz_tools/Skyline/Model/Lib/SpectralLibraryExporter.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/SpectrastSpec.cs b/pwiz_tools/Skyline/Model/Lib/SpectrastSpec.cs index b545b3d9a1a..2da16604f76 100644 --- a/pwiz_tools/Skyline/Model/Lib/SpectrastSpec.cs +++ b/pwiz_tools/Skyline/Model/Lib/SpectrastSpec.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/SpectrumPeakAnnotation.cs b/pwiz_tools/Skyline/Model/Lib/SpectrumPeakAnnotation.cs index 2cce92d65aa..17a303ecd89 100644 --- a/pwiz_tools/Skyline/Model/Lib/SpectrumPeakAnnotation.cs +++ b/pwiz_tools/Skyline/Model/Lib/SpectrumPeakAnnotation.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/SpectrumRanker.cs b/pwiz_tools/Skyline/Model/Lib/SpectrumRanker.cs index ad4f013aa1b..d6bc6ebd760 100644 --- a/pwiz_tools/Skyline/Model/Lib/SpectrumRanker.cs +++ b/pwiz_tools/Skyline/Model/Lib/SpectrumRanker.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lib/XHunterSpec.cs b/pwiz_tools/Skyline/Model/Lib/XHunterSpec.cs index c93f9c5659d..b50b797a726 100644 --- a/pwiz_tools/Skyline/Model/Lib/XHunterSpec.cs +++ b/pwiz_tools/Skyline/Model/Lib/XHunterSpec.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/LibKeyModificationMatcher.cs b/pwiz_tools/Skyline/Model/LibKeyModificationMatcher.cs index 1e5654197cb..8e62c6b2c6d 100644 --- a/pwiz_tools/Skyline/Model/LibKeyModificationMatcher.cs +++ b/pwiz_tools/Skyline/Model/LibKeyModificationMatcher.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Alana Killeen , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lists/ColumnData.cs b/pwiz_tools/Skyline/Model/Lists/ColumnData.cs index 6acd9f63fa5..969aa8b2bdc 100644 --- a/pwiz_tools/Skyline/Model/Lists/ColumnData.cs +++ b/pwiz_tools/Skyline/Model/Lists/ColumnData.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lists/ListData.cs b/pwiz_tools/Skyline/Model/Lists/ListData.cs index af5bbb1cbda..13585a8d8e4 100644 --- a/pwiz_tools/Skyline/Model/Lists/ListData.cs +++ b/pwiz_tools/Skyline/Model/Lists/ListData.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lists/ListDef.cs b/pwiz_tools/Skyline/Model/Lists/ListDef.cs index b450aeedc90..3db4167f319 100644 --- a/pwiz_tools/Skyline/Model/Lists/ListDef.cs +++ b/pwiz_tools/Skyline/Model/Lists/ListDef.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lists/ListExceptionDetail.cs b/pwiz_tools/Skyline/Model/Lists/ListExceptionDetail.cs index 7080d51cbf4..39cebfb9f15 100644 --- a/pwiz_tools/Skyline/Model/Lists/ListExceptionDetail.cs +++ b/pwiz_tools/Skyline/Model/Lists/ListExceptionDetail.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lists/ListItem.cs b/pwiz_tools/Skyline/Model/Lists/ListItem.cs index 6b7c7c2326c..78e0d982f28 100644 --- a/pwiz_tools/Skyline/Model/Lists/ListItem.cs +++ b/pwiz_tools/Skyline/Model/Lists/ListItem.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lists/ListItemId.cs b/pwiz_tools/Skyline/Model/Lists/ListItemId.cs index 9fdd6ea917e..79214493bcb 100644 --- a/pwiz_tools/Skyline/Model/Lists/ListItemId.cs +++ b/pwiz_tools/Skyline/Model/Lists/ListItemId.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lists/ListItemTypes.cs b/pwiz_tools/Skyline/Model/Lists/ListItemTypes.cs index 9def1bdc1ff..c1af58201f3 100644 --- a/pwiz_tools/Skyline/Model/Lists/ListItemTypes.cs +++ b/pwiz_tools/Skyline/Model/Lists/ListItemTypes.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lists/ListRowSource.cs b/pwiz_tools/Skyline/Model/Lists/ListRowSource.cs index 71253f38c15..c491800783c 100644 --- a/pwiz_tools/Skyline/Model/Lists/ListRowSource.cs +++ b/pwiz_tools/Skyline/Model/Lists/ListRowSource.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Lists/ListsResources.designer.cs b/pwiz_tools/Skyline/Model/Lists/ListsResources.designer.cs index 665d7ae931c..d40cac1b827 100644 --- a/pwiz_tools/Skyline/Model/Lists/ListsResources.designer.cs +++ b/pwiz_tools/Skyline/Model/Lists/ListsResources.designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Model/MProphetResultsHandler.cs b/pwiz_tools/Skyline/Model/MProphetResultsHandler.cs index ac3e8426347..162b0b5335d 100644 --- a/pwiz_tools/Skyline/Model/MProphetResultsHandler.cs +++ b/pwiz_tools/Skyline/Model/MProphetResultsHandler.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Dario Amodei , * Mallick Lab, Department of Radiology, Stanford * diff --git a/pwiz_tools/Skyline/Model/MassModification.cs b/pwiz_tools/Skyline/Model/MassModification.cs index 41999e9e4e2..f7863d14fdd 100644 --- a/pwiz_tools/Skyline/Model/MassModification.cs +++ b/pwiz_tools/Skyline/Model/MassModification.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/MemoryDocumentContainer.cs b/pwiz_tools/Skyline/Model/MemoryDocumentContainer.cs index 56da10ea65a..1c8e06ba748 100644 --- a/pwiz_tools/Skyline/Model/MemoryDocumentContainer.cs +++ b/pwiz_tools/Skyline/Model/MemoryDocumentContainer.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/MinimizeResults.cs b/pwiz_tools/Skyline/Model/MinimizeResults.cs index 3f3370f018f..77fce5f6d24 100644 --- a/pwiz_tools/Skyline/Model/MinimizeResults.cs +++ b/pwiz_tools/Skyline/Model/MinimizeResults.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.IO; using pwiz.Common.SystemUtil; using pwiz.Skyline.Model.Results; diff --git a/pwiz_tools/Skyline/Model/ModelResources.designer.cs b/pwiz_tools/Skyline/Model/ModelResources.designer.cs index 3c89f3b7316..bdefa7d37ff 100644 --- a/pwiz_tools/Skyline/Model/ModelResources.designer.cs +++ b/pwiz_tools/Skyline/Model/ModelResources.designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Model/ModificationMatcher.cs b/pwiz_tools/Skyline/Model/ModificationMatcher.cs index 09364ee0add..e70322d004f 100644 --- a/pwiz_tools/Skyline/Model/ModificationMatcher.cs +++ b/pwiz_tools/Skyline/Model/ModificationMatcher.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Alana Killeen , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/ModifiedSequence.cs b/pwiz_tools/Skyline/Model/ModifiedSequence.cs index 045025f41e2..57f5ab3d4cb 100644 --- a/pwiz_tools/Skyline/Model/ModifiedSequence.cs +++ b/pwiz_tools/Skyline/Model/ModifiedSequence.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/MoleculeNameAndAccessions.cs b/pwiz_tools/Skyline/Model/MoleculeNameAndAccessions.cs index 5d3471d4fc3..99c2d043875 100644 --- a/pwiz_tools/Skyline/Model/MoleculeNameAndAccessions.cs +++ b/pwiz_tools/Skyline/Model/MoleculeNameAndAccessions.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/MultiFileLoader.cs b/pwiz_tools/Skyline/Model/MultiFileLoader.cs index 19fcd6b8234..1297bbb8d6a 100644 --- a/pwiz_tools/Skyline/Model/MultiFileLoader.cs +++ b/pwiz_tools/Skyline/Model/MultiFileLoader.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/MultiProgressStatus.cs b/pwiz_tools/Skyline/Model/MultiProgressStatus.cs index 4f6e176563b..a7a03ce0a25 100644 --- a/pwiz_tools/Skyline/Model/MultiProgressStatus.cs +++ b/pwiz_tools/Skyline/Model/MultiProgressStatus.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Optimization/DbOptimization.cs b/pwiz_tools/Skyline/Model/Optimization/DbOptimization.cs index bb0564fbfa0..0d9e0ad0c33 100644 --- a/pwiz_tools/Skyline/Model/Optimization/DbOptimization.cs +++ b/pwiz_tools/Skyline/Model/Optimization/DbOptimization.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Optimization/DbVersionInfo.cs b/pwiz_tools/Skyline/Model/Optimization/DbVersionInfo.cs index ee4292d27ef..b5a5b0327df 100644 --- a/pwiz_tools/Skyline/Model/Optimization/DbVersionInfo.cs +++ b/pwiz_tools/Skyline/Model/Optimization/DbVersionInfo.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Optimization/OptimizationDb.cs b/pwiz_tools/Skyline/Model/Optimization/OptimizationDb.cs index fbdae1013bf..bf1d00ca4b4 100644 --- a/pwiz_tools/Skyline/Model/Optimization/OptimizationDb.cs +++ b/pwiz_tools/Skyline/Model/Optimization/OptimizationDb.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Optimization/OptimizationDbManager.cs b/pwiz_tools/Skyline/Model/Optimization/OptimizationDbManager.cs index 3b37ffa906c..e89fda3ccdd 100644 --- a/pwiz_tools/Skyline/Model/Optimization/OptimizationDbManager.cs +++ b/pwiz_tools/Skyline/Model/Optimization/OptimizationDbManager.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Optimization/OptimizationDictionary.cs b/pwiz_tools/Skyline/Model/Optimization/OptimizationDictionary.cs index edc5d85faeb..ab7e2b36ffc 100644 --- a/pwiz_tools/Skyline/Model/Optimization/OptimizationDictionary.cs +++ b/pwiz_tools/Skyline/Model/Optimization/OptimizationDictionary.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Optimization/OptimizationLibrary.cs b/pwiz_tools/Skyline/Model/Optimization/OptimizationLibrary.cs index 7ef4bce9d8a..82bfadc1c37 100644 --- a/pwiz_tools/Skyline/Model/Optimization/OptimizationLibrary.cs +++ b/pwiz_tools/Skyline/Model/Optimization/OptimizationLibrary.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Optimization/mapping.xml b/pwiz_tools/Skyline/Model/Optimization/mapping.xml index 5394bd049eb..cc6eac701f1 100644 --- a/pwiz_tools/Skyline/Model/Optimization/mapping.xml +++ b/pwiz_tools/Skyline/Model/Optimization/mapping.xml @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Model/OptimizationStep.cs b/pwiz_tools/Skyline/Model/OptimizationStep.cs index 3bda4a7d486..c3af06d17ff 100644 --- a/pwiz_tools/Skyline/Model/OptimizationStep.cs +++ b/pwiz_tools/Skyline/Model/OptimizationStep.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/PeakMatcher.cs b/pwiz_tools/Skyline/Model/PeakMatcher.cs index 3b70d57a381..e63337330bc 100644 --- a/pwiz_tools/Skyline/Model/PeakMatcher.cs +++ b/pwiz_tools/Skyline/Model/PeakMatcher.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Peptide.cs b/pwiz_tools/Skyline/Model/Peptide.cs index 6bf5f052c59..78023f228f6 100644 --- a/pwiz_tools/Skyline/Model/Peptide.cs +++ b/pwiz_tools/Skyline/Model/Peptide.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/PeptideDocNode.cs b/pwiz_tools/Skyline/Model/PeptideDocNode.cs index b05f34cec84..5db7a9f415e 100644 --- a/pwiz_tools/Skyline/Model/PeptideDocNode.cs +++ b/pwiz_tools/Skyline/Model/PeptideDocNode.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * @@ -24,6 +24,8 @@ using pwiz.Common.SystemUtil; using pwiz.Skyline.Controls.SeqNode; using pwiz.Skyline.Model.Crosslinking; +using pwiz.Skyline.Model.Databinding; +using pwiz.Skyline.Model.Databinding.Entities; using pwiz.Skyline.Model.DocSettings; using pwiz.Skyline.Model.GroupComparison; using pwiz.Skyline.Model.Irt; diff --git a/pwiz_tools/Skyline/Model/PeptideGroup.cs b/pwiz_tools/Skyline/Model/PeptideGroup.cs index b442d22b542..d19a560d379 100644 --- a/pwiz_tools/Skyline/Model/PeptideGroup.cs +++ b/pwiz_tools/Skyline/Model/PeptideGroup.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/PeptideGroupDocNode.cs b/pwiz_tools/Skyline/Model/PeptideGroupDocNode.cs index 8c52d660499..5c6157c4208 100644 --- a/pwiz_tools/Skyline/Model/PeptideGroupDocNode.cs +++ b/pwiz_tools/Skyline/Model/PeptideGroupDocNode.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/PersistedViews.cs b/pwiz_tools/Skyline/Model/PersistedViews.cs index 9959e27443a..e7076ec1c98 100644 --- a/pwiz_tools/Skyline/Model/PersistedViews.cs +++ b/pwiz_tools/Skyline/Model/PersistedViews.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/PrecursorKey.cs b/pwiz_tools/Skyline/Model/PrecursorKey.cs index 3fc800c41a5..47eb6f5cef1 100644 --- a/pwiz_tools/Skyline/Model/PrecursorKey.cs +++ b/pwiz_tools/Skyline/Model/PrecursorKey.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/ProgressMonitor.cs b/pwiz_tools/Skyline/Model/ProgressMonitor.cs index bbb06bf17ea..73a54444786 100644 --- a/pwiz_tools/Skyline/Model/ProgressMonitor.cs +++ b/pwiz_tools/Skyline/Model/ProgressMonitor.cs @@ -1,4 +1,4 @@ -using pwiz.Common.Collections; +using pwiz.Common.Collections; using System; using System.Collections.Concurrent; using System.Threading; diff --git a/pwiz_tools/Skyline/Model/PropertyGridDocNodeResources.Designer.cs b/pwiz_tools/Skyline/Model/PropertyGridDocNodeResources.Designer.cs new file mode 100644 index 00000000000..f91c6509a85 --- /dev/null +++ b/pwiz_tools/Skyline/Model/PropertyGridDocNodeResources.Designer.cs @@ -0,0 +1,234 @@ +//------------------------------------------------------------------------------ +// +// This code was generated by a tool. +// Runtime Version:4.0.30319.42000 +// +// Changes to this file may cause incorrect behavior and will be lost if +// the code is regenerated. +// +//------------------------------------------------------------------------------ + +namespace pwiz.Skyline.Model { + using System; + + + /// + /// A strongly-typed resource class, for looking up localized strings, etc. + /// + // This class was auto-generated by the StronglyTypedResourceBuilder + // class via a tool like ResGen or Visual Studio. + // To add or remove a member, edit your .ResX file then rerun ResGen + // with the /str option, or rebuild your VS project. + [global::System.CodeDom.Compiler.GeneratedCodeAttribute("System.Resources.Tools.StronglyTypedResourceBuilder", "17.0.0.0")] + [global::System.Diagnostics.DebuggerNonUserCodeAttribute()] + [global::System.Runtime.CompilerServices.CompilerGeneratedAttribute()] + internal class PropertyGridDocNodeResources { + + private static global::System.Resources.ResourceManager resourceMan; + + private static global::System.Globalization.CultureInfo resourceCulture; + + [global::System.Diagnostics.CodeAnalysis.SuppressMessageAttribute("Microsoft.Performance", "CA1811:AvoidUncalledPrivateCode")] + internal PropertyGridDocNodeResources() { + } + + /// + /// Returns the cached ResourceManager instance used by this class. + /// + [global::System.ComponentModel.EditorBrowsableAttribute(global::System.ComponentModel.EditorBrowsableState.Advanced)] + internal static global::System.Resources.ResourceManager ResourceManager { + get { + if (object.ReferenceEquals(resourceMan, null)) { + global::System.Resources.ResourceManager temp = new global::System.Resources.ResourceManager("pwiz.Skyline.Model.PropertyGridDocNodeResources", typeof(PropertyGridDocNodeResources).Assembly); + resourceMan = temp; + } + return resourceMan; + } + } + + /// + /// Overrides the current thread's CurrentUICulture property for all + /// resource lookups using this strongly typed resource class. + /// + [global::System.ComponentModel.EditorBrowsableAttribute(global::System.ComponentModel.EditorBrowsableState.Advanced)] + internal static global::System.Globalization.CultureInfo Culture { + get { + return resourceCulture; + } + set { + resourceCulture = value; + } + } + + /// + /// Looks up a localized string similar to Attribute Group ID. + /// + internal static string AttributeGroupId { + get { + return ResourceManager.GetString("AttributeGroupId", resourceCulture); + } + } + + /// + /// Looks up a localized string similar to Auto Select Precursors. + /// + internal static string AutoSelectPrecursors { + get { + return ResourceManager.GetString("AutoSelectPrecursors", resourceCulture); + } + } + + /// + /// Looks up a localized string similar to Average Measured Retention Time. + /// + internal static string AverageMeasuredRetentionTime { + get { + return ResourceManager.GetString("AverageMeasuredRetentionTime", resourceCulture); + } + } + + /// + /// Looks up a localized string similar to Annotations. + /// + internal static string Category_Annotations { + get { + return ResourceManager.GetString("Category_Annotations", resourceCulture); + } + } + + /// + /// Looks up a localized string similar to Peptide. + /// + internal static string Category_Peptide { + get { + return ResourceManager.GetString("Category_Peptide", resourceCulture); + } + } + + /// + /// Looks up a localized string similar to Transition. + /// + internal static string Category_Transition { + get { + return ResourceManager.GetString("Category_Transition", resourceCulture); + } + } + + /// + /// Looks up a localized string similar to Concentration Multiplier. + /// + internal static string ConcentrationMultiplier { + get { + return ResourceManager.GetString("ConcentrationMultiplier", resourceCulture); + } + } + + /// + /// Looks up a localized string similar to Explicit Retention Time. + /// + internal static string ExplicitRetentionTime { + get { + return ResourceManager.GetString("ExplicitRetentionTime", resourceCulture); + } + } + + /// + /// Looks up a localized string similar to Explicit Retention Time Window. + /// + internal static string ExplicitRetentionTimeWindow { + get { + return ResourceManager.GetString("ExplicitRetentionTimeWindow", resourceCulture); + } + } + + /// + /// Looks up a localized string similar to First Position. + /// + internal static string FirstPosition { + get { + return ResourceManager.GetString("FirstPosition", resourceCulture); + } + } + + /// + /// Looks up a localized string similar to Internal Standard Concentration. + /// + internal static string InternalStandardConcentration { + get { + return ResourceManager.GetString("InternalStandardConcentration", resourceCulture); + } + } + + /// + /// Looks up a localized string similar to Last Position. + /// + internal static string LastPosition { + get { + return ResourceManager.GetString("LastPosition", resourceCulture); + } + } + + /// + /// Looks up a localized string similar to Missed Cleavages. + /// + internal static string MissedCleavages { + get { + return ResourceManager.GetString("MissedCleavages", resourceCulture); + } + } + + /// + /// Looks up a localized string similar to Modified Sequence. + /// + internal static string ModifiedSequence { + get { + return ResourceManager.GetString("ModifiedSequence", resourceCulture); + } + } + + /// + /// Looks up a localized string similar to Note. + /// + internal static string Note { + get { + return ResourceManager.GetString("Note", resourceCulture); + } + } + + /// + /// Looks up a localized string similar to Predicted Retention Time. + /// + internal static string PredictedRetentionTime { + get { + return ResourceManager.GetString("PredictedRetentionTime", resourceCulture); + } + } + + /// + /// Looks up a localized string similar to Protein Sequence. + /// + internal static string ProteinSequence { + get { + return ResourceManager.GetString("ProteinSequence", resourceCulture); + } + } + + /// + /// Looks up a localized string similar to Sequence. + /// + internal static string Sequence { + get { + return ResourceManager.GetString("Sequence", resourceCulture); + } + } + + /// + /// Looks up a localized string similar to Standard Type. + /// + internal static string StandardType { + get { + return ResourceManager.GetString("StandardType", resourceCulture); + } + } + } +} diff --git a/pwiz_tools/Skyline/Model/PropertyGridDocNodeResources.resx b/pwiz_tools/Skyline/Model/PropertyGridDocNodeResources.resx new file mode 100644 index 00000000000..e2f763014a9 --- /dev/null +++ b/pwiz_tools/Skyline/Model/PropertyGridDocNodeResources.resx @@ -0,0 +1,177 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + text/microsoft-resx + + + 2.0 + + + System.Resources.ResXResourceReader, System.Windows.Forms, Version=4.0.0.0, Culture=neutral, PublicKeyToken=b77a5c561934e089 + + + System.Resources.ResXResourceWriter, System.Windows.Forms, Version=4.0.0.0, Culture=neutral, PublicKeyToken=b77a5c561934e089 + + + Peptide + + + Annotations + + + Sequence + + + Protein Sequence + + + Modified Sequence + + + First Position + + + Last Position + + + Missed Cleavages + + + Predicted Retention Time + + + Average Measured Retention Time + + + Standard Type + + + Note + + + Concentration Multiplier + + + Attribute Group ID + + + Auto Select Precursors + + + Explicit Retention Time + + + Explicit Retention Time Window + + + Internal Standard Concentration + + + Transition + + \ No newline at end of file diff --git a/pwiz_tools/Skyline/Model/PropertyGridResources.Designer.cs b/pwiz_tools/Skyline/Model/PropertyGridResources.Designer.cs new file mode 100644 index 00000000000..9cd240d9da6 --- /dev/null +++ b/pwiz_tools/Skyline/Model/PropertyGridResources.Designer.cs @@ -0,0 +1,72 @@ +//------------------------------------------------------------------------------ +// +// This code was generated by a tool. +// Runtime Version:4.0.30319.42000 +// +// Changes to this file may cause incorrect behavior and will be lost if +// the code is regenerated. +// +//------------------------------------------------------------------------------ + +namespace pwiz.Skyline.Model { + using System; + + + /// + /// A strongly-typed resource class, for looking up localized strings, etc. + /// + // This class was auto-generated by the StronglyTypedResourceBuilder + // class via a tool like ResGen or Visual Studio. + // To add or remove a member, edit your .ResX file then rerun ResGen + // with the /str option, or rebuild your VS project. + [global::System.CodeDom.Compiler.GeneratedCodeAttribute("System.Resources.Tools.StronglyTypedResourceBuilder", "17.0.0.0")] + [global::System.Diagnostics.DebuggerNonUserCodeAttribute()] + [global::System.Runtime.CompilerServices.CompilerGeneratedAttribute()] + internal class PropertyGridResources { + + private static global::System.Resources.ResourceManager resourceMan; + + private static global::System.Globalization.CultureInfo resourceCulture; + + [global::System.Diagnostics.CodeAnalysis.SuppressMessageAttribute("Microsoft.Performance", "CA1811:AvoidUncalledPrivateCode")] + internal PropertyGridResources() { + } + + /// + /// Returns the cached ResourceManager instance used by this class. + /// + [global::System.ComponentModel.EditorBrowsableAttribute(global::System.ComponentModel.EditorBrowsableState.Advanced)] + internal static global::System.Resources.ResourceManager ResourceManager { + get { + if (object.ReferenceEquals(resourceMan, null)) { + global::System.Resources.ResourceManager temp = new global::System.Resources.ResourceManager("pwiz.Skyline.Model.PropertyGridResources", typeof(PropertyGridResources).Assembly); + resourceMan = temp; + } + return resourceMan; + } + } + + /// + /// Overrides the current thread's CurrentUICulture property for all + /// resource lookups using this strongly typed resource class. + /// + [global::System.ComponentModel.EditorBrowsableAttribute(global::System.ComponentModel.EditorBrowsableState.Advanced)] + internal static global::System.Globalization.CultureInfo Culture { + get { + return resourceCulture; + } + set { + resourceCulture = value; + } + } + + /// + /// Looks up a localized string similar to Annotations. + /// + internal static string Category_Annotations { + get { + return ResourceManager.GetString("Category_Annotations", resourceCulture); + } + } + } +} diff --git a/pwiz_tools/Skyline/Model/PropertyGridResources.resx b/pwiz_tools/Skyline/Model/PropertyGridResources.resx new file mode 100644 index 00000000000..52498d22721 --- /dev/null +++ b/pwiz_tools/Skyline/Model/PropertyGridResources.resx @@ -0,0 +1,123 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + text/microsoft-resx + + + 2.0 + + + System.Resources.ResXResourceReader, System.Windows.Forms, Version=4.0.0.0, Culture=neutral, PublicKeyToken=b77a5c561934e089 + + + System.Resources.ResXResourceWriter, System.Windows.Forms, Version=4.0.0.0, Culture=neutral, PublicKeyToken=b77a5c561934e089 + + + Annotations + + \ No newline at end of file diff --git a/pwiz_tools/Skyline/Model/Proteome/AssociateProteinsResults.cs b/pwiz_tools/Skyline/Model/Proteome/AssociateProteinsResults.cs index 626e68046ca..908d585f079 100644 --- a/pwiz_tools/Skyline/Model/Proteome/AssociateProteinsResults.cs +++ b/pwiz_tools/Skyline/Model/Proteome/AssociateProteinsResults.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Proteome/BackgroundProteome.cs b/pwiz_tools/Skyline/Model/Proteome/BackgroundProteome.cs index dad6c5da8b2..2374c40ae79 100644 --- a/pwiz_tools/Skyline/Model/Proteome/BackgroundProteome.cs +++ b/pwiz_tools/Skyline/Model/Proteome/BackgroundProteome.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Proteome/BackgroundProteomeManager.cs b/pwiz_tools/Skyline/Model/Proteome/BackgroundProteomeManager.cs index 050df7b05bf..494be72a8f5 100644 --- a/pwiz_tools/Skyline/Model/Proteome/BackgroundProteomeManager.cs +++ b/pwiz_tools/Skyline/Model/Proteome/BackgroundProteomeManager.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Proteome/BackgroundProteomeSpec.cs b/pwiz_tools/Skyline/Model/Proteome/BackgroundProteomeSpec.cs index 1317f98c5d1..167d2097490 100644 --- a/pwiz_tools/Skyline/Model/Proteome/BackgroundProteomeSpec.cs +++ b/pwiz_tools/Skyline/Model/Proteome/BackgroundProteomeSpec.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Proteome/ProteinAssociation.cs b/pwiz_tools/Skyline/Model/Proteome/ProteinAssociation.cs index 1f49b1be978..1264d96e70d 100644 --- a/pwiz_tools/Skyline/Model/Proteome/ProteinAssociation.cs +++ b/pwiz_tools/Skyline/Model/Proteome/ProteinAssociation.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2022 diff --git a/pwiz_tools/Skyline/Model/Proteome/ProteinGroupMetadata.cs b/pwiz_tools/Skyline/Model/Proteome/ProteinGroupMetadata.cs index 6638431f925..0c08eacd713 100644 --- a/pwiz_tools/Skyline/Model/Proteome/ProteinGroupMetadata.cs +++ b/pwiz_tools/Skyline/Model/Proteome/ProteinGroupMetadata.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2022 diff --git a/pwiz_tools/Skyline/Model/Proteome/ProteinMetadataManager.cs b/pwiz_tools/Skyline/Model/Proteome/ProteinMetadataManager.cs index 6d9d73725e4..de8ae9d2d86 100644 --- a/pwiz_tools/Skyline/Model/Proteome/ProteinMetadataManager.cs +++ b/pwiz_tools/Skyline/Model/Proteome/ProteinMetadataManager.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/ProteomicSequence.cs b/pwiz_tools/Skyline/Model/ProteomicSequence.cs index 9d73b12006e..4ade5ce9ff8 100644 --- a/pwiz_tools/Skyline/Model/ProteomicSequence.cs +++ b/pwiz_tools/Skyline/Model/ProteomicSequence.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/RefinementSettings.cs b/pwiz_tools/Skyline/Model/RefinementSettings.cs index 2c06f30ccfa..adcc86764dc 100644 --- a/pwiz_tools/Skyline/Model/RefinementSettings.cs +++ b/pwiz_tools/Skyline/Model/RefinementSettings.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/ReintegrateResultsHandler.cs b/pwiz_tools/Skyline/Model/ReintegrateResultsHandler.cs index e9b5df90ca8..01fb325a410 100644 --- a/pwiz_tools/Skyline/Model/ReintegrateResultsHandler.cs +++ b/pwiz_tools/Skyline/Model/ReintegrateResultsHandler.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/AbstractDemultiplexer.cs b/pwiz_tools/Skyline/Model/Results/AbstractDemultiplexer.cs index 55094c570cf..94a945e1ae5 100644 --- a/pwiz_tools/Skyline/Model/Results/AbstractDemultiplexer.cs +++ b/pwiz_tools/Skyline/Model/Results/AbstractDemultiplexer.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Jarrett Egertson , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/ArrayPool.cs b/pwiz_tools/Skyline/Model/Results/ArrayPool.cs index 8f663660428..590bd250f2c 100644 --- a/pwiz_tools/Skyline/Model/Results/ArrayPool.cs +++ b/pwiz_tools/Skyline/Model/Results/ArrayPool.cs @@ -1,4 +1,4 @@ -/* +/* * Author: Jarrett Egertson , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/CacheFormat.cs b/pwiz_tools/Skyline/Model/Results/CacheFormat.cs index 1b21f5dc4dd..1c74014f280 100644 --- a/pwiz_tools/Skyline/Model/Results/CacheFormat.cs +++ b/pwiz_tools/Skyline/Model/Results/CacheFormat.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/CachedFileHeader.cs b/pwiz_tools/Skyline/Model/Results/CachedFileHeader.cs index 59e98740da9..08e90c95258 100644 --- a/pwiz_tools/Skyline/Model/Results/CachedFileHeader.cs +++ b/pwiz_tools/Skyline/Model/Results/CachedFileHeader.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/CandidatePeakGroupData.cs b/pwiz_tools/Skyline/Model/Results/CandidatePeakGroupData.cs index 288f323b194..b1682c6c3dd 100644 --- a/pwiz_tools/Skyline/Model/Results/CandidatePeakGroupData.cs +++ b/pwiz_tools/Skyline/Model/Results/CandidatePeakGroupData.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/ChromCacheBuilder.cs b/pwiz_tools/Skyline/Model/Results/ChromCacheBuilder.cs index 91c543987db..99e43a69454 100644 --- a/pwiz_tools/Skyline/Model/Results/ChromCacheBuilder.cs +++ b/pwiz_tools/Skyline/Model/Results/ChromCacheBuilder.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/ChromCacheJoiner.cs b/pwiz_tools/Skyline/Model/Results/ChromCacheJoiner.cs index 346b056e866..118b6382bc5 100644 --- a/pwiz_tools/Skyline/Model/Results/ChromCacheJoiner.cs +++ b/pwiz_tools/Skyline/Model/Results/ChromCacheJoiner.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/ChromCacheMinimizer.cs b/pwiz_tools/Skyline/Model/Results/ChromCacheMinimizer.cs index 942d8c88873..01d3417e083 100644 --- a/pwiz_tools/Skyline/Model/Results/ChromCacheMinimizer.cs +++ b/pwiz_tools/Skyline/Model/Results/ChromCacheMinimizer.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/ChromCacheWriter.cs b/pwiz_tools/Skyline/Model/Results/ChromCacheWriter.cs index bbaf5f2edbf..d3f5fbfe21f 100644 --- a/pwiz_tools/Skyline/Model/Results/ChromCacheWriter.cs +++ b/pwiz_tools/Skyline/Model/Results/ChromCacheWriter.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/ChromCollector.cs b/pwiz_tools/Skyline/Model/Results/ChromCollector.cs index 887ab3d4c8d..e2ccaedd8e1 100644 --- a/pwiz_tools/Skyline/Model/Results/ChromCollector.cs +++ b/pwiz_tools/Skyline/Model/Results/ChromCollector.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/ChromData.cs b/pwiz_tools/Skyline/Model/Results/ChromData.cs index 7e4ae1e4b33..5972d497282 100644 --- a/pwiz_tools/Skyline/Model/Results/ChromData.cs +++ b/pwiz_tools/Skyline/Model/Results/ChromData.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/ChromDataProvider.cs b/pwiz_tools/Skyline/Model/Results/ChromDataProvider.cs index 288a23ca914..39ba7a7571f 100644 --- a/pwiz_tools/Skyline/Model/Results/ChromDataProvider.cs +++ b/pwiz_tools/Skyline/Model/Results/ChromDataProvider.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/ChromDataSet.cs b/pwiz_tools/Skyline/Model/Results/ChromDataSet.cs index 83ec7f083aa..c7c37c26d85 100644 --- a/pwiz_tools/Skyline/Model/Results/ChromDataSet.cs +++ b/pwiz_tools/Skyline/Model/Results/ChromDataSet.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/ChromHeaderInfo.cs b/pwiz_tools/Skyline/Model/Results/ChromHeaderInfo.cs index 159bd046042..bd5ace04016 100644 --- a/pwiz_tools/Skyline/Model/Results/ChromHeaderInfo.cs +++ b/pwiz_tools/Skyline/Model/Results/ChromHeaderInfo.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/ChromInfoData.cs b/pwiz_tools/Skyline/Model/Results/ChromInfoData.cs index dab3293424a..987919b285d 100644 --- a/pwiz_tools/Skyline/Model/Results/ChromInfoData.cs +++ b/pwiz_tools/Skyline/Model/Results/ChromInfoData.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/Chromatogram.cs b/pwiz_tools/Skyline/Model/Results/Chromatogram.cs index c0e129782cf..f9c8814e59e 100644 --- a/pwiz_tools/Skyline/Model/Results/Chromatogram.cs +++ b/pwiz_tools/Skyline/Model/Results/Chromatogram.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/ChromatogramCache.cs b/pwiz_tools/Skyline/Model/Results/ChromatogramCache.cs index c80fef82075..84d196a557f 100644 --- a/pwiz_tools/Skyline/Model/Results/ChromatogramCache.cs +++ b/pwiz_tools/Skyline/Model/Results/ChromatogramCache.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/ChromatogramGroupId.cs b/pwiz_tools/Skyline/Model/Results/ChromatogramGroupId.cs index 560c76561d0..229b3d45a28 100644 --- a/pwiz_tools/Skyline/Model/Results/ChromatogramGroupId.cs +++ b/pwiz_tools/Skyline/Model/Results/ChromatogramGroupId.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/ChromatogramLoadingStatus.cs b/pwiz_tools/Skyline/Model/Results/ChromatogramLoadingStatus.cs index 70f7b00913a..fdc4c537d74 100644 --- a/pwiz_tools/Skyline/Model/Results/ChromatogramLoadingStatus.cs +++ b/pwiz_tools/Skyline/Model/Results/ChromatogramLoadingStatus.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/Crawdad/Crawdads.cs b/pwiz_tools/Skyline/Model/Results/Crawdad/Crawdads.cs index 7fb639d4678..f916012bc9d 100644 --- a/pwiz_tools/Skyline/Model/Results/Crawdad/Crawdads.cs +++ b/pwiz_tools/Skyline/Model/Results/Crawdad/Crawdads.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/Demultiplexer.cs b/pwiz_tools/Skyline/Model/Results/Demultiplexer.cs index c13ec59e9b5..55ce6d5e62a 100644 --- a/pwiz_tools/Skyline/Model/Results/Demultiplexer.cs +++ b/pwiz_tools/Skyline/Model/Results/Demultiplexer.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Jarrett Egertson , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/DocNodeChromInfo.cs b/pwiz_tools/Skyline/Model/Results/DocNodeChromInfo.cs index 74a70b0f376..d2df210651b 100644 --- a/pwiz_tools/Skyline/Model/Results/DocNodeChromInfo.cs +++ b/pwiz_tools/Skyline/Model/Results/DocNodeChromInfo.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/Exception.cs b/pwiz_tools/Skyline/Model/Results/Exception.cs index a4f9a456192..2c5c933abcb 100644 --- a/pwiz_tools/Skyline/Model/Results/Exception.cs +++ b/pwiz_tools/Skyline/Model/Results/Exception.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/ExtractedSpectrum.cs b/pwiz_tools/Skyline/Model/Results/ExtractedSpectrum.cs index 8a61476f9bd..20fa323b412 100644 --- a/pwiz_tools/Skyline/Model/Results/ExtractedSpectrum.cs +++ b/pwiz_tools/Skyline/Model/Results/ExtractedSpectrum.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/FastOverlapDemultiplexer.cs b/pwiz_tools/Skyline/Model/Results/FastOverlapDemultiplexer.cs index 4d74ceea918..060dd457d46 100644 --- a/pwiz_tools/Skyline/Model/Results/FastOverlapDemultiplexer.cs +++ b/pwiz_tools/Skyline/Model/Results/FastOverlapDemultiplexer.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/IRetentionTimePredictor.cs b/pwiz_tools/Skyline/Model/Results/IRetentionTimePredictor.cs index 080e7c28ce3..85a6bc8eb57 100644 --- a/pwiz_tools/Skyline/Model/Results/IRetentionTimePredictor.cs +++ b/pwiz_tools/Skyline/Model/Results/IRetentionTimePredictor.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/IntensityAccumulator.cs b/pwiz_tools/Skyline/Model/Results/IntensityAccumulator.cs index 769a3d6220b..b5a3d236ecc 100644 --- a/pwiz_tools/Skyline/Model/Results/IntensityAccumulator.cs +++ b/pwiz_tools/Skyline/Model/Results/IntensityAccumulator.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Rita Chupalov , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/IonMobilityFinder.cs b/pwiz_tools/Skyline/Model/Results/IonMobilityFinder.cs index 012043b76e9..9788a5c6386 100644 --- a/pwiz_tools/Skyline/Model/Results/IonMobilityFinder.cs +++ b/pwiz_tools/Skyline/Model/Results/IonMobilityFinder.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/IsotopeDistInfo.cs b/pwiz_tools/Skyline/Model/Results/IsotopeDistInfo.cs index 341efe5bbbc..2d5d55880c6 100644 --- a/pwiz_tools/Skyline/Model/Results/IsotopeDistInfo.cs +++ b/pwiz_tools/Skyline/Model/Results/IsotopeDistInfo.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/LcPeakIonMetrics.cs b/pwiz_tools/Skyline/Model/Results/LcPeakIonMetrics.cs index 59bb3c2ba88..137e01cd914 100644 --- a/pwiz_tools/Skyline/Model/Results/LcPeakIonMetrics.cs +++ b/pwiz_tools/Skyline/Model/Results/LcPeakIonMetrics.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/Legacy/ChromGroupHeaderInfo16.cs b/pwiz_tools/Skyline/Model/Results/Legacy/ChromGroupHeaderInfo16.cs index 7d1bc975462..d32d644c88d 100644 --- a/pwiz_tools/Skyline/Model/Results/Legacy/ChromGroupHeaderInfo16.cs +++ b/pwiz_tools/Skyline/Model/Results/Legacy/ChromGroupHeaderInfo16.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/MeasuredResults.cs b/pwiz_tools/Skyline/Model/Results/MeasuredResults.cs index 8da1b682b31..6d19e020437 100644 --- a/pwiz_tools/Skyline/Model/Results/MeasuredResults.cs +++ b/pwiz_tools/Skyline/Model/Results/MeasuredResults.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/MedianPeakShape.cs b/pwiz_tools/Skyline/Model/Results/MedianPeakShape.cs index cd672c50a9d..ce3aa5c829a 100644 --- a/pwiz_tools/Skyline/Model/Results/MedianPeakShape.cs +++ b/pwiz_tools/Skyline/Model/Results/MedianPeakShape.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/MsDataFileScanHelper.cs b/pwiz_tools/Skyline/Model/Results/MsDataFileScanHelper.cs index 211a931cfa9..bd9415124f1 100644 --- a/pwiz_tools/Skyline/Model/Results/MsDataFileScanHelper.cs +++ b/pwiz_tools/Skyline/Model/Results/MsDataFileScanHelper.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/MsDataFileScanIds.cs b/pwiz_tools/Skyline/Model/Results/MsDataFileScanIds.cs index cc61edcaeec..77a34d0ff00 100644 --- a/pwiz_tools/Skyline/Model/Results/MsDataFileScanIds.cs +++ b/pwiz_tools/Skyline/Model/Results/MsDataFileScanIds.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/MsxDemultiplexer.cs b/pwiz_tools/Skyline/Model/Results/MsxDemultiplexer.cs index a9fb14b9b8b..b9c7a9304d7 100644 --- a/pwiz_tools/Skyline/Model/Results/MsxDemultiplexer.cs +++ b/pwiz_tools/Skyline/Model/Results/MsxDemultiplexer.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Dario Amodei , * Mallick Lab, Department of Radiology, Stanford * diff --git a/pwiz_tools/Skyline/Model/Results/NormalizeOption.cs b/pwiz_tools/Skyline/Model/Results/NormalizeOption.cs index c364b47e3eb..3af0e392620 100644 --- a/pwiz_tools/Skyline/Model/Results/NormalizeOption.cs +++ b/pwiz_tools/Skyline/Model/Results/NormalizeOption.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/NormalizedValueCalculator.cs b/pwiz_tools/Skyline/Model/Results/NormalizedValueCalculator.cs index e3cdd1d2af4..8ae2981cf5a 100644 --- a/pwiz_tools/Skyline/Model/Results/NormalizedValueCalculator.cs +++ b/pwiz_tools/Skyline/Model/Results/NormalizedValueCalculator.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/NumericsLsSolver.cs b/pwiz_tools/Skyline/Model/Results/NumericsLsSolver.cs index ff3bd9ad982..01f2591dbad 100644 --- a/pwiz_tools/Skyline/Model/Results/NumericsLsSolver.cs +++ b/pwiz_tools/Skyline/Model/Results/NumericsLsSolver.cs @@ -1,4 +1,4 @@ -/* +/* * Translator: Jarrett Egertson , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/OnDemandFeatureCalculator.cs b/pwiz_tools/Skyline/Model/Results/OnDemandFeatureCalculator.cs index 649f867aee3..f85d4774d15 100644 --- a/pwiz_tools/Skyline/Model/Results/OnDemandFeatureCalculator.cs +++ b/pwiz_tools/Skyline/Model/Results/OnDemandFeatureCalculator.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/OptStepChromatograms.cs b/pwiz_tools/Skyline/Model/Results/OptStepChromatograms.cs index eb9f5f7cebc..b2490123ff5 100644 --- a/pwiz_tools/Skyline/Model/Results/OptStepChromatograms.cs +++ b/pwiz_tools/Skyline/Model/Results/OptStepChromatograms.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/OverlapDemultiplexer.cs b/pwiz_tools/Skyline/Model/Results/OverlapDemultiplexer.cs index 5ef5e66c783..801fa487cc7 100644 --- a/pwiz_tools/Skyline/Model/Results/OverlapDemultiplexer.cs +++ b/pwiz_tools/Skyline/Model/Results/OverlapDemultiplexer.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Dario Amodei , * Mallick Lab, Department of Radiology, Stanford * diff --git a/pwiz_tools/Skyline/Model/Results/PeakGroupIntegrator.cs b/pwiz_tools/Skyline/Model/Results/PeakGroupIntegrator.cs index 4a678369944..ce13d55fa54 100644 --- a/pwiz_tools/Skyline/Model/Results/PeakGroupIntegrator.cs +++ b/pwiz_tools/Skyline/Model/Results/PeakGroupIntegrator.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/PeakIntegrator.cs b/pwiz_tools/Skyline/Model/Results/PeakIntegrator.cs index 512a385e773..7747ce8e657 100644 --- a/pwiz_tools/Skyline/Model/Results/PeakIntegrator.cs +++ b/pwiz_tools/Skyline/Model/Results/PeakIntegrator.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/PeakShapeStatistics.cs b/pwiz_tools/Skyline/Model/Results/PeakShapeStatistics.cs index 8a9e0b362bb..3cd785dde81 100644 --- a/pwiz_tools/Skyline/Model/Results/PeakShapeStatistics.cs +++ b/pwiz_tools/Skyline/Model/Results/PeakShapeStatistics.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections.Generic; using pwiz.Common.SystemUtil; diff --git a/pwiz_tools/Skyline/Model/Results/PeakShapeValues.cs b/pwiz_tools/Skyline/Model/Results/PeakShapeValues.cs index 4438df4d29b..16ed123e1a6 100644 --- a/pwiz_tools/Skyline/Model/Results/PeakShapeValues.cs +++ b/pwiz_tools/Skyline/Model/Results/PeakShapeValues.cs @@ -1,4 +1,4 @@ -using System; +using System; namespace pwiz.Skyline.Model.Results { diff --git a/pwiz_tools/Skyline/Model/Results/PeptideChromData.cs b/pwiz_tools/Skyline/Model/Results/PeptideChromData.cs index 3c621d83ae2..b3ea9c58d2a 100644 --- a/pwiz_tools/Skyline/Model/Results/PeptideChromData.cs +++ b/pwiz_tools/Skyline/Model/Results/PeptideChromData.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/PeptideFinder.cs b/pwiz_tools/Skyline/Model/Results/PeptideFinder.cs index 29fd7347b8b..832fd2672fa 100644 --- a/pwiz_tools/Skyline/Model/Results/PeptideFinder.cs +++ b/pwiz_tools/Skyline/Model/Results/PeptideFinder.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/PrecursorTextId.cs b/pwiz_tools/Skyline/Model/Results/PrecursorTextId.cs index 0bf99926e39..2f2ef9af90b 100644 --- a/pwiz_tools/Skyline/Model/Results/PrecursorTextId.cs +++ b/pwiz_tools/Skyline/Model/Results/PrecursorTextId.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/RatioValue.cs b/pwiz_tools/Skyline/Model/Results/RatioValue.cs index dd913172c4a..db2d04c0b8d 100644 --- a/pwiz_tools/Skyline/Model/Results/RatioValue.cs +++ b/pwiz_tools/Skyline/Model/Results/RatioValue.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/ResultNameMap.cs b/pwiz_tools/Skyline/Model/Results/ResultNameMap.cs index 1e811bacb90..f441cb0f6f3 100644 --- a/pwiz_tools/Skyline/Model/Results/ResultNameMap.cs +++ b/pwiz_tools/Skyline/Model/Results/ResultNameMap.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections; using System.Linq; using System.Collections.Generic; diff --git a/pwiz_tools/Skyline/Model/Results/ResultsResources.designer.cs b/pwiz_tools/Skyline/Model/Results/ResultsResources.designer.cs index 20d1a8f9b24..1b495afb494 100644 --- a/pwiz_tools/Skyline/Model/Results/ResultsResources.designer.cs +++ b/pwiz_tools/Skyline/Model/Results/ResultsResources.designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Model/Results/ScanProvider.cs b/pwiz_tools/Skyline/Model/Results/ScanProvider.cs index 42f628e091e..60eed321b09 100644 --- a/pwiz_tools/Skyline/Model/Results/ScanProvider.cs +++ b/pwiz_tools/Skyline/Model/Results/ScanProvider.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/ScoredPeakBounds.cs b/pwiz_tools/Skyline/Model/Results/ScoredPeakBounds.cs index d2922ca9c3e..2ff812b7d58 100644 --- a/pwiz_tools/Skyline/Model/Results/ScoredPeakBounds.cs +++ b/pwiz_tools/Skyline/Model/Results/ScoredPeakBounds.cs @@ -1,4 +1,4 @@ -using pwiz.Common.PeakFinding; +using pwiz.Common.PeakFinding; using pwiz.Common.SystemUtil; using pwiz.CommonMsData; using pwiz.Skyline.Model.Lib; diff --git a/pwiz_tools/Skyline/Model/Results/Scoring/AutoTrainManager.cs b/pwiz_tools/Skyline/Model/Results/Scoring/AutoTrainManager.cs index 64e76237a74..62d46c2aa8e 100644 --- a/pwiz_tools/Skyline/Model/Results/Scoring/AutoTrainManager.cs +++ b/pwiz_tools/Skyline/Model/Results/Scoring/AutoTrainManager.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/Scoring/Calculators.cs b/pwiz_tools/Skyline/Model/Results/Scoring/Calculators.cs index 43e0d2a4db7..7d24ef1e5d8 100644 --- a/pwiz_tools/Skyline/Model/Results/Scoring/Calculators.cs +++ b/pwiz_tools/Skyline/Model/Results/Scoring/Calculators.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/Scoring/FeatureCalculator.cs b/pwiz_tools/Skyline/Model/Results/Scoring/FeatureCalculator.cs index d6fe37cf0c9..520e5ddea00 100644 --- a/pwiz_tools/Skyline/Model/Results/Scoring/FeatureCalculator.cs +++ b/pwiz_tools/Skyline/Model/Results/Scoring/FeatureCalculator.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/Scoring/FeatureNames.cs b/pwiz_tools/Skyline/Model/Results/Scoring/FeatureNames.cs index e2a79418dd2..103f9f10acf 100644 --- a/pwiz_tools/Skyline/Model/Results/Scoring/FeatureNames.cs +++ b/pwiz_tools/Skyline/Model/Results/Scoring/FeatureNames.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/Scoring/FeatureScores.cs b/pwiz_tools/Skyline/Model/Results/Scoring/FeatureScores.cs index 1b6790e6c17..1e684b2c854 100644 --- a/pwiz_tools/Skyline/Model/Results/Scoring/FeatureScores.cs +++ b/pwiz_tools/Skyline/Model/Results/Scoring/FeatureScores.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/Scoring/FeatureTooltips.Designer.cs b/pwiz_tools/Skyline/Model/Results/Scoring/FeatureTooltips.Designer.cs index bd122457cd5..c0393d71672 100644 --- a/pwiz_tools/Skyline/Model/Results/Scoring/FeatureTooltips.Designer.cs +++ b/pwiz_tools/Skyline/Model/Results/Scoring/FeatureTooltips.Designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Model/Results/Scoring/IPeakScoringModel.cs b/pwiz_tools/Skyline/Model/Results/Scoring/IPeakScoringModel.cs index fa697a4d07a..e7af2459e28 100644 --- a/pwiz_tools/Skyline/Model/Results/Scoring/IPeakScoringModel.cs +++ b/pwiz_tools/Skyline/Model/Results/Scoring/IPeakScoringModel.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/Scoring/LegacyFeatureCalc.cs b/pwiz_tools/Skyline/Model/Results/Scoring/LegacyFeatureCalc.cs index 3d595788ca3..c8d0d17a67f 100644 --- a/pwiz_tools/Skyline/Model/Results/Scoring/LegacyFeatureCalc.cs +++ b/pwiz_tools/Skyline/Model/Results/Scoring/LegacyFeatureCalc.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/Scoring/LegacyScoringModel.cs b/pwiz_tools/Skyline/Model/Results/Scoring/LegacyScoringModel.cs index 37eed0a5965..70f10b5f20f 100644 --- a/pwiz_tools/Skyline/Model/Results/Scoring/LegacyScoringModel.cs +++ b/pwiz_tools/Skyline/Model/Results/Scoring/LegacyScoringModel.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/Scoring/MProphetScoringModel.cs b/pwiz_tools/Skyline/Model/Results/Scoring/MProphetScoringModel.cs index 132c45abf0f..f2f6d02e2b6 100644 --- a/pwiz_tools/Skyline/Model/Results/Scoring/MProphetScoringModel.cs +++ b/pwiz_tools/Skyline/Model/Results/Scoring/MProphetScoringModel.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/Scoring/MQuestFeatureCalc.cs b/pwiz_tools/Skyline/Model/Results/Scoring/MQuestFeatureCalc.cs index 0a760df779a..efb9f09e615 100644 --- a/pwiz_tools/Skyline/Model/Results/Scoring/MQuestFeatureCalc.cs +++ b/pwiz_tools/Skyline/Model/Results/Scoring/MQuestFeatureCalc.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/Scoring/NextGenFeatureCalc.cs b/pwiz_tools/Skyline/Model/Results/Scoring/NextGenFeatureCalc.cs index 427a4d33b9e..0cbfafb5685 100644 --- a/pwiz_tools/Skyline/Model/Results/Scoring/NextGenFeatureCalc.cs +++ b/pwiz_tools/Skyline/Model/Results/Scoring/NextGenFeatureCalc.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Dario Amodei , * Mallick Lab, Department of Radiology, Stanford * diff --git a/pwiz_tools/Skyline/Model/Results/Scoring/PeakFeatureEnumerator.cs b/pwiz_tools/Skyline/Model/Results/Scoring/PeakFeatureEnumerator.cs index b8a298d9ae9..c47aef64177 100644 --- a/pwiz_tools/Skyline/Model/Results/Scoring/PeakFeatureEnumerator.cs +++ b/pwiz_tools/Skyline/Model/Results/Scoring/PeakFeatureEnumerator.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/Scoring/ReintegrateDlgSettings.cs b/pwiz_tools/Skyline/Model/Results/Scoring/ReintegrateDlgSettings.cs index 4986bf16c6d..35f6e9e44be 100644 --- a/pwiz_tools/Skyline/Model/Results/Scoring/ReintegrateDlgSettings.cs +++ b/pwiz_tools/Skyline/Model/Results/Scoring/ReintegrateDlgSettings.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/Scoring/ScoreQValueMap.cs b/pwiz_tools/Skyline/Model/Results/Scoring/ScoreQValueMap.cs index 81e4367dbe2..a9a19223e1a 100644 --- a/pwiz_tools/Skyline/Model/Results/Scoring/ScoreQValueMap.cs +++ b/pwiz_tools/Skyline/Model/Results/Scoring/ScoreQValueMap.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/Scoring/ScoredGroupPeaks.cs b/pwiz_tools/Skyline/Model/Results/Scoring/ScoredGroupPeaks.cs index bf07ebc03e2..c081c6cecd8 100644 --- a/pwiz_tools/Skyline/Model/Results/Scoring/ScoredGroupPeaks.cs +++ b/pwiz_tools/Skyline/Model/Results/Scoring/ScoredGroupPeaks.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/Scoring/ScoredGroupPeaksSet.cs b/pwiz_tools/Skyline/Model/Results/Scoring/ScoredGroupPeaksSet.cs index f6e6e3abe4f..2b4ce4b5bb4 100644 --- a/pwiz_tools/Skyline/Model/Results/Scoring/ScoredGroupPeaksSet.cs +++ b/pwiz_tools/Skyline/Model/Results/Scoring/ScoredGroupPeaksSet.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/Scoring/ScoredPeak.cs b/pwiz_tools/Skyline/Model/Results/Scoring/ScoredPeak.cs index 40f3f805f32..46a299ce2e1 100644 --- a/pwiz_tools/Skyline/Model/Results/Scoring/ScoredPeak.cs +++ b/pwiz_tools/Skyline/Model/Results/Scoring/ScoredPeak.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/Spectra/Alignment/BinnedSpectrum.cs b/pwiz_tools/Skyline/Model/Results/Spectra/Alignment/BinnedSpectrum.cs index eb3d15e433e..b9d8557c60d 100644 --- a/pwiz_tools/Skyline/Model/Results/Spectra/Alignment/BinnedSpectrum.cs +++ b/pwiz_tools/Skyline/Model/Results/Spectra/Alignment/BinnedSpectrum.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/Spectra/Alignment/SimilarityGrid.cs b/pwiz_tools/Skyline/Model/Results/Spectra/Alignment/SimilarityGrid.cs index 085df328c06..eba762ce586 100644 --- a/pwiz_tools/Skyline/Model/Results/Spectra/Alignment/SimilarityGrid.cs +++ b/pwiz_tools/Skyline/Model/Results/Spectra/Alignment/SimilarityGrid.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/Spectra/Alignment/SpectrumSummary.cs b/pwiz_tools/Skyline/Model/Results/Spectra/Alignment/SpectrumSummary.cs index 81922e88ed9..48b3a7c6b9a 100644 --- a/pwiz_tools/Skyline/Model/Results/Spectra/Alignment/SpectrumSummary.cs +++ b/pwiz_tools/Skyline/Model/Results/Spectra/Alignment/SpectrumSummary.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/Spectra/Alignment/SpectrumSummaryList.cs b/pwiz_tools/Skyline/Model/Results/Spectra/Alignment/SpectrumSummaryList.cs index 0e1e02f89b7..fef0c2cd633 100644 --- a/pwiz_tools/Skyline/Model/Results/Spectra/Alignment/SpectrumSummaryList.cs +++ b/pwiz_tools/Skyline/Model/Results/Spectra/Alignment/SpectrumSummaryList.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/Spectra/FileSpectrumInfo.cs b/pwiz_tools/Skyline/Model/Results/Spectra/FileSpectrumInfo.cs index 503c5ac2a69..b61f7f41212 100644 --- a/pwiz_tools/Skyline/Model/Results/Spectra/FileSpectrumInfo.cs +++ b/pwiz_tools/Skyline/Model/Results/Spectra/FileSpectrumInfo.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/Spectra/ResultFileMetaData.cs b/pwiz_tools/Skyline/Model/Results/Spectra/ResultFileMetaData.cs index d06f583ccbf..7e49287f113 100644 --- a/pwiz_tools/Skyline/Model/Results/Spectra/ResultFileMetaData.cs +++ b/pwiz_tools/Skyline/Model/Results/Spectra/ResultFileMetaData.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/Spectra/SpectraResources.designer.cs b/pwiz_tools/Skyline/Model/Results/Spectra/SpectraResources.designer.cs index cb254eb6ae3..b285ba4830c 100644 --- a/pwiz_tools/Skyline/Model/Results/Spectra/SpectraResources.designer.cs +++ b/pwiz_tools/Skyline/Model/Results/Spectra/SpectraResources.designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Model/Results/Spectra/SpectrumClass.cs b/pwiz_tools/Skyline/Model/Results/Spectra/SpectrumClass.cs index baabc70decb..f813298dcbe 100644 --- a/pwiz_tools/Skyline/Model/Results/Spectra/SpectrumClass.cs +++ b/pwiz_tools/Skyline/Model/Results/Spectra/SpectrumClass.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/Spectra/SpectrumClassColumn.cs b/pwiz_tools/Skyline/Model/Results/Spectra/SpectrumClassColumn.cs index 94047fb5c1c..36957c4a986 100644 --- a/pwiz_tools/Skyline/Model/Results/Spectra/SpectrumClassColumn.cs +++ b/pwiz_tools/Skyline/Model/Results/Spectra/SpectrumClassColumn.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/Spectra/SpectrumClassFilter.cs b/pwiz_tools/Skyline/Model/Results/Spectra/SpectrumClassFilter.cs index 488281c7199..dbb9e5add85 100644 --- a/pwiz_tools/Skyline/Model/Results/Spectra/SpectrumClassFilter.cs +++ b/pwiz_tools/Skyline/Model/Results/Spectra/SpectrumClassFilter.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/Spectra/SpectrumClassFilters.cs b/pwiz_tools/Skyline/Model/Results/Spectra/SpectrumClassFilters.cs index 6ef7314361d..418ecca7d71 100644 --- a/pwiz_tools/Skyline/Model/Results/Spectra/SpectrumClassFilters.cs +++ b/pwiz_tools/Skyline/Model/Results/Spectra/SpectrumClassFilters.cs @@ -1,4 +1,4 @@ -using System.Collections.Generic; +using System.Collections.Generic; using System.Linq; using pwiz.Common.Collections; using pwiz.Common.DataBinding; diff --git a/pwiz_tools/Skyline/Model/Results/Spectra/SpectrumClassKey.cs b/pwiz_tools/Skyline/Model/Results/Spectra/SpectrumClassKey.cs index 9c0da2343fa..444b3d7f35d 100644 --- a/pwiz_tools/Skyline/Model/Results/Spectra/SpectrumClassKey.cs +++ b/pwiz_tools/Skyline/Model/Results/Spectra/SpectrumClassKey.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/Spectra/SpectrumFilterAutoComplete.cs b/pwiz_tools/Skyline/Model/Results/Spectra/SpectrumFilterAutoComplete.cs index 04cfb742c26..8ca9a28bfd7 100644 --- a/pwiz_tools/Skyline/Model/Results/Spectra/SpectrumFilterAutoComplete.cs +++ b/pwiz_tools/Skyline/Model/Results/Spectra/SpectrumFilterAutoComplete.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/Spectra/SpectrumMetadataList.cs b/pwiz_tools/Skyline/Model/Results/Spectra/SpectrumMetadataList.cs index 4d4de585cc5..7f9480d946e 100644 --- a/pwiz_tools/Skyline/Model/Results/Spectra/SpectrumMetadataList.cs +++ b/pwiz_tools/Skyline/Model/Results/Spectra/SpectrumMetadataList.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/Spectra/SpectrumMetadatas.cs b/pwiz_tools/Skyline/Model/Results/Spectra/SpectrumMetadatas.cs index e61da45707d..112ee424265 100644 --- a/pwiz_tools/Skyline/Model/Results/Spectra/SpectrumMetadatas.cs +++ b/pwiz_tools/Skyline/Model/Results/Spectra/SpectrumMetadatas.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/Spectra/SpectrumPrecursors.cs b/pwiz_tools/Skyline/Model/Results/Spectra/SpectrumPrecursors.cs index c16e4a2f380..64af286f80d 100644 --- a/pwiz_tools/Skyline/Model/Results/Spectra/SpectrumPrecursors.cs +++ b/pwiz_tools/Skyline/Model/Results/Spectra/SpectrumPrecursors.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/SpectraChromDataProvider.cs b/pwiz_tools/Skyline/Model/Results/SpectraChromDataProvider.cs index 68da57a6045..4aafd457ac6 100644 --- a/pwiz_tools/Skyline/Model/Results/SpectraChromDataProvider.cs +++ b/pwiz_tools/Skyline/Model/Results/SpectraChromDataProvider.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/SpectrumFilter.cs b/pwiz_tools/Skyline/Model/Results/SpectrumFilter.cs index 91f2dd566a1..19f16d8667b 100644 --- a/pwiz_tools/Skyline/Model/Results/SpectrumFilter.cs +++ b/pwiz_tools/Skyline/Model/Results/SpectrumFilter.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/SpectrumFilterPair.cs b/pwiz_tools/Skyline/Model/Results/SpectrumFilterPair.cs index 157ad377b2d..f44af4e9e9f 100644 --- a/pwiz_tools/Skyline/Model/Results/SpectrumFilterPair.cs +++ b/pwiz_tools/Skyline/Model/Results/SpectrumFilterPair.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/TimeIntensities.cs b/pwiz_tools/Skyline/Model/Results/TimeIntensities.cs index 68887121885..7a1999d14f9 100644 --- a/pwiz_tools/Skyline/Model/Results/TimeIntensities.cs +++ b/pwiz_tools/Skyline/Model/Results/TimeIntensities.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/TimeIntensitiesGroup.cs b/pwiz_tools/Skyline/Model/Results/TimeIntensitiesGroup.cs index 9a26cd4828f..b042f0d55e7 100644 --- a/pwiz_tools/Skyline/Model/Results/TimeIntensitiesGroup.cs +++ b/pwiz_tools/Skyline/Model/Results/TimeIntensitiesGroup.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/TimeIntervals.cs b/pwiz_tools/Skyline/Model/Results/TimeIntervals.cs index 341ded1ecde..744c4e38a1d 100644 --- a/pwiz_tools/Skyline/Model/Results/TimeIntervals.cs +++ b/pwiz_tools/Skyline/Model/Results/TimeIntervals.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/TriggeredAcquisition.cs b/pwiz_tools/Skyline/Model/Results/TriggeredAcquisition.cs index 05ce45e3f4f..618247a31be 100644 --- a/pwiz_tools/Skyline/Model/Results/TriggeredAcquisition.cs +++ b/pwiz_tools/Skyline/Model/Results/TriggeredAcquisition.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Results/VendorIssueHelper.cs b/pwiz_tools/Skyline/Model/Results/VendorIssueHelper.cs index 28d611f7897..195ba878faf 100644 --- a/pwiz_tools/Skyline/Model/Results/VendorIssueHelper.cs +++ b/pwiz_tools/Skyline/Model/Results/VendorIssueHelper.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/RetentionTimes/Aligner.cs b/pwiz_tools/Skyline/Model/RetentionTimes/Aligner.cs index 70a8d6a4dce..44edb2626c4 100644 --- a/pwiz_tools/Skyline/Model/RetentionTimes/Aligner.cs +++ b/pwiz_tools/Skyline/Model/RetentionTimes/Aligner.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Max Horowitz-Gelb , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/RetentionTimes/AlignmentFunction.cs b/pwiz_tools/Skyline/Model/RetentionTimes/AlignmentFunction.cs index ade83b22b24..ae8e30458b9 100644 --- a/pwiz_tools/Skyline/Model/RetentionTimes/AlignmentFunction.cs +++ b/pwiz_tools/Skyline/Model/RetentionTimes/AlignmentFunction.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/RetentionTimes/AlignmentTarget.cs b/pwiz_tools/Skyline/Model/RetentionTimes/AlignmentTarget.cs index fabc444d899..5d23f458013 100644 --- a/pwiz_tools/Skyline/Model/RetentionTimes/AlignmentTarget.cs +++ b/pwiz_tools/Skyline/Model/RetentionTimes/AlignmentTarget.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/RetentionTimes/AlignmentTargetSpec.cs b/pwiz_tools/Skyline/Model/RetentionTimes/AlignmentTargetSpec.cs index fd6012afe21..f85b1933cb6 100644 --- a/pwiz_tools/Skyline/Model/RetentionTimes/AlignmentTargetSpec.cs +++ b/pwiz_tools/Skyline/Model/RetentionTimes/AlignmentTargetSpec.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/RetentionTimes/Alignments.cs b/pwiz_tools/Skyline/Model/RetentionTimes/Alignments.cs index 0e3a14e5588..8f45c7cfd94 100644 --- a/pwiz_tools/Skyline/Model/RetentionTimes/Alignments.cs +++ b/pwiz_tools/Skyline/Model/RetentionTimes/Alignments.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/RetentionTimes/DocumentRetentionTimes.cs b/pwiz_tools/Skyline/Model/RetentionTimes/DocumentRetentionTimes.cs index ff4376bb833..56c94d0d789 100644 --- a/pwiz_tools/Skyline/Model/RetentionTimes/DocumentRetentionTimes.cs +++ b/pwiz_tools/Skyline/Model/RetentionTimes/DocumentRetentionTimes.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/RetentionTimes/KdeAligner.cs b/pwiz_tools/Skyline/Model/RetentionTimes/KdeAligner.cs index 468bd156eb3..4895b1f394b 100644 --- a/pwiz_tools/Skyline/Model/RetentionTimes/KdeAligner.cs +++ b/pwiz_tools/Skyline/Model/RetentionTimes/KdeAligner.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Max Horowitz-Gelb , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/RetentionTimes/LibraryAlignment.cs b/pwiz_tools/Skyline/Model/RetentionTimes/LibraryAlignment.cs index 0d31e798468..1a79d0fad80 100644 --- a/pwiz_tools/Skyline/Model/RetentionTimes/LibraryAlignment.cs +++ b/pwiz_tools/Skyline/Model/RetentionTimes/LibraryAlignment.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/RetentionTimes/LinearAligner.cs b/pwiz_tools/Skyline/Model/RetentionTimes/LinearAligner.cs index 061cc790986..d28024d8e94 100644 --- a/pwiz_tools/Skyline/Model/RetentionTimes/LinearAligner.cs +++ b/pwiz_tools/Skyline/Model/RetentionTimes/LinearAligner.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/RetentionTimes/LoessAligner.cs b/pwiz_tools/Skyline/Model/RetentionTimes/LoessAligner.cs index 49389ea4d6c..facef92e78e 100644 --- a/pwiz_tools/Skyline/Model/RetentionTimes/LoessAligner.cs +++ b/pwiz_tools/Skyline/Model/RetentionTimes/LoessAligner.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Max Horowitz-Gelb , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/RetentionTimes/PeakImputation/ImputedPeak.cs b/pwiz_tools/Skyline/Model/RetentionTimes/PeakImputation/ImputedPeak.cs index b6313af3ee8..c76f517063b 100644 --- a/pwiz_tools/Skyline/Model/RetentionTimes/PeakImputation/ImputedPeak.cs +++ b/pwiz_tools/Skyline/Model/RetentionTimes/PeakImputation/ImputedPeak.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/RetentionTimes/PeakImputation/PeakBoundaryImputer.cs b/pwiz_tools/Skyline/Model/RetentionTimes/PeakImputation/PeakBoundaryImputer.cs index 7cb1cca11d4..33ddec33d2f 100644 --- a/pwiz_tools/Skyline/Model/RetentionTimes/PeakImputation/PeakBoundaryImputer.cs +++ b/pwiz_tools/Skyline/Model/RetentionTimes/PeakImputation/PeakBoundaryImputer.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/RetentionTimes/PiecewiseLinearMap.cs b/pwiz_tools/Skyline/Model/RetentionTimes/PiecewiseLinearMap.cs index 0eb5cc6eddc..17b866fa147 100644 --- a/pwiz_tools/Skyline/Model/RetentionTimes/PiecewiseLinearMap.cs +++ b/pwiz_tools/Skyline/Model/RetentionTimes/PiecewiseLinearMap.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/RetentionTimes/RTPeptideValue.cs b/pwiz_tools/Skyline/Model/RetentionTimes/RTPeptideValue.cs index a999bba6db6..21693790acc 100644 --- a/pwiz_tools/Skyline/Model/RetentionTimes/RTPeptideValue.cs +++ b/pwiz_tools/Skyline/Model/RetentionTimes/RTPeptideValue.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/RetentionTimes/ResultFileAlignments.cs b/pwiz_tools/Skyline/Model/RetentionTimes/ResultFileAlignments.cs index 694aa273456..b14ca5f5621 100644 --- a/pwiz_tools/Skyline/Model/RetentionTimes/ResultFileAlignments.cs +++ b/pwiz_tools/Skyline/Model/RetentionTimes/ResultFileAlignments.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/RetentionTimes/RetentionTimeManager.cs b/pwiz_tools/Skyline/Model/RetentionTimes/RetentionTimeManager.cs index 7f355053a05..a87f44f2436 100644 --- a/pwiz_tools/Skyline/Model/RetentionTimes/RetentionTimeManager.cs +++ b/pwiz_tools/Skyline/Model/RetentionTimes/RetentionTimeManager.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/RetentionTimes/RetentionTimeSource.cs b/pwiz_tools/Skyline/Model/RetentionTimes/RetentionTimeSource.cs index 00478fab0a5..09d6634a59d 100644 --- a/pwiz_tools/Skyline/Model/RetentionTimes/RetentionTimeSource.cs +++ b/pwiz_tools/Skyline/Model/RetentionTimes/RetentionTimeSource.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/RetentionTimes/RetentionTimeValues.cs b/pwiz_tools/Skyline/Model/RetentionTimes/RetentionTimeValues.cs index 08b99801573..2ca7aa83b03 100644 --- a/pwiz_tools/Skyline/Model/RetentionTimes/RetentionTimeValues.cs +++ b/pwiz_tools/Skyline/Model/RetentionTimes/RetentionTimeValues.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/RetentionTimes/RetentionTimesResources.Designer.cs b/pwiz_tools/Skyline/Model/RetentionTimes/RetentionTimesResources.Designer.cs index 2aae0970c45..563a344fc95 100644 --- a/pwiz_tools/Skyline/Model/RetentionTimes/RetentionTimesResources.Designer.cs +++ b/pwiz_tools/Skyline/Model/RetentionTimes/RetentionTimesResources.Designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Model/RetentionTimes/RtCalculatorOption.cs b/pwiz_tools/Skyline/Model/RetentionTimes/RtCalculatorOption.cs index 45f1e7b4ed9..587a7d8677d 100644 --- a/pwiz_tools/Skyline/Model/RetentionTimes/RtCalculatorOption.cs +++ b/pwiz_tools/Skyline/Model/RetentionTimes/RtCalculatorOption.cs @@ -1,4 +1,4 @@ -using System.Collections.Generic; +using System.Collections.Generic; using System.Linq; using pwiz.Common.Collections; using pwiz.Skyline.Model.DocSettings; diff --git a/pwiz_tools/Skyline/Model/RgbHexColor.cs b/pwiz_tools/Skyline/Model/RgbHexColor.cs index b3582a49d2d..1ab4296c452 100644 --- a/pwiz_tools/Skyline/Model/RgbHexColor.cs +++ b/pwiz_tools/Skyline/Model/RgbHexColor.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Yuval Boss , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/SearchTool.cs b/pwiz_tools/Skyline/Model/SearchTool.cs index ac399199dca..a06b014c813 100644 --- a/pwiz_tools/Skyline/Model/SearchTool.cs +++ b/pwiz_tools/Skyline/Model/SearchTool.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/SequenceUtil.cs b/pwiz_tools/Skyline/Model/SequenceUtil.cs index 422e994aa9b..4862cfe7466 100644 --- a/pwiz_tools/Skyline/Model/SequenceUtil.cs +++ b/pwiz_tools/Skyline/Model/SequenceUtil.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Serialization/AnnotationScrubber.cs b/pwiz_tools/Skyline/Model/Serialization/AnnotationScrubber.cs index bb9b421adc3..2646bc72147 100644 --- a/pwiz_tools/Skyline/Model/Serialization/AnnotationScrubber.cs +++ b/pwiz_tools/Skyline/Model/Serialization/AnnotationScrubber.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Serialization/CompactFormatOption.cs b/pwiz_tools/Skyline/Model/Serialization/CompactFormatOption.cs index d97f1273921..4af701dd93e 100644 --- a/pwiz_tools/Skyline/Model/Serialization/CompactFormatOption.cs +++ b/pwiz_tools/Skyline/Model/Serialization/CompactFormatOption.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Serialization/DataValues.cs b/pwiz_tools/Skyline/Model/Serialization/DataValues.cs index 04bcc1d298c..ab361ef8509 100644 --- a/pwiz_tools/Skyline/Model/Serialization/DataValues.cs +++ b/pwiz_tools/Skyline/Model/Serialization/DataValues.cs @@ -1,4 +1,4 @@ -using System.ComponentModel; +using System.ComponentModel; using pwiz.Skyline.Model.DocSettings; using pwiz.Skyline.Model.Results; diff --git a/pwiz_tools/Skyline/Model/Serialization/DocumentFormat.cs b/pwiz_tools/Skyline/Model/Serialization/DocumentFormat.cs index 7d118c8cea8..f83fda17006 100644 --- a/pwiz_tools/Skyline/Model/Serialization/DocumentFormat.cs +++ b/pwiz_tools/Skyline/Model/Serialization/DocumentFormat.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Serialization/DocumentReader.cs b/pwiz_tools/Skyline/Model/Serialization/DocumentReader.cs index aa23926a8cc..4da92bf320b 100644 --- a/pwiz_tools/Skyline/Model/Serialization/DocumentReader.cs +++ b/pwiz_tools/Skyline/Model/Serialization/DocumentReader.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Serialization/DocumentSerializer.cs b/pwiz_tools/Skyline/Model/Serialization/DocumentSerializer.cs index 5532e8495e8..8cb20d6cfb8 100644 --- a/pwiz_tools/Skyline/Model/Serialization/DocumentSerializer.cs +++ b/pwiz_tools/Skyline/Model/Serialization/DocumentSerializer.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Serialization/DocumentWriter.cs b/pwiz_tools/Skyline/Model/Serialization/DocumentWriter.cs index ddf563bd409..d1290aba412 100644 --- a/pwiz_tools/Skyline/Model/Serialization/DocumentWriter.cs +++ b/pwiz_tools/Skyline/Model/Serialization/DocumentWriter.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Serialization/Pre372CustomIonTransitionGroupHandler.cs b/pwiz_tools/Skyline/Model/Serialization/Pre372CustomIonTransitionGroupHandler.cs index a90d659c8e0..bd4db7a692b 100644 --- a/pwiz_tools/Skyline/Model/Serialization/Pre372CustomIonTransitionGroupHandler.cs +++ b/pwiz_tools/Skyline/Model/Serialization/Pre372CustomIonTransitionGroupHandler.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Serialization/XmlReadAhead.cs b/pwiz_tools/Skyline/Model/Serialization/XmlReadAhead.cs index 68656a1ebeb..c4a161cf860 100644 --- a/pwiz_tools/Skyline/Model/Serialization/XmlReadAhead.cs +++ b/pwiz_tools/Skyline/Model/Serialization/XmlReadAhead.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/SkylineVersion.cs b/pwiz_tools/Skyline/Model/SkylineVersion.cs index 22e5f92a9d1..af14476d1c5 100644 --- a/pwiz_tools/Skyline/Model/SkylineVersion.cs +++ b/pwiz_tools/Skyline/Model/SkylineVersion.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/SkypFile.cs b/pwiz_tools/Skyline/Model/SkypFile.cs index 9bebb32681d..56b2076f030 100644 --- a/pwiz_tools/Skyline/Model/SkypFile.cs +++ b/pwiz_tools/Skyline/Model/SkypFile.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections.Generic; using System.IO; using System.Linq; diff --git a/pwiz_tools/Skyline/Model/SmallMoleculeTransitionListReader.cs b/pwiz_tools/Skyline/Model/SmallMoleculeTransitionListReader.cs index 8f857d7e9dc..5b29ac7c11c 100644 --- a/pwiz_tools/Skyline/Model/SmallMoleculeTransitionListReader.cs +++ b/pwiz_tools/Skyline/Model/SmallMoleculeTransitionListReader.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/SpectrumProperties.cs b/pwiz_tools/Skyline/Model/SpectrumProperties.cs index 0e51b0222e3..25e93e4a95c 100644 --- a/pwiz_tools/Skyline/Model/SpectrumProperties.cs +++ b/pwiz_tools/Skyline/Model/SpectrumProperties.cs @@ -1,4 +1,4 @@ -using System.ComponentModel; +using System.ComponentModel; using System.IO; using System.Resources; diff --git a/pwiz_tools/Skyline/Model/SpectrumPropertiesResx.Designer.cs b/pwiz_tools/Skyline/Model/SpectrumPropertiesResx.Designer.cs index c21ba3a5dd8..f58cca76c56 100644 --- a/pwiz_tools/Skyline/Model/SpectrumPropertiesResx.Designer.cs +++ b/pwiz_tools/Skyline/Model/SpectrumPropertiesResx.Designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Model/SrmDocument.cs b/pwiz_tools/Skyline/Model/SrmDocument.cs index d82503999d6..1c8500db433 100644 --- a/pwiz_tools/Skyline/Model/SrmDocument.cs +++ b/pwiz_tools/Skyline/Model/SrmDocument.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * @@ -2273,7 +2273,7 @@ public static string GetAuditLogPath(string docPath) public void SerializeToFile(string tempName, string displayName, SkylineVersion skylineVersion, IProgressMonitor progressMonitor) { string hash; - using (var writer = new XmlTextWriter(HashingStream.CreateWriteStream(tempName), Encoding.UTF8)) + using (var writer = new XmlTextWriter(HashingStream.CreateWriteStream(tempName), new UTF8Encoding(false))) // UTF-8 without BOM { writer.Formatting = Formatting.Indented; hash = Serialize(writer, displayName, skylineVersion, progressMonitor); diff --git a/pwiz_tools/Skyline/Model/SrmDocumentSharing.cs b/pwiz_tools/Skyline/Model/SrmDocumentSharing.cs index 5be07a0b8af..b4a18c4c198 100644 --- a/pwiz_tools/Skyline/Model/SrmDocumentSharing.cs +++ b/pwiz_tools/Skyline/Model/SrmDocumentSharing.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/StandardType.cs b/pwiz_tools/Skyline/Model/StandardType.cs index 79a45f484ec..c828a1b99c3 100644 --- a/pwiz_tools/Skyline/Model/StandardType.cs +++ b/pwiz_tools/Skyline/Model/StandardType.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections.Generic; using System.Globalization; using System.Linq; diff --git a/pwiz_tools/Skyline/Model/TargetMap.cs b/pwiz_tools/Skyline/Model/TargetMap.cs index 9215cc18f78..131068e9610 100644 --- a/pwiz_tools/Skyline/Model/TargetMap.cs +++ b/pwiz_tools/Skyline/Model/TargetMap.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/TargetResolver.cs b/pwiz_tools/Skyline/Model/TargetResolver.cs index 541664ed654..cd7cdc12ce2 100644 --- a/pwiz_tools/Skyline/Model/TargetResolver.cs +++ b/pwiz_tools/Skyline/Model/TargetResolver.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Themes/ColorScheme.cs b/pwiz_tools/Skyline/Model/Themes/ColorScheme.cs index fbe7816be78..d2861d6caf6 100644 --- a/pwiz_tools/Skyline/Model/Themes/ColorScheme.cs +++ b/pwiz_tools/Skyline/Model/Themes/ColorScheme.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Yuval Boss , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Tools/PythonInstaller.cs b/pwiz_tools/Skyline/Model/Tools/PythonInstaller.cs index 340f656adcd..3b9481ea95a 100644 --- a/pwiz_tools/Skyline/Model/Tools/PythonInstaller.cs +++ b/pwiz_tools/Skyline/Model/Tools/PythonInstaller.cs @@ -1,4 +1,4 @@ -/* +/* * Author: David Shteynberg , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Tools/ToolDescription.cs b/pwiz_tools/Skyline/Model/Tools/ToolDescription.cs index 72071781dea..abf98934145 100644 --- a/pwiz_tools/Skyline/Model/Tools/ToolDescription.cs +++ b/pwiz_tools/Skyline/Model/Tools/ToolDescription.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Daniel Broudy , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Tools/ToolInstaller.cs b/pwiz_tools/Skyline/Model/Tools/ToolInstaller.cs index 384b8ce61cf..3975398cb5f 100644 --- a/pwiz_tools/Skyline/Model/Tools/ToolInstaller.cs +++ b/pwiz_tools/Skyline/Model/Tools/ToolInstaller.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Daniel Broudy , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Tools/ToolMacros.cs b/pwiz_tools/Skyline/Model/Tools/ToolMacros.cs index 261c0c86c50..d37ea62d32f 100644 --- a/pwiz_tools/Skyline/Model/Tools/ToolMacros.cs +++ b/pwiz_tools/Skyline/Model/Tools/ToolMacros.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Daniel Broudy , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Tools/ToolsResources.designer.cs b/pwiz_tools/Skyline/Model/Tools/ToolsResources.designer.cs index 4bffef9b42f..53b0797f96e 100644 --- a/pwiz_tools/Skyline/Model/Tools/ToolsResources.designer.cs +++ b/pwiz_tools/Skyline/Model/Tools/ToolsResources.designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Model/Transition.cs b/pwiz_tools/Skyline/Model/Transition.cs index 9a4e38aa585..c4ca545a40c 100644 --- a/pwiz_tools/Skyline/Model/Transition.cs +++ b/pwiz_tools/Skyline/Model/Transition.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/TransitionCalc.cs b/pwiz_tools/Skyline/Model/TransitionCalc.cs index 4c7a0d7766f..07217052981 100644 --- a/pwiz_tools/Skyline/Model/TransitionCalc.cs +++ b/pwiz_tools/Skyline/Model/TransitionCalc.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/TransitionDocNode.cs b/pwiz_tools/Skyline/Model/TransitionDocNode.cs index 47fff2a522f..834e41c0c3d 100644 --- a/pwiz_tools/Skyline/Model/TransitionDocNode.cs +++ b/pwiz_tools/Skyline/Model/TransitionDocNode.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/TransitionGroup.cs b/pwiz_tools/Skyline/Model/TransitionGroup.cs index d07200118ab..beb59b2ea93 100644 --- a/pwiz_tools/Skyline/Model/TransitionGroup.cs +++ b/pwiz_tools/Skyline/Model/TransitionGroup.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/TransitionGroupDocNode.cs b/pwiz_tools/Skyline/Model/TransitionGroupDocNode.cs index 57d91445bc8..d66fb35a8d9 100644 --- a/pwiz_tools/Skyline/Model/TransitionGroupDocNode.cs +++ b/pwiz_tools/Skyline/Model/TransitionGroupDocNode.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/TransitionLossMap.cs b/pwiz_tools/Skyline/Model/TransitionLossMap.cs index 706b39660bd..60f4621461c 100644 --- a/pwiz_tools/Skyline/Model/TransitionLossMap.cs +++ b/pwiz_tools/Skyline/Model/TransitionLossMap.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/Undo.cs b/pwiz_tools/Skyline/Model/Undo.cs index 86654de19b3..9985fc52eda 100644 --- a/pwiz_tools/Skyline/Model/Undo.cs +++ b/pwiz_tools/Skyline/Model/Undo.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/V01/Sequence.cs b/pwiz_tools/Skyline/Model/V01/Sequence.cs index 687e024abe8..0c179279bc3 100644 --- a/pwiz_tools/Skyline/Model/V01/Sequence.cs +++ b/pwiz_tools/Skyline/Model/V01/Sequence.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/V01/XmlExport.cs b/pwiz_tools/Skyline/Model/V01/XmlExport.cs index aa57508730c..dfcd6f41b90 100644 --- a/pwiz_tools/Skyline/Model/V01/XmlExport.cs +++ b/pwiz_tools/Skyline/Model/V01/XmlExport.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Model/V01/XmlSrmDocument.cs b/pwiz_tools/Skyline/Model/V01/XmlSrmDocument.cs index 4b4a2dffb96..e54f8f343aa 100644 --- a/pwiz_tools/Skyline/Model/V01/XmlSrmDocument.cs +++ b/pwiz_tools/Skyline/Model/V01/XmlSrmDocument.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Program.cs b/pwiz_tools/Skyline/Program.cs index 296dcdfa06d..5f48af825d1 100644 --- a/pwiz_tools/Skyline/Program.cs +++ b/pwiz_tools/Skyline/Program.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Properties/MetadataRuleSetList.cs b/pwiz_tools/Skyline/Properties/MetadataRuleSetList.cs index 167964d6345..55d6925389a 100644 --- a/pwiz_tools/Skyline/Properties/MetadataRuleSetList.cs +++ b/pwiz_tools/Skyline/Properties/MetadataRuleSetList.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Properties/PropertiesResources.designer.cs b/pwiz_tools/Skyline/Properties/PropertiesResources.designer.cs index 9b10e1e2156..869defcbb72 100644 --- a/pwiz_tools/Skyline/Properties/PropertiesResources.designer.cs +++ b/pwiz_tools/Skyline/Properties/PropertiesResources.designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Properties/RemoteAccountList.cs b/pwiz_tools/Skyline/Properties/RemoteAccountList.cs index ed494099841..6d8196ee6bd 100644 --- a/pwiz_tools/Skyline/Properties/RemoteAccountList.cs +++ b/pwiz_tools/Skyline/Properties/RemoteAccountList.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Properties/Resources.Designer.cs b/pwiz_tools/Skyline/Properties/Resources.Designer.cs index 48f2ea36e99..4100a8fc8bc 100644 --- a/pwiz_tools/Skyline/Properties/Resources.Designer.cs +++ b/pwiz_tools/Skyline/Properties/Resources.Designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Properties/Settings.Designer.cs b/pwiz_tools/Skyline/Properties/Settings.Designer.cs index 1b3b88df094..467709ed2da 100644 --- a/pwiz_tools/Skyline/Properties/Settings.Designer.cs +++ b/pwiz_tools/Skyline/Properties/Settings.Designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/Properties/Settings.cs b/pwiz_tools/Skyline/Properties/Settings.cs index 32ca79f406e..4a2fced8285 100644 --- a/pwiz_tools/Skyline/Properties/Settings.cs +++ b/pwiz_tools/Skyline/Properties/Settings.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Properties/app.manifest b/pwiz_tools/Skyline/Properties/app.manifest index e3acc5a3f37..a4258a238be 100644 --- a/pwiz_tools/Skyline/Properties/app.manifest +++ b/pwiz_tools/Skyline/Properties/app.manifest @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/ProtocolBuffers/ChromatogramGroupData.proto b/pwiz_tools/Skyline/ProtocolBuffers/ChromatogramGroupData.proto index 6da162d989b..ad8d18676ce 100644 --- a/pwiz_tools/Skyline/ProtocolBuffers/ChromatogramGroupData.proto +++ b/pwiz_tools/Skyline/ProtocolBuffers/ChromatogramGroupData.proto @@ -1,4 +1,4 @@ -syntax = "proto3"; +syntax = "proto3"; import "google/protobuf/wrappers.proto"; option csharp_namespace = "pwiz.Skyline.Model.Results.ProtoBuf"; option java_package = "org.labkey.targetedms.parser.proto"; diff --git a/pwiz_tools/Skyline/ProtocolBuffers/SkylineDocument.proto b/pwiz_tools/Skyline/ProtocolBuffers/SkylineDocument.proto index 740e52ecd60..cb325e0e254 100644 --- a/pwiz_tools/Skyline/ProtocolBuffers/SkylineDocument.proto +++ b/pwiz_tools/Skyline/ProtocolBuffers/SkylineDocument.proto @@ -1,4 +1,4 @@ -syntax = "proto3"; +syntax = "proto3"; import "google/protobuf/wrappers.proto"; option csharp_namespace = "pwiz.Skyline.Model.Serialization"; option java_package = "org.labkey.targetedms.parser.proto"; diff --git a/pwiz_tools/Skyline/SettingsUI/AddModificationsDlg.Designer.cs b/pwiz_tools/Skyline/SettingsUI/AddModificationsDlg.Designer.cs index 7a8a347ac82..f14a67ba419 100644 --- a/pwiz_tools/Skyline/SettingsUI/AddModificationsDlg.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/AddModificationsDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI +namespace pwiz.Skyline.SettingsUI { partial class AddModificationsDlg { diff --git a/pwiz_tools/Skyline/SettingsUI/AddModificationsDlg.cs b/pwiz_tools/Skyline/SettingsUI/AddModificationsDlg.cs index 5926346cf9c..c49c28e0fee 100644 --- a/pwiz_tools/Skyline/SettingsUI/AddModificationsDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/AddModificationsDlg.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections.Generic; using System.Linq; using System.Windows.Forms; diff --git a/pwiz_tools/Skyline/SettingsUI/AddPathsDlg.Designer.cs b/pwiz_tools/Skyline/SettingsUI/AddPathsDlg.Designer.cs index b77c3019908..e3a44914f71 100644 --- a/pwiz_tools/Skyline/SettingsUI/AddPathsDlg.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/AddPathsDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI +namespace pwiz.Skyline.SettingsUI { partial class AddPathsDlg { diff --git a/pwiz_tools/Skyline/SettingsUI/AddPathsDlg.cs b/pwiz_tools/Skyline/SettingsUI/AddPathsDlg.cs index 3b7e3f8530b..91e591ae8c6 100644 --- a/pwiz_tools/Skyline/SettingsUI/AddPathsDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/AddPathsDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/AddRetentionTimePredictorDlg.Designer.cs b/pwiz_tools/Skyline/SettingsUI/AddRetentionTimePredictorDlg.Designer.cs index 22e82d4d5d6..1e945931de0 100644 --- a/pwiz_tools/Skyline/SettingsUI/AddRetentionTimePredictorDlg.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/AddRetentionTimePredictorDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI +namespace pwiz.Skyline.SettingsUI { partial class AddRetentionTimePredictorDlg { diff --git a/pwiz_tools/Skyline/SettingsUI/AddRetentionTimePredictorDlg.cs b/pwiz_tools/Skyline/SettingsUI/AddRetentionTimePredictorDlg.cs index ad670ff88f8..a65440679e7 100644 --- a/pwiz_tools/Skyline/SettingsUI/AddRetentionTimePredictorDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/AddRetentionTimePredictorDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/BuildBackgroundProteomeDlg.cs b/pwiz_tools/Skyline/SettingsUI/BuildBackgroundProteomeDlg.cs index f4f49c93621..43329d00d83 100644 --- a/pwiz_tools/Skyline/SettingsUI/BuildBackgroundProteomeDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/BuildBackgroundProteomeDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/BuildLibraryDlg.Designer.cs b/pwiz_tools/Skyline/SettingsUI/BuildLibraryDlg.Designer.cs index a7da08a48ea..e4a7121cf72 100644 --- a/pwiz_tools/Skyline/SettingsUI/BuildLibraryDlg.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/BuildLibraryDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI +namespace pwiz.Skyline.SettingsUI { partial class BuildLibraryDlg { diff --git a/pwiz_tools/Skyline/SettingsUI/BuildLibraryDlg.cs b/pwiz_tools/Skyline/SettingsUI/BuildLibraryDlg.cs index e91324e7966..da5a151e188 100644 --- a/pwiz_tools/Skyline/SettingsUI/BuildLibraryDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/BuildLibraryDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/CalculateIsolationSchemeDlg.Designer.cs b/pwiz_tools/Skyline/SettingsUI/CalculateIsolationSchemeDlg.Designer.cs index ec81ae4ae18..5b4f794e5e0 100644 --- a/pwiz_tools/Skyline/SettingsUI/CalculateIsolationSchemeDlg.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/CalculateIsolationSchemeDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI +namespace pwiz.Skyline.SettingsUI { partial class CalculateIsolationSchemeDlg { diff --git a/pwiz_tools/Skyline/SettingsUI/CalculateIsolationSchemeDlg.cs b/pwiz_tools/Skyline/SettingsUI/CalculateIsolationSchemeDlg.cs index 7dea4544a3d..6b69aba3d67 100644 --- a/pwiz_tools/Skyline/SettingsUI/CalculateIsolationSchemeDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/CalculateIsolationSchemeDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/DefineAnnotationDlg.cs b/pwiz_tools/Skyline/SettingsUI/DefineAnnotationDlg.cs index 1cd770f0ab9..a78b61db6ed 100644 --- a/pwiz_tools/Skyline/SettingsUI/DefineAnnotationDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/DefineAnnotationDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/DiaIsolationWindowsGraphForm.Designer.cs b/pwiz_tools/Skyline/SettingsUI/DiaIsolationWindowsGraphForm.Designer.cs index 9dd612a4aab..1c4df4f7a56 100644 --- a/pwiz_tools/Skyline/SettingsUI/DiaIsolationWindowsGraphForm.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/DiaIsolationWindowsGraphForm.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI +namespace pwiz.Skyline.SettingsUI { partial class DiaIsolationWindowsGraphForm { diff --git a/pwiz_tools/Skyline/SettingsUI/DiaIsolationWindowsGraphForm.cs b/pwiz_tools/Skyline/SettingsUI/DiaIsolationWindowsGraphForm.cs index 548f8193b79..ed89589b82e 100644 --- a/pwiz_tools/Skyline/SettingsUI/DiaIsolationWindowsGraphForm.cs +++ b/pwiz_tools/Skyline/SettingsUI/DiaIsolationWindowsGraphForm.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Max Horowitz-Gelb , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/DocumentSettingsDlg.cs b/pwiz_tools/Skyline/SettingsUI/DocumentSettingsDlg.cs index 5e6748e3366..e5a9b2ed565 100644 --- a/pwiz_tools/Skyline/SettingsUI/DocumentSettingsDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/DocumentSettingsDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/EditCEDlg.Designer.cs b/pwiz_tools/Skyline/SettingsUI/EditCEDlg.Designer.cs index d2b98d6fad5..0fd6bd78f93 100644 --- a/pwiz_tools/Skyline/SettingsUI/EditCEDlg.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/EditCEDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI +namespace pwiz.Skyline.SettingsUI { partial class EditCEDlg { diff --git a/pwiz_tools/Skyline/SettingsUI/EditCEDlg.cs b/pwiz_tools/Skyline/SettingsUI/EditCEDlg.cs index e25962148e0..01079b71e17 100644 --- a/pwiz_tools/Skyline/SettingsUI/EditCEDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/EditCEDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/EditCoVDlg.Designer.cs b/pwiz_tools/Skyline/SettingsUI/EditCoVDlg.Designer.cs index 755c99706c0..22751b8877e 100644 --- a/pwiz_tools/Skyline/SettingsUI/EditCoVDlg.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/EditCoVDlg.Designer.cs @@ -1,4 +1,4 @@ -using pwiz.Skyline.Model.DocSettings; +using pwiz.Skyline.Model.DocSettings; namespace pwiz.Skyline.SettingsUI { diff --git a/pwiz_tools/Skyline/SettingsUI/EditCoVDlg.cs b/pwiz_tools/Skyline/SettingsUI/EditCoVDlg.cs index a3d336387b4..f5802a76c4a 100644 --- a/pwiz_tools/Skyline/SettingsUI/EditCoVDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/EditCoVDlg.cs @@ -1,4 +1,4 @@ -using System.Collections.Generic; +using System.Collections.Generic; using System.Globalization; using System.Windows.Forms; using pwiz.Common.SystemUtil; diff --git a/pwiz_tools/Skyline/SettingsUI/EditCustomMoleculeDlg.Designer.cs b/pwiz_tools/Skyline/SettingsUI/EditCustomMoleculeDlg.Designer.cs index a5d74019f69..f07868dcf39 100644 --- a/pwiz_tools/Skyline/SettingsUI/EditCustomMoleculeDlg.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/EditCustomMoleculeDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI +namespace pwiz.Skyline.SettingsUI { partial class EditCustomMoleculeDlg { diff --git a/pwiz_tools/Skyline/SettingsUI/EditCustomMoleculeDlg.cs b/pwiz_tools/Skyline/SettingsUI/EditCustomMoleculeDlg.cs index 4a15020f0ff..cccb5172a7c 100644 --- a/pwiz_tools/Skyline/SettingsUI/EditCustomMoleculeDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/EditCustomMoleculeDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Max Horowitz-Gelb , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/EditDPDlg.Designer.cs b/pwiz_tools/Skyline/SettingsUI/EditDPDlg.Designer.cs index 88a1e21470f..cec1f76b78a 100644 --- a/pwiz_tools/Skyline/SettingsUI/EditDPDlg.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/EditDPDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI +namespace pwiz.Skyline.SettingsUI { partial class EditDPDlg { diff --git a/pwiz_tools/Skyline/SettingsUI/EditDPDlg.cs b/pwiz_tools/Skyline/SettingsUI/EditDPDlg.cs index ff2b606f941..e9a5b965fa7 100644 --- a/pwiz_tools/Skyline/SettingsUI/EditDPDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/EditDPDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/EditEnzymeDlg.Designer.cs b/pwiz_tools/Skyline/SettingsUI/EditEnzymeDlg.Designer.cs index de4b9ece272..5c29586b7e7 100644 --- a/pwiz_tools/Skyline/SettingsUI/EditEnzymeDlg.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/EditEnzymeDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI +namespace pwiz.Skyline.SettingsUI { partial class EditEnzymeDlg { diff --git a/pwiz_tools/Skyline/SettingsUI/EditEnzymeDlg.cs b/pwiz_tools/Skyline/SettingsUI/EditEnzymeDlg.cs index dbf599ea298..04cd91a4516 100644 --- a/pwiz_tools/Skyline/SettingsUI/EditEnzymeDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/EditEnzymeDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/EditExclusionDlg.Designer.cs b/pwiz_tools/Skyline/SettingsUI/EditExclusionDlg.Designer.cs index a0db8dc9510..36c622fdd30 100644 --- a/pwiz_tools/Skyline/SettingsUI/EditExclusionDlg.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/EditExclusionDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI +namespace pwiz.Skyline.SettingsUI { partial class EditExclusionDlg { diff --git a/pwiz_tools/Skyline/SettingsUI/EditExclusionDlg.cs b/pwiz_tools/Skyline/SettingsUI/EditExclusionDlg.cs index 95d460f756a..4813d97fd04 100644 --- a/pwiz_tools/Skyline/SettingsUI/EditExclusionDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/EditExclusionDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/EditFragmentLossDlg.Designer.cs b/pwiz_tools/Skyline/SettingsUI/EditFragmentLossDlg.Designer.cs index 67d9364acaf..1e5be1009a1 100644 --- a/pwiz_tools/Skyline/SettingsUI/EditFragmentLossDlg.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/EditFragmentLossDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI +namespace pwiz.Skyline.SettingsUI { partial class EditFragmentLossDlg { diff --git a/pwiz_tools/Skyline/SettingsUI/EditFragmentLossDlg.cs b/pwiz_tools/Skyline/SettingsUI/EditFragmentLossDlg.cs index 5a1880f42bd..e334a74224a 100644 --- a/pwiz_tools/Skyline/SettingsUI/EditFragmentLossDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/EditFragmentLossDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/EditIsolationSchemeDlg.Designer.cs b/pwiz_tools/Skyline/SettingsUI/EditIsolationSchemeDlg.Designer.cs index 98c3d78cebf..d7c555cef41 100644 --- a/pwiz_tools/Skyline/SettingsUI/EditIsolationSchemeDlg.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/EditIsolationSchemeDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI +namespace pwiz.Skyline.SettingsUI { partial class EditIsolationSchemeDlg { diff --git a/pwiz_tools/Skyline/SettingsUI/EditIsolationSchemeDlg.cs b/pwiz_tools/Skyline/SettingsUI/EditIsolationSchemeDlg.cs index 51bb355cc66..89c5a610ce7 100644 --- a/pwiz_tools/Skyline/SettingsUI/EditIsolationSchemeDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/EditIsolationSchemeDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/EditIsolationWindow.cs b/pwiz_tools/Skyline/SettingsUI/EditIsolationWindow.cs index 7542327b405..ddfc368c50f 100644 --- a/pwiz_tools/Skyline/SettingsUI/EditIsolationWindow.cs +++ b/pwiz_tools/Skyline/SettingsUI/EditIsolationWindow.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/EditIsotopeEnrichmentDlg.Designer.cs b/pwiz_tools/Skyline/SettingsUI/EditIsotopeEnrichmentDlg.Designer.cs index ad29ad75a23..a0c65613c12 100644 --- a/pwiz_tools/Skyline/SettingsUI/EditIsotopeEnrichmentDlg.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/EditIsotopeEnrichmentDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI +namespace pwiz.Skyline.SettingsUI { partial class EditIsotopeEnrichmentDlg { diff --git a/pwiz_tools/Skyline/SettingsUI/EditIsotopeEnrichmentDlg.cs b/pwiz_tools/Skyline/SettingsUI/EditIsotopeEnrichmentDlg.cs index 4dd3988d113..70b31ab0d30 100644 --- a/pwiz_tools/Skyline/SettingsUI/EditIsotopeEnrichmentDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/EditIsotopeEnrichmentDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/EditLabelTypeListDlg.Designer.cs b/pwiz_tools/Skyline/SettingsUI/EditLabelTypeListDlg.Designer.cs index ff35908700e..9ffec6b4e02 100644 --- a/pwiz_tools/Skyline/SettingsUI/EditLabelTypeListDlg.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/EditLabelTypeListDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI +namespace pwiz.Skyline.SettingsUI { partial class EditLabelTypeListDlg { diff --git a/pwiz_tools/Skyline/SettingsUI/EditLabelTypeListDlg.cs b/pwiz_tools/Skyline/SettingsUI/EditLabelTypeListDlg.cs index 25604ec6b99..6883cad0c41 100644 --- a/pwiz_tools/Skyline/SettingsUI/EditLabelTypeListDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/EditLabelTypeListDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/EditLibraryDlg.Designer.cs b/pwiz_tools/Skyline/SettingsUI/EditLibraryDlg.Designer.cs index 370a95fb713..90e7a9b0584 100644 --- a/pwiz_tools/Skyline/SettingsUI/EditLibraryDlg.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/EditLibraryDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI +namespace pwiz.Skyline.SettingsUI { partial class EditLibraryDlg { diff --git a/pwiz_tools/Skyline/SettingsUI/EditLibraryDlg.cs b/pwiz_tools/Skyline/SettingsUI/EditLibraryDlg.cs index 02f09e3bc8e..89f5135f663 100644 --- a/pwiz_tools/Skyline/SettingsUI/EditLibraryDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/EditLibraryDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/EditListDlg.Designer.cs b/pwiz_tools/Skyline/SettingsUI/EditListDlg.Designer.cs index 1ef53ddf3c8..d3f7a8498a8 100644 --- a/pwiz_tools/Skyline/SettingsUI/EditListDlg.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/EditListDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI +namespace pwiz.Skyline.SettingsUI { sealed partial class EditListDlg { diff --git a/pwiz_tools/Skyline/SettingsUI/EditListDlg.cs b/pwiz_tools/Skyline/SettingsUI/EditListDlg.cs index c1de556b5a7..7a3cf2cf34e 100644 --- a/pwiz_tools/Skyline/SettingsUI/EditListDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/EditListDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/EditMeasuredIonDlg.Designer.cs b/pwiz_tools/Skyline/SettingsUI/EditMeasuredIonDlg.Designer.cs index bac6acc770a..6e6a9b70ca5 100644 --- a/pwiz_tools/Skyline/SettingsUI/EditMeasuredIonDlg.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/EditMeasuredIonDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI +namespace pwiz.Skyline.SettingsUI { partial class EditMeasuredIonDlg { diff --git a/pwiz_tools/Skyline/SettingsUI/EditMeasuredIonDlg.cs b/pwiz_tools/Skyline/SettingsUI/EditMeasuredIonDlg.cs index 66e0522d859..4393c090420 100644 --- a/pwiz_tools/Skyline/SettingsUI/EditMeasuredIonDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/EditMeasuredIonDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/EditOptimizationLibraryDlg.Designer.cs b/pwiz_tools/Skyline/SettingsUI/EditOptimizationLibraryDlg.Designer.cs index b726d8e45a8..fae0dd9e9db 100644 --- a/pwiz_tools/Skyline/SettingsUI/EditOptimizationLibraryDlg.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/EditOptimizationLibraryDlg.Designer.cs @@ -1,4 +1,4 @@ -using pwiz.Skyline.Controls; +using pwiz.Skyline.Controls; namespace pwiz.Skyline.SettingsUI { diff --git a/pwiz_tools/Skyline/SettingsUI/EditOptimizationLibraryDlg.cs b/pwiz_tools/Skyline/SettingsUI/EditOptimizationLibraryDlg.cs index 050a43495bc..0e13e14640f 100644 --- a/pwiz_tools/Skyline/SettingsUI/EditOptimizationLibraryDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/EditOptimizationLibraryDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/EditPeakScoringModelDlg.Designer.cs b/pwiz_tools/Skyline/SettingsUI/EditPeakScoringModelDlg.Designer.cs index 208610f1e55..52007db57d8 100644 --- a/pwiz_tools/Skyline/SettingsUI/EditPeakScoringModelDlg.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/EditPeakScoringModelDlg.Designer.cs @@ -1,4 +1,4 @@ -using pwiz.Skyline.Util; +using pwiz.Skyline.Util; namespace pwiz.Skyline.SettingsUI { diff --git a/pwiz_tools/Skyline/SettingsUI/EditPeakScoringModelDlg.cs b/pwiz_tools/Skyline/SettingsUI/EditPeakScoringModelDlg.cs index 599a64736fa..7a2be7fefab 100644 --- a/pwiz_tools/Skyline/SettingsUI/EditPeakScoringModelDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/EditPeakScoringModelDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/EditRTDlg.Designer.cs b/pwiz_tools/Skyline/SettingsUI/EditRTDlg.Designer.cs index 1796add894c..8809efeb4fe 100644 --- a/pwiz_tools/Skyline/SettingsUI/EditRTDlg.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/EditRTDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI +namespace pwiz.Skyline.SettingsUI { partial class EditRTDlg { diff --git a/pwiz_tools/Skyline/SettingsUI/EditRTDlg.cs b/pwiz_tools/Skyline/SettingsUI/EditRTDlg.cs index ceb52f56470..f17803ef1bc 100644 --- a/pwiz_tools/Skyline/SettingsUI/EditRTDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/EditRTDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/EditStaticModDlg.Designer.cs b/pwiz_tools/Skyline/SettingsUI/EditStaticModDlg.Designer.cs index 63b46f462a4..77a680c984d 100644 --- a/pwiz_tools/Skyline/SettingsUI/EditStaticModDlg.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/EditStaticModDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI +namespace pwiz.Skyline.SettingsUI { partial class EditStaticModDlg { diff --git a/pwiz_tools/Skyline/SettingsUI/EditStaticModDlg.cs b/pwiz_tools/Skyline/SettingsUI/EditStaticModDlg.cs index 711d4d73c93..31b48eb33e9 100644 --- a/pwiz_tools/Skyline/SettingsUI/EditStaticModDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/EditStaticModDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/FilterMidasLibraryDlg.Designer.cs b/pwiz_tools/Skyline/SettingsUI/FilterMidasLibraryDlg.Designer.cs index 64271ce1715..95687494515 100644 --- a/pwiz_tools/Skyline/SettingsUI/FilterMidasLibraryDlg.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/FilterMidasLibraryDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI +namespace pwiz.Skyline.SettingsUI { partial class FilterMidasLibraryDlg { diff --git a/pwiz_tools/Skyline/SettingsUI/FilterMidasLibraryDlg.cs b/pwiz_tools/Skyline/SettingsUI/FilterMidasLibraryDlg.cs index 639f99d1ff6..5a2813237e9 100644 --- a/pwiz_tools/Skyline/SettingsUI/FilterMidasLibraryDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/FilterMidasLibraryDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/FormulaBox.Designer.cs b/pwiz_tools/Skyline/SettingsUI/FormulaBox.Designer.cs index 3031bb26aad..d569367e82b 100644 --- a/pwiz_tools/Skyline/SettingsUI/FormulaBox.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/FormulaBox.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI +namespace pwiz.Skyline.SettingsUI { partial class FormulaBox { diff --git a/pwiz_tools/Skyline/SettingsUI/FormulaBox.cs b/pwiz_tools/Skyline/SettingsUI/FormulaBox.cs index 8e7f3961cf7..a17e946ac13 100644 --- a/pwiz_tools/Skyline/SettingsUI/FormulaBox.cs +++ b/pwiz_tools/Skyline/SettingsUI/FormulaBox.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Max Horowitz-Gelb , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/FullScanSettingsControl.Designer.cs b/pwiz_tools/Skyline/SettingsUI/FullScanSettingsControl.Designer.cs index 99b38ce22c3..d92c1ac8890 100644 --- a/pwiz_tools/Skyline/SettingsUI/FullScanSettingsControl.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/FullScanSettingsControl.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI +namespace pwiz.Skyline.SettingsUI { partial class FullScanSettingsControl { diff --git a/pwiz_tools/Skyline/SettingsUI/FullScanSettingsControl.cs b/pwiz_tools/Skyline/SettingsUI/FullScanSettingsControl.cs index ed06d73fb4a..35a88bad53c 100644 --- a/pwiz_tools/Skyline/SettingsUI/FullScanSettingsControl.cs +++ b/pwiz_tools/Skyline/SettingsUI/FullScanSettingsControl.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tahmina Jahan , * UWPR, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/IonMobility/EditIonMobilityLibraryDlg.cs b/pwiz_tools/Skyline/SettingsUI/IonMobility/EditIonMobilityLibraryDlg.cs index 0662b885c27..f1c3ff7e7e2 100644 --- a/pwiz_tools/Skyline/SettingsUI/IonMobility/EditIonMobilityLibraryDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/IonMobility/EditIonMobilityLibraryDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/IonMobility/EditIonMobilityLibraryDlg.designer.cs b/pwiz_tools/Skyline/SettingsUI/IonMobility/EditIonMobilityLibraryDlg.designer.cs index aeb9cf11473..e71f6292968 100644 --- a/pwiz_tools/Skyline/SettingsUI/IonMobility/EditIonMobilityLibraryDlg.designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/IonMobility/EditIonMobilityLibraryDlg.designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI.IonMobility +namespace pwiz.Skyline.SettingsUI.IonMobility { partial class EditIonMobilityLibraryDlg { diff --git a/pwiz_tools/Skyline/SettingsUI/IonMobility/ImportIonMobilityFromSpectralLibraryDlg.cs b/pwiz_tools/Skyline/SettingsUI/IonMobility/ImportIonMobilityFromSpectralLibraryDlg.cs index 11c8c19b3ce..48416f94817 100644 --- a/pwiz_tools/Skyline/SettingsUI/IonMobility/ImportIonMobilityFromSpectralLibraryDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/IonMobility/ImportIonMobilityFromSpectralLibraryDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/IonMobility/ImportIonMobilityFromSpectralLibraryDlg.designer.cs b/pwiz_tools/Skyline/SettingsUI/IonMobility/ImportIonMobilityFromSpectralLibraryDlg.designer.cs index 24b2b0db485..0b22df48a13 100644 --- a/pwiz_tools/Skyline/SettingsUI/IonMobility/ImportIonMobilityFromSpectralLibraryDlg.designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/IonMobility/ImportIonMobilityFromSpectralLibraryDlg.designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI.IonMobility +namespace pwiz.Skyline.SettingsUI.IonMobility { partial class ImportIonMobilityFromSpectralLibraryDlg { diff --git a/pwiz_tools/Skyline/SettingsUI/IonMobility/IonMobilityFilteringUserControl.Designer.cs b/pwiz_tools/Skyline/SettingsUI/IonMobility/IonMobilityFilteringUserControl.Designer.cs index ff6bb448af8..561a8424f3a 100644 --- a/pwiz_tools/Skyline/SettingsUI/IonMobility/IonMobilityFilteringUserControl.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/IonMobility/IonMobilityFilteringUserControl.Designer.cs @@ -1,4 +1,4 @@ -using System.Windows.Forms; +using System.Windows.Forms; namespace pwiz.Skyline.SettingsUI.IonMobility { diff --git a/pwiz_tools/Skyline/SettingsUI/IonMobility/IonMobilityFilteringUserControl.cs b/pwiz_tools/Skyline/SettingsUI/IonMobility/IonMobilityFilteringUserControl.cs index 96a8086cfa0..15873108ed3 100644 --- a/pwiz_tools/Skyline/SettingsUI/IonMobility/IonMobilityFilteringUserControl.cs +++ b/pwiz_tools/Skyline/SettingsUI/IonMobility/IonMobilityFilteringUserControl.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/Irt/AddIrtCalculatorDlg.cs b/pwiz_tools/Skyline/SettingsUI/Irt/AddIrtCalculatorDlg.cs index ce4d893bd20..aa3d5af5384 100644 --- a/pwiz_tools/Skyline/SettingsUI/Irt/AddIrtCalculatorDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/Irt/AddIrtCalculatorDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/Irt/AddIrtPeptidesDlg.Designer.cs b/pwiz_tools/Skyline/SettingsUI/Irt/AddIrtPeptidesDlg.Designer.cs index 7ce9288d088..ce0681e0a30 100644 --- a/pwiz_tools/Skyline/SettingsUI/Irt/AddIrtPeptidesDlg.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/Irt/AddIrtPeptidesDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI.Irt +namespace pwiz.Skyline.SettingsUI.Irt { partial class AddIrtPeptidesDlg { diff --git a/pwiz_tools/Skyline/SettingsUI/Irt/AddIrtPeptidesDlg.cs b/pwiz_tools/Skyline/SettingsUI/Irt/AddIrtPeptidesDlg.cs index 0dee38d7b29..4c70dc33443 100644 --- a/pwiz_tools/Skyline/SettingsUI/Irt/AddIrtPeptidesDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/Irt/AddIrtPeptidesDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/Irt/AddIrtSpectralLibrary.Designer.cs b/pwiz_tools/Skyline/SettingsUI/Irt/AddIrtSpectralLibrary.Designer.cs index 9d3d1260fbc..6f0a8b3a8fc 100644 --- a/pwiz_tools/Skyline/SettingsUI/Irt/AddIrtSpectralLibrary.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/Irt/AddIrtSpectralLibrary.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI.Irt +namespace pwiz.Skyline.SettingsUI.Irt { partial class AddIrtSpectralLibrary { diff --git a/pwiz_tools/Skyline/SettingsUI/Irt/AddIrtSpectralLibrary.cs b/pwiz_tools/Skyline/SettingsUI/Irt/AddIrtSpectralLibrary.cs index f5c48a9afd4..9450afaa2b4 100644 --- a/pwiz_tools/Skyline/SettingsUI/Irt/AddIrtSpectralLibrary.cs +++ b/pwiz_tools/Skyline/SettingsUI/Irt/AddIrtSpectralLibrary.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/Irt/AddIrtStandardsDlg.Designer.cs b/pwiz_tools/Skyline/SettingsUI/Irt/AddIrtStandardsDlg.Designer.cs index 5f82a582aff..2c5411178dd 100644 --- a/pwiz_tools/Skyline/SettingsUI/Irt/AddIrtStandardsDlg.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/Irt/AddIrtStandardsDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI.Irt +namespace pwiz.Skyline.SettingsUI.Irt { partial class AddIrtStandardsDlg { diff --git a/pwiz_tools/Skyline/SettingsUI/Irt/AddIrtStandardsDlg.cs b/pwiz_tools/Skyline/SettingsUI/Irt/AddIrtStandardsDlg.cs index 28c2814e51f..3053ed06f6a 100644 --- a/pwiz_tools/Skyline/SettingsUI/Irt/AddIrtStandardsDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/Irt/AddIrtStandardsDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/Irt/AddIrtStandardsToDocumentDlg.Designer.cs b/pwiz_tools/Skyline/SettingsUI/Irt/AddIrtStandardsToDocumentDlg.Designer.cs index 69fba0f8e06..6a41941132b 100644 --- a/pwiz_tools/Skyline/SettingsUI/Irt/AddIrtStandardsToDocumentDlg.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/Irt/AddIrtStandardsToDocumentDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI.Irt +namespace pwiz.Skyline.SettingsUI.Irt { partial class AddIrtStandardsToDocumentDlg { diff --git a/pwiz_tools/Skyline/SettingsUI/Irt/AddIrtStandardsToDocumentDlg.cs b/pwiz_tools/Skyline/SettingsUI/Irt/AddIrtStandardsToDocumentDlg.cs index 59d933b830f..57d643e3822 100644 --- a/pwiz_tools/Skyline/SettingsUI/Irt/AddIrtStandardsToDocumentDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/Irt/AddIrtStandardsToDocumentDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/Irt/CalibrateIrtDlg.Designer.cs b/pwiz_tools/Skyline/SettingsUI/Irt/CalibrateIrtDlg.Designer.cs index 097f99073d2..a322ae888c8 100644 --- a/pwiz_tools/Skyline/SettingsUI/Irt/CalibrateIrtDlg.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/Irt/CalibrateIrtDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI.Irt +namespace pwiz.Skyline.SettingsUI.Irt { partial class CalibrateIrtDlg { diff --git a/pwiz_tools/Skyline/SettingsUI/Irt/CalibrateIrtDlg.cs b/pwiz_tools/Skyline/SettingsUI/Irt/CalibrateIrtDlg.cs index 5ae51d1ec06..e2f0905c62c 100644 --- a/pwiz_tools/Skyline/SettingsUI/Irt/CalibrateIrtDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/Irt/CalibrateIrtDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: John Chilton , * Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW diff --git a/pwiz_tools/Skyline/SettingsUI/Irt/ChangeIrtPeptidesDlg.Designer.cs b/pwiz_tools/Skyline/SettingsUI/Irt/ChangeIrtPeptidesDlg.Designer.cs index 4f2d853a64f..00b9b659da9 100644 --- a/pwiz_tools/Skyline/SettingsUI/Irt/ChangeIrtPeptidesDlg.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/Irt/ChangeIrtPeptidesDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI.Irt +namespace pwiz.Skyline.SettingsUI.Irt { partial class ChangeIrtPeptidesDlg { diff --git a/pwiz_tools/Skyline/SettingsUI/Irt/ChangeIrtPeptidesDlg.cs b/pwiz_tools/Skyline/SettingsUI/Irt/ChangeIrtPeptidesDlg.cs index b0c6c994781..f4b5236fcb3 100644 --- a/pwiz_tools/Skyline/SettingsUI/Irt/ChangeIrtPeptidesDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/Irt/ChangeIrtPeptidesDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/Irt/EditIrtCalcDlg.Designer.cs b/pwiz_tools/Skyline/SettingsUI/Irt/EditIrtCalcDlg.Designer.cs index 35b3993c34b..fb24d28e2c2 100644 --- a/pwiz_tools/Skyline/SettingsUI/Irt/EditIrtCalcDlg.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/Irt/EditIrtCalcDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI.Irt +namespace pwiz.Skyline.SettingsUI.Irt { partial class EditIrtCalcDlg { diff --git a/pwiz_tools/Skyline/SettingsUI/Irt/EditIrtCalcDlg.cs b/pwiz_tools/Skyline/SettingsUI/Irt/EditIrtCalcDlg.cs index 1751dee8da2..41ce0ed058e 100644 --- a/pwiz_tools/Skyline/SettingsUI/Irt/EditIrtCalcDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/Irt/EditIrtCalcDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: John Chilton , * Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW diff --git a/pwiz_tools/Skyline/SettingsUI/Irt/IrtResources.designer.cs b/pwiz_tools/Skyline/SettingsUI/Irt/IrtResources.designer.cs index e8d85d4f24e..573b4953ed2 100644 --- a/pwiz_tools/Skyline/SettingsUI/Irt/IrtResources.designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/Irt/IrtResources.designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/SettingsUI/Irt/SelectIrtStandardDlg.Designer.cs b/pwiz_tools/Skyline/SettingsUI/Irt/SelectIrtStandardDlg.Designer.cs index 31255159aac..a7936f293ca 100644 --- a/pwiz_tools/Skyline/SettingsUI/Irt/SelectIrtStandardDlg.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/Irt/SelectIrtStandardDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI.Irt +namespace pwiz.Skyline.SettingsUI.Irt { partial class SelectIrtStandardDlg { diff --git a/pwiz_tools/Skyline/SettingsUI/Irt/SelectIrtStandardDlg.cs b/pwiz_tools/Skyline/SettingsUI/Irt/SelectIrtStandardDlg.cs index 5d0a718b98f..749fd3585f4 100644 --- a/pwiz_tools/Skyline/SettingsUI/Irt/SelectIrtStandardDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/Irt/SelectIrtStandardDlg.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections.Generic; using System.Linq; using System.Windows.Forms; diff --git a/pwiz_tools/Skyline/SettingsUI/Irt/UseCurrentCalculatorDlg.Designer.cs b/pwiz_tools/Skyline/SettingsUI/Irt/UseCurrentCalculatorDlg.Designer.cs index 1cb5265367f..6a7e242a45b 100644 --- a/pwiz_tools/Skyline/SettingsUI/Irt/UseCurrentCalculatorDlg.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/Irt/UseCurrentCalculatorDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI.Irt +namespace pwiz.Skyline.SettingsUI.Irt { partial class UseCurrentCalculatorDlg { diff --git a/pwiz_tools/Skyline/SettingsUI/Irt/UseCurrentCalculatorDlg.cs b/pwiz_tools/Skyline/SettingsUI/Irt/UseCurrentCalculatorDlg.cs index 309d51d687f..4ef83c2f60d 100644 --- a/pwiz_tools/Skyline/SettingsUI/Irt/UseCurrentCalculatorDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/Irt/UseCurrentCalculatorDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/MeasuredIonListBoxDriver.cs b/pwiz_tools/Skyline/SettingsUI/MeasuredIonListBoxDriver.cs index a6a471039ed..a225c90deae 100644 --- a/pwiz_tools/Skyline/SettingsUI/MeasuredIonListBoxDriver.cs +++ b/pwiz_tools/Skyline/SettingsUI/MeasuredIonListBoxDriver.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Max Horowitz-Gelb < maxhg .at. u.washington.edu >, * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/MetadataRuleEditor.Designer.cs b/pwiz_tools/Skyline/SettingsUI/MetadataRuleEditor.Designer.cs index c6fcea52b10..6e32eef201e 100644 --- a/pwiz_tools/Skyline/SettingsUI/MetadataRuleEditor.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/MetadataRuleEditor.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI +namespace pwiz.Skyline.SettingsUI { partial class MetadataRuleEditor { diff --git a/pwiz_tools/Skyline/SettingsUI/MetadataRuleEditor.cs b/pwiz_tools/Skyline/SettingsUI/MetadataRuleEditor.cs index 111c6005e03..447aca8c8e1 100644 --- a/pwiz_tools/Skyline/SettingsUI/MetadataRuleEditor.cs +++ b/pwiz_tools/Skyline/SettingsUI/MetadataRuleEditor.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/MetadataRuleSetEditor.Designer.cs b/pwiz_tools/Skyline/SettingsUI/MetadataRuleSetEditor.Designer.cs index 54801568296..a0c13f3d745 100644 --- a/pwiz_tools/Skyline/SettingsUI/MetadataRuleSetEditor.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/MetadataRuleSetEditor.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI +namespace pwiz.Skyline.SettingsUI { partial class MetadataRuleSetEditor { diff --git a/pwiz_tools/Skyline/SettingsUI/MetadataRuleSetEditor.cs b/pwiz_tools/Skyline/SettingsUI/MetadataRuleSetEditor.cs index 50798276fc5..710151af8ae 100644 --- a/pwiz_tools/Skyline/SettingsUI/MetadataRuleSetEditor.cs +++ b/pwiz_tools/Skyline/SettingsUI/MetadataRuleSetEditor.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/Optimization/AddOptimizationLibraryDlg.Designer.cs b/pwiz_tools/Skyline/SettingsUI/Optimization/AddOptimizationLibraryDlg.Designer.cs index cfa0190af6d..0b9254cea01 100644 --- a/pwiz_tools/Skyline/SettingsUI/Optimization/AddOptimizationLibraryDlg.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/Optimization/AddOptimizationLibraryDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI.Optimization +namespace pwiz.Skyline.SettingsUI.Optimization { partial class AddOptimizationLibraryDlg { diff --git a/pwiz_tools/Skyline/SettingsUI/Optimization/AddOptimizationLibraryDlg.cs b/pwiz_tools/Skyline/SettingsUI/Optimization/AddOptimizationLibraryDlg.cs index afaed241c55..334ba9cd3a7 100644 --- a/pwiz_tools/Skyline/SettingsUI/Optimization/AddOptimizationLibraryDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/Optimization/AddOptimizationLibraryDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/Optimization/AddOptimizationsDlg.Designer.cs b/pwiz_tools/Skyline/SettingsUI/Optimization/AddOptimizationsDlg.Designer.cs index 5960d4a2556..87e2625ec89 100644 --- a/pwiz_tools/Skyline/SettingsUI/Optimization/AddOptimizationsDlg.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/Optimization/AddOptimizationsDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI.Optimization +namespace pwiz.Skyline.SettingsUI.Optimization { partial class AddOptimizationsDlg { diff --git a/pwiz_tools/Skyline/SettingsUI/Optimization/AddOptimizationsDlg.cs b/pwiz_tools/Skyline/SettingsUI/Optimization/AddOptimizationsDlg.cs index f2bb3b821a2..e18c9db36c5 100644 --- a/pwiz_tools/Skyline/SettingsUI/Optimization/AddOptimizationsDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/Optimization/AddOptimizationsDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/PeptideGridViewDriver.cs b/pwiz_tools/Skyline/SettingsUI/PeptideGridViewDriver.cs index da0d73980a6..ca1415a5616 100644 --- a/pwiz_tools/Skyline/SettingsUI/PeptideGridViewDriver.cs +++ b/pwiz_tools/Skyline/SettingsUI/PeptideGridViewDriver.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/PeptideSettingsUI.Designer.cs b/pwiz_tools/Skyline/SettingsUI/PeptideSettingsUI.Designer.cs index 377e3f5b6df..1a6de7d366d 100644 --- a/pwiz_tools/Skyline/SettingsUI/PeptideSettingsUI.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/PeptideSettingsUI.Designer.cs @@ -1,4 +1,4 @@ -using pwiz.Skyline.Properties; +using pwiz.Skyline.Properties; namespace pwiz.Skyline.SettingsUI { diff --git a/pwiz_tools/Skyline/SettingsUI/PeptideSettingsUI.cs b/pwiz_tools/Skyline/SettingsUI/PeptideSettingsUI.cs index 9c34d28f56c..992f5e74c7e 100644 --- a/pwiz_tools/Skyline/SettingsUI/PeptideSettingsUI.cs +++ b/pwiz_tools/Skyline/SettingsUI/PeptideSettingsUI.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/RTDetails.Designer.cs b/pwiz_tools/Skyline/SettingsUI/RTDetails.Designer.cs index d03de10904e..3810fe47916 100644 --- a/pwiz_tools/Skyline/SettingsUI/RTDetails.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/RTDetails.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI +namespace pwiz.Skyline.SettingsUI { partial class RTDetails { diff --git a/pwiz_tools/Skyline/SettingsUI/RTDetails.cs b/pwiz_tools/Skyline/SettingsUI/RTDetails.cs index bc5c6640c44..db9a47efc85 100644 --- a/pwiz_tools/Skyline/SettingsUI/RTDetails.cs +++ b/pwiz_tools/Skyline/SettingsUI/RTDetails.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/SaveSettingsDlg.Designer.cs b/pwiz_tools/Skyline/SettingsUI/SaveSettingsDlg.Designer.cs index 20384ea8595..d6cdb7e36c5 100644 --- a/pwiz_tools/Skyline/SettingsUI/SaveSettingsDlg.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/SaveSettingsDlg.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI +namespace pwiz.Skyline.SettingsUI { partial class SaveSettingsDlg { diff --git a/pwiz_tools/Skyline/SettingsUI/SaveSettingsDlg.cs b/pwiz_tools/Skyline/SettingsUI/SaveSettingsDlg.cs index 1f501b09aa4..0dcd52dfd37 100644 --- a/pwiz_tools/Skyline/SettingsUI/SaveSettingsDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/SaveSettingsDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/SettingsListBoxDriver.cs b/pwiz_tools/Skyline/SettingsUI/SettingsListBoxDriver.cs index cc8a387e0a3..3b04c6128d0 100644 --- a/pwiz_tools/Skyline/SettingsUI/SettingsListBoxDriver.cs +++ b/pwiz_tools/Skyline/SettingsUI/SettingsListBoxDriver.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/SettingsUIResources.designer.cs b/pwiz_tools/Skyline/SettingsUI/SettingsUIResources.designer.cs index 5c69cf2f8a3..6a47cbc9573 100644 --- a/pwiz_tools/Skyline/SettingsUI/SettingsUIResources.designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/SettingsUIResources.designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/SettingsUI/SettingsUIUtil.cs b/pwiz_tools/Skyline/SettingsUI/SettingsUIUtil.cs index 7aabd258e33..0bd966fe563 100644 --- a/pwiz_tools/Skyline/SettingsUI/SettingsUIUtil.cs +++ b/pwiz_tools/Skyline/SettingsUI/SettingsUIUtil.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/SimpleGridViewDriver.cs b/pwiz_tools/Skyline/SettingsUI/SimpleGridViewDriver.cs index b15f8feabcb..957f3076f9b 100644 --- a/pwiz_tools/Skyline/SettingsUI/SimpleGridViewDriver.cs +++ b/pwiz_tools/Skyline/SettingsUI/SimpleGridViewDriver.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/StartPageSettingsUI.Designer.cs b/pwiz_tools/Skyline/SettingsUI/StartPageSettingsUI.Designer.cs index 421ab9bd5bf..f312e3ba114 100644 --- a/pwiz_tools/Skyline/SettingsUI/StartPageSettingsUI.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/StartPageSettingsUI.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI +namespace pwiz.Skyline.SettingsUI { partial class StartPageSettingsUI { diff --git a/pwiz_tools/Skyline/SettingsUI/StartPageSettingsUI.cs b/pwiz_tools/Skyline/SettingsUI/StartPageSettingsUI.cs index 572e60b4983..f96642d1289 100644 --- a/pwiz_tools/Skyline/SettingsUI/StartPageSettingsUI.cs +++ b/pwiz_tools/Skyline/SettingsUI/StartPageSettingsUI.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Yuval Boss , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/TransitionSettingsUI.Designer.cs b/pwiz_tools/Skyline/SettingsUI/TransitionSettingsUI.Designer.cs index 19d2f58e246..97594fed5e1 100644 --- a/pwiz_tools/Skyline/SettingsUI/TransitionSettingsUI.Designer.cs +++ b/pwiz_tools/Skyline/SettingsUI/TransitionSettingsUI.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.Skyline.SettingsUI +namespace pwiz.Skyline.SettingsUI { partial class TransitionSettingsUI { diff --git a/pwiz_tools/Skyline/SettingsUI/TransitionSettingsUI.cs b/pwiz_tools/Skyline/SettingsUI/TransitionSettingsUI.cs index e75ae15e04a..4aebcbfe294 100644 --- a/pwiz_tools/Skyline/SettingsUI/TransitionSettingsUI.cs +++ b/pwiz_tools/Skyline/SettingsUI/TransitionSettingsUI.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/ViewLibraryDlg.cs b/pwiz_tools/Skyline/SettingsUI/ViewLibraryDlg.cs index 908305553f2..1b574eebb16 100644 --- a/pwiz_tools/Skyline/SettingsUI/ViewLibraryDlg.cs +++ b/pwiz_tools/Skyline/SettingsUI/ViewLibraryDlg.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tahmina Jahan , * Alana Killeen , * UWPR, Department of Genome Sciences, UW diff --git a/pwiz_tools/Skyline/SettingsUI/ViewLibraryPepInfoList.cs b/pwiz_tools/Skyline/SettingsUI/ViewLibraryPepInfoList.cs index 7e91a80add8..7141d5b197d 100644 --- a/pwiz_tools/Skyline/SettingsUI/ViewLibraryPepInfoList.cs +++ b/pwiz_tools/Skyline/SettingsUI/ViewLibraryPepInfoList.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SettingsUI/ViewLibraryPepMatching.cs b/pwiz_tools/Skyline/SettingsUI/ViewLibraryPepMatching.cs index 78809e10be2..92b762280ac 100644 --- a/pwiz_tools/Skyline/SettingsUI/ViewLibraryPepMatching.cs +++ b/pwiz_tools/Skyline/SettingsUI/ViewLibraryPepMatching.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Alana Killeen , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Skyline.Designer.cs b/pwiz_tools/Skyline/Skyline.Designer.cs index 1135fa52900..ab757488537 100644 --- a/pwiz_tools/Skyline/Skyline.Designer.cs +++ b/pwiz_tools/Skyline/Skyline.Designer.cs @@ -39,6 +39,8 @@ private void InitializeComponent() this.components = new System.ComponentModel.Container(); System.ComponentModel.ComponentResourceManager resources = new System.ComponentModel.ComponentResourceManager(typeof(SkylineWindow)); this.contextMenuTreeNode = new System.Windows.Forms.ContextMenuStrip(this.components); + this.propertiesContextMenuItem = new System.Windows.Forms.ToolStripMenuItem(); + this.toolStripSeparator62 = new System.Windows.Forms.ToolStripSeparator(); this.cutContextMenuItem = new System.Windows.Forms.ToolStripMenuItem(); this.copyContextMenuItem = new System.Windows.Forms.ToolStripMenuItem(); this.pasteContextMenuItem = new System.Windows.Forms.ToolStripMenuItem(); @@ -402,11 +404,19 @@ private void InitializeComponent() this.editNoteContextMenuItem, this.toolStripSeparatorRatios, this.ratiosContextMenuItem, - this.replicatesTreeContextMenuItem}); + this.replicatesTreeContextMenuItem, + this.toolStripSeparator62, + this.propertiesContextMenuItem}); this.contextMenuTreeNode.Name = "contextMenuTreeNode"; resources.ApplyResources(this.contextMenuTreeNode, "contextMenuTreeNode"); this.contextMenuTreeNode.Opening += new System.ComponentModel.CancelEventHandler(this.contextMenuTreeNode_Opening); // + // propertiesContextMenuItem + // + this.propertiesContextMenuItem.Name = "propertiesContextMenuItem"; + resources.ApplyResources(this.propertiesContextMenuItem, "propertiesContextMenuItem"); + this.propertiesContextMenuItem.DropDownOpening += new System.EventHandler(this.propertiesContextMenuItem_DropDownOpening); + // // cutContextMenuItem // this.cutContextMenuItem.Image = global::pwiz.Skyline.Properties.Resources.Cut; @@ -2770,6 +2780,8 @@ private void InitializeComponent() private System.Windows.Forms.ToolStripSeparator mruBeforeToolStripSeparator; private System.Windows.Forms.ToolStripProgressBar statusProgress; private System.Windows.Forms.ContextMenuStrip contextMenuTreeNode; + private System.Windows.Forms.ToolStripSeparator toolStripSeparator62; + private System.Windows.Forms.ToolStripMenuItem propertiesContextMenuItem; private System.Windows.Forms.ToolStripMenuItem cutContextMenuItem; private System.Windows.Forms.ToolStripMenuItem copyContextMenuItem; private System.Windows.Forms.ToolStripMenuItem pasteContextMenuItem; diff --git a/pwiz_tools/Skyline/Skyline.cs b/pwiz_tools/Skyline/Skyline.cs index 9d51763fc7b..8ee29bdc8c0 100644 --- a/pwiz_tools/Skyline/Skyline.cs +++ b/pwiz_tools/Skyline/Skyline.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * @@ -107,6 +107,7 @@ public partial class SkylineWindow { private SequenceTreeForm _sequenceTreeForm; private FilesTreeForm _filesTreeForm; + private PropertyGridForm _propertyGridForm; private ImmediateWindow _immediateWindow; private SrmDocument _document; @@ -205,6 +206,9 @@ public SkylineWindow(string[] args = null) checkForUpdatesMenuItem.Visible = checkForUpdatesSeparator.Visible = ApplicationDeployment.IsNetworkDeployed; + // Track active content to update what PropertyGrid displays + DockPanel.ActiveContentChanged += DockPanel_ActiveContentChanged; + // Begin ToolStore check for updates to currently installed tools, if any if (ToolStoreUtil.UpdatableTools(Settings.Default.ToolList).Any()) ActionUtil.RunAsync(() => ToolStoreUtil.CheckForUpdates(Settings.Default.ToolList.ToArray()), @"Check for tool updates"); @@ -1093,6 +1097,9 @@ protected override bool ProcessCmdKey(ref Message msg, Keys keyData) FindNext(true); SequenceTree.UseKeysOverride = false; return true; + case Keys.F4: + ShowPropertyGridForm(show: true); + return true; } return base.ProcessCmdKey(ref msg, keyData); } @@ -3229,8 +3236,76 @@ public void DestroyFilesTreeForm() #endregion + #region Properties + + public PropertyGridForm PropertyGridForm => _propertyGridForm; + public bool PropertyGridFormIsVisible => _propertyGridForm is { Visible: true }; + public bool PropertyGridFormIsActivated => _propertyGridForm is { IsActivated: true }; + private IPropertyProvider _lastFocusedPropertyProvider; + + public void ShowPropertyGridForm(bool show, string persistentState = null) + { + if (show) + { + _propertyGridForm ??= CreatePropertyGridForm(); + + if (_propertyGridForm.DockPanel != null) + _propertyGridForm.Activate(); + else + _propertyGridForm.Show(dockPanel, DockState.DockRight); + + UpdatePropertyGrid(); + } + else + { + _propertyGridForm.Hide(); + } + } + + private PropertyGridForm CreatePropertyGridForm() + { + _propertyGridForm = new PropertyGridForm(this); + UpdatePropertyGrid(); + + return _propertyGridForm; + } + + public void FocusPropertyProvider(IPropertyProvider propertyProvider) + { + _lastFocusedPropertyProvider = propertyProvider; + UpdatePropertyGrid(); + } + + /// + /// Called when the selection on a property provider has changed. If the property + /// provider is the currently focused property provider then update the property sheet. + /// + public void PropertyProviderSelectionChanged(IPropertyProvider propertyProvider) + { + if (ReferenceEquals(_lastFocusedPropertyProvider, propertyProvider)) + { + UpdatePropertyGrid(); + } + } + + public void DockPanel_ActiveContentChanged(object sender, EventArgs e) + { + if (DockPanel.ActiveContent is IPropertyProvider propertyProvider) + FocusPropertyProvider(propertyProvider); + } + + public void UpdatePropertyGrid() + { + if (_propertyGridForm is { Visible: true }) + _propertyGridForm.SetPropertyObject(_lastFocusedPropertyProvider?.GetPropertyObject()); + } + + #endregion + #region SequenceTree events + public SequenceTreeForm SequenceTreeForm => _sequenceTreeForm; + public bool SequenceTreeFormIsVisible { get { return _sequenceTreeForm != null && _sequenceTreeForm.Visible; } @@ -4859,6 +4934,11 @@ private void viewToolStripMenuItem_DropDownOpening(object sender, EventArgs e) ViewMenu.ViewMenuDropDownOpening(); } + private void propertiesContextMenuItem_DropDownOpening(object sender, EventArgs e) + { + ShowPropertyGridForm(true); + } + public void SetModifiedSequenceDisplayOption(DisplayModificationOption displayModificationOption) { DisplayModificationOption.Current = displayModificationOption; diff --git a/pwiz_tools/Skyline/Skyline.csproj b/pwiz_tools/Skyline/Skyline.csproj index 502ca6ddc9b..a778447982e 100644 --- a/pwiz_tools/Skyline/Skyline.csproj +++ b/pwiz_tools/Skyline/Skyline.csproj @@ -1,4 +1,4 @@ - + Debug @@ -458,6 +458,12 @@ Component + + Form + + + PropertyGridForm.cs + @@ -546,6 +552,7 @@ Form + @@ -641,6 +648,22 @@ + + + True + True + PropertyGridFileNodeResources.resx + + + True + True + PropertyGridDocNodeResources.resx + + + True + True + PropertyGridResources.resx + @@ -2997,6 +3020,10 @@ ListDesigner.cs + + PropertyGridForm.cs + Designer + SpectrumGridForm.cs @@ -3800,6 +3827,19 @@ FullScanPropertiesRes.resx Designer + + ResXFileCodeGenerator + Designer + PropertyGridFileNodeResources.Designer.cs + + + ResXFileCodeGenerator + PropertyGridDocNodeResources.Designer.cs + + + ResXFileCodeGenerator + PropertyGridResources.Designer.cs + RetentionTimesResources.resx diff --git a/pwiz_tools/Skyline/Skyline.csproj.DotSettings b/pwiz_tools/Skyline/Skyline.csproj.DotSettings index 71a1e0fc85a..05276cc352c 100644 --- a/pwiz_tools/Skyline/Skyline.csproj.DotSettings +++ b/pwiz_tools/Skyline/Skyline.csproj.DotSettings @@ -1,3 +1,3 @@ - + Yes Pessimistic \ No newline at end of file diff --git a/pwiz_tools/Skyline/Skyline.resx b/pwiz_tools/Skyline/Skyline.resx index c7dc4b48f7d..6a8f24f3e5a 100644 --- a/pwiz_tools/Skyline/Skyline.resx +++ b/pwiz_tools/Skyline/Skyline.resx @@ -145,6 +145,15 @@ Copy + + Fuchsia + + + 228, 22 + + + Properties + Fuchsia @@ -2247,6 +2256,12 @@ System.Windows.Forms.ToolStripMenuItem, System.Windows.Forms, Version=4.0.0.0, Culture=neutral, PublicKeyToken=b77a5c561934e089 + + propertiesContextMenuItem + + + System.Windows.Forms.ToolStripMenuItem, System.Windows.Forms, Version=4.0.0.0, Culture=neutral, PublicKeyToken=b77a5c561934e089 + pasteContextMenuItem diff --git a/pwiz_tools/Skyline/Skyline.sln.DotSettings b/pwiz_tools/Skyline/Skyline.sln.DotSettings index 6e8193aecc6..f6ba8e3c1db 100644 --- a/pwiz_tools/Skyline/Skyline.sln.DotSettings +++ b/pwiz_tools/Skyline/Skyline.sln.DotSettings @@ -1,4 +1,4 @@ - + ExplicitlyExcluded True diff --git a/pwiz_tools/Skyline/SkylineCmd.exe.config b/pwiz_tools/Skyline/SkylineCmd.exe.config index 9b521042491..f7034c6830d 100644 --- a/pwiz_tools/Skyline/SkylineCmd.exe.config +++ b/pwiz_tools/Skyline/SkylineCmd.exe.config @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/SkylineCmd/Program.cs b/pwiz_tools/Skyline/SkylineCmd/Program.cs index 9491219b8c7..79632e8c348 100644 --- a/pwiz_tools/Skyline/SkylineCmd/Program.cs +++ b/pwiz_tools/Skyline/SkylineCmd/Program.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SkylineCmd/Properties/app.manifest b/pwiz_tools/Skyline/SkylineCmd/Properties/app.manifest index f588ce94ff4..5e2d08f2b17 100644 --- a/pwiz_tools/Skyline/SkylineCmd/Properties/app.manifest +++ b/pwiz_tools/Skyline/SkylineCmd/Properties/app.manifest @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/SkylineCmd/SkylineCmd.csproj b/pwiz_tools/Skyline/SkylineCmd/SkylineCmd.csproj index 842322346bc..1034fff3ca9 100644 --- a/pwiz_tools/Skyline/SkylineCmd/SkylineCmd.csproj +++ b/pwiz_tools/Skyline/SkylineCmd/SkylineCmd.csproj @@ -1,4 +1,4 @@ - + Debug diff --git a/pwiz_tools/Skyline/SkylineCmd/SkylineCmdResources.Designer.cs b/pwiz_tools/Skyline/SkylineCmd/SkylineCmdResources.Designer.cs index 6487faeafd9..1febbc3a41e 100644 --- a/pwiz_tools/Skyline/SkylineCmd/SkylineCmdResources.Designer.cs +++ b/pwiz_tools/Skyline/SkylineCmd/SkylineCmdResources.Designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/SkylineFiles.cs b/pwiz_tools/Skyline/SkylineFiles.cs index 52fdba5fa00..b87fc845947 100644 --- a/pwiz_tools/Skyline/SkylineFiles.cs +++ b/pwiz_tools/Skyline/SkylineFiles.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * @@ -1331,7 +1331,7 @@ private void SaveLayout(string fileName) { if (saverUser.CanSave()) { - dockPanel.SaveAsXml(saverUser.SafeName, Encoding.UTF8); + dockPanel.SaveAsXml(saverUser.SafeName, new UTF8Encoding(false)); // UTF-8 without BOM saverUser.Commit(); } } diff --git a/pwiz_tools/Skyline/SkylineGraphs.cs b/pwiz_tools/Skyline/SkylineGraphs.cs index 251d9dc9dac..d569015e0c9 100644 --- a/pwiz_tools/Skyline/SkylineGraphs.cs +++ b/pwiz_tools/Skyline/SkylineGraphs.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * @@ -601,7 +601,7 @@ private static MemoryStream MoveLayoutOffScreen(Stream layoutStream) } var memoryStream = new MemoryStream(); - var xmlTextWriter = new XmlTextWriter(memoryStream, Encoding.UTF8) + var xmlTextWriter = new XmlTextWriter(memoryStream, new UTF8Encoding(false)) // UTF-8 without BOM { Formatting = Formatting.Indented }; @@ -754,6 +754,10 @@ private IDockableForm DeserializeForm(string persistentString) { return _immediateWindow ?? CreateImmediateWindow(); } + if (Equals(persistentString, typeof(PropertyGridForm).ToString())) + { + return _propertyGridForm ?? CreatePropertyGridForm(); + } if (persistentString.StartsWith(typeof(GraphChromatogram).ToString())) { if (_listGraphChrom.Count >= MAX_GRAPH_CHROM) diff --git a/pwiz_tools/Skyline/SkylineNightly/LogFileMonitor.cs b/pwiz_tools/Skyline/SkylineNightly/LogFileMonitor.cs index 785c7ba8456..fe649d072e0 100644 --- a/pwiz_tools/Skyline/SkylineNightly/LogFileMonitor.cs +++ b/pwiz_tools/Skyline/SkylineNightly/LogFileMonitor.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SkylineNightly/Nightly.cs b/pwiz_tools/Skyline/SkylineNightly/Nightly.cs index 0ca4bfd67a9..38b35ef8366 100644 --- a/pwiz_tools/Skyline/SkylineNightly/Nightly.cs +++ b/pwiz_tools/Skyline/SkylineNightly/Nightly.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SkylineNightly/Program.cs b/pwiz_tools/Skyline/SkylineNightly/Program.cs index de4fce2aea0..32d4b3f5427 100644 --- a/pwiz_tools/Skyline/SkylineNightly/Program.cs +++ b/pwiz_tools/Skyline/SkylineNightly/Program.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SkylineNightly/Properties/Resources.Designer.cs b/pwiz_tools/Skyline/SkylineNightly/Properties/Resources.Designer.cs index c37b7401e01..50c3c0255c2 100644 --- a/pwiz_tools/Skyline/SkylineNightly/Properties/Resources.Designer.cs +++ b/pwiz_tools/Skyline/SkylineNightly/Properties/Resources.Designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/SkylineNightly/Properties/Settings.Designer.cs b/pwiz_tools/Skyline/SkylineNightly/Properties/Settings.Designer.cs index 413be5198e2..85890686a2d 100644 --- a/pwiz_tools/Skyline/SkylineNightly/Properties/Settings.Designer.cs +++ b/pwiz_tools/Skyline/SkylineNightly/Properties/Settings.Designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/SkylineNightly/Properties/Settings.settings b/pwiz_tools/Skyline/SkylineNightly/Properties/Settings.settings index 092359ac615..1c8ed297e07 100644 --- a/pwiz_tools/Skyline/SkylineNightly/Properties/Settings.settings +++ b/pwiz_tools/Skyline/SkylineNightly/Properties/Settings.settings @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/SkylineNightly/SkylineNightly.Designer.cs b/pwiz_tools/Skyline/SkylineNightly/SkylineNightly.Designer.cs index b6d317ae19d..592e325db4b 100644 --- a/pwiz_tools/Skyline/SkylineNightly/SkylineNightly.Designer.cs +++ b/pwiz_tools/Skyline/SkylineNightly/SkylineNightly.Designer.cs @@ -1,4 +1,4 @@ -namespace SkylineNightly +namespace SkylineNightly { partial class SkylineNightly { diff --git a/pwiz_tools/Skyline/SkylineNightly/SkylineNightly.cs b/pwiz_tools/Skyline/SkylineNightly/SkylineNightly.cs index c8368cd43fe..830736c403e 100644 --- a/pwiz_tools/Skyline/SkylineNightly/SkylineNightly.cs +++ b/pwiz_tools/Skyline/SkylineNightly/SkylineNightly.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SkylineNightly/SkylineNightly.csproj b/pwiz_tools/Skyline/SkylineNightly/SkylineNightly.csproj index 3b80cdc333f..72b2bcdcd3d 100644 --- a/pwiz_tools/Skyline/SkylineNightly/SkylineNightly.csproj +++ b/pwiz_tools/Skyline/SkylineNightly/SkylineNightly.csproj @@ -1,4 +1,4 @@ - + Debug diff --git a/pwiz_tools/Skyline/SkylineNightly/Xml.cs b/pwiz_tools/Skyline/SkylineNightly/Xml.cs index 1b9e5a5a02b..12b612a63cc 100644 --- a/pwiz_tools/Skyline/SkylineNightly/Xml.cs +++ b/pwiz_tools/Skyline/SkylineNightly/Xml.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SkylineNightly/app.manifest b/pwiz_tools/Skyline/SkylineNightly/app.manifest index f31a9ac9bfb..f2732ddcb49 100644 --- a/pwiz_tools/Skyline/SkylineNightly/app.manifest +++ b/pwiz_tools/Skyline/SkylineNightly/app.manifest @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/SkylineNightlyShim/Program.cs b/pwiz_tools/Skyline/SkylineNightlyShim/Program.cs index a5700bd38eb..db2b98bac15 100644 --- a/pwiz_tools/Skyline/SkylineNightlyShim/Program.cs +++ b/pwiz_tools/Skyline/SkylineNightlyShim/Program.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SkylineNightlyShim/SkylineNightlyShim.csproj b/pwiz_tools/Skyline/SkylineNightlyShim/SkylineNightlyShim.csproj index dbd12653160..cd81c335483 100644 --- a/pwiz_tools/Skyline/SkylineNightlyShim/SkylineNightlyShim.csproj +++ b/pwiz_tools/Skyline/SkylineNightlyShim/SkylineNightlyShim.csproj @@ -1,4 +1,4 @@ - + Debug diff --git a/pwiz_tools/Skyline/SkylineResources.designer.cs b/pwiz_tools/Skyline/SkylineResources.designer.cs index a7a100a4ac2..ce8b5379199 100644 --- a/pwiz_tools/Skyline/SkylineResources.designer.cs +++ b/pwiz_tools/Skyline/SkylineResources.designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/SkylineTester/AboutWindow.Designer.cs b/pwiz_tools/Skyline/SkylineTester/AboutWindow.Designer.cs index 78778848158..9d294deda04 100644 --- a/pwiz_tools/Skyline/SkylineTester/AboutWindow.Designer.cs +++ b/pwiz_tools/Skyline/SkylineTester/AboutWindow.Designer.cs @@ -1,4 +1,4 @@ -namespace SkylineTester +namespace SkylineTester { partial class AboutWindow { diff --git a/pwiz_tools/Skyline/SkylineTester/AboutWindow.cs b/pwiz_tools/Skyline/SkylineTester/AboutWindow.cs index 8d37c775d3e..baef0a077e7 100644 --- a/pwiz_tools/Skyline/SkylineTester/AboutWindow.cs +++ b/pwiz_tools/Skyline/SkylineTester/AboutWindow.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SkylineTester/CommandShell.cs b/pwiz_tools/Skyline/SkylineTester/CommandShell.cs index eb0bb773269..94d7a1f0fc3 100644 --- a/pwiz_tools/Skyline/SkylineTester/CommandShell.cs +++ b/pwiz_tools/Skyline/SkylineTester/CommandShell.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SkylineTester/CreateZipInstallerWindow.Designer.cs b/pwiz_tools/Skyline/SkylineTester/CreateZipInstallerWindow.Designer.cs index 17861b895e2..1cd007807ec 100644 --- a/pwiz_tools/Skyline/SkylineTester/CreateZipInstallerWindow.Designer.cs +++ b/pwiz_tools/Skyline/SkylineTester/CreateZipInstallerWindow.Designer.cs @@ -1,4 +1,4 @@ -namespace SkylineTester +namespace SkylineTester { partial class CreateZipInstallerWindow { diff --git a/pwiz_tools/Skyline/SkylineTester/CreateZipInstallerWindow.cs b/pwiz_tools/Skyline/SkylineTester/CreateZipInstallerWindow.cs index b6b49a1d989..643e1a3774a 100644 --- a/pwiz_tools/Skyline/SkylineTester/CreateZipInstallerWindow.cs +++ b/pwiz_tools/Skyline/SkylineTester/CreateZipInstallerWindow.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SkylineTester/DeleteWindow.Designer.cs b/pwiz_tools/Skyline/SkylineTester/DeleteWindow.Designer.cs index 057c421decb..f896d19ed9f 100644 --- a/pwiz_tools/Skyline/SkylineTester/DeleteWindow.Designer.cs +++ b/pwiz_tools/Skyline/SkylineTester/DeleteWindow.Designer.cs @@ -1,4 +1,4 @@ -namespace SkylineTester +namespace SkylineTester { partial class DeleteWindow { diff --git a/pwiz_tools/Skyline/SkylineTester/DeleteWindow.cs b/pwiz_tools/Skyline/SkylineTester/DeleteWindow.cs index 4bdf6e77ffe..234726f9d93 100644 --- a/pwiz_tools/Skyline/SkylineTester/DeleteWindow.cs +++ b/pwiz_tools/Skyline/SkylineTester/DeleteWindow.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SkylineTester/Extensions.cs b/pwiz_tools/Skyline/SkylineTester/Extensions.cs index cce7020ff6b..3cb14007225 100644 --- a/pwiz_tools/Skyline/SkylineTester/Extensions.cs +++ b/pwiz_tools/Skyline/SkylineTester/Extensions.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SkylineTester/FindWindow.Designer.cs b/pwiz_tools/Skyline/SkylineTester/FindWindow.Designer.cs index d83e5b4db47..3fde3151af1 100644 --- a/pwiz_tools/Skyline/SkylineTester/FindWindow.Designer.cs +++ b/pwiz_tools/Skyline/SkylineTester/FindWindow.Designer.cs @@ -1,4 +1,4 @@ -namespace SkylineTester +namespace SkylineTester { partial class FindWindow { diff --git a/pwiz_tools/Skyline/SkylineTester/FindWindow.cs b/pwiz_tools/Skyline/SkylineTester/FindWindow.cs index 6e00e12220d..ef0a9e5b086 100644 --- a/pwiz_tools/Skyline/SkylineTester/FindWindow.cs +++ b/pwiz_tools/Skyline/SkylineTester/FindWindow.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SkylineTester/FormLookup.cs b/pwiz_tools/Skyline/SkylineTester/FormLookup.cs index 45922a952c8..547dfcecc0b 100644 --- a/pwiz_tools/Skyline/SkylineTester/FormLookup.cs +++ b/pwiz_tools/Skyline/SkylineTester/FormLookup.cs @@ -1,4 +1,4 @@ -using System.Collections.Generic; +using System.Collections.Generic; using System.IO; using System.Linq; using System.Text; diff --git a/pwiz_tools/Skyline/SkylineTester/Main.cs b/pwiz_tools/Skyline/SkylineTester/Main.cs index 8632ee38d37..c38c622b53d 100644 --- a/pwiz_tools/Skyline/SkylineTester/Main.cs +++ b/pwiz_tools/Skyline/SkylineTester/Main.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SkylineTester/MemoryChartWindow.Designer.cs b/pwiz_tools/Skyline/SkylineTester/MemoryChartWindow.Designer.cs index 45f59700691..5798f939e6e 100644 --- a/pwiz_tools/Skyline/SkylineTester/MemoryChartWindow.Designer.cs +++ b/pwiz_tools/Skyline/SkylineTester/MemoryChartWindow.Designer.cs @@ -1,4 +1,4 @@ -using ZedGraph; +using ZedGraph; namespace SkylineTester { diff --git a/pwiz_tools/Skyline/SkylineTester/MemoryChartWindow.cs b/pwiz_tools/Skyline/SkylineTester/MemoryChartWindow.cs index f7504d430f4..b4cdab7f0b6 100644 --- a/pwiz_tools/Skyline/SkylineTester/MemoryChartWindow.cs +++ b/pwiz_tools/Skyline/SkylineTester/MemoryChartWindow.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SkylineTester/MyTreeView.Designer.cs b/pwiz_tools/Skyline/SkylineTester/MyTreeView.Designer.cs index ca94d788df4..ceff6f74114 100644 --- a/pwiz_tools/Skyline/SkylineTester/MyTreeView.Designer.cs +++ b/pwiz_tools/Skyline/SkylineTester/MyTreeView.Designer.cs @@ -1,4 +1,4 @@ -namespace SkylineTester +namespace SkylineTester { partial class MyTreeView { diff --git a/pwiz_tools/Skyline/SkylineTester/MyTreeView.cs b/pwiz_tools/Skyline/SkylineTester/MyTreeView.cs index d07fa793c99..69b9642801c 100644 --- a/pwiz_tools/Skyline/SkylineTester/MyTreeView.cs +++ b/pwiz_tools/Skyline/SkylineTester/MyTreeView.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SkylineTester/ProcessUtilities.cs b/pwiz_tools/Skyline/SkylineTester/ProcessUtilities.cs index c0ebd046bc1..201de411042 100644 --- a/pwiz_tools/Skyline/SkylineTester/ProcessUtilities.cs +++ b/pwiz_tools/Skyline/SkylineTester/ProcessUtilities.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SkylineTester/Program.cs b/pwiz_tools/Skyline/SkylineTester/Program.cs index 5b1c71505eb..26c27a1ea30 100644 --- a/pwiz_tools/Skyline/SkylineTester/Program.cs +++ b/pwiz_tools/Skyline/SkylineTester/Program.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SkylineTester/Properties/Resources.Designer.cs b/pwiz_tools/Skyline/SkylineTester/Properties/Resources.Designer.cs index c0f0674bb25..3e15e5aa7a4 100644 --- a/pwiz_tools/Skyline/SkylineTester/Properties/Resources.Designer.cs +++ b/pwiz_tools/Skyline/SkylineTester/Properties/Resources.Designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/SkylineTester/Properties/Settings.Designer.cs b/pwiz_tools/Skyline/SkylineTester/Properties/Settings.Designer.cs index 7e9f991eb49..5bf710ae77c 100644 --- a/pwiz_tools/Skyline/SkylineTester/Properties/Settings.Designer.cs +++ b/pwiz_tools/Skyline/SkylineTester/Properties/Settings.Designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/SkylineTester/Properties/Settings.settings b/pwiz_tools/Skyline/SkylineTester/Properties/Settings.settings index 44d4c66eeb0..6bf5990a033 100644 --- a/pwiz_tools/Skyline/SkylineTester/Properties/Settings.settings +++ b/pwiz_tools/Skyline/SkylineTester/Properties/Settings.settings @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/SkylineTester/Properties/app.manifest b/pwiz_tools/Skyline/SkylineTester/Properties/app.manifest index 86e844db2b4..f87b3fecf1a 100644 --- a/pwiz_tools/Skyline/SkylineTester/Properties/app.manifest +++ b/pwiz_tools/Skyline/SkylineTester/Properties/app.manifest @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/SkylineTester/SafeDataGridView.cs b/pwiz_tools/Skyline/SkylineTester/SafeDataGridView.cs index a3f98f0ce4c..cc11353dfd3 100644 --- a/pwiz_tools/Skyline/SkylineTester/SafeDataGridView.cs +++ b/pwiz_tools/Skyline/SkylineTester/SafeDataGridView.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SkylineTester/SkylineTester.csproj b/pwiz_tools/Skyline/SkylineTester/SkylineTester.csproj index c0afd6b178f..0a9d8760502 100644 --- a/pwiz_tools/Skyline/SkylineTester/SkylineTester.csproj +++ b/pwiz_tools/Skyline/SkylineTester/SkylineTester.csproj @@ -1,4 +1,4 @@ - + Debug diff --git a/pwiz_tools/Skyline/SkylineTester/SkylineTester.csproj.DotSettings b/pwiz_tools/Skyline/SkylineTester/SkylineTester.csproj.DotSettings index 6e7fff86abe..928f1267f4e 100644 --- a/pwiz_tools/Skyline/SkylineTester/SkylineTester.csproj.DotSettings +++ b/pwiz_tools/Skyline/SkylineTester/SkylineTester.csproj.DotSettings @@ -1,2 +1,2 @@ - + No \ No newline at end of file diff --git a/pwiz_tools/Skyline/SkylineTester/SkylineTesterWindow.Designer.cs b/pwiz_tools/Skyline/SkylineTester/SkylineTesterWindow.Designer.cs index 1630f58ce62..ddfbc10affe 100644 --- a/pwiz_tools/Skyline/SkylineTester/SkylineTesterWindow.Designer.cs +++ b/pwiz_tools/Skyline/SkylineTester/SkylineTesterWindow.Designer.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections.Generic; using System.ComponentModel; using System.Drawing; diff --git a/pwiz_tools/Skyline/SkylineTester/SkylineTesterWindow.cs b/pwiz_tools/Skyline/SkylineTester/SkylineTesterWindow.cs index 7f50e23e292..c635b38e2d0 100644 --- a/pwiz_tools/Skyline/SkylineTester/SkylineTesterWindow.cs +++ b/pwiz_tools/Skyline/SkylineTester/SkylineTesterWindow.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SkylineTester/Summary.cs b/pwiz_tools/Skyline/SkylineTester/Summary.cs index b91b933d565..22b37148483 100644 --- a/pwiz_tools/Skyline/SkylineTester/Summary.cs +++ b/pwiz_tools/Skyline/SkylineTester/Summary.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SkylineTester/TabBase.cs b/pwiz_tools/Skyline/SkylineTester/TabBase.cs index 52e7c3078fa..80e39272e9e 100644 --- a/pwiz_tools/Skyline/SkylineTester/TabBase.cs +++ b/pwiz_tools/Skyline/SkylineTester/TabBase.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SkylineTester/TabBuild.cs b/pwiz_tools/Skyline/SkylineTester/TabBuild.cs index 82a2aa7a23e..ba037d344c9 100644 --- a/pwiz_tools/Skyline/SkylineTester/TabBuild.cs +++ b/pwiz_tools/Skyline/SkylineTester/TabBuild.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SkylineTester/TabForms.cs b/pwiz_tools/Skyline/SkylineTester/TabForms.cs index 0e006715ae3..9a3c85d7416 100644 --- a/pwiz_tools/Skyline/SkylineTester/TabForms.cs +++ b/pwiz_tools/Skyline/SkylineTester/TabForms.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SkylineTester/TabNightly.cs b/pwiz_tools/Skyline/SkylineTester/TabNightly.cs index 6e3efebc7e8..c514c9630a3 100644 --- a/pwiz_tools/Skyline/SkylineTester/TabNightly.cs +++ b/pwiz_tools/Skyline/SkylineTester/TabNightly.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SkylineTester/TabOutput.cs b/pwiz_tools/Skyline/SkylineTester/TabOutput.cs index ababcda86f8..e853d2ecb07 100644 --- a/pwiz_tools/Skyline/SkylineTester/TabOutput.cs +++ b/pwiz_tools/Skyline/SkylineTester/TabOutput.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SkylineTester/TabQuality.cs b/pwiz_tools/Skyline/SkylineTester/TabQuality.cs index d2e7c6a9ec6..525b22cc87c 100644 --- a/pwiz_tools/Skyline/SkylineTester/TabQuality.cs +++ b/pwiz_tools/Skyline/SkylineTester/TabQuality.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SkylineTester/TabRunStats.cs b/pwiz_tools/Skyline/SkylineTester/TabRunStats.cs index b8ba8b5839b..fa6eb3a00ee 100644 --- a/pwiz_tools/Skyline/SkylineTester/TabRunStats.cs +++ b/pwiz_tools/Skyline/SkylineTester/TabRunStats.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SkylineTester/TabTests.cs b/pwiz_tools/Skyline/SkylineTester/TabTests.cs index c836af0601e..99dbd76386a 100644 --- a/pwiz_tools/Skyline/SkylineTester/TabTests.cs +++ b/pwiz_tools/Skyline/SkylineTester/TabTests.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SkylineTester/TabTutorials.cs b/pwiz_tools/Skyline/SkylineTester/TabTutorials.cs index d83c009c7e1..c54c1a54448 100644 --- a/pwiz_tools/Skyline/SkylineTester/TabTutorials.cs +++ b/pwiz_tools/Skyline/SkylineTester/TabTutorials.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SkylineTester/Try.cs b/pwiz_tools/Skyline/SkylineTester/Try.cs index 1892eb78b31..d1d27ed6c18 100644 --- a/pwiz_tools/Skyline/SkylineTester/Try.cs +++ b/pwiz_tools/Skyline/SkylineTester/Try.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SkylineTester/WakeupTimer.cs b/pwiz_tools/Skyline/SkylineTester/WakeupTimer.cs index e4fa8ed2858..3490c858f61 100644 --- a/pwiz_tools/Skyline/SkylineTester/WakeupTimer.cs +++ b/pwiz_tools/Skyline/SkylineTester/WakeupTimer.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SkylineTester/WindowThumbnail.Designer.cs b/pwiz_tools/Skyline/SkylineTester/WindowThumbnail.Designer.cs index e589a8ebd04..9bd0f9c4bda 100644 --- a/pwiz_tools/Skyline/SkylineTester/WindowThumbnail.Designer.cs +++ b/pwiz_tools/Skyline/SkylineTester/WindowThumbnail.Designer.cs @@ -1,4 +1,4 @@ -namespace SkylineTester +namespace SkylineTester { partial class WindowThumbnail { diff --git a/pwiz_tools/Skyline/SkylineTester/WindowThumbnail.cs b/pwiz_tools/Skyline/SkylineTester/WindowThumbnail.cs index 925da4cc9ec..c5b47dc8557 100644 --- a/pwiz_tools/Skyline/SkylineTester/WindowThumbnail.cs +++ b/pwiz_tools/Skyline/SkylineTester/WindowThumbnail.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SkylineTool/DocumentLocation.cs b/pwiz_tools/Skyline/SkylineTool/DocumentLocation.cs index 21d512259f7..d8784e7e6eb 100644 --- a/pwiz_tools/Skyline/SkylineTool/DocumentLocation.cs +++ b/pwiz_tools/Skyline/SkylineTool/DocumentLocation.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SkylineTool/IToolService.cs b/pwiz_tools/Skyline/SkylineTool/IToolService.cs index 6f64c89b20a..2f298636b22 100644 --- a/pwiz_tools/Skyline/SkylineTool/IToolService.cs +++ b/pwiz_tools/Skyline/SkylineTool/IToolService.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SkylineTool/Properties/AssemblyInfo.cs b/pwiz_tools/Skyline/SkylineTool/Properties/AssemblyInfo.cs index 3a19b5e0804..162cd544cd6 100644 --- a/pwiz_tools/Skyline/SkylineTool/Properties/AssemblyInfo.cs +++ b/pwiz_tools/Skyline/SkylineTool/Properties/AssemblyInfo.cs @@ -1,4 +1,4 @@ -using System.Reflection; +using System.Reflection; using System.Runtime.InteropServices; // General Information about an assembly is controlled through the following diff --git a/pwiz_tools/Skyline/SkylineTool/RemoteBase.cs b/pwiz_tools/Skyline/SkylineTool/RemoteBase.cs index 8655f70bf47..6f41ec55ed9 100644 --- a/pwiz_tools/Skyline/SkylineTool/RemoteBase.cs +++ b/pwiz_tools/Skyline/SkylineTool/RemoteBase.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SkylineTool/RemoteClient.cs b/pwiz_tools/Skyline/SkylineTool/RemoteClient.cs index 0f56a8aed03..4516ad0285b 100644 --- a/pwiz_tools/Skyline/SkylineTool/RemoteClient.cs +++ b/pwiz_tools/Skyline/SkylineTool/RemoteClient.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SkylineTool/RemoteService.cs b/pwiz_tools/Skyline/SkylineTool/RemoteService.cs index c8d5d455e08..f92fe8e33c5 100644 --- a/pwiz_tools/Skyline/SkylineTool/RemoteService.cs +++ b/pwiz_tools/Skyline/SkylineTool/RemoteService.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/SkylineTool/SkylineTool.csproj b/pwiz_tools/Skyline/SkylineTool/SkylineTool.csproj index 2bce174e626..e5d069b52b7 100644 --- a/pwiz_tools/Skyline/SkylineTool/SkylineTool.csproj +++ b/pwiz_tools/Skyline/SkylineTool/SkylineTool.csproj @@ -1,4 +1,4 @@ - + Debug diff --git a/pwiz_tools/Skyline/SkylineTool/SkylineToolClient.cs b/pwiz_tools/Skyline/SkylineTool/SkylineToolClient.cs index 9c5faa6dcb6..4ce855a8060 100644 --- a/pwiz_tools/Skyline/SkylineTool/SkylineToolClient.cs +++ b/pwiz_tools/Skyline/SkylineTool/SkylineToolClient.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/AbstractLibraryBuilderModificationSupportTest.cs b/pwiz_tools/Skyline/Test/AbstractLibraryBuilderModificationSupportTest.cs index a6d119e172d..41092762480 100644 --- a/pwiz_tools/Skyline/Test/AbstractLibraryBuilderModificationSupportTest.cs +++ b/pwiz_tools/Skyline/Test/AbstractLibraryBuilderModificationSupportTest.cs @@ -1,4 +1,4 @@ -/* +/* * Author: David Shteynberg , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/AddTransitionsTest.cs b/pwiz_tools/Skyline/Test/AddTransitionsTest.cs index 34387fb7a9d..69b9dd056be 100644 --- a/pwiz_tools/Skyline/Test/AddTransitionsTest.cs +++ b/pwiz_tools/Skyline/Test/AddTransitionsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/AlphapeptdeepLibraryBuilderTest.cs b/pwiz_tools/Skyline/Test/AlphapeptdeepLibraryBuilderTest.cs index 9e90afad707..a9f5ccb89c5 100644 --- a/pwiz_tools/Skyline/Test/AlphapeptdeepLibraryBuilderTest.cs +++ b/pwiz_tools/Skyline/Test/AlphapeptdeepLibraryBuilderTest.cs @@ -1,4 +1,4 @@ -/* +/* * Author: David Shteynberg , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/AnalyticsTest.cs b/pwiz_tools/Skyline/Test/AnalyticsTest.cs index 0f179ce592b..8753c084455 100644 --- a/pwiz_tools/Skyline/Test/AnalyticsTest.cs +++ b/pwiz_tools/Skyline/Test/AnalyticsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2022 diff --git a/pwiz_tools/Skyline/Test/AnnotatedDoubleTest.cs b/pwiz_tools/Skyline/Test/AnnotatedDoubleTest.cs index 53d2218edbf..e23180b2987 100644 --- a/pwiz_tools/Skyline/Test/AnnotatedDoubleTest.cs +++ b/pwiz_tools/Skyline/Test/AnnotatedDoubleTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/AnnotationUnitTest.cs b/pwiz_tools/Skyline/Test/AnnotationUnitTest.cs index 0c02158ab70..26b3f114e24 100644 --- a/pwiz_tools/Skyline/Test/AnnotationUnitTest.cs +++ b/pwiz_tools/Skyline/Test/AnnotationUnitTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/AntivirusExclusionTest.cs b/pwiz_tools/Skyline/Test/AntivirusExclusionTest.cs index a391530c5d0..4d7a50a4242 100644 --- a/pwiz_tools/Skyline/Test/AntivirusExclusionTest.cs +++ b/pwiz_tools/Skyline/Test/AntivirusExclusionTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/ArdiaMarshalingTest.cs b/pwiz_tools/Skyline/Test/ArdiaMarshalingTest.cs index 7d9e0450cc4..d588d071b1e 100644 --- a/pwiz_tools/Skyline/Test/ArdiaMarshalingTest.cs +++ b/pwiz_tools/Skyline/Test/ArdiaMarshalingTest.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2025 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Skyline/Test/AuditLogListTest.cs b/pwiz_tools/Skyline/Test/AuditLogListTest.cs index 65929a11d3e..da07f9a7634 100644 --- a/pwiz_tools/Skyline/Test/AuditLogListTest.cs +++ b/pwiz_tools/Skyline/Test/AuditLogListTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/BilinearCurveFitTest.cs b/pwiz_tools/Skyline/Test/BilinearCurveFitTest.cs index 3b754eb28a1..50832dae954 100644 --- a/pwiz_tools/Skyline/Test/BilinearCurveFitTest.cs +++ b/pwiz_tools/Skyline/Test/BilinearCurveFitTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/BilinearFitTest.cs b/pwiz_tools/Skyline/Test/BilinearFitTest.cs index 05d08e4c825..d9b50d5dd76 100644 --- a/pwiz_tools/Skyline/Test/BilinearFitTest.cs +++ b/pwiz_tools/Skyline/Test/BilinearFitTest.cs @@ -1,4 +1,4 @@ -using MathNet.Numerics.LinearRegression; +using MathNet.Numerics.LinearRegression; using Microsoft.VisualStudio.TestTools.UnitTesting; using pwiz.SkylineTestUtil; using System; diff --git a/pwiz_tools/Skyline/Test/BookmarkEnumeratorTest.cs b/pwiz_tools/Skyline/Test/BookmarkEnumeratorTest.cs index 3144d1e7ff0..1474a678a27 100644 --- a/pwiz_tools/Skyline/Test/BookmarkEnumeratorTest.cs +++ b/pwiz_tools/Skyline/Test/BookmarkEnumeratorTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/BookmarkEnumeratorTest.sky b/pwiz_tools/Skyline/Test/BookmarkEnumeratorTest.sky index 5c745bbfd9d..3b104710af2 100644 --- a/pwiz_tools/Skyline/Test/BookmarkEnumeratorTest.sky +++ b/pwiz_tools/Skyline/Test/BookmarkEnumeratorTest.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Test/BookmarkEnumeratorTest2.sky b/pwiz_tools/Skyline/Test/BookmarkEnumeratorTest2.sky index 1ee937175d8..5d9f736e9d1 100644 --- a/pwiz_tools/Skyline/Test/BookmarkEnumeratorTest2.sky +++ b/pwiz_tools/Skyline/Test/BookmarkEnumeratorTest2.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Test/CalibrationCurveOptionsTest.cs b/pwiz_tools/Skyline/Test/CalibrationCurveOptionsTest.cs index f9c7faa2f74..278f1ed960d 100644 --- a/pwiz_tools/Skyline/Test/CalibrationCurveOptionsTest.cs +++ b/pwiz_tools/Skyline/Test/CalibrationCurveOptionsTest.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.IO; using System.Xml.Serialization; using Microsoft.VisualStudio.TestTools.UnitTesting; diff --git a/pwiz_tools/Skyline/Test/ChromPeakTest.cs b/pwiz_tools/Skyline/Test/ChromPeakTest.cs index a43e68a47d0..95719e0e94b 100644 --- a/pwiz_tools/Skyline/Test/ChromPeakTest.cs +++ b/pwiz_tools/Skyline/Test/ChromPeakTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/ChromTransitionTest.cs b/pwiz_tools/Skyline/Test/ChromTransitionTest.cs index a68aec47a51..171f2ea39f6 100644 --- a/pwiz_tools/Skyline/Test/ChromTransitionTest.cs +++ b/pwiz_tools/Skyline/Test/ChromTransitionTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/ChromatogramExporterTest.cs b/pwiz_tools/Skyline/Test/ChromatogramExporterTest.cs index cace5642099..4ef8ca9bbe7 100644 --- a/pwiz_tools/Skyline/Test/ChromatogramExporterTest.cs +++ b/pwiz_tools/Skyline/Test/ChromatogramExporterTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Dario Amodei , * Mallick Lab, Department of Radiology, Stanford * diff --git a/pwiz_tools/Skyline/Test/ChromatogramGroupIdsTest.cs b/pwiz_tools/Skyline/Test/ChromatogramGroupIdsTest.cs index 845b2fbcf9d..431e7be880e 100644 --- a/pwiz_tools/Skyline/Test/ChromatogramGroupIdsTest.cs +++ b/pwiz_tools/Skyline/Test/ChromatogramGroupIdsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/CmdLineAssociateProteinsTest.cs b/pwiz_tools/Skyline/Test/CmdLineAssociateProteinsTest.cs index 0ab1fcbc541..99044723fdb 100644 --- a/pwiz_tools/Skyline/Test/CmdLineAssociateProteinsTest.cs +++ b/pwiz_tools/Skyline/Test/CmdLineAssociateProteinsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/CmdLineAssociateProteinsTest.data/AssociateProteinsTest.sky b/pwiz_tools/Skyline/Test/CmdLineAssociateProteinsTest.data/AssociateProteinsTest.sky index 2ea417c00b7..2948279344f 100644 --- a/pwiz_tools/Skyline/Test/CmdLineAssociateProteinsTest.data/AssociateProteinsTest.sky +++ b/pwiz_tools/Skyline/Test/CmdLineAssociateProteinsTest.data/AssociateProteinsTest.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Test/CodeInspectionTest.cs b/pwiz_tools/Skyline/Test/CodeInspectionTest.cs index 85d424cb7b4..c6c0eaf5550 100644 --- a/pwiz_tools/Skyline/Test/CodeInspectionTest.cs +++ b/pwiz_tools/Skyline/Test/CodeInspectionTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * @@ -31,6 +31,7 @@ using System.IO; using System.Linq; using System.Reflection; +using System.Resources; using System.Runtime.InteropServices; using System.Text; using System.Text.RegularExpressions; @@ -216,6 +217,16 @@ void AddForbiddenUIInspection(string fileMask, string cue, string why, int numbe false, // Pattern is a regular expression @"Use of P/Invoke is not allowed. Instead, use the interop library in pwiz.Common.SystemUtil.PInvoke."); // Explanation for prohibition, appears in report + // Looking for uses of Encoding.UTF8 in file writing operations that will create BOM + AddTextInspection(@"*.cs", // Examine files with this mask + Inspection.Forbidden, // This is a test for things that should NOT be in such files + Level.Error, // Any failure is treated as an error, and overall test fails + null, // There are no parts of the codebase that should skip this check + string.Empty, // No file content required for inspection + @"(new XmlTextWriter|File\.WriteAllText|File\.WriteAllLines|\.SaveAsXml|new StreamWriter)\(.*Encoding\.UTF8[^E]", // Forbidden pattern - catches file writing with Encoding.UTF8 (but not UTF8Encoding) + true, // Pattern is a regular expression + @"Encoding.UTF8 includes a BOM by default. Use 'new UTF8Encoding(false)' for UTF-8 without BOM, or 'new UTF8Encoding(true)' if you explicitly need a BOM."); // Explanation for prohibition, appears in report + FilesTreeDataModelInspection(); // A few lines of fake tests that can be useful in development of this mechanism @@ -643,8 +654,160 @@ private static void InspectPInvokeApi(string root, List errors) } } + //TODO: FIX THIS FOR NEW DESIGN ARCHITECTURE + + /// + /// Tests all implementing classes of GlobalizedObject to ensure that each property has a corresponding resource string. + /// The test also requires that each non-abstract GlobalizedObject has a static ResourceManager method. + /// Necessary to prevent issues when someone renames a property without updating the corresponding resource string. + /// + void InspectPropertySheetResources(string root, List errors) + { + var skylineAssembly = typeof(SkylineWindow).Assembly; + var types = skylineAssembly.GetTypes() + .Where(t => t.IsSubclassOf(typeof(GlobalizedObject)) && !t.IsAbstract) + .ToList(); + + foreach (var type in types) + { + VerifyPropertySheetResources(type, errors); + } + } + + private static void VerifyPropertySheetResources(Type type, List errors) + { + // Verify that the GlobalizedObject has a ResourceManager + var resourceManagerMethod = type.GetMethod("ResourceManager", BindingFlags.NonPublic | BindingFlags.Static); + if (resourceManagerMethod == null || resourceManagerMethod.ReturnType != typeof(ResourceManager)) + { + errors.Add($"{type.Name} does not provide a static ResourceManager() => ResourceManager method. No way to verify all property name resources are present."); + return; + } + + foreach (var prop in type.GetProperties()) if (!prop.IsDefined(null, inherit: true)) + { + // Verify that the property has a resource + var resourceManager = (ResourceManager)resourceManagerMethod.Invoke(null, new object[] { }); + if (resourceManager.GetString(prop.Name) == null) + errors.Add($"Property name resource not found for property '{prop.Name}' in class '{type.Name}'. Ensure there is a matching entry in the resource file. (Did the name of the property change?)"); + + // Verify nested properties + if (prop.GetType().IsAssignableFrom(typeof(GlobalizedObject))) + VerifyPropertySheetResources(prop.GetType(), errors); + } + } + + /// + /// Inspect source files for UTF-8 BOM (Byte Order Mark). + /// Modern best practice is UTF-8 without BOM for source code. + /// BOM causes issues with Unix/Linux tools, Git diffs, and cross-platform compatibility. + /// + /// This inspection automatically removes BOMs from files when found, similar to how + /// SchemaDocumentsTest automatically creates missing schema files. + /// + private static void InspectUtf8Bom(string root, List errors) + { + var utf8Bom = new byte[] { 0xEF, 0xBB, 0xBF }; + + // Auto-generated files that are allowed to have BOM (regenerated by Visual Studio from COM type libraries) + var allowedBomExtensions = new[] { ".tli", ".tlh" }; + + // Directories to skip (build outputs, Git submodules, etc.) + var skipDirectories = new[] { "\\bin\\", "\\obj\\", "\\Executables\\BullseyeSharp\\", "\\Executables\\Hardklor\\", "\\Executables\\DevTools\\DocumentConverter\\" }; + + // Search paths: Skyline and Shared directories + var searchPaths = new List { root }; + var sharedCommon = Path.Combine(root, "..", "Shared", "Common"); + var sharedCommonUtil = Path.Combine(root, "..", "Shared", "CommonUtil"); + if (Directory.Exists(sharedCommon)) + searchPaths.Add(sharedCommon); + if (Directory.Exists(sharedCommonUtil)) + searchPaths.Add(sharedCommonUtil); + + // File types to check + var fileMasks = new[] { "*.cs", "*.cpp", "*.h", "*.resx", "*.xml", "*.config", "*.csproj", "*.sln", "*.xsd" }; + + // ReSharper disable once CollectionNeverQueried.Local + var filesWithBom = new List(); + var filesFixed = new List(); + + foreach (var searchPath in searchPaths) + { + foreach (var mask in fileMasks) + { + foreach (var file in Directory.GetFiles(searchPath, mask, SearchOption.AllDirectories)) + { + // Skip build output directories and Git submodules + if (skipDirectories.Any(dir => file.Contains(dir))) + continue; + + // Skip auto-generated COM type library files + var extension = Path.GetExtension(file); + if (allowedBomExtensions.Contains(extension)) + continue; + + try + { + var bytes = File.ReadAllBytes(file); + if (bytes.Length >= 3 && + bytes[0] == utf8Bom[0] && + bytes[1] == utf8Bom[1] && + bytes[2] == utf8Bom[2]) + { + filesWithBom.Add(file); + + // Automatically remove BOM + var creationTime = File.GetCreationTime(file); + var lastWriteTime = File.GetLastWriteTime(file); + var lastAccessTime = File.GetLastAccessTime(file); + + // Remove BOM (skip first 3 bytes) + var newBytes = new byte[bytes.Length - 3]; + Array.Copy(bytes, 3, newBytes, 0, newBytes.Length); + + // Write file without BOM + File.WriteAllBytes(file, newBytes); + + // Restore timestamps + File.SetCreationTime(file, creationTime); + File.SetLastWriteTime(file, lastWriteTime); + File.SetLastAccessTime(file, lastAccessTime); + + filesFixed.Add(file); + } + } + catch + { + // Skip files that can't be read or written + } + } + } + } + + if (filesFixed.Any()) + { + errors.Add(string.Empty); + errors.Add($"ERROR: Found and automatically removed UTF-8 BOM from {filesFixed.Count} file(s):"); + foreach (var file in filesFixed) + { + var relativePath = file.Replace(root, string.Empty).TrimStart('\\', '/'); + errors.Add($" - {relativePath}"); + } + errors.Add(string.Empty); + errors.Add("The BOM has been automatically removed from these files."); + errors.Add("Please review the changes with 'git diff' and commit them."); + errors.Add(string.Empty); + errors.Add("Modern best practice is UTF-8 without BOM for all source files."); + errors.Add("BOM causes issues with Unix/Linux tools, Git diffs, and cross-platform compatibility."); + errors.Add("See STYLEGUIDE.md for encoding guidelines."); + errors.Add(string.Empty); + errors.Add("DO NOT ignore this error - the fixed files must be committed to prevent this error"); + errors.Add("from appearing on TeamCity and in nightly test runs."); + } + } + /// - /// Look for strings which have been localized but not moved from main Resources.resx to more appropriate locations + /// Look for strings which have been localized but not moved from main Resources.resx to more appropriate locations /// void InspectMisplacedResources(string root, List errors) { @@ -860,6 +1023,8 @@ List CheckForToleratedError(PatternDetails patternDetails, List InspectInconsistentSetting(root, results); // Look for conflicts between settings.settings and app.config InspectPInvokeApi(root, results); + + InspectUtf8Bom(root, results); // Check for UTF-8 BOM and automatically remove it InspectRedundantCsprojResourcesFromSolution(root, results); // Look for images in .csproj files that are redundant with the RESX entries @@ -940,8 +1105,8 @@ List CheckForToleratedError(PatternDetails patternDetails, List var result = CheckForToleratedError(patternDetails, errors, warnings, errorCounts, out var tolerated); result.Add(@"Found prohibited use of"); result.Add(@"""" + pattern.PatternString.Replace("\n", "\\n") + @""""); - result.Add("(" + why + ") at"); - result.Add(filename + "(" + lineNum + @")"); + result.Add("(" + why + ")"); + result.Add($" at {Path.GetFileName(filename)} in {filename}:line {lineNum}"); result.Add(line); if (tolerated != null) { diff --git a/pwiz_tools/Skyline/Test/CommandLineAssayImportTest.cs b/pwiz_tools/Skyline/Test/CommandLineAssayImportTest.cs index dace9cf3f50..fb1df259528 100644 --- a/pwiz_tools/Skyline/Test/CommandLineAssayImportTest.cs +++ b/pwiz_tools/Skyline/Test/CommandLineAssayImportTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/CommandLineImportAnnotationsTest.cs b/pwiz_tools/Skyline/Test/CommandLineImportAnnotationsTest.cs index adbac3d7bdf..426af8b1b6c 100644 --- a/pwiz_tools/Skyline/Test/CommandLineImportAnnotationsTest.cs +++ b/pwiz_tools/Skyline/Test/CommandLineImportAnnotationsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/CommandLineImportDocTest.cs b/pwiz_tools/Skyline/Test/CommandLineImportDocTest.cs index cf92c54873e..66f66de5356 100644 --- a/pwiz_tools/Skyline/Test/CommandLineImportDocTest.cs +++ b/pwiz_tools/Skyline/Test/CommandLineImportDocTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/CommandLineMProphetTest.cs b/pwiz_tools/Skyline/Test/CommandLineMProphetTest.cs index c80aa72b85b..d00e1c31617 100644 --- a/pwiz_tools/Skyline/Test/CommandLineMProphetTest.cs +++ b/pwiz_tools/Skyline/Test/CommandLineMProphetTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/CommandLinePeakBoundaryTest.cs b/pwiz_tools/Skyline/Test/CommandLinePeakBoundaryTest.cs index ece9f691ff7..d317e6294a8 100644 --- a/pwiz_tools/Skyline/Test/CommandLinePeakBoundaryTest.cs +++ b/pwiz_tools/Skyline/Test/CommandLinePeakBoundaryTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Dario Amodei , * Mallick Lab, Department of Radiology, Stanford * diff --git a/pwiz_tools/Skyline/Test/CommandLineThermoMethodTest.cs b/pwiz_tools/Skyline/Test/CommandLineThermoMethodTest.cs index 697081677df..2292be65b33 100644 --- a/pwiz_tools/Skyline/Test/CommandLineThermoMethodTest.cs +++ b/pwiz_tools/Skyline/Test/CommandLineThermoMethodTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/ComplexFragmentIonTest.cs b/pwiz_tools/Skyline/Test/ComplexFragmentIonTest.cs index 631fb7df8a6..a2da60967c6 100644 --- a/pwiz_tools/Skyline/Test/ComplexFragmentIonTest.cs +++ b/pwiz_tools/Skyline/Test/ComplexFragmentIonTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/CopyFileWithProgressTest.cs b/pwiz_tools/Skyline/Test/CopyFileWithProgressTest.cs index 85facaf0e85..2a194f816d6 100644 --- a/pwiz_tools/Skyline/Test/CopyFileWithProgressTest.cs +++ b/pwiz_tools/Skyline/Test/CopyFileWithProgressTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/CreateTextSequencesTest.cs b/pwiz_tools/Skyline/Test/CreateTextSequencesTest.cs index 519a14d0ab5..a354d542b26 100644 --- a/pwiz_tools/Skyline/Test/CreateTextSequencesTest.cs +++ b/pwiz_tools/Skyline/Test/CreateTextSequencesTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/CrosslinkModTest.cs b/pwiz_tools/Skyline/Test/CrosslinkModTest.cs index 4e80903dcc6..38fde9e4ac2 100644 --- a/pwiz_tools/Skyline/Test/CrosslinkModTest.cs +++ b/pwiz_tools/Skyline/Test/CrosslinkModTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/CrosslinkSequenceParserTest.cs b/pwiz_tools/Skyline/Test/CrosslinkSequenceParserTest.cs index 9ddd39fc9f6..2bf7a2c53f1 100644 --- a/pwiz_tools/Skyline/Test/CrosslinkSequenceParserTest.cs +++ b/pwiz_tools/Skyline/Test/CrosslinkSequenceParserTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/CustomMoleculeTest.cs b/pwiz_tools/Skyline/Test/CustomMoleculeTest.cs index 1a4bd5e8509..9565b536324 100644 --- a/pwiz_tools/Skyline/Test/CustomMoleculeTest.cs +++ b/pwiz_tools/Skyline/Test/CustomMoleculeTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/DigestionTest.cs b/pwiz_tools/Skyline/Test/DigestionTest.cs index 47f17fb3651..a73668b387f 100644 --- a/pwiz_tools/Skyline/Test/DigestionTest.cs +++ b/pwiz_tools/Skyline/Test/DigestionTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/DiskSpaceTest.cs b/pwiz_tools/Skyline/Test/DiskSpaceTest.cs index 65a1d2e6965..bbff6e24587 100644 --- a/pwiz_tools/Skyline/Test/DiskSpaceTest.cs +++ b/pwiz_tools/Skyline/Test/DiskSpaceTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Aaron Banse , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/DllFinderUnitTest.cs b/pwiz_tools/Skyline/Test/DllFinderUnitTest.cs index 7914cd040d6..33ba5133ff2 100644 --- a/pwiz_tools/Skyline/Test/DllFinderUnitTest.cs +++ b/pwiz_tools/Skyline/Test/DllFinderUnitTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/DocLoadLibraryTest.cs b/pwiz_tools/Skyline/Test/DocLoadLibraryTest.cs index 9748749774b..111e074aa9b 100644 --- a/pwiz_tools/Skyline/Test/DocLoadLibraryTest.cs +++ b/pwiz_tools/Skyline/Test/DocLoadLibraryTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/DocumentSerializerTest.cs b/pwiz_tools/Skyline/Test/DocumentSerializerTest.cs index f340e82ca18..77450bf35bd 100644 --- a/pwiz_tools/Skyline/Test/DocumentSerializerTest.cs +++ b/pwiz_tools/Skyline/Test/DocumentSerializerTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/DocumentSerializerTest.sky b/pwiz_tools/Skyline/Test/DocumentSerializerTest.sky index 3b1638cc0d2..40fce56c221 100644 --- a/pwiz_tools/Skyline/Test/DocumentSerializerTest.sky +++ b/pwiz_tools/Skyline/Test/DocumentSerializerTest.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Test/ElementLocatorTest.cs b/pwiz_tools/Skyline/Test/ElementLocatorTest.cs index fe5ba00f518..3c07a4dd759 100644 --- a/pwiz_tools/Skyline/Test/ElementLocatorTest.cs +++ b/pwiz_tools/Skyline/Test/ElementLocatorTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/ElibQuantifiableTransitionTest.cs b/pwiz_tools/Skyline/Test/ElibQuantifiableTransitionTest.cs index 53c205aabaa..469b324c9c8 100644 --- a/pwiz_tools/Skyline/Test/ElibQuantifiableTransitionTest.cs +++ b/pwiz_tools/Skyline/Test/ElibQuantifiableTransitionTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/EncryptedTokenTest.cs b/pwiz_tools/Skyline/Test/EncryptedTokenTest.cs index 75b22bd4cad..ea9badebd4a 100644 --- a/pwiz_tools/Skyline/Test/EncryptedTokenTest.cs +++ b/pwiz_tools/Skyline/Test/EncryptedTokenTest.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2025 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Skyline/Test/EncyclopeDiaHelpersTest.cs b/pwiz_tools/Skyline/Test/EncyclopeDiaHelpersTest.cs index 567b7534974..522599f6e6a 100644 --- a/pwiz_tools/Skyline/Test/EncyclopeDiaHelpersTest.cs +++ b/pwiz_tools/Skyline/Test/EncyclopeDiaHelpersTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2022 University of Washington - Seattle, WA diff --git a/pwiz_tools/Skyline/Test/EspTest.cs b/pwiz_tools/Skyline/Test/EspTest.cs index 699657b6fb0..04448e355d5 100644 --- a/pwiz_tools/Skyline/Test/EspTest.cs +++ b/pwiz_tools/Skyline/Test/EspTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/ExplicitLossTest.cs b/pwiz_tools/Skyline/Test/ExplicitLossTest.cs index 40720e38513..687812d1c7f 100644 --- a/pwiz_tools/Skyline/Test/ExplicitLossTest.cs +++ b/pwiz_tools/Skyline/Test/ExplicitLossTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/ExtractedMetadataTest.cs b/pwiz_tools/Skyline/Test/ExtractedMetadataTest.cs index 0c13f32c607..753aa201a3c 100644 --- a/pwiz_tools/Skyline/Test/ExtractedMetadataTest.cs +++ b/pwiz_tools/Skyline/Test/ExtractedMetadataTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/FastaImporterTest.cs b/pwiz_tools/Skyline/Test/FastaImporterTest.cs index eec1bf46fc5..501500bc26e 100644 --- a/pwiz_tools/Skyline/Test/FastaImporterTest.cs +++ b/pwiz_tools/Skyline/Test/FastaImporterTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/FastaSequenceTest.cs b/pwiz_tools/Skyline/Test/FastaSequenceTest.cs index a2d7fc3e1a8..f45c49579d8 100644 --- a/pwiz_tools/Skyline/Test/FastaSequenceTest.cs +++ b/pwiz_tools/Skyline/Test/FastaSequenceTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/FeatureTooltipTest.cs b/pwiz_tools/Skyline/Test/FeatureTooltipTest.cs index 8a25a8dbc88..654f14ea91c 100644 --- a/pwiz_tools/Skyline/Test/FeatureTooltipTest.cs +++ b/pwiz_tools/Skyline/Test/FeatureTooltipTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/FilteredMessageWriterTest.cs b/pwiz_tools/Skyline/Test/FilteredMessageWriterTest.cs index ab2c3ddb747..9d7e2de36e8 100644 --- a/pwiz_tools/Skyline/Test/FilteredMessageWriterTest.cs +++ b/pwiz_tools/Skyline/Test/FilteredMessageWriterTest.cs @@ -1,4 +1,4 @@ -/* +/* * Author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/FindNodeTest.cs b/pwiz_tools/Skyline/Test/FindNodeTest.cs index d5b6eaf992f..2f7477727cf 100644 --- a/pwiz_tools/Skyline/Test/FindNodeTest.cs +++ b/pwiz_tools/Skyline/Test/FindNodeTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Alana Killeen , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/FragmentedMoleculeTest.cs b/pwiz_tools/Skyline/Test/FragmentedMoleculeTest.cs index 3fc4dbe8ebc..0ffb26c07d4 100644 --- a/pwiz_tools/Skyline/Test/FragmentedMoleculeTest.cs +++ b/pwiz_tools/Skyline/Test/FragmentedMoleculeTest.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections.Generic; using System.Linq; using Microsoft.VisualStudio.TestTools.UnitTesting; diff --git a/pwiz_tools/Skyline/Test/ImmutableListTest.cs b/pwiz_tools/Skyline/Test/ImmutableListTest.cs index fb0bfe24563..095f8bbbb89 100644 --- a/pwiz_tools/Skyline/Test/ImmutableListTest.cs +++ b/pwiz_tools/Skyline/Test/ImmutableListTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/InstallNvidiaTest.cs b/pwiz_tools/Skyline/Test/InstallNvidiaTest.cs index 7b79b370cf9..ac5015d0710 100644 --- a/pwiz_tools/Skyline/Test/InstallNvidiaTest.cs +++ b/pwiz_tools/Skyline/Test/InstallNvidiaTest.cs @@ -1,4 +1,4 @@ -/* +/* * Author: David Shteynberg , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/InternetAccessTest.cs b/pwiz_tools/Skyline/Test/InternetAccessTest.cs index b8161523e15..a69eea95a66 100644 --- a/pwiz_tools/Skyline/Test/InternetAccessTest.cs +++ b/pwiz_tools/Skyline/Test/InternetAccessTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/IonMobilityUnitTest.cs b/pwiz_tools/Skyline/Test/IonMobilityUnitTest.cs index a5a9f625b31..e7f2fcc9e0c 100644 --- a/pwiz_tools/Skyline/Test/IonMobilityUnitTest.cs +++ b/pwiz_tools/Skyline/Test/IonMobilityUnitTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/IpiToUniprotTest.cs b/pwiz_tools/Skyline/Test/IpiToUniprotTest.cs index 045e407d837..c7656ad6c44 100644 --- a/pwiz_tools/Skyline/Test/IpiToUniprotTest.cs +++ b/pwiz_tools/Skyline/Test/IpiToUniprotTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/LibraryLoadTest.cs b/pwiz_tools/Skyline/Test/LibraryLoadTest.cs index 7502676b6bd..c9120ac57b2 100644 --- a/pwiz_tools/Skyline/Test/LibraryLoadTest.cs +++ b/pwiz_tools/Skyline/Test/LibraryLoadTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/LibraryRankedSpectrumInfoSpeedTest.cs b/pwiz_tools/Skyline/Test/LibraryRankedSpectrumInfoSpeedTest.cs index 888147f4635..aa80d48b0b8 100644 --- a/pwiz_tools/Skyline/Test/LibraryRankedSpectrumInfoSpeedTest.cs +++ b/pwiz_tools/Skyline/Test/LibraryRankedSpectrumInfoSpeedTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/LibraryRankedSpectrumInfoTest.cs b/pwiz_tools/Skyline/Test/LibraryRankedSpectrumInfoTest.cs index 8e2cd651454..0fe54cb8f13 100644 --- a/pwiz_tools/Skyline/Test/LibraryRankedSpectrumInfoTest.cs +++ b/pwiz_tools/Skyline/Test/LibraryRankedSpectrumInfoTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/LinearInLogSpaceTest.cs b/pwiz_tools/Skyline/Test/LinearInLogSpaceTest.cs index 7fe1339eb95..5b4996d0d6b 100644 --- a/pwiz_tools/Skyline/Test/LinearInLogSpaceTest.cs +++ b/pwiz_tools/Skyline/Test/LinearInLogSpaceTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/ListDataTest.cs b/pwiz_tools/Skyline/Test/ListDataTest.cs index 799b43d943e..7f1d2527760 100644 --- a/pwiz_tools/Skyline/Test/ListDataTest.cs +++ b/pwiz_tools/Skyline/Test/ListDataTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/ListDefTest.cs b/pwiz_tools/Skyline/Test/ListDefTest.cs index d41b09b528e..c8c13808d4d 100644 --- a/pwiz_tools/Skyline/Test/ListDefTest.cs +++ b/pwiz_tools/Skyline/Test/ListDefTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/ListItemTest.cs b/pwiz_tools/Skyline/Test/ListItemTest.cs index 38adf865fc6..190be2f9fa3 100644 --- a/pwiz_tools/Skyline/Test/ListItemTest.cs +++ b/pwiz_tools/Skyline/Test/ListItemTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/LocalizedHtmlTutorialsTest.cs b/pwiz_tools/Skyline/Test/LocalizedHtmlTutorialsTest.cs index 16ae45ed741..19c75a56f91 100644 --- a/pwiz_tools/Skyline/Test/LocalizedHtmlTutorialsTest.cs +++ b/pwiz_tools/Skyline/Test/LocalizedHtmlTutorialsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/LongPathDirectoryTest.cs b/pwiz_tools/Skyline/Test/LongPathDirectoryTest.cs index 29894c36c4a..5ca9893322e 100644 --- a/pwiz_tools/Skyline/Test/LongPathDirectoryTest.cs +++ b/pwiz_tools/Skyline/Test/LongPathDirectoryTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: David Shteynberg , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/LossesTest.cs b/pwiz_tools/Skyline/Test/LossesTest.cs index ad42935675d..e5273bab71c 100644 --- a/pwiz_tools/Skyline/Test/LossesTest.cs +++ b/pwiz_tools/Skyline/Test/LossesTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/MProphetResultsHandlerTest.cs b/pwiz_tools/Skyline/Test/MProphetResultsHandlerTest.cs index 310df3a1b82..805a5bab88e 100644 --- a/pwiz_tools/Skyline/Test/MProphetResultsHandlerTest.cs +++ b/pwiz_tools/Skyline/Test/MProphetResultsHandlerTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Dario Amodei , * Mallick Lab, Department of Radiology, Stanford * diff --git a/pwiz_tools/Skyline/Test/MProphetScoringModelTest.cs b/pwiz_tools/Skyline/Test/MProphetScoringModelTest.cs index 96021189627..0d09585a449 100644 --- a/pwiz_tools/Skyline/Test/MProphetScoringModelTest.cs +++ b/pwiz_tools/Skyline/Test/MProphetScoringModelTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/MQuestScoringTest.cs b/pwiz_tools/Skyline/Test/MQuestScoringTest.cs index b960cf45d07..50bfdde1476 100644 --- a/pwiz_tools/Skyline/Test/MQuestScoringTest.cs +++ b/pwiz_tools/Skyline/Test/MQuestScoringTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/MSstats/Averaging/MSstatsAveragingTest.cs b/pwiz_tools/Skyline/Test/MSstats/Averaging/MSstatsAveragingTest.cs index 7d85a7c6f9b..ee87179d708 100644 --- a/pwiz_tools/Skyline/Test/MSstats/Averaging/MSstatsAveragingTest.cs +++ b/pwiz_tools/Skyline/Test/MSstats/Averaging/MSstatsAveragingTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/MSstats/Averaging/RatPlasmaTestingResult.csv b/pwiz_tools/Skyline/Test/MSstats/Averaging/RatPlasmaTestingResult.csv index 5e063e95405..24c343ff722 100644 --- a/pwiz_tools/Skyline/Test/MSstats/Averaging/RatPlasmaTestingResult.csv +++ b/pwiz_tools/Skyline/Test/MSstats/Averaging/RatPlasmaTestingResult.csv @@ -1,4 +1,4 @@ -"","Protein","Label","log2FC","SE","Tvalue","DF","pvalue","adj.pvalue" +"","Protein","Label","log2FC","SE","Tvalue","DF","pvalue","adj.pvalue" "1","AAPITQYLK","OnePeptidePerProtein",-0.662991464291044,0.287314308583631,-2.30754767334555,12,0.0396519490587715,0.0678971730458415 "2","AAVFNHFISDGVK","OnePeptidePerProtein",0.901875258093783,0.239935280022084,3.75882720544796,12,0.00272673930511291,0.0106513254105973 "3","AEQGAYLGPLPYK","OnePeptidePerProtein",0.931245049993546,0.434230096574878,2.14458891113035,12,0.0531541504475126,0.0810276683651107 diff --git a/pwiz_tools/Skyline/Test/MSstats/Averaging/Rat_plasma.sky b/pwiz_tools/Skyline/Test/MSstats/Averaging/Rat_plasma.sky index 8bef86846fd..6e602ba56f0 100644 --- a/pwiz_tools/Skyline/Test/MSstats/Averaging/Rat_plasma.sky +++ b/pwiz_tools/Skyline/Test/MSstats/Averaging/Rat_plasma.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Test/MSstats/MedianPolishTest.cs b/pwiz_tools/Skyline/Test/MSstats/MedianPolishTest.cs index cf83f97522b..1ded6fe91a1 100644 --- a/pwiz_tools/Skyline/Test/MSstats/MedianPolishTest.cs +++ b/pwiz_tools/Skyline/Test/MSstats/MedianPolishTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/MSstats/MsStatsTest.cs b/pwiz_tools/Skyline/Test/MSstats/MsStatsTest.cs index 98195676a54..3bfcaeb7160 100644 --- a/pwiz_tools/Skyline/Test/MSstats/MsStatsTest.cs +++ b/pwiz_tools/Skyline/Test/MSstats/MsStatsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/MSstats/MsStatsTestUtil.cs b/pwiz_tools/Skyline/Test/MSstats/MsStatsTestUtil.cs index a673b0fc8ba..96ad42ce80b 100644 --- a/pwiz_tools/Skyline/Test/MSstats/MsStatsTestUtil.cs +++ b/pwiz_tools/Skyline/Test/MSstats/MsStatsTestUtil.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/MSstats/Normalization/BrudererSubset.sky b/pwiz_tools/Skyline/Test/MSstats/Normalization/BrudererSubset.sky index cbcb5e72d32..473ab5491ce 100644 --- a/pwiz_tools/Skyline/Test/MSstats/Normalization/BrudererSubset.sky +++ b/pwiz_tools/Skyline/Test/MSstats/Normalization/BrudererSubset.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Test/MSstats/Normalization/BrudererSubsetAsSmallMolecules.sky b/pwiz_tools/Skyline/Test/MSstats/Normalization/BrudererSubsetAsSmallMolecules.sky index 32a1eee5ebc..2b2a93f9863 100644 --- a/pwiz_tools/Skyline/Test/MSstats/Normalization/BrudererSubsetAsSmallMolecules.sky +++ b/pwiz_tools/Skyline/Test/MSstats/Normalization/BrudererSubsetAsSmallMolecules.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Test/MSstats/Normalization/MsStatsNormalizationTest.cs b/pwiz_tools/Skyline/Test/MSstats/Normalization/MsStatsNormalizationTest.cs index 797e6d3aba6..95abb5d2605 100644 --- a/pwiz_tools/Skyline/Test/MSstats/Normalization/MsStatsNormalizationTest.cs +++ b/pwiz_tools/Skyline/Test/MSstats/Normalization/MsStatsNormalizationTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/MSstats/PValuesTest.cs b/pwiz_tools/Skyline/Test/MSstats/PValuesTest.cs index cd01ed4eca9..d5b99db0a0f 100644 --- a/pwiz_tools/Skyline/Test/MSstats/PValuesTest.cs +++ b/pwiz_tools/Skyline/Test/MSstats/PValuesTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/MSstats/WithRunQuantification/GroupComparisonRunQuantificationTest.cs b/pwiz_tools/Skyline/Test/MSstats/WithRunQuantification/GroupComparisonRunQuantificationTest.cs index 034fffabbe8..9202b0a5458 100644 --- a/pwiz_tools/Skyline/Test/MSstats/WithRunQuantification/GroupComparisonRunQuantificationTest.cs +++ b/pwiz_tools/Skyline/Test/MSstats/WithRunQuantification/GroupComparisonRunQuantificationTest.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections.Generic; using System.Globalization; using System.IO; diff --git a/pwiz_tools/Skyline/Test/MassListInputsTest.cs b/pwiz_tools/Skyline/Test/MassListInputsTest.cs index e38f93bb22e..7ce52f7ccaf 100644 --- a/pwiz_tools/Skyline/Test/MassListInputsTest.cs +++ b/pwiz_tools/Skyline/Test/MassListInputsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/MassListIonsTest.cs b/pwiz_tools/Skyline/Test/MassListIonsTest.cs index 6550912575b..f4f606fe931 100644 --- a/pwiz_tools/Skyline/Test/MassListIonsTest.cs +++ b/pwiz_tools/Skyline/Test/MassListIonsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/MatchExpressionTest.cs b/pwiz_tools/Skyline/Test/MatchExpressionTest.cs index c0fbd165635..086c4e84666 100644 --- a/pwiz_tools/Skyline/Test/MatchExpressionTest.cs +++ b/pwiz_tools/Skyline/Test/MatchExpressionTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/MeasuredIonTest.cs b/pwiz_tools/Skyline/Test/MeasuredIonTest.cs index cf2fe495cdb..1ea629473b4 100644 --- a/pwiz_tools/Skyline/Test/MeasuredIonTest.cs +++ b/pwiz_tools/Skyline/Test/MeasuredIonTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/ModEquivalentTest.cs b/pwiz_tools/Skyline/Test/ModEquivalentTest.cs index 41421bbfb4c..a6b67a62c12 100644 --- a/pwiz_tools/Skyline/Test/ModEquivalentTest.cs +++ b/pwiz_tools/Skyline/Test/ModEquivalentTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Shannon Joyner , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/ModificationMatcherTest.cs b/pwiz_tools/Skyline/Test/ModificationMatcherTest.cs index c190a4c47df..abb61e19cd3 100644 --- a/pwiz_tools/Skyline/Test/ModificationMatcherTest.cs +++ b/pwiz_tools/Skyline/Test/ModificationMatcherTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Alana Killeen , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/ModifiedSequenceTest.cs b/pwiz_tools/Skyline/Test/ModifiedSequenceTest.cs index d25cf885df4..dd4a637550d 100644 --- a/pwiz_tools/Skyline/Test/ModifiedSequenceTest.cs +++ b/pwiz_tools/Skyline/Test/ModifiedSequenceTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/MoreStatisticsTest.cs b/pwiz_tools/Skyline/Test/MoreStatisticsTest.cs index eac98373088..8e882546c1b 100644 --- a/pwiz_tools/Skyline/Test/MoreStatisticsTest.cs +++ b/pwiz_tools/Skyline/Test/MoreStatisticsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/MultiLabel.sky b/pwiz_tools/Skyline/Test/MultiLabel.sky index f320e507572..d2cf8ca5f27 100644 --- a/pwiz_tools/Skyline/Test/MultiLabel.sky +++ b/pwiz_tools/Skyline/Test/MultiLabel.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Test/NormalizeProductIonTest.cs b/pwiz_tools/Skyline/Test/NormalizeProductIonTest.cs index a3f55eea560..67110158998 100644 --- a/pwiz_tools/Skyline/Test/NormalizeProductIonTest.cs +++ b/pwiz_tools/Skyline/Test/NormalizeProductIonTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/ObjectSizeTest.cs b/pwiz_tools/Skyline/Test/ObjectSizeTest.cs index 7f674d7e7d2..052787cd382 100644 --- a/pwiz_tools/Skyline/Test/ObjectSizeTest.cs +++ b/pwiz_tools/Skyline/Test/ObjectSizeTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/OnDemandFeatureCalculatorTest.cs b/pwiz_tools/Skyline/Test/OnDemandFeatureCalculatorTest.cs index 80e584e6a92..e9621d0f901 100644 --- a/pwiz_tools/Skyline/Test/OnDemandFeatureCalculatorTest.cs +++ b/pwiz_tools/Skyline/Test/OnDemandFeatureCalculatorTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/PasteTest.cs b/pwiz_tools/Skyline/Test/PasteTest.cs index d67d76bff5c..495ccb2df7e 100644 --- a/pwiz_tools/Skyline/Test/PasteTest.cs +++ b/pwiz_tools/Skyline/Test/PasteTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Alana Killeen , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/PcaTest.cs b/pwiz_tools/Skyline/Test/PcaTest.cs index eccaf2c89a2..a30117dbeed 100644 --- a/pwiz_tools/Skyline/Test/PcaTest.cs +++ b/pwiz_tools/Skyline/Test/PcaTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/PeakBoundaryTest.cs b/pwiz_tools/Skyline/Test/PeakBoundaryTest.cs index 9eb3eb0194b..7f419a0647b 100644 --- a/pwiz_tools/Skyline/Test/PeakBoundaryTest.cs +++ b/pwiz_tools/Skyline/Test/PeakBoundaryTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Dario Amodei , * Mallick Lab, Department of Radiology, Stanford * diff --git a/pwiz_tools/Skyline/Test/PeakShapeStatisticsTest.cs b/pwiz_tools/Skyline/Test/PeakShapeStatisticsTest.cs index c679637cd12..fb3a571f0d7 100644 --- a/pwiz_tools/Skyline/Test/PeakShapeStatisticsTest.cs +++ b/pwiz_tools/Skyline/Test/PeakShapeStatisticsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/PeptideTest.cs b/pwiz_tools/Skyline/Test/PeptideTest.cs index 6988cc59ee6..ce09760551e 100644 --- a/pwiz_tools/Skyline/Test/PeptideTest.cs +++ b/pwiz_tools/Skyline/Test/PeptideTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/PiecewiseLinearMapTest.cs b/pwiz_tools/Skyline/Test/PiecewiseLinearMapTest.cs index efbf679a3e3..095ac376930 100644 --- a/pwiz_tools/Skyline/Test/PiecewiseLinearMapTest.cs +++ b/pwiz_tools/Skyline/Test/PiecewiseLinearMapTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/ProgressStatusChangeSegmentsEndPercentageTest.cs b/pwiz_tools/Skyline/Test/ProgressStatusChangeSegmentsEndPercentageTest.cs index 2305c6441b0..1acfe484594 100644 --- a/pwiz_tools/Skyline/Test/ProgressStatusChangeSegmentsEndPercentageTest.cs +++ b/pwiz_tools/Skyline/Test/ProgressStatusChangeSegmentsEndPercentageTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: David Shteynberg , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/Properties/AssemblyInfo.cs b/pwiz_tools/Skyline/Test/Properties/AssemblyInfo.cs index 3b698c641c4..a017ada5214 100644 --- a/pwiz_tools/Skyline/Test/Properties/AssemblyInfo.cs +++ b/pwiz_tools/Skyline/Test/Properties/AssemblyInfo.cs @@ -1,4 +1,4 @@ -using System.Reflection; +using System.Reflection; using System.Runtime.InteropServices; // General Information about an assembly is controlled through the following diff --git a/pwiz_tools/Skyline/Test/ProteinAssociationTest.cs b/pwiz_tools/Skyline/Test/ProteinAssociationTest.cs index 7af565ac520..ecd08d9a1ea 100644 --- a/pwiz_tools/Skyline/Test/ProteinAssociationTest.cs +++ b/pwiz_tools/Skyline/Test/ProteinAssociationTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/ProtocolBuffers/LegacyProtocolBufferFormatsTest.cs b/pwiz_tools/Skyline/Test/ProtocolBuffers/LegacyProtocolBufferFormatsTest.cs index 33fdb29b783..c00fa01f1ad 100644 --- a/pwiz_tools/Skyline/Test/ProtocolBuffers/LegacyProtocolBufferFormatsTest.cs +++ b/pwiz_tools/Skyline/Test/ProtocolBuffers/LegacyProtocolBufferFormatsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/ProtocolBuffers/LegacySkylineDocumentProto.proto b/pwiz_tools/Skyline/Test/ProtocolBuffers/LegacySkylineDocumentProto.proto index b6d4688affb..70be3a3ca50 100644 --- a/pwiz_tools/Skyline/Test/ProtocolBuffers/LegacySkylineDocumentProto.proto +++ b/pwiz_tools/Skyline/Test/ProtocolBuffers/LegacySkylineDocumentProto.proto @@ -1,4 +1,4 @@ -syntax = "proto3"; +syntax = "proto3"; option csharp_namespace = "pwiz.SkylineTest.ProtocolBuffers.GeneratedCode"; option java_package = "org.labkey.targetedms.parser.proto"; message LegacySkylineDocumentProto { diff --git a/pwiz_tools/Skyline/Test/PublishDocAddSubfolderTest.cs b/pwiz_tools/Skyline/Test/PublishDocAddSubfolderTest.cs index f414307d810..591994ca077 100644 --- a/pwiz_tools/Skyline/Test/PublishDocAddSubfolderTest.cs +++ b/pwiz_tools/Skyline/Test/PublishDocAddSubfolderTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Vagisha Sharma , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/Quantification/CalibrationCurveFitterTest.cs b/pwiz_tools/Skyline/Test/Quantification/CalibrationCurveFitterTest.cs index b0499c55df1..87eaed774b9 100644 --- a/pwiz_tools/Skyline/Test/Quantification/CalibrationCurveFitterTest.cs +++ b/pwiz_tools/Skyline/Test/Quantification/CalibrationCurveFitterTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/Quantification/CalibrationCurveFitterTest.sky b/pwiz_tools/Skyline/Test/Quantification/CalibrationCurveFitterTest.sky index acea4f12dc9..4672cc5b3ce 100644 --- a/pwiz_tools/Skyline/Test/Quantification/CalibrationCurveFitterTest.sky +++ b/pwiz_tools/Skyline/Test/Quantification/CalibrationCurveFitterTest.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Test/Quantification/WeightedRegressionTest.cs b/pwiz_tools/Skyline/Test/Quantification/WeightedRegressionTest.cs index 30e192072b9..4d2dffd9f6c 100644 --- a/pwiz_tools/Skyline/Test/Quantification/WeightedRegressionTest.cs +++ b/pwiz_tools/Skyline/Test/Quantification/WeightedRegressionTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/RandomTest.cs b/pwiz_tools/Skyline/Test/RandomTest.cs index b875bf99b4a..653ec0c4f0b 100644 --- a/pwiz_tools/Skyline/Test/RandomTest.cs +++ b/pwiz_tools/Skyline/Test/RandomTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/ReferenceValueTest.cs b/pwiz_tools/Skyline/Test/ReferenceValueTest.cs index 32ab40e32e3..fab80a70605 100644 --- a/pwiz_tools/Skyline/Test/ReferenceValueTest.cs +++ b/pwiz_tools/Skyline/Test/ReferenceValueTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/Reporting/ColumnCaptionLocalizationTest.cs b/pwiz_tools/Skyline/Test/Reporting/ColumnCaptionLocalizationTest.cs index f60efd1cdc4..b56240af322 100644 --- a/pwiz_tools/Skyline/Test/Reporting/ColumnCaptionLocalizationTest.cs +++ b/pwiz_tools/Skyline/Test/Reporting/ColumnCaptionLocalizationTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/Reporting/DocumentViewTransformerTest.cs b/pwiz_tools/Skyline/Test/Reporting/DocumentViewTransformerTest.cs index 971c230b421..5f1ff39c6ed 100644 --- a/pwiz_tools/Skyline/Test/Reporting/DocumentViewTransformerTest.cs +++ b/pwiz_tools/Skyline/Test/Reporting/DocumentViewTransformerTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/Reporting/DsvWriterTest.cs b/pwiz_tools/Skyline/Test/Reporting/DsvWriterTest.cs index 0a1632cc7d9..c80843d3008 100644 --- a/pwiz_tools/Skyline/Test/Reporting/DsvWriterTest.cs +++ b/pwiz_tools/Skyline/Test/Reporting/DsvWriterTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/Reporting/DsvWriterTest.sky b/pwiz_tools/Skyline/Test/Reporting/DsvWriterTest.sky index 208f54888e3..f44c2617dde 100644 --- a/pwiz_tools/Skyline/Test/Reporting/DsvWriterTest.sky +++ b/pwiz_tools/Skyline/Test/Reporting/DsvWriterTest.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Test/Reporting/HeavyLabeledLeucine.sky b/pwiz_tools/Skyline/Test/Reporting/HeavyLabeledLeucine.sky index f750d2193ec..90e4221e810 100644 --- a/pwiz_tools/Skyline/Test/Reporting/HeavyLabeledLeucine.sky +++ b/pwiz_tools/Skyline/Test/Reporting/HeavyLabeledLeucine.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Test/Reporting/LiveReportPivotTest.cs b/pwiz_tools/Skyline/Test/Reporting/LiveReportPivotTest.cs index cb704ae07e7..3922ddce891 100644 --- a/pwiz_tools/Skyline/Test/Reporting/LiveReportPivotTest.cs +++ b/pwiz_tools/Skyline/Test/Reporting/LiveReportPivotTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/Reporting/LiveReportPivots.skyr b/pwiz_tools/Skyline/Test/Reporting/LiveReportPivots.skyr index 50d5da85c47..e96f18505c8 100644 --- a/pwiz_tools/Skyline/Test/Reporting/LiveReportPivots.skyr +++ b/pwiz_tools/Skyline/Test/Reporting/LiveReportPivots.skyr @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Test/Reporting/PersistedViewsTest.cs b/pwiz_tools/Skyline/Test/Reporting/PersistedViewsTest.cs index f7b7962e49f..167eac60568 100644 --- a/pwiz_tools/Skyline/Test/Reporting/PersistedViewsTest.cs +++ b/pwiz_tools/Skyline/Test/Reporting/PersistedViewsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/Reporting/ReportSpecConverterTest.cs b/pwiz_tools/Skyline/Test/Reporting/ReportSpecConverterTest.cs index 150302b6211..facb00395ef 100644 --- a/pwiz_tools/Skyline/Test/Reporting/ReportSpecConverterTest.cs +++ b/pwiz_tools/Skyline/Test/Reporting/ReportSpecConverterTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/Reporting/silac_1_to_4.sky b/pwiz_tools/Skyline/Test/Reporting/silac_1_to_4.sky index 49b22e2a1bf..03f4531cf9d 100644 --- a/pwiz_tools/Skyline/Test/Reporting/silac_1_to_4.sky +++ b/pwiz_tools/Skyline/Test/Reporting/silac_1_to_4.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Test/ScoreQValueMapTest.cs b/pwiz_tools/Skyline/Test/ScoreQValueMapTest.cs index aa8d75f6251..7cdbb39631c 100644 --- a/pwiz_tools/Skyline/Test/ScoreQValueMapTest.cs +++ b/pwiz_tools/Skyline/Test/ScoreQValueMapTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/SignedMzTest.cs b/pwiz_tools/Skyline/Test/SignedMzTest.cs index fe7709cbc0b..7db477dc205 100644 --- a/pwiz_tools/Skyline/Test/SignedMzTest.cs +++ b/pwiz_tools/Skyline/Test/SignedMzTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/SmallMoleculesMzOnlyTest.cs b/pwiz_tools/Skyline/Test/SmallMoleculesMzOnlyTest.cs index f6c3297015e..4dd14b26db4 100644 --- a/pwiz_tools/Skyline/Test/SmallMoleculesMzOnlyTest.cs +++ b/pwiz_tools/Skyline/Test/SmallMoleculesMzOnlyTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/SmallMoleculesMzOnly_3-7.sky b/pwiz_tools/Skyline/Test/SmallMoleculesMzOnly_3-7.sky index 15e2f3581f5..856ec2123b7 100644 --- a/pwiz_tools/Skyline/Test/SmallMoleculesMzOnly_3-7.sky +++ b/pwiz_tools/Skyline/Test/SmallMoleculesMzOnly_3-7.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Test/SpectrumClassFilterTest.cs b/pwiz_tools/Skyline/Test/SpectrumClassFilterTest.cs index 7905c89a8d5..99d7473ddcf 100644 --- a/pwiz_tools/Skyline/Test/SpectrumClassFilterTest.cs +++ b/pwiz_tools/Skyline/Test/SpectrumClassFilterTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/SrmSettingsNewTest.cs b/pwiz_tools/Skyline/Test/SrmSettingsNewTest.cs index 10d75d0aa27..62256ed1163 100644 --- a/pwiz_tools/Skyline/Test/SrmSettingsNewTest.cs +++ b/pwiz_tools/Skyline/Test/SrmSettingsNewTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/StringHelpersTest.cs b/pwiz_tools/Skyline/Test/StringHelpersTest.cs index da96f4c6c2e..a3a93684c56 100644 --- a/pwiz_tools/Skyline/Test/StringHelpersTest.cs +++ b/pwiz_tools/Skyline/Test/StringHelpersTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Shannon Joyner , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/StripePainterTest.cs b/pwiz_tools/Skyline/Test/StripePainterTest.cs index b7c5e21fb7e..6ebba1f6e18 100644 --- a/pwiz_tools/Skyline/Test/StripePainterTest.cs +++ b/pwiz_tools/Skyline/Test/StripePainterTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/Study7.sky b/pwiz_tools/Skyline/Test/Study7.sky index 3ffafc316c1..7f425e49794 100644 --- a/pwiz_tools/Skyline/Test/Study7.sky +++ b/pwiz_tools/Skyline/Test/Study7.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Test/Study7_0-7.sky b/pwiz_tools/Skyline/Test/Study7_0-7.sky index 62b2269f16d..b8787c0f153 100644 --- a/pwiz_tools/Skyline/Test/Study7_0-7.sky +++ b/pwiz_tools/Skyline/Test/Study7_0-7.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Test/SubstringFinderTest.cs b/pwiz_tools/Skyline/Test/SubstringFinderTest.cs index 0665e2112cf..a3663f74504 100644 --- a/pwiz_tools/Skyline/Test/SubstringFinderTest.cs +++ b/pwiz_tools/Skyline/Test/SubstringFinderTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/Test-imported_24-11-short_onlyUnimodMods.sky b/pwiz_tools/Skyline/Test/Test-imported_24-11-short_onlyUnimodMods.sky index 7adaba0a084..266fc048afc 100644 --- a/pwiz_tools/Skyline/Test/Test-imported_24-11-short_onlyUnimodMods.sky +++ b/pwiz_tools/Skyline/Test/Test-imported_24-11-short_onlyUnimodMods.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Test/Test.csproj b/pwiz_tools/Skyline/Test/Test.csproj index f2dc2b91d8e..d9332213c02 100644 --- a/pwiz_tools/Skyline/Test/Test.csproj +++ b/pwiz_tools/Skyline/Test/Test.csproj @@ -1,4 +1,4 @@ - + Debug diff --git a/pwiz_tools/Skyline/Test/TestSerializeIsolationScheme.cs b/pwiz_tools/Skyline/Test/TestSerializeIsolationScheme.cs index cd91556e7be..11275725bc3 100644 --- a/pwiz_tools/Skyline/Test/TestSerializeIsolationScheme.cs +++ b/pwiz_tools/Skyline/Test/TestSerializeIsolationScheme.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/TextUtilTest.cs b/pwiz_tools/Skyline/Test/TextUtilTest.cs index 40de1082c1c..6835eec4988 100644 --- a/pwiz_tools/Skyline/Test/TextUtilTest.cs +++ b/pwiz_tools/Skyline/Test/TextUtilTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/TimeIntervalsTest.cs b/pwiz_tools/Skyline/Test/TimeIntervalsTest.cs index f438a0fd0b9..4ef91387085 100644 --- a/pwiz_tools/Skyline/Test/TimeIntervalsTest.cs +++ b/pwiz_tools/Skyline/Test/TimeIntervalsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/ToolDescriptionTest.cs b/pwiz_tools/Skyline/Test/ToolDescriptionTest.cs index 04770f55a49..732d08ab932 100644 --- a/pwiz_tools/Skyline/Test/ToolDescriptionTest.cs +++ b/pwiz_tools/Skyline/Test/ToolDescriptionTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/TransitionSettings07Test.cs b/pwiz_tools/Skyline/Test/TransitionSettings07Test.cs index d689fce4a6f..74f1c6db490 100644 --- a/pwiz_tools/Skyline/Test/TransitionSettings07Test.cs +++ b/pwiz_tools/Skyline/Test/TransitionSettings07Test.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/TypeSafeEnumTest.cs b/pwiz_tools/Skyline/Test/TypeSafeEnumTest.cs index b96ce0f7fb1..cf0e3645331 100644 --- a/pwiz_tools/Skyline/Test/TypeSafeEnumTest.cs +++ b/pwiz_tools/Skyline/Test/TypeSafeEnumTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/TypedMassTest.cs b/pwiz_tools/Skyline/Test/TypedMassTest.cs index 526d12ca9fa..3714fb967c9 100644 --- a/pwiz_tools/Skyline/Test/TypedMassTest.cs +++ b/pwiz_tools/Skyline/Test/TypedMassTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/UniModHeavyList.xml b/pwiz_tools/Skyline/Test/UniModHeavyList.xml index cb975ad1eed..c467bcabe68 100644 --- a/pwiz_tools/Skyline/Test/UniModHeavyList.xml +++ b/pwiz_tools/Skyline/Test/UniModHeavyList.xml @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Test/UniModStaticList.xml b/pwiz_tools/Skyline/Test/UniModStaticList.xml index 2635d74e45c..7ef0fd500eb 100644 --- a/pwiz_tools/Skyline/Test/UniModStaticList.xml +++ b/pwiz_tools/Skyline/Test/UniModStaticList.xml @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Test/UniModTest.cs b/pwiz_tools/Skyline/Test/UniModTest.cs index 2b7fd63aaaa..f931c30cb90 100644 --- a/pwiz_tools/Skyline/Test/UniModTest.cs +++ b/pwiz_tools/Skyline/Test/UniModTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Alana Killeen , * MacCoss Lab, Department of Genome Sciences, UW * @@ -137,7 +137,8 @@ private static void WriteModListXml(string name, string tagName, IEnumerable, * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/UtilTest.cs b/pwiz_tools/Skyline/Test/UtilTest.cs index 942cd548911..e7662c92aa7 100644 --- a/pwiz_tools/Skyline/Test/UtilTest.cs +++ b/pwiz_tools/Skyline/Test/UtilTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/VariableModTest.cs b/pwiz_tools/Skyline/Test/VariableModTest.cs index d83b49e99cb..d14926f9876 100644 --- a/pwiz_tools/Skyline/Test/VariableModTest.cs +++ b/pwiz_tools/Skyline/Test/VariableModTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/WebEnabledFastaImporterTest.cs b/pwiz_tools/Skyline/Test/WebEnabledFastaImporterTest.cs index e90525cc712..00ec8695634 100644 --- a/pwiz_tools/Skyline/Test/WebEnabledFastaImporterTest.cs +++ b/pwiz_tools/Skyline/Test/WebEnabledFastaImporterTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/ZedGraphTest.cs b/pwiz_tools/Skyline/Test/ZedGraphTest.cs index d487f61ea50..b703789702a 100644 --- a/pwiz_tools/Skyline/Test/ZedGraphTest.cs +++ b/pwiz_tools/Skyline/Test/ZedGraphTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/Test/explicit-losses.sky b/pwiz_tools/Skyline/Test/explicit-losses.sky index 416d06ab78a..eabd316b201 100644 --- a/pwiz_tools/Skyline/Test/explicit-losses.sky +++ b/pwiz_tools/Skyline/Test/explicit-losses.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/Test/modmatch.sky b/pwiz_tools/Skyline/Test/modmatch.sky index 1d675e66c27..34cf6ac8e32 100644 --- a/pwiz_tools/Skyline/Test/modmatch.sky +++ b/pwiz_tools/Skyline/Test/modmatch.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestConnected/ArdiaAccountTest.cs b/pwiz_tools/Skyline/TestConnected/ArdiaAccountTest.cs index 553dec46e5c..fce84baba32 100644 --- a/pwiz_tools/Skyline/TestConnected/ArdiaAccountTest.cs +++ b/pwiz_tools/Skyline/TestConnected/ArdiaAccountTest.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2025 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Skyline/TestConnected/ArdiaFileUploadTest.cs b/pwiz_tools/Skyline/TestConnected/ArdiaFileUploadTest.cs index a389dd0a315..67e72aedff2 100644 --- a/pwiz_tools/Skyline/TestConnected/ArdiaFileUploadTest.cs +++ b/pwiz_tools/Skyline/TestConnected/ArdiaFileUploadTest.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2025 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Skyline/TestConnected/ArdiaFileUploadTest.data/Basic.sky b/pwiz_tools/Skyline/TestConnected/ArdiaFileUploadTest.data/Basic.sky index dbe4c92858f..33cb74c9b45 100644 --- a/pwiz_tools/Skyline/TestConnected/ArdiaFileUploadTest.data/Basic.sky +++ b/pwiz_tools/Skyline/TestConnected/ArdiaFileUploadTest.data/Basic.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestConnected/ArdiaFileUploadTest.data/Basic.sky.view b/pwiz_tools/Skyline/TestConnected/ArdiaFileUploadTest.data/Basic.sky.view index 778d733410f..159c886ee69 100644 --- a/pwiz_tools/Skyline/TestConnected/ArdiaFileUploadTest.data/Basic.sky.view +++ b/pwiz_tools/Skyline/TestConnected/ArdiaFileUploadTest.data/Basic.sky.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestConnected/ArdiaFileUploadTest.data/Basic.skyl b/pwiz_tools/Skyline/TestConnected/ArdiaFileUploadTest.data/Basic.skyl index 525d7ccea1e..3bddbc8b09c 100644 --- a/pwiz_tools/Skyline/TestConnected/ArdiaFileUploadTest.data/Basic.skyl +++ b/pwiz_tools/Skyline/TestConnected/ArdiaFileUploadTest.data/Basic.skyl @@ -1,4 +1,4 @@ - + 6gX1m6EHX/dRRrTe4ARjKSX/hUI= diff --git a/pwiz_tools/Skyline/TestConnected/ArdiaFileUploadTest.data/MOBIE Quant Oct 2024_2024-10-09_13-20-22/MOBIE Quant Oct 2024.sky b/pwiz_tools/Skyline/TestConnected/ArdiaFileUploadTest.data/MOBIE Quant Oct 2024_2024-10-09_13-20-22/MOBIE Quant Oct 2024.sky index e07a1aebc6f..740aef7f070 100644 --- a/pwiz_tools/Skyline/TestConnected/ArdiaFileUploadTest.data/MOBIE Quant Oct 2024_2024-10-09_13-20-22/MOBIE Quant Oct 2024.sky +++ b/pwiz_tools/Skyline/TestConnected/ArdiaFileUploadTest.data/MOBIE Quant Oct 2024_2024-10-09_13-20-22/MOBIE Quant Oct 2024.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestConnected/ArdiaFileUploadTest.data/MOBIE Quant Oct 2024_2024-10-09_13-20-22/MOBIE Quant Oct 2024.skyl b/pwiz_tools/Skyline/TestConnected/ArdiaFileUploadTest.data/MOBIE Quant Oct 2024_2024-10-09_13-20-22/MOBIE Quant Oct 2024.skyl index 0273d3bc5ca..8ae718f4d71 100644 --- a/pwiz_tools/Skyline/TestConnected/ArdiaFileUploadTest.data/MOBIE Quant Oct 2024_2024-10-09_13-20-22/MOBIE Quant Oct 2024.skyl +++ b/pwiz_tools/Skyline/TestConnected/ArdiaFileUploadTest.data/MOBIE Quant Oct 2024_2024-10-09_13-20-22/MOBIE Quant Oct 2024.skyl @@ -1,4 +1,4 @@ - + aX9LgOY7RT+21dQ66vI0sjYl9/k= 7qZsSAlp2Kw4k2Ty6PVqtKszepY= diff --git a/pwiz_tools/Skyline/TestConnected/ArdiaFunctionalTest.data/caffeicquinic acid.sky b/pwiz_tools/Skyline/TestConnected/ArdiaFunctionalTest.data/caffeicquinic acid.sky index fcfdcd07305..e860ad67a6f 100644 --- a/pwiz_tools/Skyline/TestConnected/ArdiaFunctionalTest.data/caffeicquinic acid.sky +++ b/pwiz_tools/Skyline/TestConnected/ArdiaFunctionalTest.data/caffeicquinic acid.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestConnected/ArdiaImportResultsTest.cs b/pwiz_tools/Skyline/TestConnected/ArdiaImportResultsTest.cs index 3c762cea4fa..fabc514e07c 100644 --- a/pwiz_tools/Skyline/TestConnected/ArdiaImportResultsTest.cs +++ b/pwiz_tools/Skyline/TestConnected/ArdiaImportResultsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2024 University of Washington - Seattle, WA diff --git a/pwiz_tools/Skyline/TestConnected/KoinaBuildLibraryFromCsvTest.cs b/pwiz_tools/Skyline/TestConnected/KoinaBuildLibraryFromCsvTest.cs index d89f24299b3..dbe79b033d1 100644 --- a/pwiz_tools/Skyline/TestConnected/KoinaBuildLibraryFromCsvTest.cs +++ b/pwiz_tools/Skyline/TestConnected/KoinaBuildLibraryFromCsvTest.cs @@ -1,4 +1,4 @@ -using System; +using System; using Microsoft.VisualStudio.TestTools.UnitTesting; using System.Collections.Generic; using System.IO; diff --git a/pwiz_tools/Skyline/TestConnected/KoinaBuildLibraryTest.cs b/pwiz_tools/Skyline/TestConnected/KoinaBuildLibraryTest.cs index 032dd441222..84138ad9561 100644 --- a/pwiz_tools/Skyline/TestConnected/KoinaBuildLibraryTest.cs +++ b/pwiz_tools/Skyline/TestConnected/KoinaBuildLibraryTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestConnected/KoinaConnectionTest.cs b/pwiz_tools/Skyline/TestConnected/KoinaConnectionTest.cs index 24e2208b52e..a30cb8f7cff 100644 --- a/pwiz_tools/Skyline/TestConnected/KoinaConnectionTest.cs +++ b/pwiz_tools/Skyline/TestConnected/KoinaConnectionTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestConnected/PanoramaClientDownloadTest.cs b/pwiz_tools/Skyline/TestConnected/PanoramaClientDownloadTest.cs index f93eb585608..acb967234ea 100644 --- a/pwiz_tools/Skyline/TestConnected/PanoramaClientDownloadTest.cs +++ b/pwiz_tools/Skyline/TestConnected/PanoramaClientDownloadTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Sophie Pallanck , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestConnected/RemoteApiFunctionalTest.data/SmallMolOptimization.sky b/pwiz_tools/Skyline/TestConnected/RemoteApiFunctionalTest.data/SmallMolOptimization.sky index 558fc1108bd..9af075a44a6 100644 --- a/pwiz_tools/Skyline/TestConnected/RemoteApiFunctionalTest.data/SmallMolOptimization.sky +++ b/pwiz_tools/Skyline/TestConnected/RemoteApiFunctionalTest.data/SmallMolOptimization.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestConnected/Results/RemoteApi/RemoteApiTest.cs b/pwiz_tools/Skyline/TestConnected/Results/RemoteApi/RemoteApiTest.cs index 2cd166fa8ce..46bdd6524fc 100644 --- a/pwiz_tools/Skyline/TestConnected/Results/RemoteApi/RemoteApiTest.cs +++ b/pwiz_tools/Skyline/TestConnected/Results/RemoteApi/RemoteApiTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestConnected/TestConnected.csproj b/pwiz_tools/Skyline/TestConnected/TestConnected.csproj index 464024b58ad..bfc8ba77989 100644 --- a/pwiz_tools/Skyline/TestConnected/TestConnected.csproj +++ b/pwiz_tools/Skyline/TestConnected/TestConnected.csproj @@ -1,4 +1,4 @@ - + Debug diff --git a/pwiz_tools/Skyline/TestConnected/UnifiFunctionalTest.cs b/pwiz_tools/Skyline/TestConnected/UnifiFunctionalTest.cs index 9be1478f06a..588e736fae6 100644 --- a/pwiz_tools/Skyline/TestConnected/UnifiFunctionalTest.cs +++ b/pwiz_tools/Skyline/TestConnected/UnifiFunctionalTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestConnected/app.config b/pwiz_tools/Skyline/TestConnected/app.config index f67f7a154ea..476eedc2b81 100644 --- a/pwiz_tools/Skyline/TestConnected/app.config +++ b/pwiz_tools/Skyline/TestConnected/app.config @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestData/CommandLineEiTest.cs b/pwiz_tools/Skyline/TestData/CommandLineEiTest.cs index 959132da26f..e9107832942 100644 --- a/pwiz_tools/Skyline/TestData/CommandLineEiTest.cs +++ b/pwiz_tools/Skyline/TestData/CommandLineEiTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestData/CommandLineImportTest.cs b/pwiz_tools/Skyline/TestData/CommandLineImportTest.cs index aa3d38fab89..85c3ee662a0 100644 --- a/pwiz_tools/Skyline/TestData/CommandLineImportTest.cs +++ b/pwiz_tools/Skyline/TestData/CommandLineImportTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestData/CommandLineMetadataRuleTest.cs b/pwiz_tools/Skyline/TestData/CommandLineMetadataRuleTest.cs index e60e12bfb9e..556f79d5291 100644 --- a/pwiz_tools/Skyline/TestData/CommandLineMetadataRuleTest.cs +++ b/pwiz_tools/Skyline/TestData/CommandLineMetadataRuleTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestData/CommandLineNoJoinTest.cs b/pwiz_tools/Skyline/TestData/CommandLineNoJoinTest.cs index 74f85697f94..036d8319d91 100644 --- a/pwiz_tools/Skyline/TestData/CommandLineNoJoinTest.cs +++ b/pwiz_tools/Skyline/TestData/CommandLineNoJoinTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestData/CommandLineTest.cs b/pwiz_tools/Skyline/TestData/CommandLineTest.cs index 35c1efd0d3e..8ecece939c6 100644 --- a/pwiz_tools/Skyline/TestData/CommandLineTest.cs +++ b/pwiz_tools/Skyline/TestData/CommandLineTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: John Chilton , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestData/CommandLineWiffTest.cs b/pwiz_tools/Skyline/TestData/CommandLineWiffTest.cs index 273fbce7b3b..50443f4c3d5 100644 --- a/pwiz_tools/Skyline/TestData/CommandLineWiffTest.cs +++ b/pwiz_tools/Skyline/TestData/CommandLineWiffTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestData/ConsoleAddAnnotationsTest.cs b/pwiz_tools/Skyline/TestData/ConsoleAddAnnotationsTest.cs index 81321e5b548..383383bf449 100644 --- a/pwiz_tools/Skyline/TestData/ConsoleAddAnnotationsTest.cs +++ b/pwiz_tools/Skyline/TestData/ConsoleAddAnnotationsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Henry Sanford , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestData/ConsoleVerboseExceptionsTest.cs b/pwiz_tools/Skyline/TestData/ConsoleVerboseExceptionsTest.cs index 180f742bd70..d2d72f300e9 100644 --- a/pwiz_tools/Skyline/TestData/ConsoleVerboseExceptionsTest.cs +++ b/pwiz_tools/Skyline/TestData/ConsoleVerboseExceptionsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Henry Sanford , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestData/DataFileMemoryLeakTest.cs b/pwiz_tools/Skyline/TestData/DataFileMemoryLeakTest.cs index 39b545fa6aa..24e7f6ebafb 100644 --- a/pwiz_tools/Skyline/TestData/DataFileMemoryLeakTest.cs +++ b/pwiz_tools/Skyline/TestData/DataFileMemoryLeakTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestData/ExportMethodShimadzuTest.cs b/pwiz_tools/Skyline/TestData/ExportMethodShimadzuTest.cs index 928165af81d..a14c84c6661 100644 --- a/pwiz_tools/Skyline/TestData/ExportMethodShimadzuTest.cs +++ b/pwiz_tools/Skyline/TestData/ExportMethodShimadzuTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestData/FullScanAcquisitionMethodTest.cs b/pwiz_tools/Skyline/TestData/FullScanAcquisitionMethodTest.cs index 7dfb7279335..557e684bbac 100644 --- a/pwiz_tools/Skyline/TestData/FullScanAcquisitionMethodTest.cs +++ b/pwiz_tools/Skyline/TestData/FullScanAcquisitionMethodTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestData/InstrumentInfoUtilTest.cs b/pwiz_tools/Skyline/TestData/InstrumentInfoUtilTest.cs index a5ab7b1084a..26dc2ad54ab 100644 --- a/pwiz_tools/Skyline/TestData/InstrumentInfoUtilTest.cs +++ b/pwiz_tools/Skyline/TestData/InstrumentInfoUtilTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Vagisha Sharma , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestData/LocalizedResourcesTest.cs b/pwiz_tools/Skyline/TestData/LocalizedResourcesTest.cs index 4a3013aeeef..ff08be368c3 100644 --- a/pwiz_tools/Skyline/TestData/LocalizedResourcesTest.cs +++ b/pwiz_tools/Skyline/TestData/LocalizedResourcesTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestData/OptimizationSpacingTest.cs b/pwiz_tools/Skyline/TestData/OptimizationSpacingTest.cs index ae811c48b89..71c7b5185ab 100644 --- a/pwiz_tools/Skyline/TestData/OptimizationSpacingTest.cs +++ b/pwiz_tools/Skyline/TestData/OptimizationSpacingTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestData/Properties/AssemblyInfo.cs b/pwiz_tools/Skyline/TestData/Properties/AssemblyInfo.cs index cf286c4b457..28aa7b18567 100644 --- a/pwiz_tools/Skyline/TestData/Properties/AssemblyInfo.cs +++ b/pwiz_tools/Skyline/TestData/Properties/AssemblyInfo.cs @@ -1,4 +1,4 @@ -using System.Reflection; +using System.Reflection; using System.Runtime.InteropServices; // General Information about an assembly is controlled through the following diff --git a/pwiz_tools/Skyline/TestData/PwizFileInfoTest.cs b/pwiz_tools/Skyline/TestData/PwizFileInfoTest.cs index 8c910665ecf..0509d04d9ee 100644 --- a/pwiz_tools/Skyline/TestData/PwizFileInfoTest.cs +++ b/pwiz_tools/Skyline/TestData/PwizFileInfoTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Vagisha Sharma , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestData/ResourcesTest.cs b/pwiz_tools/Skyline/TestData/ResourcesTest.cs index 5ba38faa4c8..fe9a48d20d9 100644 --- a/pwiz_tools/Skyline/TestData/ResourcesTest.cs +++ b/pwiz_tools/Skyline/TestData/ResourcesTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestData/Results/AsymDiaTest.cs b/pwiz_tools/Skyline/TestData/Results/AsymDiaTest.cs index 561742c4307..0b8872ae1ba 100644 --- a/pwiz_tools/Skyline/TestData/Results/AsymDiaTest.cs +++ b/pwiz_tools/Skyline/TestData/Results/AsymDiaTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestData/Results/BetterTransTest.cs b/pwiz_tools/Skyline/TestData/Results/BetterTransTest.cs index d2c746a870c..83a77e1c783 100644 --- a/pwiz_tools/Skyline/TestData/Results/BetterTransTest.cs +++ b/pwiz_tools/Skyline/TestData/Results/BetterTransTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestData/Results/ChromCacheMinimizerTest.cs b/pwiz_tools/Skyline/TestData/Results/ChromCacheMinimizerTest.cs index c3b2d7d386d..b8786d15b3e 100644 --- a/pwiz_tools/Skyline/TestData/Results/ChromCacheMinimizerTest.cs +++ b/pwiz_tools/Skyline/TestData/Results/ChromCacheMinimizerTest.cs @@ -229,7 +229,7 @@ private static ResultsTestDocumentContainer MinimizeCacheFile(SrmDocument docume fsScans.FileStream, fsPeaks.FileStream, fsScores.FileStream); fs.Commit(); } - using (var writer = new XmlTextWriter(skyFilePath, Encoding.UTF8)) + using (var writer = new XmlTextWriter(skyFilePath, new UTF8Encoding(false))) // UTF-8 without BOM { writer.Formatting = Formatting.Indented; var ser = new XmlSerializer(typeof (SrmDocument)); diff --git a/pwiz_tools/Skyline/TestData/Results/FullScanTest.cs b/pwiz_tools/Skyline/TestData/Results/FullScanTest.cs index bcfb1b2988e..ac009cfe002 100644 --- a/pwiz_tools/Skyline/TestData/Results/FullScanTest.cs +++ b/pwiz_tools/Skyline/TestData/Results/FullScanTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestData/Results/HeavyVariable.sky b/pwiz_tools/Skyline/TestData/Results/HeavyVariable.sky index a801af4067f..7cdfa645e15 100644 --- a/pwiz_tools/Skyline/TestData/Results/HeavyVariable.sky +++ b/pwiz_tools/Skyline/TestData/Results/HeavyVariable.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestData/Results/ImportSimTest.cs b/pwiz_tools/Skyline/TestData/Results/ImportSimTest.cs index a3c2b13b88e..ccbfe12cf1a 100644 --- a/pwiz_tools/Skyline/TestData/Results/ImportSimTest.cs +++ b/pwiz_tools/Skyline/TestData/Results/ImportSimTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestData/Results/MsxTest.cs b/pwiz_tools/Skyline/TestData/Results/MsxTest.cs index 555cf7f07f3..2f515ce7679 100644 --- a/pwiz_tools/Skyline/TestData/Results/MsxTest.cs +++ b/pwiz_tools/Skyline/TestData/Results/MsxTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Jarrett Egertson , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestData/Results/MultiLabel.sky b/pwiz_tools/Skyline/TestData/Results/MultiLabel.sky index bd883425de4..f057cd63392 100644 --- a/pwiz_tools/Skyline/TestData/Results/MultiLabel.sky +++ b/pwiz_tools/Skyline/TestData/Results/MultiLabel.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestData/Results/MultiLabelRatioTest.cs b/pwiz_tools/Skyline/TestData/Results/MultiLabelRatioTest.cs index 7e6aa10370a..9373a5eacf3 100644 --- a/pwiz_tools/Skyline/TestData/Results/MultiLabelRatioTest.cs +++ b/pwiz_tools/Skyline/TestData/Results/MultiLabelRatioTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestData/Results/MultiLabelWithResults.sky b/pwiz_tools/Skyline/TestData/Results/MultiLabelWithResults.sky index e203ef8827d..31978b26727 100644 --- a/pwiz_tools/Skyline/TestData/Results/MultiLabelWithResults.sky +++ b/pwiz_tools/Skyline/TestData/Results/MultiLabelWithResults.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestData/Results/NumericsLsSolverTest.cs b/pwiz_tools/Skyline/TestData/Results/NumericsLsSolverTest.cs index 45e0c73ac6d..657467fdb0e 100644 --- a/pwiz_tools/Skyline/TestData/Results/NumericsLsSolverTest.cs +++ b/pwiz_tools/Skyline/TestData/Results/NumericsLsSolverTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Jarrett Egertson , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestData/Results/PeptideQuantifierTest.cs b/pwiz_tools/Skyline/TestData/Results/PeptideQuantifierTest.cs index 7f5f1666cb6..61d1eac1788 100644 --- a/pwiz_tools/Skyline/TestData/Results/PeptideQuantifierTest.cs +++ b/pwiz_tools/Skyline/TestData/Results/PeptideQuantifierTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestData/Results/PeptideQuantifierTest.sky b/pwiz_tools/Skyline/TestData/Results/PeptideQuantifierTest.sky index ad079344265..732847a07a3 100644 --- a/pwiz_tools/Skyline/TestData/Results/PeptideQuantifierTest.sky +++ b/pwiz_tools/Skyline/TestData/Results/PeptideQuantifierTest.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestData/Results/RestultNameMapTest.cs b/pwiz_tools/Skyline/TestData/Results/RestultNameMapTest.cs index 2c4b32e6ded..3379bf443b2 100644 --- a/pwiz_tools/Skyline/TestData/Results/RestultNameMapTest.cs +++ b/pwiz_tools/Skyline/TestData/Results/RestultNameMapTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestData/Results/ResultFileMetaDataTest.cs b/pwiz_tools/Skyline/TestData/Results/ResultFileMetaDataTest.cs index ac099468a46..44868eb16fc 100644 --- a/pwiz_tools/Skyline/TestData/Results/ResultFileMetaDataTest.cs +++ b/pwiz_tools/Skyline/TestData/Results/ResultFileMetaDataTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestData/Results/ResultsUtilTest.cs b/pwiz_tools/Skyline/TestData/Results/ResultsUtilTest.cs index bb18333f15d..182869b7a1c 100644 --- a/pwiz_tools/Skyline/TestData/Results/ResultsUtilTest.cs +++ b/pwiz_tools/Skyline/TestData/Results/ResultsUtilTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestData/Results/StructSerializerTest.cs b/pwiz_tools/Skyline/TestData/Results/StructSerializerTest.cs index 72e7f64750e..26855fcccfd 100644 --- a/pwiz_tools/Skyline/TestData/Results/StructSerializerTest.cs +++ b/pwiz_tools/Skyline/TestData/Results/StructSerializerTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestData/Results/StructSizeTest.cs b/pwiz_tools/Skyline/TestData/Results/StructSizeTest.cs index 47922944513..0e3843cbc19 100644 --- a/pwiz_tools/Skyline/TestData/Results/StructSizeTest.cs +++ b/pwiz_tools/Skyline/TestData/Results/StructSizeTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestData/Results/TimeIntensitiesTest.cs b/pwiz_tools/Skyline/TestData/Results/TimeIntensitiesTest.cs index 6c2ffaed62d..1b701942766 100644 --- a/pwiz_tools/Skyline/TestData/Results/TimeIntensitiesTest.cs +++ b/pwiz_tools/Skyline/TestData/Results/TimeIntensitiesTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestData/TestData.csproj b/pwiz_tools/Skyline/TestData/TestData.csproj index b384113c915..35a15140df9 100644 --- a/pwiz_tools/Skyline/TestData/TestData.csproj +++ b/pwiz_tools/Skyline/TestData/TestData.csproj @@ -1,4 +1,4 @@ - + Debug diff --git a/pwiz_tools/Skyline/TestData/XmlValidationTest.cs b/pwiz_tools/Skyline/TestData/XmlValidationTest.cs index 4017b537d67..a380ba6be6a 100644 --- a/pwiz_tools/Skyline/TestData/XmlValidationTest.cs +++ b/pwiz_tools/Skyline/TestData/XmlValidationTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Vagisha Sharma , * MacCoss Lab, Department of Genome Sciences, UW * @@ -292,7 +292,7 @@ private static void CheckModAttributes(XmlNode mod, string name, string index, s private static void WriteDocument(SrmDocument doc, string docPath) { - using (var writer = new XmlTextWriter(docPath, Encoding.UTF8)) + using (var writer = new XmlTextWriter(docPath, new UTF8Encoding(false))) // UTF-8 without BOM { writer.Formatting = Formatting.Indented; XmlSerializer ser = new XmlSerializer(typeof(SrmDocument)); diff --git a/pwiz_tools/Skyline/TestFunctional/AccessServerTest.cs b/pwiz_tools/Skyline/TestFunctional/AccessServerTest.cs index 95574e8747a..eb45f85255c 100644 --- a/pwiz_tools/Skyline/TestFunctional/AccessServerTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/AccessServerTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Shannon Joyner , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/AddAllPeptidesWithModificationsTest.cs b/pwiz_tools/Skyline/TestFunctional/AddAllPeptidesWithModificationsTest.cs index 90dd52034e0..1c3e12b3d5e 100644 --- a/pwiz_tools/Skyline/TestFunctional/AddAllPeptidesWithModificationsTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/AddAllPeptidesWithModificationsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/AddIrtStandardsTest.cs b/pwiz_tools/Skyline/TestFunctional/AddIrtStandardsTest.cs index aee33f26947..aeeeede7259 100644 --- a/pwiz_tools/Skyline/TestFunctional/AddIrtStandardsTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/AddIrtStandardsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/AddLibraryTest.cs b/pwiz_tools/Skyline/TestFunctional/AddLibraryTest.cs index 8dba15dde24..7b65da981c0 100644 --- a/pwiz_tools/Skyline/TestFunctional/AddLibraryTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/AddLibraryTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/AddMixedLibraryTest.cs b/pwiz_tools/Skyline/TestFunctional/AddMixedLibraryTest.cs index 3569fed6532..27911bc7af2 100644 --- a/pwiz_tools/Skyline/TestFunctional/AddMixedLibraryTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/AddMixedLibraryTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/AgilentCeOptimizationTest.cs b/pwiz_tools/Skyline/TestFunctional/AgilentCeOptimizationTest.cs index bb9068224c1..bdff967bcdc 100644 --- a/pwiz_tools/Skyline/TestFunctional/AgilentCeOptimizationTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/AgilentCeOptimizationTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/AlertDlgTest.cs b/pwiz_tools/Skyline/TestFunctional/AlertDlgTest.cs index a726befaa5c..2109bfcbc50 100644 --- a/pwiz_tools/Skyline/TestFunctional/AlertDlgTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/AlertDlgTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/AlignedIdTimesTest.cs b/pwiz_tools/Skyline/TestFunctional/AlignedIdTimesTest.cs index 37a3077fd21..f494d292197 100644 --- a/pwiz_tools/Skyline/TestFunctional/AlignedIdTimesTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/AlignedIdTimesTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/AlphabeticalReportEditorTest.cs b/pwiz_tools/Skyline/TestFunctional/AlphabeticalReportEditorTest.cs index 864caa5a1be..53bae95c08d 100644 --- a/pwiz_tools/Skyline/TestFunctional/AlphabeticalReportEditorTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/AlphabeticalReportEditorTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ApplyPeakToAllTest.cs b/pwiz_tools/Skyline/TestFunctional/ApplyPeakToAllTest.cs index d6fdcb18127..69250aa5e07 100644 --- a/pwiz_tools/Skyline/TestFunctional/ApplyPeakToAllTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ApplyPeakToAllTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/AreaCVHistogramTest.cs b/pwiz_tools/Skyline/TestFunctional/AreaCVHistogramTest.cs index 4c3fff030fd..5ad45509d39 100644 --- a/pwiz_tools/Skyline/TestFunctional/AreaCVHistogramTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/AreaCVHistogramTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tobias Rohde , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/AreaNormalizeOptionTest.cs b/pwiz_tools/Skyline/TestFunctional/AreaNormalizeOptionTest.cs index 1b89a88098e..6afc1de986b 100644 --- a/pwiz_tools/Skyline/TestFunctional/AreaNormalizeOptionTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/AreaNormalizeOptionTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ArrangeGraphsTest.cs b/pwiz_tools/Skyline/TestFunctional/ArrangeGraphsTest.cs index 7462dcebe4c..0badb78e8f5 100644 --- a/pwiz_tools/Skyline/TestFunctional/ArrangeGraphsTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ArrangeGraphsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Yuval Boss , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/AssayLibraryImportTest.cs b/pwiz_tools/Skyline/TestFunctional/AssayLibraryImportTest.cs index eb6321bb572..ee7f8dd5bef 100644 --- a/pwiz_tools/Skyline/TestFunctional/AssayLibraryImportTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/AssayLibraryImportTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Dario Amodei , * Mallick Lab, Department of Radiology, Stanford * diff --git a/pwiz_tools/Skyline/TestFunctional/AssociateProteinVariantTest.cs b/pwiz_tools/Skyline/TestFunctional/AssociateProteinVariantTest.cs index 7f7dd0fb146..a90ad0f8f00 100644 --- a/pwiz_tools/Skyline/TestFunctional/AssociateProteinVariantTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/AssociateProteinVariantTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/AssociateProteinsDlgTest.cs b/pwiz_tools/Skyline/TestFunctional/AssociateProteinsDlgTest.cs index 77bf43d3343..289d70f6ef6 100644 --- a/pwiz_tools/Skyline/TestFunctional/AssociateProteinsDlgTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/AssociateProteinsDlgTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Yuval Boss , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/AssociateProteinsParsimonySettingsTest.cs b/pwiz_tools/Skyline/TestFunctional/AssociateProteinsParsimonySettingsTest.cs index e81d696f467..caa4da110f5 100644 --- a/pwiz_tools/Skyline/TestFunctional/AssociateProteinsParsimonySettingsTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/AssociateProteinsParsimonySettingsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/AssociateProteinsWhileLoadingTest.cs b/pwiz_tools/Skyline/TestFunctional/AssociateProteinsWhileLoadingTest.cs index e42b3f7ddf4..791e942b500 100644 --- a/pwiz_tools/Skyline/TestFunctional/AssociateProteinsWhileLoadingTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/AssociateProteinsWhileLoadingTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/AuditLogSavingTest.cs b/pwiz_tools/Skyline/TestFunctional/AuditLogSavingTest.cs index 84acec18e7d..90858808730 100644 --- a/pwiz_tools/Skyline/TestFunctional/AuditLogSavingTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/AuditLogSavingTest.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.IO; using System.Security.Cryptography; using System.Text; diff --git a/pwiz_tools/Skyline/TestFunctional/AuditLogTest.cs b/pwiz_tools/Skyline/TestFunctional/AuditLogTest.cs index 7f04ca3f4f4..8bee84ae9ee 100644 --- a/pwiz_tools/Skyline/TestFunctional/AuditLogTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/AuditLogTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tobias Rohde , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/AuditLogValidationTest.cs b/pwiz_tools/Skyline/TestFunctional/AuditLogValidationTest.cs index 45ab29e6e75..9944ea99e58 100644 --- a/pwiz_tools/Skyline/TestFunctional/AuditLogValidationTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/AuditLogValidationTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Rita Chupalov , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/AutoSelectPeptidesTest.cs b/pwiz_tools/Skyline/TestFunctional/AutoSelectPeptidesTest.cs index 8704248866e..b6c552cbf1e 100644 --- a/pwiz_tools/Skyline/TestFunctional/AutoSelectPeptidesTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/AutoSelectPeptidesTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/AutoSelectTest.cs b/pwiz_tools/Skyline/TestFunctional/AutoSelectTest.cs index ce42bb45b6e..74f998d14e5 100644 --- a/pwiz_tools/Skyline/TestFunctional/AutoSelectTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/AutoSelectTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/AutoTrainModelTest.cs b/pwiz_tools/Skyline/TestFunctional/AutoTrainModelTest.cs index 144ff229f9a..0597e489d94 100644 --- a/pwiz_tools/Skyline/TestFunctional/AutoTrainModelTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/AutoTrainModelTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/AutoZoomTest.cs b/pwiz_tools/Skyline/TestFunctional/AutoZoomTest.cs index 293f353aaf9..5548f09ed4f 100644 --- a/pwiz_tools/Skyline/TestFunctional/AutoZoomTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/AutoZoomTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/BackgroundEventThreadsTest.cs b/pwiz_tools/Skyline/TestFunctional/BackgroundEventThreadsTest.cs index 59eb6ff7704..172a05a1af1 100644 --- a/pwiz_tools/Skyline/TestFunctional/BackgroundEventThreadsTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/BackgroundEventThreadsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/BatchCalibrationGroupComparisonTest.cs b/pwiz_tools/Skyline/TestFunctional/BatchCalibrationGroupComparisonTest.cs index 3edaf48ad5e..a8387e7cd9a 100644 --- a/pwiz_tools/Skyline/TestFunctional/BatchCalibrationGroupComparisonTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/BatchCalibrationGroupComparisonTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/BatchCalibrationTest.cs b/pwiz_tools/Skyline/TestFunctional/BatchCalibrationTest.cs index f339dee2519..153268b5a48 100644 --- a/pwiz_tools/Skyline/TestFunctional/BatchCalibrationTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/BatchCalibrationTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/BlibMoleculeListsTest.cs b/pwiz_tools/Skyline/TestFunctional/BlibMoleculeListsTest.cs index bc0382c06ea..f7a5a50a8c5 100644 --- a/pwiz_tools/Skyline/TestFunctional/BlibMoleculeListsTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/BlibMoleculeListsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/CalculateIsolationWindowsTest.cs b/pwiz_tools/Skyline/TestFunctional/CalculateIsolationWindowsTest.cs index 36fe270c4ad..956e443fd55 100644 --- a/pwiz_tools/Skyline/TestFunctional/CalculateIsolationWindowsTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/CalculateIsolationWindowsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/CalibrationScenariosTest.cs b/pwiz_tools/Skyline/TestFunctional/CalibrationScenariosTest.cs index 0c2d7cfaa7a..60e1919b987 100644 --- a/pwiz_tools/Skyline/TestFunctional/CalibrationScenariosTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/CalibrationScenariosTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/CalibrationTest.cs b/pwiz_tools/Skyline/TestFunctional/CalibrationTest.cs index cbd59bc6d50..a4da70cc4b0 100644 --- a/pwiz_tools/Skyline/TestFunctional/CalibrationTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/CalibrationTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/CancelExportReportTest.cs b/pwiz_tools/Skyline/TestFunctional/CancelExportReportTest.cs index 4b5dbf2dfca..eb89d48ddea 100644 --- a/pwiz_tools/Skyline/TestFunctional/CancelExportReportTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/CancelExportReportTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/CandidatePeakTest.cs b/pwiz_tools/Skyline/TestFunctional/CandidatePeakTest.cs index 65b7840e018..88f3615ccf5 100644 --- a/pwiz_tools/Skyline/TestFunctional/CandidatePeakTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/CandidatePeakTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/CantReadSkydTest.cs b/pwiz_tools/Skyline/TestFunctional/CantReadSkydTest.cs index 9b02e1d27a8..dbef8c7464e 100644 --- a/pwiz_tools/Skyline/TestFunctional/CantReadSkydTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/CantReadSkydTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ChangeDocumentGuidTest.cs b/pwiz_tools/Skyline/TestFunctional/ChangeDocumentGuidTest.cs index 1ddd2dbd2f3..e571e5c31f5 100644 --- a/pwiz_tools/Skyline/TestFunctional/ChangeDocumentGuidTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ChangeDocumentGuidTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ChargedLossesLibraryTest.cs b/pwiz_tools/Skyline/TestFunctional/ChargedLossesLibraryTest.cs index 96a54c09759..db4e8dcdf24 100644 --- a/pwiz_tools/Skyline/TestFunctional/ChargedLossesLibraryTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ChargedLossesLibraryTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ChargedLossesTest.cs b/pwiz_tools/Skyline/TestFunctional/ChargedLossesTest.cs index 65459ded909..7f328127642 100644 --- a/pwiz_tools/Skyline/TestFunctional/ChargedLossesTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ChargedLossesTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ChromDataSetMatchingTest.cs b/pwiz_tools/Skyline/TestFunctional/ChromDataSetMatchingTest.cs index e026f8e109c..c239c68cdda 100644 --- a/pwiz_tools/Skyline/TestFunctional/ChromDataSetMatchingTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ChromDataSetMatchingTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ChromGraphTransformTest.cs b/pwiz_tools/Skyline/TestFunctional/ChromGraphTransformTest.cs index 532f75ae2f4..a1e5c54a383 100644 --- a/pwiz_tools/Skyline/TestFunctional/ChromGraphTransformTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ChromGraphTransformTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ChromUITest.cs b/pwiz_tools/Skyline/TestFunctional/ChromUITest.cs index a0dec36802a..7e039632080 100644 --- a/pwiz_tools/Skyline/TestFunctional/ChromUITest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ChromUITest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Yuval Boss , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ChromatogramExtractionRangeTest.cs b/pwiz_tools/Skyline/TestFunctional/ChromatogramExtractionRangeTest.cs index 95bd2d54d23..38474bfa6a3 100644 --- a/pwiz_tools/Skyline/TestFunctional/ChromatogramExtractionRangeTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ChromatogramExtractionRangeTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ClearAllSettingsTest.cs b/pwiz_tools/Skyline/TestFunctional/ClearAllSettingsTest.cs index 7bb5a1584ef..8faebf80a0c 100644 --- a/pwiz_tools/Skyline/TestFunctional/ClearAllSettingsTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ClearAllSettingsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/CleavableCrosslinkTest.cs b/pwiz_tools/Skyline/TestFunctional/CleavableCrosslinkTest.cs index e6cd30ad545..131e6bd6703 100644 --- a/pwiz_tools/Skyline/TestFunctional/CleavableCrosslinkTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/CleavableCrosslinkTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ClusteredHeatMapTest.cs b/pwiz_tools/Skyline/TestFunctional/ClusteredHeatMapTest.cs index 4426afed6c0..3d5eeb60812 100644 --- a/pwiz_tools/Skyline/TestFunctional/ClusteredHeatMapTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ClusteredHeatMapTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ComplexCrosslinkTest.cs b/pwiz_tools/Skyline/TestFunctional/ComplexCrosslinkTest.cs index fe48f794f1d..ce016ad38ef 100644 --- a/pwiz_tools/Skyline/TestFunctional/ComplexCrosslinkTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ComplexCrosslinkTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ConfigureToolsDlgTest.cs b/pwiz_tools/Skyline/TestFunctional/ConfigureToolsDlgTest.cs index 81eaeca9d12..af77979a513 100644 --- a/pwiz_tools/Skyline/TestFunctional/ConfigureToolsDlgTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ConfigureToolsDlgTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Daniel Broudy , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ConstrainNormalizationMethodTest.cs b/pwiz_tools/Skyline/TestFunctional/ConstrainNormalizationMethodTest.cs index e76e2604796..955216edc13 100644 --- a/pwiz_tools/Skyline/TestFunctional/ConstrainNormalizationMethodTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ConstrainNormalizationMethodTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/CopyPasteTest.cs b/pwiz_tools/Skyline/TestFunctional/CopyPasteTest.cs index 3721038831a..0c6ac04f22f 100644 --- a/pwiz_tools/Skyline/TestFunctional/CopyPasteTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/CopyPasteTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Alana Killeen , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/CopyProteinGroupTest.cs b/pwiz_tools/Skyline/TestFunctional/CopyProteinGroupTest.cs index 185f1f0d027..da9a62394a9 100644 --- a/pwiz_tools/Skyline/TestFunctional/CopyProteinGroupTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/CopyProteinGroupTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/CrosslinkChromatogramTest.cs b/pwiz_tools/Skyline/TestFunctional/CrosslinkChromatogramTest.cs index 64a3fa462a3..639d0424a79 100644 --- a/pwiz_tools/Skyline/TestFunctional/CrosslinkChromatogramTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/CrosslinkChromatogramTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/CrosslinkImsTest.cs b/pwiz_tools/Skyline/TestFunctional/CrosslinkImsTest.cs index b292daedd0a..438be620529 100644 --- a/pwiz_tools/Skyline/TestFunctional/CrosslinkImsTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/CrosslinkImsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/CrosslinkNeutralLossTest.cs b/pwiz_tools/Skyline/TestFunctional/CrosslinkNeutralLossTest.cs index 6612c4cab8f..f9598b4c024 100644 --- a/pwiz_tools/Skyline/TestFunctional/CrosslinkNeutralLossTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/CrosslinkNeutralLossTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/CrosslinkNeutralLossTest.data/CrosslinkNeutralLossTest.sky b/pwiz_tools/Skyline/TestFunctional/CrosslinkNeutralLossTest.data/CrosslinkNeutralLossTest.sky index d491f1e2322..d238608038a 100644 --- a/pwiz_tools/Skyline/TestFunctional/CrosslinkNeutralLossTest.data/CrosslinkNeutralLossTest.sky +++ b/pwiz_tools/Skyline/TestFunctional/CrosslinkNeutralLossTest.data/CrosslinkNeutralLossTest.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestFunctional/CrosslinkingTest.cs b/pwiz_tools/Skyline/TestFunctional/CrosslinkingTest.cs index 610ed1b897c..0f9f3f6fef2 100644 --- a/pwiz_tools/Skyline/TestFunctional/CrosslinkingTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/CrosslinkingTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/DdaPeakIntegrationTest.cs b/pwiz_tools/Skyline/TestFunctional/DdaPeakIntegrationTest.cs index d22eea9c2a6..7cdec76d0b0 100644 --- a/pwiz_tools/Skyline/TestFunctional/DdaPeakIntegrationTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/DdaPeakIntegrationTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/DdaScoringTest.cs b/pwiz_tools/Skyline/TestFunctional/DdaScoringTest.cs index 504bb6e0340..95757872691 100644 --- a/pwiz_tools/Skyline/TestFunctional/DdaScoringTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/DdaScoringTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/DdaSearchTest.cs b/pwiz_tools/Skyline/TestFunctional/DdaSearchTest.cs index ebfa498826c..450223b5641 100644 --- a/pwiz_tools/Skyline/TestFunctional/DdaSearchTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/DdaSearchTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2020 University of Washington - Seattle, WA diff --git a/pwiz_tools/Skyline/TestFunctional/DecoyTargetMatchTest.cs b/pwiz_tools/Skyline/TestFunctional/DecoyTargetMatchTest.cs index a4628a148e9..03cea826363 100644 --- a/pwiz_tools/Skyline/TestFunctional/DecoyTargetMatchTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/DecoyTargetMatchTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/DetectionsPlotErrorTest.cs b/pwiz_tools/Skyline/TestFunctional/DetectionsPlotErrorTest.cs index 49902768647..e774d762da5 100644 --- a/pwiz_tools/Skyline/TestFunctional/DetectionsPlotErrorTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/DetectionsPlotErrorTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/DetectionsPlotTest.cs b/pwiz_tools/Skyline/TestFunctional/DetectionsPlotTest.cs index 71b4224f063..cb600475639 100644 --- a/pwiz_tools/Skyline/TestFunctional/DetectionsPlotTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/DetectionsPlotTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Rita Chupalov , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/DiaSearchTest.cs b/pwiz_tools/Skyline/TestFunctional/DiaSearchTest.cs index b7de4fdf817..9f1a2206c49 100644 --- a/pwiz_tools/Skyline/TestFunctional/DiaSearchTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/DiaSearchTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2020 University of Washington - Seattle, WA diff --git a/pwiz_tools/Skyline/TestFunctional/DirtyDocumentSharingTest.cs b/pwiz_tools/Skyline/TestFunctional/DirtyDocumentSharingTest.cs index 4dbcecaaa48..253a76a9d8f 100644 --- a/pwiz_tools/Skyline/TestFunctional/DirtyDocumentSharingTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/DirtyDocumentSharingTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/DisplayLanguageTest.cs b/pwiz_tools/Skyline/TestFunctional/DisplayLanguageTest.cs index 49141d6ef95..e0b4235f15c 100644 --- a/pwiz_tools/Skyline/TestFunctional/DisplayLanguageTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/DisplayLanguageTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/DissociationMethodTest.cs b/pwiz_tools/Skyline/TestFunctional/DissociationMethodTest.cs index 7e08177e1e1..8857cb4a01d 100644 --- a/pwiz_tools/Skyline/TestFunctional/DissociationMethodTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/DissociationMethodTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/DocumentFileLockingTest.cs b/pwiz_tools/Skyline/TestFunctional/DocumentFileLockingTest.cs index 9d679dd8171..21eaae2cc96 100644 --- a/pwiz_tools/Skyline/TestFunctional/DocumentFileLockingTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/DocumentFileLockingTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/DocumentGridChromatogramDataTest.cs b/pwiz_tools/Skyline/TestFunctional/DocumentGridChromatogramDataTest.cs index 3b104386042..a198e2e08bc 100644 --- a/pwiz_tools/Skyline/TestFunctional/DocumentGridChromatogramDataTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/DocumentGridChromatogramDataTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/DocumentGridClipboardOperationsTest.cs b/pwiz_tools/Skyline/TestFunctional/DocumentGridClipboardOperationsTest.cs index 0374ca5d806..9456df758f1 100644 --- a/pwiz_tools/Skyline/TestFunctional/DocumentGridClipboardOperationsTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/DocumentGridClipboardOperationsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/DocumentGridExportTest.cs b/pwiz_tools/Skyline/TestFunctional/DocumentGridExportTest.cs index ae7c4f84691..64bcdd6b3f7 100644 --- a/pwiz_tools/Skyline/TestFunctional/DocumentGridExportTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/DocumentGridExportTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/DocumentGridTest.cs b/pwiz_tools/Skyline/TestFunctional/DocumentGridTest.cs index 148d32215e8..9c649883c6c 100644 --- a/pwiz_tools/Skyline/TestFunctional/DocumentGridTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/DocumentGridTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/DocumentGridUndoTest.cs b/pwiz_tools/Skyline/TestFunctional/DocumentGridUndoTest.cs index 8b4f0510005..b91ced2d463 100644 --- a/pwiz_tools/Skyline/TestFunctional/DocumentGridUndoTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/DocumentGridUndoTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/DocumentReportTest.cs b/pwiz_tools/Skyline/TestFunctional/DocumentReportTest.cs index f942ad3b34b..124564d2bfc 100644 --- a/pwiz_tools/Skyline/TestFunctional/DocumentReportTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/DocumentReportTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/DocumentSizeErrorTest.cs b/pwiz_tools/Skyline/TestFunctional/DocumentSizeErrorTest.cs index c184079c940..795d6d417a2 100644 --- a/pwiz_tools/Skyline/TestFunctional/DocumentSizeErrorTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/DocumentSizeErrorTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/DuplicateSmallMoleculePrecursorTest.cs b/pwiz_tools/Skyline/TestFunctional/DuplicateSmallMoleculePrecursorTest.cs index 6ac2e9cb4e0..15a641afd9b 100644 --- a/pwiz_tools/Skyline/TestFunctional/DuplicateSmallMoleculePrecursorTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/DuplicateSmallMoleculePrecursorTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/DuplicateTransitionGroupTest.cs b/pwiz_tools/Skyline/TestFunctional/DuplicateTransitionGroupTest.cs index 5b0d4b11010..e08cefe5e93 100644 --- a/pwiz_tools/Skyline/TestFunctional/DuplicateTransitionGroupTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/DuplicateTransitionGroupTest.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Runtime.CompilerServices; using Microsoft.VisualStudio.TestTools.UnitTesting; using pwiz.Skyline.Controls.Databinding; diff --git a/pwiz_tools/Skyline/TestFunctional/EADZIonsTest.cs b/pwiz_tools/Skyline/TestFunctional/EADZIonsTest.cs index 3320af06e41..f77521d4014 100644 --- a/pwiz_tools/Skyline/TestFunctional/EADZIonsTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/EADZIonsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Rita Chupalov , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/EditCustomMoleculeDlgTest.cs b/pwiz_tools/Skyline/TestFunctional/EditCustomMoleculeDlgTest.cs index 550a7335892..7fa99ee0daf 100644 --- a/pwiz_tools/Skyline/TestFunctional/EditCustomMoleculeDlgTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/EditCustomMoleculeDlgTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Max Horowitz-Gelb , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/EditCustomThemeTest.cs b/pwiz_tools/Skyline/TestFunctional/EditCustomThemeTest.cs index aab4303bbae..8e5766fa9be 100644 --- a/pwiz_tools/Skyline/TestFunctional/EditCustomThemeTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/EditCustomThemeTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Yuval Boss , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/EditDialogsTest.cs b/pwiz_tools/Skyline/TestFunctional/EditDialogsTest.cs index 86ad4e1b2d0..b05c350b1fe 100644 --- a/pwiz_tools/Skyline/TestFunctional/EditDialogsTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/EditDialogsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/EditNeutralLossesTest.cs b/pwiz_tools/Skyline/TestFunctional/EditNeutralLossesTest.cs index 36c5dbd0bbd..f232548d3c0 100644 --- a/pwiz_tools/Skyline/TestFunctional/EditNeutralLossesTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/EditNeutralLossesTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/EditNoteTest.cs b/pwiz_tools/Skyline/TestFunctional/EditNoteTest.cs index 9e2b45ba8ad..f4b3013cdb7 100644 --- a/pwiz_tools/Skyline/TestFunctional/EditNoteTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/EditNoteTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Alana Killeen , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/EditSettingsTypesTest.cs b/pwiz_tools/Skyline/TestFunctional/EditSettingsTypesTest.cs index 96ac59e872f..a751751ed30 100644 --- a/pwiz_tools/Skyline/TestFunctional/EditSettingsTypesTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/EditSettingsTypesTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/EditSpectrumFilterTest.cs b/pwiz_tools/Skyline/TestFunctional/EditSpectrumFilterTest.cs index e57cddea7a8..8baa04c9599 100644 --- a/pwiz_tools/Skyline/TestFunctional/EditSpectrumFilterTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/EditSpectrumFilterTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/EditStaticModTest.cs b/pwiz_tools/Skyline/TestFunctional/EditStaticModTest.cs index c6312690f0d..bfebaa842d7 100644 --- a/pwiz_tools/Skyline/TestFunctional/EditStaticModTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/EditStaticModTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Alana Killeen , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/EditablePivotTest.cs b/pwiz_tools/Skyline/TestFunctional/EditablePivotTest.cs index 046f0d21e9b..172f4db8e2b 100644 --- a/pwiz_tools/Skyline/TestFunctional/EditablePivotTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/EditablePivotTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/EmptyFunctionalTest.cs b/pwiz_tools/Skyline/TestFunctional/EmptyFunctionalTest.cs index 026867012a5..645e50b3e02 100644 --- a/pwiz_tools/Skyline/TestFunctional/EmptyFunctionalTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/EmptyFunctionalTest.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2025 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Skyline/TestFunctional/EncyclopeDiaLibraryMatchTest.cs b/pwiz_tools/Skyline/TestFunctional/EncyclopeDiaLibraryMatchTest.cs index d3c1271a660..4961c111af2 100644 --- a/pwiz_tools/Skyline/TestFunctional/EncyclopeDiaLibraryMatchTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/EncyclopeDiaLibraryMatchTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/EncyclopeDiaPeptidesWithNoSignalTest.cs b/pwiz_tools/Skyline/TestFunctional/EncyclopeDiaPeptidesWithNoSignalTest.cs index d6ddd91600a..44d8c3568ae 100644 --- a/pwiz_tools/Skyline/TestFunctional/EncyclopeDiaPeptidesWithNoSignalTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/EncyclopeDiaPeptidesWithNoSignalTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/EncyclopeDiaScoreTest.cs b/pwiz_tools/Skyline/TestFunctional/EncyclopeDiaScoreTest.cs index bf3f07d53fb..19b4903d750 100644 --- a/pwiz_tools/Skyline/TestFunctional/EncyclopeDiaScoreTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/EncyclopeDiaScoreTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/EncyclopeDiaSearchTest.cs b/pwiz_tools/Skyline/TestFunctional/EncyclopeDiaSearchTest.cs index 924ca23800c..82b40ed39b6 100644 --- a/pwiz_tools/Skyline/TestFunctional/EncyclopeDiaSearchTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/EncyclopeDiaSearchTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2022 University of Washington - Seattle, WA diff --git a/pwiz_tools/Skyline/TestFunctional/EncyclopeDiaTest.cs b/pwiz_tools/Skyline/TestFunctional/EncyclopeDiaTest.cs index 7963ae68a0e..f9731731f29 100644 --- a/pwiz_tools/Skyline/TestFunctional/EncyclopeDiaTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/EncyclopeDiaTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ExplicitAnalyteConcentrationTest.cs b/pwiz_tools/Skyline/TestFunctional/ExplicitAnalyteConcentrationTest.cs index fdaaff78107..42a28db1b83 100644 --- a/pwiz_tools/Skyline/TestFunctional/ExplicitAnalyteConcentrationTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ExplicitAnalyteConcentrationTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ExplicitMissingPeakBoundsTest.cs b/pwiz_tools/Skyline/TestFunctional/ExplicitMissingPeakBoundsTest.cs index aa2e4da5abe..2b7f2727b83 100644 --- a/pwiz_tools/Skyline/TestFunctional/ExplicitMissingPeakBoundsTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ExplicitMissingPeakBoundsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ExplicitPeakBoundsTest.cs b/pwiz_tools/Skyline/TestFunctional/ExplicitPeakBoundsTest.cs index 0c75a32cdb2..ec352a74a8c 100644 --- a/pwiz_tools/Skyline/TestFunctional/ExplicitPeakBoundsTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ExplicitPeakBoundsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ExplicitPeakScoreTest.cs b/pwiz_tools/Skyline/TestFunctional/ExplicitPeakScoreTest.cs index 04f6c3d494c..cf65a4daac7 100644 --- a/pwiz_tools/Skyline/TestFunctional/ExplicitPeakScoreTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ExplicitPeakScoreTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ExportAnnotationsTest.cs b/pwiz_tools/Skyline/TestFunctional/ExportAnnotationsTest.cs index a727ea9a567..227793b9edf 100644 --- a/pwiz_tools/Skyline/TestFunctional/ExportAnnotationsTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ExportAnnotationsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ExportChromatogramTest.cs b/pwiz_tools/Skyline/TestFunctional/ExportChromatogramTest.cs index b6de438a440..1c020d9d31d 100644 --- a/pwiz_tools/Skyline/TestFunctional/ExportChromatogramTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ExportChromatogramTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Dario Amodei , * Mallick Lab, Department of Radiology, Stanford * diff --git a/pwiz_tools/Skyline/TestFunctional/ExportDiaListTest.cs b/pwiz_tools/Skyline/TestFunctional/ExportDiaListTest.cs index 1a39c3ab489..6bee20f7f3b 100644 --- a/pwiz_tools/Skyline/TestFunctional/ExportDiaListTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ExportDiaListTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ExportIsolationListTest.cs b/pwiz_tools/Skyline/TestFunctional/ExportIsolationListTest.cs index b25a4f3e0bb..ddcbecc29c6 100644 --- a/pwiz_tools/Skyline/TestFunctional/ExportIsolationListTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ExportIsolationListTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ExportMethodDialogTest.cs b/pwiz_tools/Skyline/TestFunctional/ExportMethodDialogTest.cs index ef0f9fd01cc..c3a4a146245 100644 --- a/pwiz_tools/Skyline/TestFunctional/ExportMethodDialogTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ExportMethodDialogTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Vagisha Sharma , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ExportPropertiesTest.cs b/pwiz_tools/Skyline/TestFunctional/ExportPropertiesTest.cs index 723febd116f..e511890032e 100644 --- a/pwiz_tools/Skyline/TestFunctional/ExportPropertiesTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ExportPropertiesTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ExportSmallMolSpectralLibraryTest.cs b/pwiz_tools/Skyline/TestFunctional/ExportSmallMolSpectralLibraryTest.cs index 562db9be395..cfa99e92440 100644 --- a/pwiz_tools/Skyline/TestFunctional/ExportSmallMolSpectralLibraryTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ExportSmallMolSpectralLibraryTest.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections.Generic; using System.Data.SQLite; using System.IO; diff --git a/pwiz_tools/Skyline/TestFunctional/ExportSpectralLibraryTest.cs b/pwiz_tools/Skyline/TestFunctional/ExportSpectralLibraryTest.cs index 8c9fa75a983..9e0d1239c52 100644 --- a/pwiz_tools/Skyline/TestFunctional/ExportSpectralLibraryTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ExportSpectralLibraryTest.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections.Generic; using System.Data.SQLite; using System.IO; diff --git a/pwiz_tools/Skyline/TestFunctional/ExpressionAnnotationsTest.cs b/pwiz_tools/Skyline/TestFunctional/ExpressionAnnotationsTest.cs index 2d5bf688f81..410f408080e 100644 --- a/pwiz_tools/Skyline/TestFunctional/ExpressionAnnotationsTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ExpressionAnnotationsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/FiguresOfMeritTest.cs b/pwiz_tools/Skyline/TestFunctional/FiguresOfMeritTest.cs index 4ededecdabb..9257e21dfa6 100644 --- a/pwiz_tools/Skyline/TestFunctional/FiguresOfMeritTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/FiguresOfMeritTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/FilesModelTest.cs b/pwiz_tools/Skyline/TestFunctional/FilesModelTest.cs index 7dec40df033..d88a89e3b90 100644 --- a/pwiz_tools/Skyline/TestFunctional/FilesModelTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/FilesModelTest.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2025 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); @@ -31,7 +31,7 @@ internal class FilesModelTest : AbstractFunctionalTest public void TestFilesModel() { // These test files are large (90MB) so reuse rather than duplicate - TestFilesZip = @"TestFunctional\FilesTreeFormTest.zip"; + TestFilesZip = FilesTreeFormTest.TEST_FILES_ZIP; RunFunctionalTest(); } diff --git a/pwiz_tools/Skyline/TestFunctional/FilesTreeFileSystemTest.cs b/pwiz_tools/Skyline/TestFunctional/FilesTreeFileSystemTest.cs index 384ad450d0b..a34905c68f4 100644 --- a/pwiz_tools/Skyline/TestFunctional/FilesTreeFileSystemTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/FilesTreeFileSystemTest.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2025 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Skyline/TestFunctional/FilesTreeFormTest.cs b/pwiz_tools/Skyline/TestFunctional/FilesTreeFormTest.cs index a12b3306f90..00d70f20a7f 100644 --- a/pwiz_tools/Skyline/TestFunctional/FilesTreeFormTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/FilesTreeFormTest.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2025 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); @@ -49,7 +49,8 @@ namespace pwiz.SkylineTestFunctional [TestClass] public class FilesTreeFormTest : AbstractFunctionalTest { - internal const string RAT_PLASMA_FILE_NAME = @"Rat_plasma.sky"; + internal const string TEST_FILES_ZIP = @"TestFunctional\FilesTreeFormTest.zip"; + internal const string RAT_PLASMA_FILE_NAME = "Rat_plasma.sky"; internal const int RAT_PLASMA_REPLICATE_COUNT = 42; // No parallel testing because SkylineException.txt is written to Skyline.exe @@ -57,9 +58,7 @@ public class FilesTreeFormTest : AbstractFunctionalTest [TestMethod, NoParallelTesting(TestExclusionReason.SHARED_DIRECTORY_WRITE)] public void TestFilesTreeForm() { - TestFilesZipPaths = new[] { - @"TestFunctional\FilesTreeFormTest.zip", - }; + TestFilesZip = TEST_FILES_ZIP; RunFunctionalTest(); } @@ -451,7 +450,7 @@ protected void TestRatPlasmaDocument() TestSpectralLibraries(); TestMonitoringFileSystem(); - + TestDragAndDrop(); TestDragAndDropOnParentNode(); diff --git a/pwiz_tools/Skyline/TestFunctional/FilesTreePropertyGridTest.cs b/pwiz_tools/Skyline/TestFunctional/FilesTreePropertyGridTest.cs new file mode 100644 index 00000000000..8366b591d36 --- /dev/null +++ b/pwiz_tools/Skyline/TestFunctional/FilesTreePropertyGridTest.cs @@ -0,0 +1,190 @@ +/* + * Original author: Aaron Banse , + * MacCoss Lab, Department of Genome Sciences, UW + * + * Copyright 2025 University of Washington - Seattle, WA + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ + +using Microsoft.VisualStudio.TestTools.UnitTesting; +using pwiz.Skyline.Controls; +using pwiz.Skyline.Controls.FilesTree; +using pwiz.Skyline.Model.DocSettings; +using pwiz.Skyline.Model.Files; +using pwiz.SkylineTestUtil; +using System; +using System.Collections.Generic; +using System.ComponentModel; +using System.IO; + +namespace pwiz.SkylineTestFunctional +{ + [TestClass] + public class FilesTreePropertyGridTest : AbstractFunctionalTest + { + private const string NAME_PROP_NAME = "Name"; + private const string FILES_TREE_EXPECTED_PROPS_PREFIX = "files-tree"; + private const string SPECTRAL_LIBRARY_CASE_PROPS_PREFIX = "speclib-with-datafiles"; + + private Dictionary> _expectedProperties; + + protected override bool IsRecordMode => false; + + [TestMethod] + public void TestFilesTreePropertyGrid() + { + TestFilesZipPaths = new[] { PropertyGridTestUtil.TEST_FILES_ZIP }; + + RunFunctionalTest(); + } + + protected override void DoTest() + { + Setup(Path.Combine(TestFilesDirs[0].FullPath, @"Rat_plasma.sky")); + + // setup expected properties + _expectedProperties = PropertyGridTestUtil.ReadAllExpectedPropertyValues(FILES_TREE_EXPECTED_PROPS_PREFIX, IsRecordMode); + + // Test each data object if they display expected properties + TestReplicateProperties(); + TestSpectralLibraryProperties(0); + + // In record mode, write out expected properties so they can be compared in future test runs + if (IsRecordMode) PropertyGridTestUtil.WriteAllExpectedPropertyValues(FILES_TREE_EXPECTED_PROPS_PREFIX, _expectedProperties); + + // Test annotation properties and editing + TestAnnotationProperties(); + TestEditProperty(); + TestHandleReplicateNameException(); + + // Test spectral library with datafiles case + _expectedProperties = PropertyGridTestUtil.ReadAllExpectedPropertyValues(SPECTRAL_LIBRARY_CASE_PROPS_PREFIX, IsRecordMode); + TestSpectralLibraryProperties(1); + if (IsRecordMode) PropertyGridTestUtil.WriteAllExpectedPropertyValues(SPECTRAL_LIBRARY_CASE_PROPS_PREFIX, _expectedProperties); + + CloseForms(); + } + + private static void Setup(string documentPath) + { + RunUI(() => SkylineWindow.OpenFile(documentPath)); + + RunUI(() => { SkylineWindow.ShowFilesTreeForm(true); }); + WaitForConditionUI(() => SkylineWindow.FilesTreeFormIsVisible); + + RunUI(() => { SkylineWindow.ShowPropertyGridForm(true); }); + WaitForConditionUI(() => SkylineWindow.PropertyGridFormIsVisible); + } + + private void TestReplicateProperties() + { + var folder = SkylineWindow.FilesTree.Folder(); + var replicateNode = folder.Nodes[0] as FilesTreeNode; + Assert.IsNotNull(replicateNode); + RunUI(() => { SkylineWindow.FilesTreeForm.FilesTree.SelectedNode = replicateNode; }); + + PropertyGridTestUtil.LogOrTestExpectedPropertyValues(SkylineWindow, _expectedProperties, + nameof(Skyline.Model.Databinding.Entities.Replicate), IsRecordMode); + } + + private void TestSpectralLibraryProperties(int specLibIndex) + { + var folder = SkylineWindow.FilesTree.Folder(); + var spectralLibraryNode = folder.Nodes[specLibIndex] as FilesTreeNode; + Assert.IsNotNull(spectralLibraryNode); + RunUI(() => { SkylineWindow.FilesTreeForm.FilesTree.SelectedNode = spectralLibraryNode; }); + + PropertyGridTestUtil.LogOrTestExpectedPropertyValues(SkylineWindow, _expectedProperties, + nameof(Skyline.Model.Databinding.Entities.SpectralLibrary), IsRecordMode); + } + + private void TestAnnotationProperties() + { + // Add annotation definitions for replicates + RunUI(() => { PropertyGridTestUtil.TestAddAnnotations(SkylineWindow, AnnotationDef.AnnotationTarget.replicate); }); + + // Select replicate node + var replicateFolder = SkylineWindow.FilesTree.Folder(); + var replicateNode = SkylineWindow.FilesTree.File(replicateFolder); + Assert.IsNotNull(replicateNode); + RunUI(() => { SkylineWindow.FilesTreeForm.FilesTree.SelectedNode = replicateNode; }); + var selectedObject = SkylineWindow.PropertyGridForm?.GetPropertyObject(); + Assert.IsNotNull(selectedObject); + + // Test if sum of original properties and new annotation definition properties appear + var props = TypeDescriptor.GetProperties(selectedObject, false); + Assert.AreEqual(props.Count, + _expectedProperties[nameof(Skyline.Model.Databinding.Entities.Replicate)].Count + + SkylineWindow.Document.Settings.DataSettings.AnnotationDefs.Count); + + // Test editing annotation properties + RunUI(() => { PropertyGridTestUtil.TestEditAnnotations(SkylineWindow); }); + } + + private static void TestEditProperty() + { + // select replicate + var replicateFolder = SkylineWindow.FilesTree.Folder(); + var replicateNode = SkylineWindow.FilesTree.File(replicateFolder); + Assert.IsNotNull(replicateNode); + RunUI(() => { SkylineWindow.FilesTreeForm.FilesTree.SelectedNode = replicateNode; }); + + // Edit the Name property of the selected object and verify the change was made on the object and UI + RunUI(() => { PropertyGridTestUtil.TestEditProperty(SkylineWindow, NAME_PROP_NAME, "EditedName"); }); + } + + private static void TestHandleReplicateNameException() + { + // select replicate + var replicateFolder = SkylineWindow.FilesTree.Folder(); + var replicateNode = replicateFolder.Nodes[0] as FilesTreeNode; + Assert.IsNotNull(replicateNode); + RunUI(() => { SkylineWindow.FilesTreeForm.FilesTree.SelectedNode = replicateNode; }); + + // get another replicate to use its name for testing + var otherReplicateNode = replicateFolder.Nodes[1] as FilesTreeNode; + Assert.IsNotNull(otherReplicateNode); + + // attempt to edit the name to the name of another replicate. Should throw an exception. + RunUI(() => + { + var selectedObject = SkylineWindow.PropertyGridForm.GetPropertyObject(); + Assert.IsNotNull(selectedObject); + var prop = TypeDescriptor.GetProperties(selectedObject, false)[NAME_PROP_NAME]; + try + { + prop.SetValue(selectedObject, otherReplicateNode.Name); + // this should fail, if not, fail the test + Assert.Fail("Setting replicate name to an existing replicate name should throw an exception."); + } + catch (ArgumentException) + { + // Expected exception, verify that the name was not changed + Assert.IsFalse(prop.GetValue(selectedObject)?.Equals(otherReplicateNode.Name) ?? true); + } + }); + } + + private static void CloseForms() + { + var filesTreeForm = FindOpenForm(); + Assert.IsNotNull(filesTreeForm); + OkDialog(filesTreeForm, filesTreeForm.Close); + + var propertyGridForm = FindOpenForm(); + Assert.IsNotNull(propertyGridForm); + OkDialog(propertyGridForm, propertyGridForm.Close); + } + } +} diff --git a/pwiz_tools/Skyline/TestFunctional/FilterMzTest.cs b/pwiz_tools/Skyline/TestFunctional/FilterMzTest.cs index 2a8389726c0..4ab625a2409 100644 --- a/pwiz_tools/Skyline/TestFunctional/FilterMzTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/FilterMzTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/FindColumnTest.cs b/pwiz_tools/Skyline/TestFunctional/FindColumnTest.cs index be83d84a25a..494e2ea270b 100644 --- a/pwiz_tools/Skyline/TestFunctional/FindColumnTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/FindColumnTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/FindNodeCancelTest.cs b/pwiz_tools/Skyline/TestFunctional/FindNodeCancelTest.cs index 48ceb101ec6..a5c47539734 100644 --- a/pwiz_tools/Skyline/TestFunctional/FindNodeCancelTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/FindNodeCancelTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/FormUtilTest.cs b/pwiz_tools/Skyline/TestFunctional/FormUtilTest.cs index 3edf11bbb13..944bb19e7e3 100644 --- a/pwiz_tools/Skyline/TestFunctional/FormUtilTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/FormUtilTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/FullScanGraphTest.cs b/pwiz_tools/Skyline/TestFunctional/FullScanGraphTest.cs index c058d227f1e..6453ca558b9 100644 --- a/pwiz_tools/Skyline/TestFunctional/FullScanGraphTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/FullScanGraphTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/FullScanPropertiesTest.cs b/pwiz_tools/Skyline/TestFunctional/FullScanPropertiesTest.cs index 4bf534066d5..c6636d115f6 100644 --- a/pwiz_tools/Skyline/TestFunctional/FullScanPropertiesTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/FullScanPropertiesTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/GroupComparisonPivotEditorTest.cs b/pwiz_tools/Skyline/TestFunctional/GroupComparisonPivotEditorTest.cs index 5a101d71234..7b62b76d9fa 100644 --- a/pwiz_tools/Skyline/TestFunctional/GroupComparisonPivotEditorTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/GroupComparisonPivotEditorTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/GroupComparisonRefineTest.cs b/pwiz_tools/Skyline/TestFunctional/GroupComparisonRefineTest.cs index 76ae0edf19e..2a59dbb0d3f 100644 --- a/pwiz_tools/Skyline/TestFunctional/GroupComparisonRefineTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/GroupComparisonRefineTest.cs @@ -1,4 +1,4 @@ -using Microsoft.VisualStudio.TestTools.UnitTesting; +using Microsoft.VisualStudio.TestTools.UnitTesting; using pwiz.Skyline.Alerts; using pwiz.Skyline.EditUI; using pwiz.SkylineTestUtil; diff --git a/pwiz_tools/Skyline/TestFunctional/GroupComparisonScenariosTest.cs b/pwiz_tools/Skyline/TestFunctional/GroupComparisonScenariosTest.cs index a6175dc76e2..9506d8250ca 100644 --- a/pwiz_tools/Skyline/TestFunctional/GroupComparisonScenariosTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/GroupComparisonScenariosTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/GroupComparisonTest.cs b/pwiz_tools/Skyline/TestFunctional/GroupComparisonTest.cs index c5dd940485a..85ab6a14f74 100644 --- a/pwiz_tools/Skyline/TestFunctional/GroupComparisonTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/GroupComparisonTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/GroupComparisonVolcanoPlotTest.cs b/pwiz_tools/Skyline/TestFunctional/GroupComparisonVolcanoPlotTest.cs index aee3b2c7597..2eb3e4be4f6 100644 --- a/pwiz_tools/Skyline/TestFunctional/GroupComparisonVolcanoPlotTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/GroupComparisonVolcanoPlotTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tobias Rohde , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/HeavyNicknamesTest.cs b/pwiz_tools/Skyline/TestFunctional/HeavyNicknamesTest.cs index f0c42f3ff5b..6e89c175ab3 100644 --- a/pwiz_tools/Skyline/TestFunctional/HeavyNicknamesTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/HeavyNicknamesTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/HelpDocumentationContentTest.cs b/pwiz_tools/Skyline/TestFunctional/HelpDocumentationContentTest.cs new file mode 100644 index 00000000000..475cbbbc761 --- /dev/null +++ b/pwiz_tools/Skyline/TestFunctional/HelpDocumentationContentTest.cs @@ -0,0 +1,190 @@ +/* + * Original author: Nicholas Shulman , + * MacCoss Lab, Department of Genome Sciences, UW + * + * Copyright 2025 University of Washington - Seattle, WA + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ + +using System; +using System.Collections.Generic; +using System.ComponentModel; +using System.Globalization; +using System.IO; +using System.Linq; +using System.Windows.Forms; +using Microsoft.VisualStudio.TestTools.UnitTesting; +using pwiz.Common.Collections; +using pwiz.Common.DataBinding; +using pwiz.Common.DataBinding.Documentation; +using pwiz.Common.SystemUtil; +using pwiz.Skyline; +using pwiz.Skyline.Menus; +using pwiz.Skyline.Model; +using pwiz.Skyline.Model.Databinding; +using pwiz.Skyline.Model.Databinding.Entities; +using pwiz.Skyline.Properties; +using pwiz.SkylineTestUtil; + +namespace pwiz.SkylineTestFunctional +{ + /// + /// Verifies that the HTML files in the "Documentation\Help" folder contain the same text + /// as would be displayed on the "Help > Documentation" menu item. + /// + [TestClass] + public class HelpDocumentationContentTest : AbstractFunctionalTest + { + protected override bool IsRecordMode => false; + + [TestMethod] + public void TestKeyboardShortcutsHelpDocumentation() + { + RunFunctionalTest(); + } + + protected override void DoTest() + { + ForEachLanguage(() => + { + RunUI(() => + { + var filePath = Path.Combine(GetDocumentationHelpFolder(), "KeyboardShortcuts.html"); + ApplyResourcesToSkylineMenus(SkylineWindow); + var html = KeyboardShortcutDocumentation.GenerateKeyboardShortcutHtml(Program.MainWindow.MainMenuStrip); + VerifyFileContents(filePath, html); + }); + }); + } + + [TestMethod] + public void TestReportsHelpDocumentation() + { + var srmDocument = new SrmDocument(SrmSettingsList.GetDefault()); + ForEachLanguage(() => + { + var filePath = Path.Combine(GetDocumentationHelpFolder(), "Reports.html"); + var skylineDataSchema = + SkylineDataSchema.MemoryDataSchema(srmDocument, SkylineDataSchema.GetLocalizedSchemaLocalizer()); + var documentationGenerator = new DocumentationGenerator( + ColumnDescriptor.RootColumn(skylineDataSchema, typeof(SkylineDocument))) + { + IncludeHidden = false + }; + var html = documentationGenerator.GetDocumentationHtmlPage(); + VerifyFileContents(filePath, html); + }); + } + + [TestMethod] + public void TestCommandLineHelpDocumentation() + { + // Reset the settings before the test since some command-line options like "--background-proteome-name" include + // values from the user settings. + Settings.Default.Reset(); + ForEachLanguage(() => + { + var filePath = Path.Combine(GetDocumentationHelpFolder(), "CommandLine.html"); + var html = CommandArgs.GenerateUsageHtml(); + VerifyFileContents(filePath, html); + }); + } + + private void ForEachLanguage(Action action) + { + foreach (var language in new []{ "en", "ja", "zh-CHS" }) + { + var cultureInfo = CultureInfo.GetCultureInfo(language); + Assert.IsNotNull(cultureInfo); + Assert.AreEqual(language, cultureInfo.Name); + LocalizationHelper.CallWithCulture(cultureInfo, () => + { + action(); + return 0; + }); + } + Assert.IsFalse(IsRecordMode, "Set IsRecordMode to false before commit"); // Avoid merging code with record mode left on. + } + + /// + /// Returns the folder where the generated HTML should be stored in the source tree which is + /// a folder with the language name under the "Documentation\Help" folder. + /// + protected string GetDocumentationHelpFolder() + { + return Path.Combine(ExtensionTestContext.GetProjectDirectory("Documentation\\Help"), + CultureInfo.CurrentCulture.Name); + } + + protected void VerifyFileContents(string path, string expectedContents) + { + string actualContents = null; + if (File.Exists(path)) + { + actualContents = File.ReadAllText(path); + } + if (IsRecordMode) + { + if (actualContents != expectedContents) + { + Directory.CreateDirectory(Path.GetDirectoryName(path)!); + File.WriteAllText(path, expectedContents); + } + } + else + { + var message = "Rerun test with IsRecordMode=>true to update file contents"; + AssertEx.FileExists(path, message); + AssertEx.NoDiff(expectedContents, actualContents, message); + } + } + + /// + /// Localizes all items on Skyline main menu based on CultureInfo.CurrentUICulture + /// + /// + private static void ApplyResourcesToSkylineMenus(SkylineWindow skylineWindow) + { + var processedItems = new HashSet>(); + foreach ((ComponentResourceManager resourceManager, IEnumerable items) in GetMenuItems(skylineWindow)) + { + ApplyResources(resourceManager, items, processedItems); + } + } + + private static void ApplyResources(ComponentResourceManager resourceManager, IEnumerable items, + HashSet> processedItems) + { + foreach (var item in items ?? Array.Empty()) + { + if (!processedItems.Add(item)) + { + continue; + } + resourceManager.ApplyResources(item, item.Name); + ApplyResources(resourceManager, (item as ToolStripDropDownItem)?.DropDownItems.Cast(), processedItems); + } + } + + private static IEnumerable>> GetMenuItems( + SkylineWindow skylineWindow) + { + yield return Tuple.Create(new ComponentResourceManager(typeof(RefineMenu)), skylineWindow.RefineMenu.DropDownItems); + yield return Tuple.Create(new ComponentResourceManager(typeof(EditMenu)), skylineWindow.EditMenu.DropDownItems); + yield return Tuple.Create(new ComponentResourceManager(typeof(ViewMenu)), skylineWindow.ViewMenu.DropDownItems); + yield return Tuple.Create(new ComponentResourceManager(typeof(SkylineWindow)), + skylineWindow.MainMenuStrip.Items.OfType()); + } + } +} diff --git a/pwiz_tools/Skyline/TestFunctional/HighPrecModsTest.cs b/pwiz_tools/Skyline/TestFunctional/HighPrecModsTest.cs index 01623b9ed84..8a3c4ae26db 100644 --- a/pwiz_tools/Skyline/TestFunctional/HighPrecModsTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/HighPrecModsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ImmediateWindowTest.cs b/pwiz_tools/Skyline/TestFunctional/ImmediateWindowTest.cs index b27e1e4ec7a..198665a2de5 100644 --- a/pwiz_tools/Skyline/TestFunctional/ImmediateWindowTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ImmediateWindowTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Daniel Broudy , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ImmediateWindowWarningsTest.cs b/pwiz_tools/Skyline/TestFunctional/ImmediateWindowWarningsTest.cs index 31ce7395a57..c142d394d25 100644 --- a/pwiz_tools/Skyline/TestFunctional/ImmediateWindowWarningsTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ImmediateWindowWarningsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ImportAnnotationsTest.cs b/pwiz_tools/Skyline/TestFunctional/ImportAnnotationsTest.cs index b53d2faaa99..c8bea3ae0e8 100644 --- a/pwiz_tools/Skyline/TestFunctional/ImportAnnotationsTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ImportAnnotationsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ImportEncyclopeDiaLibraryTest.cs b/pwiz_tools/Skyline/TestFunctional/ImportEncyclopeDiaLibraryTest.cs index 43930e1f4d4..12b4bde4183 100644 --- a/pwiz_tools/Skyline/TestFunctional/ImportEncyclopeDiaLibraryTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ImportEncyclopeDiaLibraryTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ImportFailureTest.cs b/pwiz_tools/Skyline/TestFunctional/ImportFailureTest.cs index 429db7aab3e..5dece5b6f03 100644 --- a/pwiz_tools/Skyline/TestFunctional/ImportFailureTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ImportFailureTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ImportIsolationSchemeTest.cs b/pwiz_tools/Skyline/TestFunctional/ImportIsolationSchemeTest.cs index c3e9d5690eb..964f6a0558e 100644 --- a/pwiz_tools/Skyline/TestFunctional/ImportIsolationSchemeTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ImportIsolationSchemeTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ImportPeptideSearchTest.cs b/pwiz_tools/Skyline/TestFunctional/ImportPeptideSearchTest.cs index 46b8006b73a..a28757c7f20 100644 --- a/pwiz_tools/Skyline/TestFunctional/ImportPeptideSearchTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ImportPeptideSearchTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ImportPromptToSaveTest.cs b/pwiz_tools/Skyline/TestFunctional/ImportPromptToSaveTest.cs index da61df2b35e..0b3ad4810df 100644 --- a/pwiz_tools/Skyline/TestFunctional/ImportPromptToSaveTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ImportPromptToSaveTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ImportResultsCancelTest.cs b/pwiz_tools/Skyline/TestFunctional/ImportResultsCancelTest.cs index 9d45a8be74d..3d62b58f08f 100644 --- a/pwiz_tools/Skyline/TestFunctional/ImportResultsCancelTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ImportResultsCancelTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ImportResultsFilesRestoreTest.cs b/pwiz_tools/Skyline/TestFunctional/ImportResultsFilesRestoreTest.cs index b5f7a728d76..ba89c2450a7 100644 --- a/pwiz_tools/Skyline/TestFunctional/ImportResultsFilesRestoreTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ImportResultsFilesRestoreTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ImportResultsFilesRestoreTest.data/test.sky b/pwiz_tools/Skyline/TestFunctional/ImportResultsFilesRestoreTest.data/test.sky index c6e2849fd2a..0d23b7b94ee 100644 --- a/pwiz_tools/Skyline/TestFunctional/ImportResultsFilesRestoreTest.data/test.sky +++ b/pwiz_tools/Skyline/TestFunctional/ImportResultsFilesRestoreTest.data/test.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestFunctional/ImportTransitionListTest.cs b/pwiz_tools/Skyline/TestFunctional/ImportTransitionListTest.cs index 77ec936efc6..84d9401c3e2 100644 --- a/pwiz_tools/Skyline/TestFunctional/ImportTransitionListTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ImportTransitionListTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/InsertTest.cs b/pwiz_tools/Skyline/TestFunctional/InsertTest.cs index fd1505699bf..a4fac8ae805 100644 --- a/pwiz_tools/Skyline/TestFunctional/InsertTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/InsertTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Alana Killeen , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/InstallToolsTest.cs b/pwiz_tools/Skyline/TestFunctional/InstallToolsTest.cs index 44a25bf85eb..7d6496a9cd8 100644 --- a/pwiz_tools/Skyline/TestFunctional/InstallToolsTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/InstallToolsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Daniel Broudy , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/InstrumentMinMaxTimeTest.cs b/pwiz_tools/Skyline/TestFunctional/InstrumentMinMaxTimeTest.cs index 6649db119ef..ba1f38089ff 100644 --- a/pwiz_tools/Skyline/TestFunctional/InstrumentMinMaxTimeTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/InstrumentMinMaxTimeTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/InteractiveCommandLineToolTest.cs b/pwiz_tools/Skyline/TestFunctional/InteractiveCommandLineToolTest.cs index 24786a7f13c..ab5d6d2b530 100644 --- a/pwiz_tools/Skyline/TestFunctional/InteractiveCommandLineToolTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/InteractiveCommandLineToolTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/InternationalFilenamesTest.cs b/pwiz_tools/Skyline/TestFunctional/InternationalFilenamesTest.cs index d16e9416605..5d5c7516b92 100644 --- a/pwiz_tools/Skyline/TestFunctional/InternationalFilenamesTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/InternationalFilenamesTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/InvalidPeptideRankIdTest.cs b/pwiz_tools/Skyline/TestFunctional/InvalidPeptideRankIdTest.cs index ad947a052d3..315cd437af5 100644 --- a/pwiz_tools/Skyline/TestFunctional/InvalidPeptideRankIdTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/InvalidPeptideRankIdTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/InvalidPeptidesInLibraryTest.cs b/pwiz_tools/Skyline/TestFunctional/InvalidPeptidesInLibraryTest.cs index d141d688f28..726ca8dff7a 100644 --- a/pwiz_tools/Skyline/TestFunctional/InvalidPeptidesInLibraryTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/InvalidPeptidesInLibraryTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/IonMobilityTest.cs b/pwiz_tools/Skyline/TestFunctional/IonMobilityTest.cs index cac4d1b5561..80cd9bb2c8d 100644 --- a/pwiz_tools/Skyline/TestFunctional/IonMobilityTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/IonMobilityTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/IrtCalibrationTest.cs b/pwiz_tools/Skyline/TestFunctional/IrtCalibrationTest.cs index 98b89fedea4..d27949293be 100644 --- a/pwiz_tools/Skyline/TestFunctional/IrtCalibrationTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/IrtCalibrationTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/IrtTest.cs b/pwiz_tools/Skyline/TestFunctional/IrtTest.cs index d1232013ec0..11978c3d465 100644 --- a/pwiz_tools/Skyline/TestFunctional/IrtTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/IrtTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: John Chilton , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/IsolationSchemeTest.cs b/pwiz_tools/Skyline/TestFunctional/IsolationSchemeTest.cs index affc4ab6736..755ed7f4952 100644 --- a/pwiz_tools/Skyline/TestFunctional/IsolationSchemeTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/IsolationSchemeTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/KoinaSkylineIntegrationTest.cs b/pwiz_tools/Skyline/TestFunctional/KoinaSkylineIntegrationTest.cs index 3f7feb3aff1..cf6775dc266 100644 --- a/pwiz_tools/Skyline/TestFunctional/KoinaSkylineIntegrationTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/KoinaSkylineIntegrationTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tobias Rohde , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/LabelPeakPickingTest.cs b/pwiz_tools/Skyline/TestFunctional/LabelPeakPickingTest.cs index d84b6e51c1c..1095358ddec 100644 --- a/pwiz_tools/Skyline/TestFunctional/LabelPeakPickingTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/LabelPeakPickingTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Dario Amodei , * Mallick Lab, Department of Radiology, Stanford * diff --git a/pwiz_tools/Skyline/TestFunctional/LegacyCrosslinkTest.cs b/pwiz_tools/Skyline/TestFunctional/LegacyCrosslinkTest.cs index 25b9af0a2e9..a148f49d290 100644 --- a/pwiz_tools/Skyline/TestFunctional/LegacyCrosslinkTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/LegacyCrosslinkTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/LegacyIgnoreSimTest.cs b/pwiz_tools/Skyline/TestFunctional/LegacyIgnoreSimTest.cs index 93c81234c92..43a83abab1c 100644 --- a/pwiz_tools/Skyline/TestFunctional/LegacyIgnoreSimTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/LegacyIgnoreSimTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/LegacyOptimizationStepTest.cs b/pwiz_tools/Skyline/TestFunctional/LegacyOptimizationStepTest.cs index 10db9a6fae7..74872766815 100644 --- a/pwiz_tools/Skyline/TestFunctional/LegacyOptimizationStepTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/LegacyOptimizationStepTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/LegacyScoringModelTest.cs b/pwiz_tools/Skyline/TestFunctional/LegacyScoringModelTest.cs index 06b3ac1585c..8340ddd23fb 100644 --- a/pwiz_tools/Skyline/TestFunctional/LegacyScoringModelTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/LegacyScoringModelTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/LibraryBuildShareTest.cs b/pwiz_tools/Skyline/TestFunctional/LibraryBuildShareTest.cs index 8831cace3f1..78944fe82c3 100644 --- a/pwiz_tools/Skyline/TestFunctional/LibraryBuildShareTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/LibraryBuildShareTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/LibraryBuildTest.cs b/pwiz_tools/Skyline/TestFunctional/LibraryBuildTest.cs index f89db030bce..d9273594913 100644 --- a/pwiz_tools/Skyline/TestFunctional/LibraryBuildTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/LibraryBuildTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/LibraryCacheTest.cs b/pwiz_tools/Skyline/TestFunctional/LibraryCacheTest.cs index 58a575c88af..ae004d64fa9 100644 --- a/pwiz_tools/Skyline/TestFunctional/LibraryCacheTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/LibraryCacheTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/LibraryMatchViewTest.cs b/pwiz_tools/Skyline/TestFunctional/LibraryMatchViewTest.cs index 8d4e90cd00f..48a36081daa 100644 --- a/pwiz_tools/Skyline/TestFunctional/LibraryMatchViewTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/LibraryMatchViewTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ListClusteringTest.cs b/pwiz_tools/Skyline/TestFunctional/ListClusteringTest.cs index c142bf0d67e..b5a598b43d3 100644 --- a/pwiz_tools/Skyline/TestFunctional/ListClusteringTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ListClusteringTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ListDesignerTest.cs b/pwiz_tools/Skyline/TestFunctional/ListDesignerTest.cs index b29c7053055..ce02893a37b 100644 --- a/pwiz_tools/Skyline/TestFunctional/ListDesignerTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ListDesignerTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/LiteDropdownListTest.cs b/pwiz_tools/Skyline/TestFunctional/LiteDropdownListTest.cs index 34dee02fda9..456759648f9 100644 --- a/pwiz_tools/Skyline/TestFunctional/LiteDropdownListTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/LiteDropdownListTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/LiveReportsErrorTest.cs b/pwiz_tools/Skyline/TestFunctional/LiveReportsErrorTest.cs index 80bc8107d73..0477e381825 100644 --- a/pwiz_tools/Skyline/TestFunctional/LiveReportsErrorTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/LiveReportsErrorTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/LiveReportsFilterTest.cs b/pwiz_tools/Skyline/TestFunctional/LiveReportsFilterTest.cs index aca2cad89ff..09fe25f4623 100644 --- a/pwiz_tools/Skyline/TestFunctional/LiveReportsFilterTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/LiveReportsFilterTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/LogScaleAxisTest.cs b/pwiz_tools/Skyline/TestFunctional/LogScaleAxisTest.cs index ffd182b2d09..412b70084aa 100644 --- a/pwiz_tools/Skyline/TestFunctional/LogScaleAxisTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/LogScaleAxisTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/LongWaitDlgResizeTest.cs b/pwiz_tools/Skyline/TestFunctional/LongWaitDlgResizeTest.cs index 56ee25b8941..e3e1631366f 100644 --- a/pwiz_tools/Skyline/TestFunctional/LongWaitDlgResizeTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/LongWaitDlgResizeTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/LongWaitTest.cs b/pwiz_tools/Skyline/TestFunctional/LongWaitTest.cs index 5e5b6fbc669..c03eb69b3a3 100644 --- a/pwiz_tools/Skyline/TestFunctional/LongWaitTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/LongWaitTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ManageLibraryRunsTest.cs b/pwiz_tools/Skyline/TestFunctional/ManageLibraryRunsTest.cs index f335daa7e8f..d9b30855eb9 100644 --- a/pwiz_tools/Skyline/TestFunctional/ManageLibraryRunsTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ManageLibraryRunsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tahmina Jahan , * UWPR, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ManageResultsUndoTest.cs b/pwiz_tools/Skyline/TestFunctional/ManageResultsUndoTest.cs index f65e984da86..19f53d58289 100644 --- a/pwiz_tools/Skyline/TestFunctional/ManageResultsUndoTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ManageResultsUndoTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ManagingSearchToolsTest.cs b/pwiz_tools/Skyline/TestFunctional/ManagingSearchToolsTest.cs index 58ebb957c9a..25391b4dfa7 100644 --- a/pwiz_tools/Skyline/TestFunctional/ManagingSearchToolsTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ManagingSearchToolsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/MassErrorGraphsTest.cs b/pwiz_tools/Skyline/TestFunctional/MassErrorGraphsTest.cs index a52ab46b365..5c2d7d83a4f 100644 --- a/pwiz_tools/Skyline/TestFunctional/MassErrorGraphsTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/MassErrorGraphsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Alex MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/MedianNormalizationTest.cs b/pwiz_tools/Skyline/TestFunctional/MedianNormalizationTest.cs index b63ceeed9c6..bee5db88c6d 100644 --- a/pwiz_tools/Skyline/TestFunctional/MedianNormalizationTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/MedianNormalizationTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/MessageBoxHelperTest.cs b/pwiz_tools/Skyline/TestFunctional/MessageBoxHelperTest.cs index 69b78dac04a..9a520a2bacc 100644 --- a/pwiz_tools/Skyline/TestFunctional/MessageBoxHelperTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/MessageBoxHelperTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/MetadataRuleTest.cs b/pwiz_tools/Skyline/TestFunctional/MetadataRuleTest.cs index 3d259be5abc..507fba5222d 100644 --- a/pwiz_tools/Skyline/TestFunctional/MetadataRuleTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/MetadataRuleTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/MidasModificationTest.cs b/pwiz_tools/Skyline/TestFunctional/MidasModificationTest.cs index dc255c5a9b1..614b7dd6a76 100644 --- a/pwiz_tools/Skyline/TestFunctional/MidasModificationTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/MidasModificationTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/MidasTest.cs b/pwiz_tools/Skyline/TestFunctional/MidasTest.cs index a0ae7a1f9c7..b2b2d8b6b59 100644 --- a/pwiz_tools/Skyline/TestFunctional/MidasTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/MidasTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Kaipo Tamura , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/MinimizeIrtTest.cs b/pwiz_tools/Skyline/TestFunctional/MinimizeIrtTest.cs index dddbe9d598c..5f6c0c54687 100644 --- a/pwiz_tools/Skyline/TestFunctional/MinimizeIrtTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/MinimizeIrtTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/MinimizeWithEmptyFilesTest.cs b/pwiz_tools/Skyline/TestFunctional/MinimizeWithEmptyFilesTest.cs index c9993d94062..86b96fcd872 100644 --- a/pwiz_tools/Skyline/TestFunctional/MinimizeWithEmptyFilesTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/MinimizeWithEmptyFilesTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/MiscFormsTest.cs b/pwiz_tools/Skyline/TestFunctional/MiscFormsTest.cs index 36c1df5a6c3..cbdff142861 100644 --- a/pwiz_tools/Skyline/TestFunctional/MiscFormsTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/MiscFormsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/MissingOptStepsTest.cs b/pwiz_tools/Skyline/TestFunctional/MissingOptStepsTest.cs index d5cad1133db..a5ab89686f8 100644 --- a/pwiz_tools/Skyline/TestFunctional/MissingOptStepsTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/MissingOptStepsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/MixedSrmPrmTest.cs b/pwiz_tools/Skyline/TestFunctional/MixedSrmPrmTest.cs index 4c44fed766c..449d68fb40a 100644 --- a/pwiz_tools/Skyline/TestFunctional/MixedSrmPrmTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/MixedSrmPrmTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ModificationPermuterTest.cs b/pwiz_tools/Skyline/TestFunctional/ModificationPermuterTest.cs index 5bd875bd2f0..8c7d69e7dc9 100644 --- a/pwiz_tools/Skyline/TestFunctional/ModificationPermuterTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ModificationPermuterTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ModifiedAreaProportionTest.cs b/pwiz_tools/Skyline/TestFunctional/ModifiedAreaProportionTest.cs index d7b69e45cd8..ab575d9060a 100644 --- a/pwiz_tools/Skyline/TestFunctional/ModifiedAreaProportionTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ModifiedAreaProportionTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ModifyMoleculeTest.cs b/pwiz_tools/Skyline/TestFunctional/ModifyMoleculeTest.cs index 39a85fbb917..f6889fd44a4 100644 --- a/pwiz_tools/Skyline/TestFunctional/ModifyMoleculeTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ModifyMoleculeTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/Ms1SpectrumFilterTest.cs b/pwiz_tools/Skyline/TestFunctional/Ms1SpectrumFilterTest.cs index d48bf99f835..e4e429b0d5c 100644 --- a/pwiz_tools/Skyline/TestFunctional/Ms1SpectrumFilterTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/Ms1SpectrumFilterTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/MultiInjectCandidatePeakTest.cs b/pwiz_tools/Skyline/TestFunctional/MultiInjectCandidatePeakTest.cs index d611a5f399b..895c5cc6ece 100644 --- a/pwiz_tools/Skyline/TestFunctional/MultiInjectCandidatePeakTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/MultiInjectCandidatePeakTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/MultiInjectReplicatePivotTest.cs b/pwiz_tools/Skyline/TestFunctional/MultiInjectReplicatePivotTest.cs index 766c0b065be..a0c3bc3a43d 100644 --- a/pwiz_tools/Skyline/TestFunctional/MultiInjectReplicatePivotTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/MultiInjectReplicatePivotTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/MultiInjectRescoreTest.cs b/pwiz_tools/Skyline/TestFunctional/MultiInjectRescoreTest.cs index ac0c3e207fb..e5bec4091b3 100644 --- a/pwiz_tools/Skyline/TestFunctional/MultiInjectRescoreTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/MultiInjectRescoreTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/MultiInjectionReplicatesTest.cs b/pwiz_tools/Skyline/TestFunctional/MultiInjectionReplicatesTest.cs index 1af177b61a5..e1c5a73d0a9 100644 --- a/pwiz_tools/Skyline/TestFunctional/MultiInjectionReplicatesTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/MultiInjectionReplicatesTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/MultiSampleImportPeakBoundariesTest.cs b/pwiz_tools/Skyline/TestFunctional/MultiSampleImportPeakBoundariesTest.cs index 2cab33a909d..79597060506 100644 --- a/pwiz_tools/Skyline/TestFunctional/MultiSampleImportPeakBoundariesTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/MultiSampleImportPeakBoundariesTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/MultiSelectPeakAreaGraphTest.cs b/pwiz_tools/Skyline/TestFunctional/MultiSelectPeakAreaGraphTest.cs index 40f89b55be2..883616b2282 100644 --- a/pwiz_tools/Skyline/TestFunctional/MultiSelectPeakAreaGraphTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/MultiSelectPeakAreaGraphTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Yuval Boss , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/MultiSelectRetentionTimeTest.cs b/pwiz_tools/Skyline/TestFunctional/MultiSelectRetentionTimeTest.cs index e8dd36d5368..92ffc99aa27 100644 --- a/pwiz_tools/Skyline/TestFunctional/MultiSelectRetentionTimeTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/MultiSelectRetentionTimeTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Yuval Boss , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/NeutralLossLibraryTest.data/CD166_neutral_loss_test_small.sky b/pwiz_tools/Skyline/TestFunctional/NeutralLossLibraryTest.data/CD166_neutral_loss_test_small.sky index 61409611464..42e1a7d87d2 100644 --- a/pwiz_tools/Skyline/TestFunctional/NeutralLossLibraryTest.data/CD166_neutral_loss_test_small.sky +++ b/pwiz_tools/Skyline/TestFunctional/NeutralLossLibraryTest.data/CD166_neutral_loss_test_small.sky @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestFunctional/NeutralLossModificationDisplayTest.cs b/pwiz_tools/Skyline/TestFunctional/NeutralLossModificationDisplayTest.cs index deabf3aff3b..84cd6d50d97 100644 --- a/pwiz_tools/Skyline/TestFunctional/NeutralLossModificationDisplayTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/NeutralLossModificationDisplayTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/NewDocumentLoadLibrariesTest.cs b/pwiz_tools/Skyline/TestFunctional/NewDocumentLoadLibrariesTest.cs index d243f742c1f..deb858596b9 100644 --- a/pwiz_tools/Skyline/TestFunctional/NewDocumentLoadLibrariesTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/NewDocumentLoadLibrariesTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/NoQuantitativeTransitionsTest.cs b/pwiz_tools/Skyline/TestFunctional/NoQuantitativeTransitionsTest.cs index 07bfd364bf3..9f529330b43 100644 --- a/pwiz_tools/Skyline/TestFunctional/NoQuantitativeTransitionsTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/NoQuantitativeTransitionsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/NonLinearRegressionTest.cs b/pwiz_tools/Skyline/TestFunctional/NonLinearRegressionTest.cs index 3835e63165a..a99c9d73705 100644 --- a/pwiz_tools/Skyline/TestFunctional/NonLinearRegressionTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/NonLinearRegressionTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Max Horowitz-Gelb , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/NormalizeToCalibrationCurveTest.cs b/pwiz_tools/Skyline/TestFunctional/NormalizeToCalibrationCurveTest.cs index 5db4a497880..27ed82fded2 100644 --- a/pwiz_tools/Skyline/TestFunctional/NormalizeToCalibrationCurveTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/NormalizeToCalibrationCurveTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/OpenDocWithBackgroundProteomeTest.cs b/pwiz_tools/Skyline/TestFunctional/OpenDocWithBackgroundProteomeTest.cs index 9d62b5ac6db..d352ea19f7d 100644 --- a/pwiz_tools/Skyline/TestFunctional/OpenDocWithBackgroundProteomeTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/OpenDocWithBackgroundProteomeTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/OrderByReplicateAnnotationTest.cs b/pwiz_tools/Skyline/TestFunctional/OrderByReplicateAnnotationTest.cs index 3472a6dac22..62c514868aa 100644 --- a/pwiz_tools/Skyline/TestFunctional/OrderByReplicateAnnotationTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/OrderByReplicateAnnotationTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/PanoramaClientPublishTest.cs b/pwiz_tools/Skyline/TestFunctional/PanoramaClientPublishTest.cs index d0a8af8dd8c..b73a814dce8 100644 --- a/pwiz_tools/Skyline/TestFunctional/PanoramaClientPublishTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/PanoramaClientPublishTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Vagisha Sharma , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/PeakAreaPeptideGraphTest.cs b/pwiz_tools/Skyline/TestFunctional/PeakAreaPeptideGraphTest.cs index b752ecd2684..c7345af4471 100644 --- a/pwiz_tools/Skyline/TestFunctional/PeakAreaPeptideGraphTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/PeakAreaPeptideGraphTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/PeakAreaRelativeAbundanceGraphTest.cs b/pwiz_tools/Skyline/TestFunctional/PeakAreaRelativeAbundanceGraphTest.cs index 4cb9be3fcb5..7ef99b7f58c 100644 --- a/pwiz_tools/Skyline/TestFunctional/PeakAreaRelativeAbundanceGraphTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/PeakAreaRelativeAbundanceGraphTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Henry Sanford , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/PeakBoundaryCompareTest.cs b/pwiz_tools/Skyline/TestFunctional/PeakBoundaryCompareTest.cs index dc5460dee61..c8bb6b3a49c 100644 --- a/pwiz_tools/Skyline/TestFunctional/PeakBoundaryCompareTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/PeakBoundaryCompareTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Dario Amodei , * Mallick Lab, Department of Radiology, Stanford University * diff --git a/pwiz_tools/Skyline/TestFunctional/PeakImputationImportTest.cs b/pwiz_tools/Skyline/TestFunctional/PeakImputationImportTest.cs index d58a6778fd9..66b3094524d 100644 --- a/pwiz_tools/Skyline/TestFunctional/PeakImputationImportTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/PeakImputationImportTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/PeakImputationRescoreTest.cs b/pwiz_tools/Skyline/TestFunctional/PeakImputationRescoreTest.cs index 72237343fd1..91bf1f4b2fe 100644 --- a/pwiz_tools/Skyline/TestFunctional/PeakImputationRescoreTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/PeakImputationRescoreTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/PeakImputationTest.cs b/pwiz_tools/Skyline/TestFunctional/PeakImputationTest.cs index 13e9c50e926..ba730be22b4 100644 --- a/pwiz_tools/Skyline/TestFunctional/PeakImputationTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/PeakImputationTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/PeakImputationWithBatchesTest.cs b/pwiz_tools/Skyline/TestFunctional/PeakImputationWithBatchesTest.cs index a0e9076a953..c912b70bf92 100644 --- a/pwiz_tools/Skyline/TestFunctional/PeakImputationWithBatchesTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/PeakImputationWithBatchesTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/PeakMetricsTest.cs b/pwiz_tools/Skyline/TestFunctional/PeakMetricsTest.cs index 4ff482b65f5..259cbf382df 100644 --- a/pwiz_tools/Skyline/TestFunctional/PeakMetricsTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/PeakMetricsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/PeakScoringModelTest.cs b/pwiz_tools/Skyline/TestFunctional/PeakScoringModelTest.cs index 98d21852c31..869f6b29d5c 100644 --- a/pwiz_tools/Skyline/TestFunctional/PeakScoringModelTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/PeakScoringModelTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/PeptideSettingsTooltipTest.cs b/pwiz_tools/Skyline/TestFunctional/PeptideSettingsTooltipTest.cs index d986f5f9a4a..12294dbabdb 100644 --- a/pwiz_tools/Skyline/TestFunctional/PeptideSettingsTooltipTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/PeptideSettingsTooltipTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/PermuteIsotopeModificationsTest.cs b/pwiz_tools/Skyline/TestFunctional/PermuteIsotopeModificationsTest.cs index 4040d1eb906..e545486513b 100644 --- a/pwiz_tools/Skyline/TestFunctional/PermuteIsotopeModificationsTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/PermuteIsotopeModificationsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/PivotEditorTest.cs b/pwiz_tools/Skyline/TestFunctional/PivotEditorTest.cs index 3b26da7c79a..230044ed9f8 100644 --- a/pwiz_tools/Skyline/TestFunctional/PivotEditorTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/PivotEditorTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/PrmAcquisitionMethodTest.cs b/pwiz_tools/Skyline/TestFunctional/PrmAcquisitionMethodTest.cs index 51d7ae89837..e620b62e720 100644 --- a/pwiz_tools/Skyline/TestFunctional/PrmAcquisitionMethodTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/PrmAcquisitionMethodTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/PrmCeOptimizationTest.cs b/pwiz_tools/Skyline/TestFunctional/PrmCeOptimizationTest.cs index 07907d6a865..47d77516dca 100644 --- a/pwiz_tools/Skyline/TestFunctional/PrmCeOptimizationTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/PrmCeOptimizationTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ProfileImport.cs b/pwiz_tools/Skyline/TestFunctional/ProfileImport.cs index 96d5ff97cb5..36cc3df43c0 100644 --- a/pwiz_tools/Skyline/TestFunctional/ProfileImport.cs +++ b/pwiz_tools/Skyline/TestFunctional/ProfileImport.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ProfileMemory.cs b/pwiz_tools/Skyline/TestFunctional/ProfileMemory.cs index b87083c41a6..6eb1f864840 100644 --- a/pwiz_tools/Skyline/TestFunctional/ProfileMemory.cs +++ b/pwiz_tools/Skyline/TestFunctional/ProfileMemory.cs @@ -1,4 +1,4 @@ -using System.Collections.Generic; +using System.Collections.Generic; using Microsoft.VisualStudio.TestTools.UnitTesting; using pwiz.SkylineTestUtil; diff --git a/pwiz_tools/Skyline/TestFunctional/Properties/AssemblyInfo.cs b/pwiz_tools/Skyline/TestFunctional/Properties/AssemblyInfo.cs index e624ed271b6..880f34de27a 100644 --- a/pwiz_tools/Skyline/TestFunctional/Properties/AssemblyInfo.cs +++ b/pwiz_tools/Skyline/TestFunctional/Properties/AssemblyInfo.cs @@ -1,4 +1,4 @@ -using System.Reflection; +using System.Reflection; using System.Runtime.InteropServices; // General Information about an assembly is controlled through the following diff --git a/pwiz_tools/Skyline/TestFunctional/PropertyGridTest.data/files-tree-expected-props.json b/pwiz_tools/Skyline/TestFunctional/PropertyGridTest.data/files-tree-expected-props.json new file mode 100644 index 00000000000..3a732caaf0c --- /dev/null +++ b/pwiz_tools/Skyline/TestFunctional/PropertyGridTest.data/files-tree-expected-props.json @@ -0,0 +1,19 @@ +{ + "Replicate": { + "Name": "D_102_REP1", + "SampleType": "Unknown", + "AnalyteConcentration": "" + }, + "SpectralLibrary": { + "Name": "NoDatafileExample", + "DataFiles": "0", + "LibraryType": "BiblioSpec Library", + "FilePath": "C:\\Users\\acban\\proj\\pwiz\\pwiz_tools\\Skyline\\SkylineTester Results\\PropertyGridTest\\rat_cmp_20.blib", + "LocalFilePath": "C:\\Users\\acban\\proj\\pwiz\\pwiz_tools\\Skyline\\SkylineTester Results\\PropertyGridTest\\rat_cmp_20.blib", + "SpectrumCount": "31", + "UniquePeptideCount": "31", + "Id": "urn:lsid:thegpm.org:spectral_libary:bibliospec:minimal:Rat (GPM):2987adca-f58a-4415-bfb8-5711491950b0:1.0", + "Revision": "1", + "Version": "0" + } +} \ No newline at end of file diff --git a/pwiz_tools/Skyline/TestFunctional/PropertyGridTest.data/sequence-tree-expected-props.json b/pwiz_tools/Skyline/TestFunctional/PropertyGridTest.data/sequence-tree-expected-props.json new file mode 100644 index 00000000000..5b9ef41235b --- /dev/null +++ b/pwiz_tools/Skyline/TestFunctional/PropertyGridTest.data/sequence-tree-expected-props.json @@ -0,0 +1,14 @@ +{ + "Peptide": { + "Sequence": "GILAADESVGSMAK", + "Protein": "NP_036629", + "ModifiedSequence": "GILAADESVGSMAK", + "StandardType": "", + "FirstPosition": "29", + "LastPosition": "42", + "MissedCleavages": "0", + "PredictedRetentionTime": "", + "AverageMeasuredRetentionTime": "19.9113597869873", + "Note": "" + } +} \ No newline at end of file diff --git a/pwiz_tools/Skyline/TestFunctional/PropertyGridTest.data/speclib-with-datafiles-expected-props.json b/pwiz_tools/Skyline/TestFunctional/PropertyGridTest.data/speclib-with-datafiles-expected-props.json new file mode 100644 index 00000000000..9825222911d --- /dev/null +++ b/pwiz_tools/Skyline/TestFunctional/PropertyGridTest.data/speclib-with-datafiles-expected-props.json @@ -0,0 +1,17 @@ +{ + "SpectralLibrary": { + "Name": "DatafileExample", + "DataFiles": "2", + "LibraryType": "BiblioSpec Library", + "FilePath": "C:\\Users\\acban\\proj\\pwiz\\pwiz_tools\\Skyline\\SkylineTester Results\\PropertyGridTest\\Ms1FilterTutorial.blib", + "LocalFilePath": "C:\\Users\\acban\\proj\\pwiz\\pwiz_tools\\Skyline\\SkylineTester Results\\PropertyGridTest\\Ms1FilterTutorial.blib", + "SpectrumCount": "552", + "TotalPsmCount": "813", + "UniquePeptideCount": "537", + "Id": "urn:lsid:proteome.gs.washington.edu:spectral_library:bibliospec:nr:Ms1FilterTutorial", + "Revision": "1", + "Version": "11", + "ScoreType": "ProteinPilot confidence", + "ScoreThreshold": "0" + } +} \ No newline at end of file diff --git a/pwiz_tools/Skyline/TestFunctional/PropertyGridTest.zip b/pwiz_tools/Skyline/TestFunctional/PropertyGridTest.zip new file mode 100644 index 00000000000..af0bd4c8371 Binary files /dev/null and b/pwiz_tools/Skyline/TestFunctional/PropertyGridTest.zip differ diff --git a/pwiz_tools/Skyline/TestFunctional/ProteinMetadataBackgroundLoaderTest.cs b/pwiz_tools/Skyline/TestFunctional/ProteinMetadataBackgroundLoaderTest.cs index a5022ccf0c5..2f81d37517d 100644 --- a/pwiz_tools/Skyline/TestFunctional/ProteinMetadataBackgroundLoaderTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ProteinMetadataBackgroundLoaderTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ProteinMetadataFunctionalTest.cs b/pwiz_tools/Skyline/TestFunctional/ProteinMetadataFunctionalTest.cs index 051cef53df1..cb9fd6a88df 100644 --- a/pwiz_tools/Skyline/TestFunctional/ProteinMetadataFunctionalTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ProteinMetadataFunctionalTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ProxlTest.cs b/pwiz_tools/Skyline/TestFunctional/ProxlTest.cs index 486286c0fa9..d70c50d7aa5 100644 --- a/pwiz_tools/Skyline/TestFunctional/ProxlTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ProxlTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/PythonInstallerLegacyDlgTest.cs b/pwiz_tools/Skyline/TestFunctional/PythonInstallerLegacyDlgTest.cs index ddaec534e47..8d7980c72a0 100644 --- a/pwiz_tools/Skyline/TestFunctional/PythonInstallerLegacyDlgTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/PythonInstallerLegacyDlgTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Trevor Killeen , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/QcTraceChromatogramTest.cs b/pwiz_tools/Skyline/TestFunctional/QcTraceChromatogramTest.cs index 304d6873d7a..8d8c5a1c4b5 100644 --- a/pwiz_tools/Skyline/TestFunctional/QcTraceChromatogramTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/QcTraceChromatogramTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/QcTraceNameTest.cs b/pwiz_tools/Skyline/TestFunctional/QcTraceNameTest.cs index cc47a2b8d3f..f100918fa61 100644 --- a/pwiz_tools/Skyline/TestFunctional/QcTraceNameTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/QcTraceNameTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/QualitativeIonRatioTest.cs b/pwiz_tools/Skyline/TestFunctional/QualitativeIonRatioTest.cs index a2f45a5b1fb..0d1dbcb1a0e 100644 --- a/pwiz_tools/Skyline/TestFunctional/QualitativeIonRatioTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/QualitativeIonRatioTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/QuantitativePeakAreaTest.cs b/pwiz_tools/Skyline/TestFunctional/QuantitativePeakAreaTest.cs index 8b7acff67f0..91ebae08f84 100644 --- a/pwiz_tools/Skyline/TestFunctional/QuantitativePeakAreaTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/QuantitativePeakAreaTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/QuantitativeTest.cs b/pwiz_tools/Skyline/TestFunctional/QuantitativeTest.cs index e481d0a496e..5b0e65dd351 100644 --- a/pwiz_tools/Skyline/TestFunctional/QuantitativeTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/QuantitativeTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/RInstallerTest.cs b/pwiz_tools/Skyline/TestFunctional/RInstallerTest.cs index 22ffa3837e5..edfab16b0d6 100644 --- a/pwiz_tools/Skyline/TestFunctional/RInstallerTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/RInstallerTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Trevor Killeen , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/RedundantComboBoxTest.cs b/pwiz_tools/Skyline/TestFunctional/RedundantComboBoxTest.cs index a3c167ef270..c81baf5d769 100644 --- a/pwiz_tools/Skyline/TestFunctional/RedundantComboBoxTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/RedundantComboBoxTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/RefineListDlgTest.cs b/pwiz_tools/Skyline/TestFunctional/RefineListDlgTest.cs index 0af44501174..ee20d453a44 100644 --- a/pwiz_tools/Skyline/TestFunctional/RefineListDlgTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/RefineListDlgTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/RefineProteinListDlgTest.cs b/pwiz_tools/Skyline/TestFunctional/RefineProteinListDlgTest.cs index 501b06f5732..8424c8aa9b7 100644 --- a/pwiz_tools/Skyline/TestFunctional/RefineProteinListDlgTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/RefineProteinListDlgTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Alex MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ReimportPeakBoundariesTest.cs b/pwiz_tools/Skyline/TestFunctional/ReimportPeakBoundariesTest.cs index 94e10f4ec0a..065a8f44545 100644 --- a/pwiz_tools/Skyline/TestFunctional/ReimportPeakBoundariesTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ReimportPeakBoundariesTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ReimportResultsTest.cs b/pwiz_tools/Skyline/TestFunctional/ReimportResultsTest.cs index 00797e917c7..402b3072d11 100644 --- a/pwiz_tools/Skyline/TestFunctional/ReimportResultsTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ReimportResultsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ReintegrateDlgTest.cs b/pwiz_tools/Skyline/TestFunctional/ReintegrateDlgTest.cs index 35a9f5d28cf..ec38ac323ea 100644 --- a/pwiz_tools/Skyline/TestFunctional/ReintegrateDlgTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ReintegrateDlgTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Dario Amodei , * Mallick Lab, Department of Radiology, Stanford * diff --git a/pwiz_tools/Skyline/TestFunctional/RemoveAnnotationTest.cs b/pwiz_tools/Skyline/TestFunctional/RemoveAnnotationTest.cs index fccb8ef2170..ed46214fc35 100644 --- a/pwiz_tools/Skyline/TestFunctional/RemoveAnnotationTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/RemoveAnnotationTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/RemoveHeavyModificationTest.cs b/pwiz_tools/Skyline/TestFunctional/RemoveHeavyModificationTest.cs index 35a60401b10..aed35396f10 100644 --- a/pwiz_tools/Skyline/TestFunctional/RemoveHeavyModificationTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/RemoveHeavyModificationTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/RemoveNeutralLossModificationTest.cs b/pwiz_tools/Skyline/TestFunctional/RemoveNeutralLossModificationTest.cs index b56bb8330c5..d174ed91209 100644 --- a/pwiz_tools/Skyline/TestFunctional/RemoveNeutralLossModificationTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/RemoveNeutralLossModificationTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/RemovePrefixSuffixTest.cs b/pwiz_tools/Skyline/TestFunctional/RemovePrefixSuffixTest.cs index 35f20ec438c..ad9e776badd 100644 --- a/pwiz_tools/Skyline/TestFunctional/RemovePrefixSuffixTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/RemovePrefixSuffixTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Simon MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/RemoveSmallMoleculeLabelTypeTest.cs b/pwiz_tools/Skyline/TestFunctional/RemoveSmallMoleculeLabelTypeTest.cs index 922c47207bd..9bebf68ecc5 100644 --- a/pwiz_tools/Skyline/TestFunctional/RemoveSmallMoleculeLabelTypeTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/RemoveSmallMoleculeLabelTypeTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/RenameMoleculeTest.cs b/pwiz_tools/Skyline/TestFunctional/RenameMoleculeTest.cs index 42ff9628995..0b5b83fa332 100644 --- a/pwiz_tools/Skyline/TestFunctional/RenameMoleculeTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/RenameMoleculeTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/RenameProteinsTest.cs b/pwiz_tools/Skyline/TestFunctional/RenameProteinsTest.cs index 59c1a77522c..1ebac73e244 100644 --- a/pwiz_tools/Skyline/TestFunctional/RenameProteinsTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/RenameProteinsTest.cs @@ -1,4 +1,4 @@ -using System.IO; +using System.IO; using System.Linq; using Microsoft.VisualStudio.TestTools.UnitTesting; using pwiz.Skyline.Alerts; diff --git a/pwiz_tools/Skyline/TestFunctional/ReplicateNameMetadataRuleTest.cs b/pwiz_tools/Skyline/TestFunctional/ReplicateNameMetadataRuleTest.cs index fe94db80a65..2fa1db2f3a1 100644 --- a/pwiz_tools/Skyline/TestFunctional/ReplicateNameMetadataRuleTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ReplicateNameMetadataRuleTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ReplicatePivotColumnsTest.cs b/pwiz_tools/Skyline/TestFunctional/ReplicatePivotColumnsTest.cs index 88f64a1650f..d1160fd263e 100644 --- a/pwiz_tools/Skyline/TestFunctional/ReplicatePivotColumnsTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ReplicatePivotColumnsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ReplicatePivotGridTest.cs b/pwiz_tools/Skyline/TestFunctional/ReplicatePivotGridTest.cs index 35196dba167..d8c7847403e 100644 --- a/pwiz_tools/Skyline/TestFunctional/ReplicatePivotGridTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ReplicatePivotGridTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Eduardo Armendariz , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ReportErrorDlgTest.cs b/pwiz_tools/Skyline/TestFunctional/ReportErrorDlgTest.cs index 9657487dad4..4157fe82e4b 100644 --- a/pwiz_tools/Skyline/TestFunctional/ReportErrorDlgTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ReportErrorDlgTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Yuval Boss , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ReportSharingTest.cs b/pwiz_tools/Skyline/TestFunctional/ReportSharingTest.cs index 8353894ed72..1a924eaff68 100644 --- a/pwiz_tools/Skyline/TestFunctional/ReportSharingTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ReportSharingTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ReporterIonTest.cs b/pwiz_tools/Skyline/TestFunctional/ReporterIonTest.cs index c3e7d206110..21ded835d9a 100644 --- a/pwiz_tools/Skyline/TestFunctional/ReporterIonTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ReporterIonTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/RescoreImportDocumentTest.cs b/pwiz_tools/Skyline/TestFunctional/RescoreImportDocumentTest.cs index d45e0bd6e25..9f7ae30637e 100644 --- a/pwiz_tools/Skyline/TestFunctional/RescoreImportDocumentTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/RescoreImportDocumentTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/RescoreInPlaceTest.cs b/pwiz_tools/Skyline/TestFunctional/RescoreInPlaceTest.cs index 603eb3843ff..14802335c2b 100644 --- a/pwiz_tools/Skyline/TestFunctional/RescoreInPlaceTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/RescoreInPlaceTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/RescoreRawChromatogramsTest.cs b/pwiz_tools/Skyline/TestFunctional/RescoreRawChromatogramsTest.cs index bd78ef7db1a..1a244901865 100644 --- a/pwiz_tools/Skyline/TestFunctional/RescoreRawChromatogramsTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/RescoreRawChromatogramsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/RescoreSimultaneousTest.cs b/pwiz_tools/Skyline/TestFunctional/RescoreSimultaneousTest.cs index 3aceef62ff0..93d5fa2deb1 100644 --- a/pwiz_tools/Skyline/TestFunctional/RescoreSimultaneousTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/RescoreSimultaneousTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ResultFileMetadataBackCompatTest.cs b/pwiz_tools/Skyline/TestFunctional/ResultFileMetadataBackCompatTest.cs index 0f3fe51f7a5..a694cab370a 100644 --- a/pwiz_tools/Skyline/TestFunctional/ResultFileMetadataBackCompatTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ResultFileMetadataBackCompatTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/RetentionTimeAlignmentTest.cs b/pwiz_tools/Skyline/TestFunctional/RetentionTimeAlignmentTest.cs index 187c2f45b31..c54131c9589 100644 --- a/pwiz_tools/Skyline/TestFunctional/RetentionTimeAlignmentTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/RetentionTimeAlignmentTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/RetentionTimeFilterTest.cs b/pwiz_tools/Skyline/TestFunctional/RetentionTimeFilterTest.cs index 86e0f3beddd..25007077453 100644 --- a/pwiz_tools/Skyline/TestFunctional/RetentionTimeFilterTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/RetentionTimeFilterTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/RowActionsTest.cs b/pwiz_tools/Skyline/TestFunctional/RowActionsTest.cs index 9e6ad6bf419..02037c72e19 100644 --- a/pwiz_tools/Skyline/TestFunctional/RowActionsTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/RowActionsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/RunToRunAlignmentTest.cs b/pwiz_tools/Skyline/TestFunctional/RunToRunAlignmentTest.cs index a1f493c1e9b..cd791a63ecb 100644 --- a/pwiz_tools/Skyline/TestFunctional/RunToRunAlignmentTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/RunToRunAlignmentTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/RunToRunRegressionTest.cs b/pwiz_tools/Skyline/TestFunctional/RunToRunRegressionTest.cs index 0fa87ade715..7352c89d56a 100644 --- a/pwiz_tools/Skyline/TestFunctional/RunToRunRegressionTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/RunToRunRegressionTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Max Horowitz-Gelb , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/SaveAfterProteinAssociationTest.cs b/pwiz_tools/Skyline/TestFunctional/SaveAfterProteinAssociationTest.cs index 8c48ceb1777..db35a261b53 100644 --- a/pwiz_tools/Skyline/TestFunctional/SaveAfterProteinAssociationTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/SaveAfterProteinAssociationTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2022 University of Washington - Seattle, WA diff --git a/pwiz_tools/Skyline/TestFunctional/SaveAsPreviousVersionTest.cs b/pwiz_tools/Skyline/TestFunctional/SaveAsPreviousVersionTest.cs index eb588f20352..eeddfa3fcb9 100644 --- a/pwiz_tools/Skyline/TestFunctional/SaveAsPreviousVersionTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/SaveAsPreviousVersionTest.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.IO; using System.Linq; using System.Xml; diff --git a/pwiz_tools/Skyline/TestFunctional/ScheduleMethodDlgTest.cs b/pwiz_tools/Skyline/TestFunctional/ScheduleMethodDlgTest.cs index a5f81329d60..da99d3da0cc 100644 --- a/pwiz_tools/Skyline/TestFunctional/ScheduleMethodDlgTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ScheduleMethodDlgTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Mimi Fung , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ScientificNotationGraphsTest.cs b/pwiz_tools/Skyline/TestFunctional/ScientificNotationGraphsTest.cs index 5278e13a72e..4f6f21d1e67 100644 --- a/pwiz_tools/Skyline/TestFunctional/ScientificNotationGraphsTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ScientificNotationGraphsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Alex MacLean <>, * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/SelectSpectrumTest.cs b/pwiz_tools/Skyline/TestFunctional/SelectSpectrumTest.cs index 732bff045c3..d01c04cd89d 100644 --- a/pwiz_tools/Skyline/TestFunctional/SelectSpectrumTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/SelectSpectrumTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/SequenceTreeExpandCollapseTest.cs b/pwiz_tools/Skyline/TestFunctional/SequenceTreeExpandCollapseTest.cs index 1cd4cbbe846..0bd722e3291 100644 --- a/pwiz_tools/Skyline/TestFunctional/SequenceTreeExpandCollapseTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/SequenceTreeExpandCollapseTest.cs @@ -1,4 +1,4 @@ -using System.Linq; +using System.Linq; using Microsoft.VisualStudio.TestTools.UnitTesting; using pwiz.Skyline.Alerts; using pwiz.Skyline.Controls; diff --git a/pwiz_tools/Skyline/TestFunctional/SequenceTreePropertyGridTest.cs b/pwiz_tools/Skyline/TestFunctional/SequenceTreePropertyGridTest.cs new file mode 100644 index 00000000000..2323213d52c --- /dev/null +++ b/pwiz_tools/Skyline/TestFunctional/SequenceTreePropertyGridTest.cs @@ -0,0 +1,144 @@ +/* + * Original author: Aaron Banse , + * MacCoss Lab, Department of Genome Sciences, UW + * + * Copyright 2025 University of Washington - Seattle, WA + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ + +using Microsoft.VisualStudio.TestTools.UnitTesting; +using pwiz.Skyline.Controls; +using pwiz.Skyline.Controls.SeqNode; +using pwiz.Skyline.Model.DocSettings; +using pwiz.SkylineTestUtil; +using System.Collections.Generic; +using System.ComponentModel; +using System.IO; +using System.Linq; +using Peptide = pwiz.Skyline.Model.Databinding.Entities.Peptide; + +namespace pwiz.SkylineTestFunctional +{ + [TestClass] + public class SequenceTreePropertyGridTest : AbstractFunctionalTest + { + private const int PEPTIDE_EXPECTED_PROP_NUM = 10; + private const string NOTE_PROP_NAME = "Note"; + private const string SEQUENCE_TREE_EXPECTED_PROPS_PREFIX = "sequence-tree"; + + private Dictionary> _expectedProperties; + + protected override bool IsRecordMode => false; + + [TestMethod] + public void TestSequenceTreePropertyGrid() + { + TestFilesZipPaths = new[] { PropertyGridTestUtil.TEST_FILES_ZIP }; + + RunFunctionalTest(); + } + + protected override void DoTest() + { + Setup(Path.Combine(TestFilesDirs[0].FullPath, @"Rat_plasma.sky")); + + _expectedProperties = PropertyGridTestUtil.ReadAllExpectedPropertyValues(SEQUENCE_TREE_EXPECTED_PROPS_PREFIX, IsRecordMode); + + // Test each data object if they display expected properties + TestPeptideProperties(); + + if (IsRecordMode) PropertyGridTestUtil.WriteAllExpectedPropertyValues(SEQUENCE_TREE_EXPECTED_PROPS_PREFIX, _expectedProperties); + + // Test annotation properties and editing + TestAnnotationProperties(); + TestEditProperty(); + + CloseForms(); + } + + private static void Setup(string documentPath) + { + RunUI(() => SkylineWindow.OpenFile(documentPath)); + + RunUI(() => { SkylineWindow.ShowSequenceTreeForm(true); }); + WaitForConditionUI(() => SkylineWindow.SequenceTreeFormIsVisible); + + RunUI(() => { SkylineWindow.ShowPropertyGridForm(true); }); + WaitForConditionUI(() => SkylineWindow.PropertyGridFormIsVisible); + } + + private void TestPeptideProperties() + { + // select peptide node + var peptideGroupTreeNode = SkylineWindow.SequenceTree.GetSequenceNodes().FirstOrDefault(); + Assert.IsNotNull(peptideGroupTreeNode); + var peptideTreeNode = peptideGroupTreeNode.Nodes[0] as PeptideTreeNode; + Assert.IsNotNull(peptideTreeNode); + RunUI(() => { SkylineWindow.SequenceTree.SelectedNode = peptideTreeNode; }); + + PropertyGridTestUtil.LogOrTestExpectedPropertyValues(SkylineWindow, _expectedProperties, nameof(Peptide), IsRecordMode); + } + + private static void TestAnnotationProperties() + { + // select peptide node + var peptideGroupTreeNode = SkylineWindow.SequenceTree.GetSequenceNodes().FirstOrDefault(); + Assert.IsNotNull(peptideGroupTreeNode); + var peptideTreeNode = peptideGroupTreeNode.Nodes[0] as PeptideTreeNode; + Assert.IsNotNull(peptideTreeNode); + RunUI(() => { SkylineWindow.SequenceTree.SelectedNode = peptideTreeNode; }); + + // Get selected node and ensure it is a peptide + var selectedObject = SkylineWindow.PropertyGridForm.GetPropertyObject(); + Assert.IsTrue(selectedObject is Peptide); + + // Add annotation definitions for peptides + RunUI(() => { PropertyGridTestUtil.TestAddAnnotations(SkylineWindow, AnnotationDef.AnnotationTarget.peptide); }); + + // Test if sum of original properties and new annotation definition properties appear + selectedObject = SkylineWindow.PropertyGridForm.GetPropertyObject(); + var props = TypeDescriptor.GetProperties(selectedObject, false); + Assert.AreEqual(PEPTIDE_EXPECTED_PROP_NUM + SkylineWindow.Document.Settings.DataSettings.AnnotationDefs.Count, props.Count); + + // Test editing the annotation properties + RunUI(() => { PropertyGridTestUtil.TestEditAnnotations(SkylineWindow); }); + } + + private static void TestEditProperty() + { + // Select Peptide node + var peptideGroupTreeNode = SkylineWindow.SequenceTree.GetSequenceNodes().FirstOrDefault(); + Assert.IsNotNull(peptideGroupTreeNode); + var peptideTreeNode = peptideGroupTreeNode.Nodes[0] as PeptideTreeNode; + Assert.IsNotNull(peptideTreeNode); + RunUI(() => { SkylineWindow.SequenceTree.SelectedNode = peptideTreeNode; }); + var selectedObject = SkylineWindow.PropertyGridForm.GetPropertyObject(); + Assert.IsTrue(selectedObject is Peptide); + + // Edit the note property of the selected object (peptide) and verify the change was made on the object and UI + RunUI(() => { PropertyGridTestUtil.TestEditProperty(SkylineWindow, NOTE_PROP_NAME, "EditedNote"); }); + } + + private static void CloseForms() + { + var sequenceTreeForm = FindOpenForm(); + Assert.IsNotNull(sequenceTreeForm); + OkDialog(sequenceTreeForm, sequenceTreeForm.Close); + + var propertyGridForm = FindOpenForm(); + Assert.IsNotNull(propertyGridForm); + OkDialog(propertyGridForm, propertyGridForm.Close); + } + } +} diff --git a/pwiz_tools/Skyline/TestFunctional/SequenceTreeRatioTest.cs b/pwiz_tools/Skyline/TestFunctional/SequenceTreeRatioTest.cs index 54e646e438c..9782c887db9 100644 --- a/pwiz_tools/Skyline/TestFunctional/SequenceTreeRatioTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/SequenceTreeRatioTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/SettingsChangeReimportTest.cs b/pwiz_tools/Skyline/TestFunctional/SettingsChangeReimportTest.cs index 3809ba4e1ec..f2a235bb598 100644 --- a/pwiz_tools/Skyline/TestFunctional/SettingsChangeReimportTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/SettingsChangeReimportTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ShareSettingsTest.cs b/pwiz_tools/Skyline/TestFunctional/ShareSettingsTest.cs index 71396be2c29..af9d2ca0d85 100644 --- a/pwiz_tools/Skyline/TestFunctional/ShareSettingsTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ShareSettingsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Dario Amodei , * Mallick Lab, Department of Radiology, Stanford * diff --git a/pwiz_tools/Skyline/TestFunctional/SimpleRatiosTest.cs b/pwiz_tools/Skyline/TestFunctional/SimpleRatiosTest.cs index ca3298ad647..f7f201189f2 100644 --- a/pwiz_tools/Skyline/TestFunctional/SimpleRatiosTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/SimpleRatiosTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/SingleReplicateResponseCurveTest.cs b/pwiz_tools/Skyline/TestFunctional/SingleReplicateResponseCurveTest.cs index b4177858c8e..c201a0b3c75 100644 --- a/pwiz_tools/Skyline/TestFunctional/SingleReplicateResponseCurveTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/SingleReplicateResponseCurveTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/SkipZoomScansTest.cs b/pwiz_tools/Skyline/TestFunctional/SkipZoomScansTest.cs index 2e1a8271da9..d5179c3c126 100644 --- a/pwiz_tools/Skyline/TestFunctional/SkipZoomScansTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/SkipZoomScansTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/SkydFileModifiedTest.cs b/pwiz_tools/Skyline/TestFunctional/SkydFileModifiedTest.cs index 1fe5de789df..9eae9f64923 100644 --- a/pwiz_tools/Skyline/TestFunctional/SkydFileModifiedTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/SkydFileModifiedTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/SkylineCmdTest.cs b/pwiz_tools/Skyline/TestFunctional/SkylineCmdTest.cs index 5e7f53237cf..8dcb99b2810 100644 --- a/pwiz_tools/Skyline/TestFunctional/SkylineCmdTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/SkylineCmdTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/SkylineMenuTest.cs b/pwiz_tools/Skyline/TestFunctional/SkylineMenuTest.cs index c2c5a6d825b..a640a9eaa73 100644 --- a/pwiz_tools/Skyline/TestFunctional/SkylineMenuTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/SkylineMenuTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/SkylineWindowEventsTest.cs b/pwiz_tools/Skyline/TestFunctional/SkylineWindowEventsTest.cs index f4b5f5d70da..c042d2e82f5 100644 --- a/pwiz_tools/Skyline/TestFunctional/SkylineWindowEventsTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/SkylineWindowEventsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2025 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Skyline/TestFunctional/SkypTest.cs b/pwiz_tools/Skyline/TestFunctional/SkypTest.cs index 3346d5984aa..c7e5a4557be 100644 --- a/pwiz_tools/Skyline/TestFunctional/SkypTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/SkypTest.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections.Generic; using System.IO; using System.Net; diff --git a/pwiz_tools/Skyline/TestFunctional/SmallMoleculeIrtTest.cs b/pwiz_tools/Skyline/TestFunctional/SmallMoleculeIrtTest.cs index 184c759806e..9d0543f1036 100644 --- a/pwiz_tools/Skyline/TestFunctional/SmallMoleculeIrtTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/SmallMoleculeIrtTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/SmallMoleculesDocumentGridTest.cs b/pwiz_tools/Skyline/TestFunctional/SmallMoleculesDocumentGridTest.cs index 699dd7817cb..b87c69da43e 100644 --- a/pwiz_tools/Skyline/TestFunctional/SmallMoleculesDocumentGridTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/SmallMoleculesDocumentGridTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/SpectrumGridTest.cs b/pwiz_tools/Skyline/TestFunctional/SpectrumGridTest.cs index 59991608905..00144ad1d6d 100644 --- a/pwiz_tools/Skyline/TestFunctional/SpectrumGridTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/SpectrumGridTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/SpectrumRetentionTimeAlignmentTest.cs b/pwiz_tools/Skyline/TestFunctional/SpectrumRetentionTimeAlignmentTest.cs index 6f60e98e54a..386638e86d4 100644 --- a/pwiz_tools/Skyline/TestFunctional/SpectrumRetentionTimeAlignmentTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/SpectrumRetentionTimeAlignmentTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/SplitGraphTest.cs b/pwiz_tools/Skyline/TestFunctional/SplitGraphTest.cs index 370bf9daebe..2376d7f9fb3 100644 --- a/pwiz_tools/Skyline/TestFunctional/SplitGraphTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/SplitGraphTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/SrmCourseScenarioTest.cs b/pwiz_tools/Skyline/TestFunctional/SrmCourseScenarioTest.cs index 30b60af205c..51a8aa2c826 100644 --- a/pwiz_tools/Skyline/TestFunctional/SrmCourseScenarioTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/SrmCourseScenarioTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/SrmSmMolChromTest.cs b/pwiz_tools/Skyline/TestFunctional/SrmSmMolChromTest.cs index 97daadce6de..7695f1c6775 100644 --- a/pwiz_tools/Skyline/TestFunctional/SrmSmMolChromTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/SrmSmMolChromTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/StandardTypeTest.cs b/pwiz_tools/Skyline/TestFunctional/StandardTypeTest.cs index ec319ebf0b0..6a0ea5ddf39 100644 --- a/pwiz_tools/Skyline/TestFunctional/StandardTypeTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/StandardTypeTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/StartPageInsertTransitionListTest.cs b/pwiz_tools/Skyline/TestFunctional/StartPageInsertTransitionListTest.cs index 479424e34a4..4b25c17dc38 100644 --- a/pwiz_tools/Skyline/TestFunctional/StartPageInsertTransitionListTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/StartPageInsertTransitionListTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/StartPageTest.cs b/pwiz_tools/Skyline/TestFunctional/StartPageTest.cs index 7c058b417f7..7ee09a261c8 100644 --- a/pwiz_tools/Skyline/TestFunctional/StartPageTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/StartPageTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Yuval Boss , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/SummaryGraphLinePlotsTest.cs b/pwiz_tools/Skyline/TestFunctional/SummaryGraphLinePlotsTest.cs index a030e0343a2..14fd163eef6 100644 --- a/pwiz_tools/Skyline/TestFunctional/SummaryGraphLinePlotsTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/SummaryGraphLinePlotsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/SummaryGraphVisibilityTest.cs b/pwiz_tools/Skyline/TestFunctional/SummaryGraphVisibilityTest.cs index 932d62d8ed4..b3ab6fe79f5 100644 --- a/pwiz_tools/Skyline/TestFunctional/SummaryGraphVisibilityTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/SummaryGraphVisibilityTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/SureQuantAcquisitionMethodSettingTest.cs b/pwiz_tools/Skyline/TestFunctional/SureQuantAcquisitionMethodSettingTest.cs index 35c2a537b1e..7df2303ed6c 100644 --- a/pwiz_tools/Skyline/TestFunctional/SureQuantAcquisitionMethodSettingTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/SureQuantAcquisitionMethodSettingTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/SureQuantScanDescriptionTest.cs b/pwiz_tools/Skyline/TestFunctional/SureQuantScanDescriptionTest.cs index e06f438d212..65a2267b398 100644 --- a/pwiz_tools/Skyline/TestFunctional/SureQuantScanDescriptionTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/SureQuantScanDescriptionTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/SurrogateCalibrationCurveTest.cs b/pwiz_tools/Skyline/TestFunctional/SurrogateCalibrationCurveTest.cs index e87e26509f2..81188e47c5d 100644 --- a/pwiz_tools/Skyline/TestFunctional/SurrogateCalibrationCurveTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/SurrogateCalibrationCurveTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/SurrogateStandardTest.cs b/pwiz_tools/Skyline/TestFunctional/SurrogateStandardTest.cs index a9883df6a5a..98a01e79023 100644 --- a/pwiz_tools/Skyline/TestFunctional/SurrogateStandardTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/SurrogateStandardTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/SwathIsolationListsTest.cs b/pwiz_tools/Skyline/TestFunctional/SwathIsolationListsTest.cs index e46f8045dd8..9fd98ef4c59 100644 --- a/pwiz_tools/Skyline/TestFunctional/SwathIsolationListsTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/SwathIsolationListsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/SynchronizeSummaryZoomingTest.cs b/pwiz_tools/Skyline/TestFunctional/SynchronizeSummaryZoomingTest.cs index 75a53ab5233..6426c0c1c92 100644 --- a/pwiz_tools/Skyline/TestFunctional/SynchronizeSummaryZoomingTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/SynchronizeSummaryZoomingTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tobias Rohde , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/SynchronizedIntegrationTest.cs b/pwiz_tools/Skyline/TestFunctional/SynchronizedIntegrationTest.cs index 1c19bc0870a..546399730ac 100644 --- a/pwiz_tools/Skyline/TestFunctional/SynchronizedIntegrationTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/SynchronizedIntegrationTest.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections.Generic; using System.Linq; using Microsoft.VisualStudio.TestTools.UnitTesting; diff --git a/pwiz_tools/Skyline/TestFunctional/TargetRatiosTest.cs b/pwiz_tools/Skyline/TestFunctional/TargetRatiosTest.cs index 407cd290539..e37e0fac2e4 100644 --- a/pwiz_tools/Skyline/TestFunctional/TargetRatiosTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/TargetRatiosTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/TargetResolverTest.cs b/pwiz_tools/Skyline/TestFunctional/TargetResolverTest.cs index e685d4a85db..05f6422858a 100644 --- a/pwiz_tools/Skyline/TestFunctional/TargetResolverTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/TargetResolverTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/TestFunctional.csproj b/pwiz_tools/Skyline/TestFunctional/TestFunctional.csproj index e0e558aadbc..28d429e46ce 100644 --- a/pwiz_tools/Skyline/TestFunctional/TestFunctional.csproj +++ b/pwiz_tools/Skyline/TestFunctional/TestFunctional.csproj @@ -1,4 +1,4 @@ - + Debug @@ -175,6 +175,7 @@ + @@ -263,6 +264,7 @@ + diff --git a/pwiz_tools/Skyline/TestFunctional/TestPanoramaClient.cs b/pwiz_tools/Skyline/TestFunctional/TestPanoramaClient.cs index d8b22288bd5..338dd4631f4 100644 --- a/pwiz_tools/Skyline/TestFunctional/TestPanoramaClient.cs +++ b/pwiz_tools/Skyline/TestFunctional/TestPanoramaClient.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Sophie Pallanck , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/TestPeakAreaDotpGraph.cs b/pwiz_tools/Skyline/TestFunctional/TestPeakAreaDotpGraph.cs index 4162e4c0e72..b4b5dcab1e6 100644 --- a/pwiz_tools/Skyline/TestFunctional/TestPeakAreaDotpGraph.cs +++ b/pwiz_tools/Skyline/TestFunctional/TestPeakAreaDotpGraph.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Globalization; using System.Linq; using Microsoft.VisualStudio.TestTools.UnitTesting; diff --git a/pwiz_tools/Skyline/TestFunctional/TicNormalizationTest.cs b/pwiz_tools/Skyline/TestFunctional/TicNormalizationTest.cs index b6266036a8c..2a1f45f6e8d 100644 --- a/pwiz_tools/Skyline/TestFunctional/TicNormalizationTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/TicNormalizationTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ToolServiceTest.cs b/pwiz_tools/Skyline/TestFunctional/ToolServiceTest.cs index d3cf9c7ee9f..b1b0f4ac2d4 100644 --- a/pwiz_tools/Skyline/TestFunctional/ToolServiceTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ToolServiceTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ToolServiceTestSharedClasses.cs b/pwiz_tools/Skyline/TestFunctional/ToolServiceTestSharedClasses.cs index 53d7e688b57..7cf861eb2ad 100644 --- a/pwiz_tools/Skyline/TestFunctional/ToolServiceTestSharedClasses.cs +++ b/pwiz_tools/Skyline/TestFunctional/ToolServiceTestSharedClasses.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ToolStoreDlgTest.cs b/pwiz_tools/Skyline/TestFunctional/ToolStoreDlgTest.cs index 76ad96caf2e..112ac6194cc 100644 --- a/pwiz_tools/Skyline/TestFunctional/ToolStoreDlgTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ToolStoreDlgTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Trevor Killeen , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ToolUpdatesTest.cs b/pwiz_tools/Skyline/TestFunctional/ToolUpdatesTest.cs index 64ce8a60f14..7a5bc6cfb3f 100644 --- a/pwiz_tools/Skyline/TestFunctional/ToolUpdatesTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ToolUpdatesTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Trevor Killeen , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/TransitionResultQuantitativeTest.cs b/pwiz_tools/Skyline/TestFunctional/TransitionResultQuantitativeTest.cs index 0aa0fbca74f..fd02946c6bb 100644 --- a/pwiz_tools/Skyline/TestFunctional/TransitionResultQuantitativeTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/TransitionResultQuantitativeTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/TreeRestorationTest.cs b/pwiz_tools/Skyline/TestFunctional/TreeRestorationTest.cs index 1ed24b0e669..3b68b3d01fc 100644 --- a/pwiz_tools/Skyline/TestFunctional/TreeRestorationTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/TreeRestorationTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Trevor Killeen , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/TriggeredAcquisitionTest.cs b/pwiz_tools/Skyline/TestFunctional/TriggeredAcquisitionTest.cs index a14fe1d7182..708aee9b3f7 100644 --- a/pwiz_tools/Skyline/TestFunctional/TriggeredAcquisitionTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/TriggeredAcquisitionTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/UIModeTest.cs b/pwiz_tools/Skyline/TestFunctional/UIModeTest.cs index a9482ccee17..ef13873537e 100644 --- a/pwiz_tools/Skyline/TestFunctional/UIModeTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/UIModeTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/UnalignedRetentionTimesTest.cs b/pwiz_tools/Skyline/TestFunctional/UnalignedRetentionTimesTest.cs index e8c58d540d0..210efd099e0 100644 --- a/pwiz_tools/Skyline/TestFunctional/UnalignedRetentionTimesTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/UnalignedRetentionTimesTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/UnreadableBlibTest.cs b/pwiz_tools/Skyline/TestFunctional/UnreadableBlibTest.cs index b4f0087e9fd..68522dcd20b 100644 --- a/pwiz_tools/Skyline/TestFunctional/UnreadableBlibTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/UnreadableBlibTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nick Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/UpdateAnnotationsGridTest.cs b/pwiz_tools/Skyline/TestFunctional/UpdateAnnotationsGridTest.cs index 877b5a8a12a..6051a24523a 100644 --- a/pwiz_tools/Skyline/TestFunctional/UpdateAnnotationsGridTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/UpdateAnnotationsGridTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/UpdateGlobalStandardTest.cs b/pwiz_tools/Skyline/TestFunctional/UpdateGlobalStandardTest.cs index 6a6261a6197..bfc7585e8f2 100644 --- a/pwiz_tools/Skyline/TestFunctional/UpdateGlobalStandardTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/UpdateGlobalStandardTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/UpgradeTest.cs b/pwiz_tools/Skyline/TestFunctional/UpgradeTest.cs index dbc2e4673a4..75716c49040 100644 --- a/pwiz_tools/Skyline/TestFunctional/UpgradeTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/UpgradeTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/VolcanoPlotFormattingTest.cs b/pwiz_tools/Skyline/TestFunctional/VolcanoPlotFormattingTest.cs index 265e02f32d2..9801a560d37 100644 --- a/pwiz_tools/Skyline/TestFunctional/VolcanoPlotFormattingTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/VolcanoPlotFormattingTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tobias Rohde , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ZedGraphClipboardTest.cs b/pwiz_tools/Skyline/TestFunctional/ZedGraphClipboardTest.cs index 18d5e4caf9c..b9f47d99672 100644 --- a/pwiz_tools/Skyline/TestFunctional/ZedGraphClipboardTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ZedGraphClipboardTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestFunctional/ZeroLengthSrmChromatogramTest.cs b/pwiz_tools/Skyline/TestFunctional/ZeroLengthSrmChromatogramTest.cs index fdf41700d18..77b950cc143 100644 --- a/pwiz_tools/Skyline/TestFunctional/ZeroLengthSrmChromatogramTest.cs +++ b/pwiz_tools/Skyline/TestFunctional/ZeroLengthSrmChromatogramTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestPerf/AcquisitionComparisonTutorialTest.cs b/pwiz_tools/Skyline/TestPerf/AcquisitionComparisonTutorialTest.cs index 79367b62e9b..c7dfaa6f3cd 100644 --- a/pwiz_tools/Skyline/TestPerf/AcquisitionComparisonTutorialTest.cs +++ b/pwiz_tools/Skyline/TestPerf/AcquisitionComparisonTutorialTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestPerf/AcquisitionComparisonViews.data/p04.view b/pwiz_tools/Skyline/TestPerf/AcquisitionComparisonViews.data/p04.view index 31e6b759e92..58d7ca72477 100644 --- a/pwiz_tools/Skyline/TestPerf/AcquisitionComparisonViews.data/p04.view +++ b/pwiz_tools/Skyline/TestPerf/AcquisitionComparisonViews.data/p04.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestPerf/AcquisitionComparisonViews.data/p11.view b/pwiz_tools/Skyline/TestPerf/AcquisitionComparisonViews.data/p11.view index cc2d4213194..afdb93d81fa 100644 --- a/pwiz_tools/Skyline/TestPerf/AcquisitionComparisonViews.data/p11.view +++ b/pwiz_tools/Skyline/TestPerf/AcquisitionComparisonViews.data/p11.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestPerf/AlphapeptdeepBuildLibraryTest.cs b/pwiz_tools/Skyline/TestPerf/AlphapeptdeepBuildLibraryTest.cs index 877c63deee6..af89af01ce9 100644 --- a/pwiz_tools/Skyline/TestPerf/AlphapeptdeepBuildLibraryTest.cs +++ b/pwiz_tools/Skyline/TestPerf/AlphapeptdeepBuildLibraryTest.cs @@ -1,4 +1,4 @@ -/* +/* * Author: David Shteynberg , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestPerf/AreaCVHistogramQValueAndRatioTest.cs b/pwiz_tools/Skyline/TestPerf/AreaCVHistogramQValueAndRatioTest.cs index 51315e8b8af..5a51a39326d 100644 --- a/pwiz_tools/Skyline/TestPerf/AreaCVHistogramQValueAndRatioTest.cs +++ b/pwiz_tools/Skyline/TestPerf/AreaCVHistogramQValueAndRatioTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tobias Rohde , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestPerf/BullseySharpTest.cs b/pwiz_tools/Skyline/TestPerf/BullseySharpTest.cs index fa6f61a501f..1eaf4c5334f 100644 --- a/pwiz_tools/Skyline/TestPerf/BullseySharpTest.cs +++ b/pwiz_tools/Skyline/TestPerf/BullseySharpTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt * * Copyright 2023 University of Washington - Seattle, WA diff --git a/pwiz_tools/Skyline/TestPerf/BullseyeSharpTest.cs b/pwiz_tools/Skyline/TestPerf/BullseyeSharpTest.cs index 2bf4ab577a7..1b9bc25832b 100644 --- a/pwiz_tools/Skyline/TestPerf/BullseyeSharpTest.cs +++ b/pwiz_tools/Skyline/TestPerf/BullseyeSharpTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt * * Copyright 2023 University of Washington - Seattle, WA diff --git a/pwiz_tools/Skyline/TestPerf/DdaTutorialTest.cs b/pwiz_tools/Skyline/TestPerf/DdaTutorialTest.cs index 5aca68f7fb2..fdbd4046ebc 100644 --- a/pwiz_tools/Skyline/TestPerf/DdaTutorialTest.cs +++ b/pwiz_tools/Skyline/TestPerf/DdaTutorialTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2020 University of Washington - Seattle, WA diff --git a/pwiz_tools/Skyline/TestPerf/DiaNnPeakImputationTest.cs b/pwiz_tools/Skyline/TestPerf/DiaNnPeakImputationTest.cs index a8983db47af..d0708366e42 100644 --- a/pwiz_tools/Skyline/TestPerf/DiaNnPeakImputationTest.cs +++ b/pwiz_tools/Skyline/TestPerf/DiaNnPeakImputationTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestPerf/DiaSearchTutorialTest.cs b/pwiz_tools/Skyline/TestPerf/DiaSearchTutorialTest.cs index 3f09b764dfc..1c5e2a541b1 100644 --- a/pwiz_tools/Skyline/TestPerf/DiaSearchTutorialTest.cs +++ b/pwiz_tools/Skyline/TestPerf/DiaSearchTutorialTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2020 University of Washington - Seattle, WA diff --git a/pwiz_tools/Skyline/TestPerf/DiaSwathPASEFViews.data/cover.view b/pwiz_tools/Skyline/TestPerf/DiaSwathPASEFViews.data/cover.view index b285898b9aa..1505ba27bac 100644 --- a/pwiz_tools/Skyline/TestPerf/DiaSwathPASEFViews.data/cover.view +++ b/pwiz_tools/Skyline/TestPerf/DiaSwathPASEFViews.data/cover.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestPerf/DiaSwathPASEFViews.data/p17.view b/pwiz_tools/Skyline/TestPerf/DiaSwathPASEFViews.data/p17.view index a8048b21fee..56364381cc1 100644 --- a/pwiz_tools/Skyline/TestPerf/DiaSwathPASEFViews.data/p17.view +++ b/pwiz_tools/Skyline/TestPerf/DiaSwathPASEFViews.data/p17.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestPerf/DiaSwathPASEFViews.data/p18.view b/pwiz_tools/Skyline/TestPerf/DiaSwathPASEFViews.data/p18.view index aadb097aa30..8f96cee4ff4 100644 --- a/pwiz_tools/Skyline/TestPerf/DiaSwathPASEFViews.data/p18.view +++ b/pwiz_tools/Skyline/TestPerf/DiaSwathPASEFViews.data/p18.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestPerf/DiaSwathPASEFViews.data/p24.view b/pwiz_tools/Skyline/TestPerf/DiaSwathPASEFViews.data/p24.view index b6063d59296..cbee900e2df 100644 --- a/pwiz_tools/Skyline/TestPerf/DiaSwathPASEFViews.data/p24.view +++ b/pwiz_tools/Skyline/TestPerf/DiaSwathPASEFViews.data/p24.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestPerf/DiaSwathPASEFViews.data/p27.view b/pwiz_tools/Skyline/TestPerf/DiaSwathPASEFViews.data/p27.view index eedeed5e808..fa620b6214e 100644 --- a/pwiz_tools/Skyline/TestPerf/DiaSwathPASEFViews.data/p27.view +++ b/pwiz_tools/Skyline/TestPerf/DiaSwathPASEFViews.data/p27.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestPerf/DiaSwathPASEFViews.data/p30.view b/pwiz_tools/Skyline/TestPerf/DiaSwathPASEFViews.data/p30.view index ee45df48672..369308c8480 100644 --- a/pwiz_tools/Skyline/TestPerf/DiaSwathPASEFViews.data/p30.view +++ b/pwiz_tools/Skyline/TestPerf/DiaSwathPASEFViews.data/p30.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestPerf/DiaSwathPASEFViews.data/p31.view b/pwiz_tools/Skyline/TestPerf/DiaSwathPASEFViews.data/p31.view index edbd5faee64..2467e98dcb4 100644 --- a/pwiz_tools/Skyline/TestPerf/DiaSwathPASEFViews.data/p31.view +++ b/pwiz_tools/Skyline/TestPerf/DiaSwathPASEFViews.data/p31.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestPerf/DiaSwathQEViews.data/cover.view b/pwiz_tools/Skyline/TestPerf/DiaSwathQEViews.data/cover.view index 39ab86f5413..6012c4969b7 100644 --- a/pwiz_tools/Skyline/TestPerf/DiaSwathQEViews.data/cover.view +++ b/pwiz_tools/Skyline/TestPerf/DiaSwathQEViews.data/cover.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestPerf/DiaSwathQEViews.data/p17.view b/pwiz_tools/Skyline/TestPerf/DiaSwathQEViews.data/p17.view index 6781f1a3d57..51a998bd74c 100644 --- a/pwiz_tools/Skyline/TestPerf/DiaSwathQEViews.data/p17.view +++ b/pwiz_tools/Skyline/TestPerf/DiaSwathQEViews.data/p17.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestPerf/DiaSwathQEViews.data/p18.view b/pwiz_tools/Skyline/TestPerf/DiaSwathQEViews.data/p18.view index 5dbce36a1ad..8affc04adcf 100644 --- a/pwiz_tools/Skyline/TestPerf/DiaSwathQEViews.data/p18.view +++ b/pwiz_tools/Skyline/TestPerf/DiaSwathQEViews.data/p18.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestPerf/DiaSwathQEViews.data/p24.view b/pwiz_tools/Skyline/TestPerf/DiaSwathQEViews.data/p24.view index 342e5d620be..6799ed01c84 100644 --- a/pwiz_tools/Skyline/TestPerf/DiaSwathQEViews.data/p24.view +++ b/pwiz_tools/Skyline/TestPerf/DiaSwathQEViews.data/p24.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestPerf/DiaSwathQEViews.data/p27.view b/pwiz_tools/Skyline/TestPerf/DiaSwathQEViews.data/p27.view index a169ffb7fe0..18a49c14ccd 100644 --- a/pwiz_tools/Skyline/TestPerf/DiaSwathQEViews.data/p27.view +++ b/pwiz_tools/Skyline/TestPerf/DiaSwathQEViews.data/p27.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestPerf/DiaSwathQEViews.data/p30.view b/pwiz_tools/Skyline/TestPerf/DiaSwathQEViews.data/p30.view index c464ec540cd..a75476ac79d 100644 --- a/pwiz_tools/Skyline/TestPerf/DiaSwathQEViews.data/p30.view +++ b/pwiz_tools/Skyline/TestPerf/DiaSwathQEViews.data/p30.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestPerf/DiaSwathQEViews.data/p31.view b/pwiz_tools/Skyline/TestPerf/DiaSwathQEViews.data/p31.view index 595799facc9..3009c13b1b1 100644 --- a/pwiz_tools/Skyline/TestPerf/DiaSwathQEViews.data/p31.view +++ b/pwiz_tools/Skyline/TestPerf/DiaSwathQEViews.data/p31.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestPerf/DiaSwathTTOFViews.data/cover.view b/pwiz_tools/Skyline/TestPerf/DiaSwathTTOFViews.data/cover.view index 98ace1ff301..36ed980d490 100644 --- a/pwiz_tools/Skyline/TestPerf/DiaSwathTTOFViews.data/cover.view +++ b/pwiz_tools/Skyline/TestPerf/DiaSwathTTOFViews.data/cover.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestPerf/DiaSwathTTOFViews.data/p17.view b/pwiz_tools/Skyline/TestPerf/DiaSwathTTOFViews.data/p17.view index 44f83aec70f..7bfa63402c2 100644 --- a/pwiz_tools/Skyline/TestPerf/DiaSwathTTOFViews.data/p17.view +++ b/pwiz_tools/Skyline/TestPerf/DiaSwathTTOFViews.data/p17.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestPerf/DiaSwathTTOFViews.data/p18.view b/pwiz_tools/Skyline/TestPerf/DiaSwathTTOFViews.data/p18.view index 5674bd6c371..b96de0aac68 100644 --- a/pwiz_tools/Skyline/TestPerf/DiaSwathTTOFViews.data/p18.view +++ b/pwiz_tools/Skyline/TestPerf/DiaSwathTTOFViews.data/p18.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestPerf/DiaSwathTTOFViews.data/p24.view b/pwiz_tools/Skyline/TestPerf/DiaSwathTTOFViews.data/p24.view index 41f2796efde..d83e91933f5 100644 --- a/pwiz_tools/Skyline/TestPerf/DiaSwathTTOFViews.data/p24.view +++ b/pwiz_tools/Skyline/TestPerf/DiaSwathTTOFViews.data/p24.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestPerf/DiaSwathTTOFViews.data/p27.view b/pwiz_tools/Skyline/TestPerf/DiaSwathTTOFViews.data/p27.view index f2a321c8290..a32b096e287 100644 --- a/pwiz_tools/Skyline/TestPerf/DiaSwathTTOFViews.data/p27.view +++ b/pwiz_tools/Skyline/TestPerf/DiaSwathTTOFViews.data/p27.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestPerf/DiaSwathTTOFViews.data/p30.view b/pwiz_tools/Skyline/TestPerf/DiaSwathTTOFViews.data/p30.view index 6b5a678dedb..4aa46df28fc 100644 --- a/pwiz_tools/Skyline/TestPerf/DiaSwathTTOFViews.data/p30.view +++ b/pwiz_tools/Skyline/TestPerf/DiaSwathTTOFViews.data/p30.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestPerf/DiaSwathTTOFViews.data/p31.view b/pwiz_tools/Skyline/TestPerf/DiaSwathTTOFViews.data/p31.view index 3508469ca83..21b47a12622 100644 --- a/pwiz_tools/Skyline/TestPerf/DiaSwathTTOFViews.data/p31.view +++ b/pwiz_tools/Skyline/TestPerf/DiaSwathTTOFViews.data/p31.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestPerf/EncyclopeDiaSearchTutorialTest.cs b/pwiz_tools/Skyline/TestPerf/EncyclopeDiaSearchTutorialTest.cs index 15f32b75881..42ecf85b9d9 100644 --- a/pwiz_tools/Skyline/TestPerf/EncyclopeDiaSearchTutorialTest.cs +++ b/pwiz_tools/Skyline/TestPerf/EncyclopeDiaSearchTutorialTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2022 University of Washington - Seattle, WA diff --git a/pwiz_tools/Skyline/TestPerf/FeatureDetectionTest.cs b/pwiz_tools/Skyline/TestPerf/FeatureDetectionTest.cs index ee3aa28cea4..d571ba28c81 100644 --- a/pwiz_tools/Skyline/TestPerf/FeatureDetectionTest.cs +++ b/pwiz_tools/Skyline/TestPerf/FeatureDetectionTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt * * Copyright 2022 University of Washington - Seattle, WA diff --git a/pwiz_tools/Skyline/TestPerf/HiResMetabolomicsTutorial.cs b/pwiz_tools/Skyline/TestPerf/HiResMetabolomicsTutorial.cs index bc922036b41..83744b0f051 100644 --- a/pwiz_tools/Skyline/TestPerf/HiResMetabolomicsTutorial.cs +++ b/pwiz_tools/Skyline/TestPerf/HiResMetabolomicsTutorial.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestPerf/HiResMetabolomicsViews.data/cover.view b/pwiz_tools/Skyline/TestPerf/HiResMetabolomicsViews.data/cover.view index ba215d235ef..1c80c8cf417 100644 --- a/pwiz_tools/Skyline/TestPerf/HiResMetabolomicsViews.data/cover.view +++ b/pwiz_tools/Skyline/TestPerf/HiResMetabolomicsViews.data/cover.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestPerf/HiResMetabolomicsViews.data/p05.view b/pwiz_tools/Skyline/TestPerf/HiResMetabolomicsViews.data/p05.view index ba99a7c01f6..c6cd71bd65e 100644 --- a/pwiz_tools/Skyline/TestPerf/HiResMetabolomicsViews.data/p05.view +++ b/pwiz_tools/Skyline/TestPerf/HiResMetabolomicsViews.data/p05.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestPerf/HiResMetabolomicsViews.data/p09.view b/pwiz_tools/Skyline/TestPerf/HiResMetabolomicsViews.data/p09.view index df3d9822ec8..460c8922da6 100644 --- a/pwiz_tools/Skyline/TestPerf/HiResMetabolomicsViews.data/p09.view +++ b/pwiz_tools/Skyline/TestPerf/HiResMetabolomicsViews.data/p09.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestPerf/HiResMetabolomicsViews.data/p14.view b/pwiz_tools/Skyline/TestPerf/HiResMetabolomicsViews.data/p14.view index 56d233e224b..7e1b8545bbd 100644 --- a/pwiz_tools/Skyline/TestPerf/HiResMetabolomicsViews.data/p14.view +++ b/pwiz_tools/Skyline/TestPerf/HiResMetabolomicsViews.data/p14.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestPerf/HiResMetabolomicsViews.data/p15.view b/pwiz_tools/Skyline/TestPerf/HiResMetabolomicsViews.data/p15.view index bbb3176a23e..e22fa7c9809 100644 --- a/pwiz_tools/Skyline/TestPerf/HiResMetabolomicsViews.data/p15.view +++ b/pwiz_tools/Skyline/TestPerf/HiResMetabolomicsViews.data/p15.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestPerf/ImportMassOnlyMoleculesTest.cs b/pwiz_tools/Skyline/TestPerf/ImportMassOnlyMoleculesTest.cs index 5e1855b9ad4..d598499b5d9 100644 --- a/pwiz_tools/Skyline/TestPerf/ImportMassOnlyMoleculesTest.cs +++ b/pwiz_tools/Skyline/TestPerf/ImportMassOnlyMoleculesTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestPerf/OrbiPrmViews.data/p17.view b/pwiz_tools/Skyline/TestPerf/OrbiPrmViews.data/p17.view index a503daa39b1..9029c5539b3 100644 --- a/pwiz_tools/Skyline/TestPerf/OrbiPrmViews.data/p17.view +++ b/pwiz_tools/Skyline/TestPerf/OrbiPrmViews.data/p17.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestPerf/OrbiPrmViews.data/p20.view b/pwiz_tools/Skyline/TestPerf/OrbiPrmViews.data/p20.view index 6157ce975f6..52b8031a02c 100644 --- a/pwiz_tools/Skyline/TestPerf/OrbiPrmViews.data/p20.view +++ b/pwiz_tools/Skyline/TestPerf/OrbiPrmViews.data/p20.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestPerf/OrbiPrmViews.data/p21.view b/pwiz_tools/Skyline/TestPerf/OrbiPrmViews.data/p21.view index 7cfdacc1d5c..8ab2df222b2 100644 --- a/pwiz_tools/Skyline/TestPerf/OrbiPrmViews.data/p21.view +++ b/pwiz_tools/Skyline/TestPerf/OrbiPrmViews.data/p21.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestPerf/OrbiPrmViews.data/p24.view b/pwiz_tools/Skyline/TestPerf/OrbiPrmViews.data/p24.view index 786589f72a2..7e67b8ae587 100644 --- a/pwiz_tools/Skyline/TestPerf/OrbiPrmViews.data/p24.view +++ b/pwiz_tools/Skyline/TestPerf/OrbiPrmViews.data/p24.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestPerf/OrbiPrmViews.data/p25.view b/pwiz_tools/Skyline/TestPerf/OrbiPrmViews.data/p25.view index 8b1900f8d44..c6e7d3e8d04 100644 --- a/pwiz_tools/Skyline/TestPerf/OrbiPrmViews.data/p25.view +++ b/pwiz_tools/Skyline/TestPerf/OrbiPrmViews.data/p25.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestPerf/OrbiPrmViews.data/p38.view b/pwiz_tools/Skyline/TestPerf/OrbiPrmViews.data/p38.view index 8839e42e029..04aa93f3737 100644 --- a/pwiz_tools/Skyline/TestPerf/OrbiPrmViews.data/p38.view +++ b/pwiz_tools/Skyline/TestPerf/OrbiPrmViews.data/p38.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestPerf/OrbiPrmViews.data/p39.view b/pwiz_tools/Skyline/TestPerf/OrbiPrmViews.data/p39.view index 89c9acceaba..69927bae505 100644 --- a/pwiz_tools/Skyline/TestPerf/OrbiPrmViews.data/p39.view +++ b/pwiz_tools/Skyline/TestPerf/OrbiPrmViews.data/p39.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestPerf/PerfAssociateProteinsHugeTest.cs b/pwiz_tools/Skyline/TestPerf/PerfAssociateProteinsHugeTest.cs index 73545c3f818..3291a2cc055 100644 --- a/pwiz_tools/Skyline/TestPerf/PerfAssociateProteinsHugeTest.cs +++ b/pwiz_tools/Skyline/TestPerf/PerfAssociateProteinsHugeTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2022 University of Washington - Seattle, WA diff --git a/pwiz_tools/Skyline/TestPerf/PerfAssociateProteinsTest.cs b/pwiz_tools/Skyline/TestPerf/PerfAssociateProteinsTest.cs index b0538c3c50f..84a6b82e27d 100644 --- a/pwiz_tools/Skyline/TestPerf/PerfAssociateProteinsTest.cs +++ b/pwiz_tools/Skyline/TestPerf/PerfAssociateProteinsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestPerf/PerfCreateLibraryFromSpectraTest.cs b/pwiz_tools/Skyline/TestPerf/PerfCreateLibraryFromSpectraTest.cs index da4c210be73..4f36f525485 100644 --- a/pwiz_tools/Skyline/TestPerf/PerfCreateLibraryFromSpectraTest.cs +++ b/pwiz_tools/Skyline/TestPerf/PerfCreateLibraryFromSpectraTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2024 University of Washington - Seattle, WA diff --git a/pwiz_tools/Skyline/TestPerf/PerfImportHundredsOfReplicatesTest.cs b/pwiz_tools/Skyline/TestPerf/PerfImportHundredsOfReplicatesTest.cs index 49e146c38a8..b4bad768afb 100644 --- a/pwiz_tools/Skyline/TestPerf/PerfImportHundredsOfReplicatesTest.cs +++ b/pwiz_tools/Skyline/TestPerf/PerfImportHundredsOfReplicatesTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestPerf/PerfMinimizeResultsTest.cs b/pwiz_tools/Skyline/TestPerf/PerfMinimizeResultsTest.cs index 49a3f067432..be5355014bd 100644 --- a/pwiz_tools/Skyline/TestPerf/PerfMinimizeResultsTest.cs +++ b/pwiz_tools/Skyline/TestPerf/PerfMinimizeResultsTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestPerf/PerfMs3ChromatogramTest.cs b/pwiz_tools/Skyline/TestPerf/PerfMs3ChromatogramTest.cs index df0f5aabf62..0d5ee732a75 100644 --- a/pwiz_tools/Skyline/TestPerf/PerfMs3ChromatogramTest.cs +++ b/pwiz_tools/Skyline/TestPerf/PerfMs3ChromatogramTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestPerf/PerfOpenSwathConvert.cs b/pwiz_tools/Skyline/TestPerf/PerfOpenSwathConvert.cs index cdc61a4a42c..e62460d351f 100644 --- a/pwiz_tools/Skyline/TestPerf/PerfOpenSwathConvert.cs +++ b/pwiz_tools/Skyline/TestPerf/PerfOpenSwathConvert.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Dario Amodei , * Mallick Lab, Department of Radiology, Stanford University * diff --git a/pwiz_tools/Skyline/TestPerf/PerfPeakTest.cs b/pwiz_tools/Skyline/TestPerf/PerfPeakTest.cs index 90eced1656a..408bc5469c6 100644 --- a/pwiz_tools/Skyline/TestPerf/PerfPeakTest.cs +++ b/pwiz_tools/Skyline/TestPerf/PerfPeakTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Dario Amodei , * Mallick Lab, Department of Radiology, Stanford University * diff --git a/pwiz_tools/Skyline/TestPerf/PerfPeakViewConvert.cs b/pwiz_tools/Skyline/TestPerf/PerfPeakViewConvert.cs index 187139ec4c1..f025091f28c 100644 --- a/pwiz_tools/Skyline/TestPerf/PerfPeakViewConvert.cs +++ b/pwiz_tools/Skyline/TestPerf/PerfPeakViewConvert.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Dario Amodei , * Mallick Lab, Department of Radiology, Stanford University * diff --git a/pwiz_tools/Skyline/TestPerf/PerfSciexPrmCeOptTest.cs b/pwiz_tools/Skyline/TestPerf/PerfSciexPrmCeOptTest.cs index f05a6bdc8c0..9aba89c17d2 100644 --- a/pwiz_tools/Skyline/TestPerf/PerfSciexPrmCeOptTest.cs +++ b/pwiz_tools/Skyline/TestPerf/PerfSciexPrmCeOptTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestPerf/PerfThermoFAIMSTest.cs b/pwiz_tools/Skyline/TestPerf/PerfThermoFAIMSTest.cs index e9719232b9b..1b4e3abfe04 100644 --- a/pwiz_tools/Skyline/TestPerf/PerfThermoFAIMSTest.cs +++ b/pwiz_tools/Skyline/TestPerf/PerfThermoFAIMSTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestPerf/PerfThermoNegativeFAIMSTest.cs b/pwiz_tools/Skyline/TestPerf/PerfThermoNegativeFAIMSTest.cs index dedc6995bdd..f36d13ba069 100644 --- a/pwiz_tools/Skyline/TestPerf/PerfThermoNegativeFAIMSTest.cs +++ b/pwiz_tools/Skyline/TestPerf/PerfThermoNegativeFAIMSTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestPerf/PerfThermoSureQuantFAIMSTest.cs b/pwiz_tools/Skyline/TestPerf/PerfThermoSureQuantFAIMSTest.cs index 7e50688c709..113dec2d111 100644 --- a/pwiz_tools/Skyline/TestPerf/PerfThermoSureQuantFAIMSTest.cs +++ b/pwiz_tools/Skyline/TestPerf/PerfThermoSureQuantFAIMSTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestPerf/PerfTicAreaTest.cs b/pwiz_tools/Skyline/TestPerf/PerfTicAreaTest.cs index 6ddfb96dc72..a789100cb6e 100644 --- a/pwiz_tools/Skyline/TestPerf/PerfTicAreaTest.cs +++ b/pwiz_tools/Skyline/TestPerf/PerfTicAreaTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestPerf/PerfUniquePeptidesTest.cs b/pwiz_tools/Skyline/TestPerf/PerfUniquePeptidesTest.cs index 8409aea7158..0baa60efd9b 100644 --- a/pwiz_tools/Skyline/TestPerf/PerfUniquePeptidesTest.cs +++ b/pwiz_tools/Skyline/TestPerf/PerfUniquePeptidesTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestPerf/PerfWatersSonarTest.cs b/pwiz_tools/Skyline/TestPerf/PerfWatersSonarTest.cs index 371c82f9807..0938792b329 100644 --- a/pwiz_tools/Skyline/TestPerf/PerfWatersSonarTest.cs +++ b/pwiz_tools/Skyline/TestPerf/PerfWatersSonarTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestPerf/SmallMolLibrariesTutorialTest.cs b/pwiz_tools/Skyline/TestPerf/SmallMolLibrariesTutorialTest.cs index 7498e6500b7..5d4679ce2b8 100644 --- a/pwiz_tools/Skyline/TestPerf/SmallMolLibrariesTutorialTest.cs +++ b/pwiz_tools/Skyline/TestPerf/SmallMolLibrariesTutorialTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestPerf/TestPerf.csproj b/pwiz_tools/Skyline/TestPerf/TestPerf.csproj index b08ced0ae4e..ee9bf4fb726 100644 --- a/pwiz_tools/Skyline/TestPerf/TestPerf.csproj +++ b/pwiz_tools/Skyline/TestPerf/TestPerf.csproj @@ -1,4 +1,4 @@ - + Debug diff --git a/pwiz_tools/Skyline/TestRunner/CommandLineArgs.cs b/pwiz_tools/Skyline/TestRunner/CommandLineArgs.cs index d2ee8ce219c..8343ed162cc 100644 --- a/pwiz_tools/Skyline/TestRunner/CommandLineArgs.cs +++ b/pwiz_tools/Skyline/TestRunner/CommandLineArgs.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestRunner/MemoryProfiler.cs b/pwiz_tools/Skyline/TestRunner/MemoryProfiler.cs index 8a35eed5979..7ea69ddc74a 100644 --- a/pwiz_tools/Skyline/TestRunner/MemoryProfiler.cs +++ b/pwiz_tools/Skyline/TestRunner/MemoryProfiler.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestRunner/Statistics.cs b/pwiz_tools/Skyline/TestRunner/Statistics.cs index 05387f99995..fbbc9538b1d 100644 --- a/pwiz_tools/Skyline/TestRunner/Statistics.cs +++ b/pwiz_tools/Skyline/TestRunner/Statistics.cs @@ -1,4 +1,4 @@ -using System; +using System; namespace TestRunner { diff --git a/pwiz_tools/Skyline/TestRunner/TestRunner.csproj b/pwiz_tools/Skyline/TestRunner/TestRunner.csproj index 235691fa2a6..2ab9a1a8137 100644 --- a/pwiz_tools/Skyline/TestRunner/TestRunner.csproj +++ b/pwiz_tools/Skyline/TestRunner/TestRunner.csproj @@ -1,4 +1,4 @@ - + Debug diff --git a/pwiz_tools/Skyline/TestRunner/TestRunner.csproj.DotSettings b/pwiz_tools/Skyline/TestRunner/TestRunner.csproj.DotSettings index 6e7fff86abe..928f1267f4e 100644 --- a/pwiz_tools/Skyline/TestRunner/TestRunner.csproj.DotSettings +++ b/pwiz_tools/Skyline/TestRunner/TestRunner.csproj.DotSettings @@ -1,2 +1,2 @@ - + No \ No newline at end of file diff --git a/pwiz_tools/Skyline/TestRunner/TestRunner.sln b/pwiz_tools/Skyline/TestRunner/TestRunner.sln index 20571a9b854..83cc1486953 100644 --- a/pwiz_tools/Skyline/TestRunner/TestRunner.sln +++ b/pwiz_tools/Skyline/TestRunner/TestRunner.sln @@ -1,4 +1,4 @@ - + Microsoft Visual Studio Solution File, Format Version 11.00 # Visual Studio 2010 Project("{FAE04EC0-301F-11D3-BF4B-00C04F79EFBC}") = "TestRunner", "TestRunner.csproj", "{B92CA24E-0867-4B99-88F8-EF542A4AFE87}" diff --git a/pwiz_tools/Skyline/TestRunner/UnusedPortFinder.cs b/pwiz_tools/Skyline/TestRunner/UnusedPortFinder.cs index 27f429568d1..4daeaa9980a 100644 --- a/pwiz_tools/Skyline/TestRunner/UnusedPortFinder.cs +++ b/pwiz_tools/Skyline/TestRunner/UnusedPortFinder.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestRunner/app.config b/pwiz_tools/Skyline/TestRunner/app.config index 7db023e7d73..c7ee06b3072 100644 --- a/pwiz_tools/Skyline/TestRunner/app.config +++ b/pwiz_tools/Skyline/TestRunner/app.config @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestRunner/app.manifest b/pwiz_tools/Skyline/TestRunner/app.manifest index 0672917506e..c422c084e25 100644 --- a/pwiz_tools/Skyline/TestRunner/app.manifest +++ b/pwiz_tools/Skyline/TestRunner/app.manifest @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestRunnerLib/FindLanguages.cs b/pwiz_tools/Skyline/TestRunnerLib/FindLanguages.cs index 20a46b49634..6fc0d40f7ee 100644 --- a/pwiz_tools/Skyline/TestRunnerLib/FindLanguages.cs +++ b/pwiz_tools/Skyline/TestRunnerLib/FindLanguages.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestRunnerLib/FormLookup.cs b/pwiz_tools/Skyline/TestRunnerLib/FormLookup.cs index 1eeb93c9639..21469c5178d 100644 --- a/pwiz_tools/Skyline/TestRunnerLib/FormLookup.cs +++ b/pwiz_tools/Skyline/TestRunnerLib/FormLookup.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestRunnerLib/FormSeen.cs b/pwiz_tools/Skyline/TestRunnerLib/FormSeen.cs index e6837fb6128..7461140e9d7 100644 --- a/pwiz_tools/Skyline/TestRunnerLib/FormSeen.cs +++ b/pwiz_tools/Skyline/TestRunnerLib/FormSeen.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestRunnerLib/InvokeSkyline.cs b/pwiz_tools/Skyline/TestRunnerLib/InvokeSkyline.cs index 83408715826..3bf5f82dad2 100644 --- a/pwiz_tools/Skyline/TestRunnerLib/InvokeSkyline.cs +++ b/pwiz_tools/Skyline/TestRunnerLib/InvokeSkyline.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.IO; using System.Reflection; using System.Text; diff --git a/pwiz_tools/Skyline/TestRunnerLib/MiniDump.cs b/pwiz_tools/Skyline/TestRunnerLib/MiniDump.cs index 1390169c7ff..16f2da8bb50 100644 --- a/pwiz_tools/Skyline/TestRunnerLib/MiniDump.cs +++ b/pwiz_tools/Skyline/TestRunnerLib/MiniDump.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tobias Rohde , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestRunnerLib/PInvoke/DwmapiTest.cs b/pwiz_tools/Skyline/TestRunnerLib/PInvoke/DwmapiTest.cs index 52d029f655b..18b2aad607c 100644 --- a/pwiz_tools/Skyline/TestRunnerLib/PInvoke/DwmapiTest.cs +++ b/pwiz_tools/Skyline/TestRunnerLib/PInvoke/DwmapiTest.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2024 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Skyline/TestRunnerLib/PInvoke/Gdi32Test.cs b/pwiz_tools/Skyline/TestRunnerLib/PInvoke/Gdi32Test.cs index 1ecfd8acebc..81b33cbbfb9 100644 --- a/pwiz_tools/Skyline/TestRunnerLib/PInvoke/Gdi32Test.cs +++ b/pwiz_tools/Skyline/TestRunnerLib/PInvoke/Gdi32Test.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2024 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Skyline/TestRunnerLib/PInvoke/Kernel32Test.cs b/pwiz_tools/Skyline/TestRunnerLib/PInvoke/Kernel32Test.cs index d0ebb904220..277f77189e5 100644 --- a/pwiz_tools/Skyline/TestRunnerLib/PInvoke/Kernel32Test.cs +++ b/pwiz_tools/Skyline/TestRunnerLib/PInvoke/Kernel32Test.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2024 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Skyline/TestRunnerLib/PInvoke/Ole32Test.cs b/pwiz_tools/Skyline/TestRunnerLib/PInvoke/Ole32Test.cs index 92da49d0f66..6d14c32f806 100644 --- a/pwiz_tools/Skyline/TestRunnerLib/PInvoke/Ole32Test.cs +++ b/pwiz_tools/Skyline/TestRunnerLib/PInvoke/Ole32Test.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2024 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Skyline/TestRunnerLib/PInvoke/Shell32Test.cs b/pwiz_tools/Skyline/TestRunnerLib/PInvoke/Shell32Test.cs index 3e2f625bb60..6a144a1b067 100644 --- a/pwiz_tools/Skyline/TestRunnerLib/PInvoke/Shell32Test.cs +++ b/pwiz_tools/Skyline/TestRunnerLib/PInvoke/Shell32Test.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2024 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Skyline/TestRunnerLib/PInvoke/User32Test.cs b/pwiz_tools/Skyline/TestRunnerLib/PInvoke/User32Test.cs index 4e818ec9b5e..f55f0c3a917 100644 --- a/pwiz_tools/Skyline/TestRunnerLib/PInvoke/User32Test.cs +++ b/pwiz_tools/Skyline/TestRunnerLib/PInvoke/User32Test.cs @@ -1,4 +1,4 @@ -/* +/* * Copyright 2024 University of Washington - Seattle, WA * * Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pwiz_tools/Skyline/TestRunnerLib/PInvoke/User32TestExtensions.cs b/pwiz_tools/Skyline/TestRunnerLib/PInvoke/User32TestExtensions.cs index d488d8d26dc..94435589eb3 100644 --- a/pwiz_tools/Skyline/TestRunnerLib/PInvoke/User32TestExtensions.cs +++ b/pwiz_tools/Skyline/TestRunnerLib/PInvoke/User32TestExtensions.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Diagnostics; using System.Windows.Forms; using pwiz.Common.SystemUtil.PInvoke; diff --git a/pwiz_tools/Skyline/TestRunnerLib/Properties/AssemblyInfo.cs b/pwiz_tools/Skyline/TestRunnerLib/Properties/AssemblyInfo.cs index def66fdb5a3..411bed67336 100644 --- a/pwiz_tools/Skyline/TestRunnerLib/Properties/AssemblyInfo.cs +++ b/pwiz_tools/Skyline/TestRunnerLib/Properties/AssemblyInfo.cs @@ -1,4 +1,4 @@ -using System.Reflection; +using System.Reflection; using System.Runtime.InteropServices; // General Information about an assembly is controlled through the following diff --git a/pwiz_tools/Skyline/TestRunnerLib/RunTests.cs b/pwiz_tools/Skyline/TestRunnerLib/RunTests.cs index 63db1a8c5d5..67237074ba4 100644 --- a/pwiz_tools/Skyline/TestRunnerLib/RunTests.cs +++ b/pwiz_tools/Skyline/TestRunnerLib/RunTests.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestRunnerLib/TestRunnerContext.cs b/pwiz_tools/Skyline/TestRunnerLib/TestRunnerContext.cs index 57a578e2d47..9b2dfd803b7 100644 --- a/pwiz_tools/Skyline/TestRunnerLib/TestRunnerContext.cs +++ b/pwiz_tools/Skyline/TestRunnerLib/TestRunnerContext.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestRunnerLib/TestRunnerFormLookup.csv b/pwiz_tools/Skyline/TestRunnerLib/TestRunnerFormLookup.csv index 5745d8d8bfa..6f6df3ab8f3 100644 --- a/pwiz_tools/Skyline/TestRunnerLib/TestRunnerFormLookup.csv +++ b/pwiz_tools/Skyline/TestRunnerLib/TestRunnerFormLookup.csv @@ -250,3 +250,4 @@ VolcanoPlotFormattingDlg,TestVolcanoPlotFormatting WebDavBrowser,TestPanoramaClient DetectionToolbarProperties, TestDetectionsPlot ImportTransitionListColumnSelectDlg,TestExistingExperimentsTutorial +PropertyGridForm, TestFilesTreePropertyGrid, TestSequenceTreePropertyGrid diff --git a/pwiz_tools/Skyline/TestRunnerLib/TestRunnerLib.csproj b/pwiz_tools/Skyline/TestRunnerLib/TestRunnerLib.csproj index dff35eefc0f..2f1de7634fa 100644 --- a/pwiz_tools/Skyline/TestRunnerLib/TestRunnerLib.csproj +++ b/pwiz_tools/Skyline/TestRunnerLib/TestRunnerLib.csproj @@ -1,4 +1,4 @@ - + Debug diff --git a/pwiz_tools/Skyline/TestSettings_x64.runsettings b/pwiz_tools/Skyline/TestSettings_x64.runsettings index 5b4fc507238..6dc1e55bde9 100644 --- a/pwiz_tools/Skyline/TestSettings_x64.runsettings +++ b/pwiz_tools/Skyline/TestSettings_x64.runsettings @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestSettings_x86.runsettings b/pwiz_tools/Skyline/TestSettings_x86.runsettings index c4312ffb4e9..664bb6968cf 100644 --- a/pwiz_tools/Skyline/TestSettings_x86.runsettings +++ b/pwiz_tools/Skyline/TestSettings_x86.runsettings @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/AbsoluteQuantTutorialTest.cs b/pwiz_tools/Skyline/TestTutorial/AbsoluteQuantTutorialTest.cs index cc809a1fd00..cf60a56e05d 100644 --- a/pwiz_tools/Skyline/TestTutorial/AbsoluteQuantTutorialTest.cs +++ b/pwiz_tools/Skyline/TestTutorial/AbsoluteQuantTutorialTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Shannon Joyner , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestTutorial/AuditLogTutorialTest.cs b/pwiz_tools/Skyline/TestTutorial/AuditLogTutorialTest.cs index 8e397a3d5aa..571e99f2a9a 100644 --- a/pwiz_tools/Skyline/TestTutorial/AuditLogTutorialTest.cs +++ b/pwiz_tools/Skyline/TestTutorial/AuditLogTutorialTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Rita Chupalov , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestTutorial/CEOptimizationTutorialTest.cs b/pwiz_tools/Skyline/TestTutorial/CEOptimizationTutorialTest.cs index 83279187849..0c9a0221e68 100644 --- a/pwiz_tools/Skyline/TestTutorial/CEOptimizationTutorialTest.cs +++ b/pwiz_tools/Skyline/TestTutorial/CEOptimizationTutorialTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Alana Killeen , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestTutorial/CustomReportsTutorialTest.cs b/pwiz_tools/Skyline/TestTutorial/CustomReportsTutorialTest.cs index 6a14dd5cb89..c56db318172 100644 --- a/pwiz_tools/Skyline/TestTutorial/CustomReportsTutorialTest.cs +++ b/pwiz_tools/Skyline/TestTutorial/CustomReportsTutorialTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Alana Killeen , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestTutorial/CustomReportsViews.data/cover.view b/pwiz_tools/Skyline/TestTutorial/CustomReportsViews.data/cover.view index c17e0072d34..7cb9f5ee460 100644 --- a/pwiz_tools/Skyline/TestTutorial/CustomReportsViews.data/cover.view +++ b/pwiz_tools/Skyline/TestTutorial/CustomReportsViews.data/cover.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/CustomReportsViews.data/p20.view b/pwiz_tools/Skyline/TestTutorial/CustomReportsViews.data/p20.view index 13b8309e444..ec552108e5f 100644 --- a/pwiz_tools/Skyline/TestTutorial/CustomReportsViews.data/p20.view +++ b/pwiz_tools/Skyline/TestTutorial/CustomReportsViews.data/p20.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/CustomReportsViews.data/p26.view b/pwiz_tools/Skyline/TestTutorial/CustomReportsViews.data/p26.view index dda533bc81f..604061f1f4b 100644 --- a/pwiz_tools/Skyline/TestTutorial/CustomReportsViews.data/p26.view +++ b/pwiz_tools/Skyline/TestTutorial/CustomReportsViews.data/p26.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/CustomReportsViews.data/p27.view b/pwiz_tools/Skyline/TestTutorial/CustomReportsViews.data/p27.view index 6e5881548fa..2ddf8a23897 100644 --- a/pwiz_tools/Skyline/TestTutorial/CustomReportsViews.data/p27.view +++ b/pwiz_tools/Skyline/TestTutorial/CustomReportsViews.data/p27.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/DiaTutorialTest.cs b/pwiz_tools/Skyline/TestTutorial/DiaTutorialTest.cs index f06d52aa021..dca897440c7 100644 --- a/pwiz_tools/Skyline/TestTutorial/DiaTutorialTest.cs +++ b/pwiz_tools/Skyline/TestTutorial/DiaTutorialTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Dario Amodei , * Mallick Lab, Department of Radiology, Stanford University * diff --git a/pwiz_tools/Skyline/TestTutorial/DiaViews.data/cover.view b/pwiz_tools/Skyline/TestTutorial/DiaViews.data/cover.view index b15af008f2a..822c81b1bb1 100644 --- a/pwiz_tools/Skyline/TestTutorial/DiaViews.data/cover.view +++ b/pwiz_tools/Skyline/TestTutorial/DiaViews.data/cover.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/DiaViews.data/p27.view b/pwiz_tools/Skyline/TestTutorial/DiaViews.data/p27.view index 925f02ddad5..cad90a7860c 100644 --- a/pwiz_tools/Skyline/TestTutorial/DiaViews.data/p27.view +++ b/pwiz_tools/Skyline/TestTutorial/DiaViews.data/p27.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/DiaViews.data/p31.view b/pwiz_tools/Skyline/TestTutorial/DiaViews.data/p31.view index b24a599e9dd..529fda5293b 100644 --- a/pwiz_tools/Skyline/TestTutorial/DiaViews.data/p31.view +++ b/pwiz_tools/Skyline/TestTutorial/DiaViews.data/p31.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/DiaViews.data/p33.view b/pwiz_tools/Skyline/TestTutorial/DiaViews.data/p33.view index 5f8b4f2eeb6..9e2822fbfbe 100644 --- a/pwiz_tools/Skyline/TestTutorial/DiaViews.data/p33.view +++ b/pwiz_tools/Skyline/TestTutorial/DiaViews.data/p33.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/DiaViews.data/p34.view b/pwiz_tools/Skyline/TestTutorial/DiaViews.data/p34.view index 0670cf05fba..b7ab07249cf 100644 --- a/pwiz_tools/Skyline/TestTutorial/DiaViews.data/p34.view +++ b/pwiz_tools/Skyline/TestTutorial/DiaViews.data/p34.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/DiaViews.data/p36.view b/pwiz_tools/Skyline/TestTutorial/DiaViews.data/p36.view index f926912fe0a..85e84683f88 100644 --- a/pwiz_tools/Skyline/TestTutorial/DiaViews.data/p36.view +++ b/pwiz_tools/Skyline/TestTutorial/DiaViews.data/p36.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/ExistingExperimentsTutorialTest.cs b/pwiz_tools/Skyline/TestTutorial/ExistingExperimentsTutorialTest.cs index 8bf51df36f2..4d7c15fe0b6 100644 --- a/pwiz_tools/Skyline/TestTutorial/ExistingExperimentsTutorialTest.cs +++ b/pwiz_tools/Skyline/TestTutorial/ExistingExperimentsTutorialTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Alana Killeen , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestTutorial/ExistingExperimentsViews.data/cover.view b/pwiz_tools/Skyline/TestTutorial/ExistingExperimentsViews.data/cover.view index 6b763dadc02..9fcf98b0cf9 100644 --- a/pwiz_tools/Skyline/TestTutorial/ExistingExperimentsViews.data/cover.view +++ b/pwiz_tools/Skyline/TestTutorial/ExistingExperimentsViews.data/cover.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/ExistingExperimentsViews.data/p10.view b/pwiz_tools/Skyline/TestTutorial/ExistingExperimentsViews.data/p10.view index 8463709e9f4..750788006df 100644 --- a/pwiz_tools/Skyline/TestTutorial/ExistingExperimentsViews.data/p10.view +++ b/pwiz_tools/Skyline/TestTutorial/ExistingExperimentsViews.data/p10.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/ExistingExperimentsViews.data/p15.view b/pwiz_tools/Skyline/TestTutorial/ExistingExperimentsViews.data/p15.view index 452934a60ae..d28ffadef3c 100644 --- a/pwiz_tools/Skyline/TestTutorial/ExistingExperimentsViews.data/p15.view +++ b/pwiz_tools/Skyline/TestTutorial/ExistingExperimentsViews.data/p15.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/ExistingExperimentsViews.data/p26.view b/pwiz_tools/Skyline/TestTutorial/ExistingExperimentsViews.data/p26.view index 65bddb4340c..c8b944330ff 100644 --- a/pwiz_tools/Skyline/TestTutorial/ExistingExperimentsViews.data/p26.view +++ b/pwiz_tools/Skyline/TestTutorial/ExistingExperimentsViews.data/p26.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/ExistingExperimentsViews.data/p28.view b/pwiz_tools/Skyline/TestTutorial/ExistingExperimentsViews.data/p28.view index be276a10606..1c968f04942 100644 --- a/pwiz_tools/Skyline/TestTutorial/ExistingExperimentsViews.data/p28.view +++ b/pwiz_tools/Skyline/TestTutorial/ExistingExperimentsViews.data/p28.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/ExistingExperimentsViews.data/p38.view b/pwiz_tools/Skyline/TestTutorial/ExistingExperimentsViews.data/p38.view index 3f35279bfe2..1e71862b5cf 100644 --- a/pwiz_tools/Skyline/TestTutorial/ExistingExperimentsViews.data/p38.view +++ b/pwiz_tools/Skyline/TestTutorial/ExistingExperimentsViews.data/p38.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/GroupedStudies1TutorialTest.cs b/pwiz_tools/Skyline/TestTutorial/GroupedStudies1TutorialTest.cs index 158a9a8c29d..8a55531803d 100644 --- a/pwiz_tools/Skyline/TestTutorial/GroupedStudies1TutorialTest.cs +++ b/pwiz_tools/Skyline/TestTutorial/GroupedStudies1TutorialTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/cover.view b/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/cover.view index 590793d07fc..6c4edf4800d 100644 --- a/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/cover.view +++ b/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/cover.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p06.view b/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p06.view index fe40f5a99e5..bc42358bdc7 100644 --- a/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p06.view +++ b/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p06.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p07.view b/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p07.view index 1d8fe80ecc0..8737c8fa0c9 100644 --- a/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p07.view +++ b/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p07.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p08.view b/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p08.view index 788a701e8cf..9699af8ab62 100644 --- a/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p08.view +++ b/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p08.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p09.view b/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p09.view index 581ead9e78a..78caaccb8d7 100644 --- a/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p09.view +++ b/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p09.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p10.view b/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p10.view index 303ce51078c..b2071f3b8e9 100644 --- a/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p10.view +++ b/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p10.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p12.view b/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p12.view index b66807f5a5e..85666b3fdf0 100644 --- a/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p12.view +++ b/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p12.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p13.view b/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p13.view index 94d3069a3ec..cf366fa10fb 100644 --- a/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p13.view +++ b/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p13.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p15.view b/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p15.view index 7e947c37b70..816a703f680 100644 --- a/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p15.view +++ b/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p15.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p28.view b/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p28.view index 2d5700c8968..ee78eb9954c 100644 --- a/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p28.view +++ b/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p28.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p33.view b/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p33.view index c7138e4ae15..012b0a0697c 100644 --- a/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p33.view +++ b/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p33.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p36.view b/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p36.view index 023afab143f..86808f53869 100644 --- a/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p36.view +++ b/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p36.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p44.view b/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p44.view index f4ef56092ee..f9b0676a6be 100644 --- a/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p44.view +++ b/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p44.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p50.view b/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p50.view index 2e344052166..4675336bef6 100644 --- a/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p50.view +++ b/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p50.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p60.view b/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p60.view index b1408d780f8..00adea93485 100644 --- a/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p60.view +++ b/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p60.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p67.view b/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p67.view index 9a7b2dda76e..319e7d69499 100644 --- a/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p67.view +++ b/pwiz_tools/Skyline/TestTutorial/GroupedStudies1Views.data/p67.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/GroupedStudiesTutorialTest.cs b/pwiz_tools/Skyline/TestTutorial/GroupedStudiesTutorialTest.cs index 34278adbb3f..695100515d3 100644 --- a/pwiz_tools/Skyline/TestTutorial/GroupedStudiesTutorialTest.cs +++ b/pwiz_tools/Skyline/TestTutorial/GroupedStudiesTutorialTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestTutorial/IrtViews.data/cover.view b/pwiz_tools/Skyline/TestTutorial/IrtViews.data/cover.view index 42bb2a0b04c..f0cfafba39f 100644 --- a/pwiz_tools/Skyline/TestTutorial/IrtViews.data/cover.view +++ b/pwiz_tools/Skyline/TestTutorial/IrtViews.data/cover.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/LibraryExplorerTutorialTest.cs b/pwiz_tools/Skyline/TestTutorial/LibraryExplorerTutorialTest.cs index 8761fd1886c..4f99f2cf711 100644 --- a/pwiz_tools/Skyline/TestTutorial/LibraryExplorerTutorialTest.cs +++ b/pwiz_tools/Skyline/TestTutorial/LibraryExplorerTutorialTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Mimi Fung , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestTutorial/LiveReportsTutorialTest.cs b/pwiz_tools/Skyline/TestTutorial/LiveReportsTutorialTest.cs index 8d732959f63..dc878e1d7b3 100644 --- a/pwiz_tools/Skyline/TestTutorial/LiveReportsTutorialTest.cs +++ b/pwiz_tools/Skyline/TestTutorial/LiveReportsTutorialTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestTutorial/LiveReportsViews.data/cover.view b/pwiz_tools/Skyline/TestTutorial/LiveReportsViews.data/cover.view index 47c492e4155..c04d4c9c051 100644 --- a/pwiz_tools/Skyline/TestTutorial/LiveReportsViews.data/cover.view +++ b/pwiz_tools/Skyline/TestTutorial/LiveReportsViews.data/cover.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/MSstatsTutorialTest.cs b/pwiz_tools/Skyline/TestTutorial/MSstatsTutorialTest.cs index aea3d64909b..47d9ba9a1f1 100644 --- a/pwiz_tools/Skyline/TestTutorial/MSstatsTutorialTest.cs +++ b/pwiz_tools/Skyline/TestTutorial/MSstatsTutorialTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Trevor Killeen , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestTutorial/MethodEditTutorialTest.cs b/pwiz_tools/Skyline/TestTutorial/MethodEditTutorialTest.cs index 0cd439e212c..a12c11ca91a 100644 --- a/pwiz_tools/Skyline/TestTutorial/MethodEditTutorialTest.cs +++ b/pwiz_tools/Skyline/TestTutorial/MethodEditTutorialTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Alana Killeen , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestTutorial/MethodEditViews.data/p07.view b/pwiz_tools/Skyline/TestTutorial/MethodEditViews.data/p07.view index aed1211c1f2..772cd8383ed 100644 --- a/pwiz_tools/Skyline/TestTutorial/MethodEditViews.data/p07.view +++ b/pwiz_tools/Skyline/TestTutorial/MethodEditViews.data/p07.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/MethodEditViews.data/p21.view b/pwiz_tools/Skyline/TestTutorial/MethodEditViews.data/p21.view index e0d1d60b021..77d224f4f17 100644 --- a/pwiz_tools/Skyline/TestTutorial/MethodEditViews.data/p21.view +++ b/pwiz_tools/Skyline/TestTutorial/MethodEditViews.data/p21.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/MethodRefinementTutorialTest.cs b/pwiz_tools/Skyline/TestTutorial/MethodRefinementTutorialTest.cs index 634d204431b..a3cb23643db 100644 --- a/pwiz_tools/Skyline/TestTutorial/MethodRefinementTutorialTest.cs +++ b/pwiz_tools/Skyline/TestTutorial/MethodRefinementTutorialTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Alana Killeen , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/cover.view b/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/cover.view index c5fabda0990..be89a629fbf 100644 --- a/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/cover.view +++ b/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/cover.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/p08.view b/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/p08.view index 73776248bd3..f36734aca24 100644 --- a/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/p08.view +++ b/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/p08.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/p09.view b/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/p09.view index 78a823fa565..2ab1adb3837 100644 --- a/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/p09.view +++ b/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/p09.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/p12.view b/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/p12.view index b7eb4d99b40..92aed954e72 100644 --- a/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/p12.view +++ b/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/p12.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/p13.view b/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/p13.view index 36461003984..f35b0cec40c 100644 --- a/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/p13.view +++ b/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/p13.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/p16.view b/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/p16.view index 4a28d3e4081..7a39fe6b61a 100644 --- a/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/p16.view +++ b/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/p16.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/p17.view b/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/p17.view index 8e33a69919d..a57e247e8f8 100644 --- a/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/p17.view +++ b/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/p17.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/p21.view b/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/p21.view index f7468711984..a8c373e016f 100644 --- a/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/p21.view +++ b/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/p21.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/p22.view b/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/p22.view index 622ecb70f19..aa363231c1f 100644 --- a/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/p22.view +++ b/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/p22.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/p26.view b/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/p26.view index 5d5ad2e7d76..f714de8088a 100644 --- a/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/p26.view +++ b/pwiz_tools/Skyline/TestTutorial/MethodRefinementViews.data/p26.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/Ms1FullScanFilteringTutorial.cs b/pwiz_tools/Skyline/TestTutorial/Ms1FullScanFilteringTutorial.cs index a2291881ade..d7a73ff62e2 100644 --- a/pwiz_tools/Skyline/TestTutorial/Ms1FullScanFilteringTutorial.cs +++ b/pwiz_tools/Skyline/TestTutorial/Ms1FullScanFilteringTutorial.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestTutorial/Ms1FullScanFilteringViews.data/cover.view b/pwiz_tools/Skyline/TestTutorial/Ms1FullScanFilteringViews.data/cover.view index 1011ee24efc..2a8ed9a256c 100644 --- a/pwiz_tools/Skyline/TestTutorial/Ms1FullScanFilteringViews.data/cover.view +++ b/pwiz_tools/Skyline/TestTutorial/Ms1FullScanFilteringViews.data/cover.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/Ms1FullScanFilteringViews.data/p13.view b/pwiz_tools/Skyline/TestTutorial/Ms1FullScanFilteringViews.data/p13.view index 0cdf918066b..8bb78fd0f3b 100644 --- a/pwiz_tools/Skyline/TestTutorial/Ms1FullScanFilteringViews.data/p13.view +++ b/pwiz_tools/Skyline/TestTutorial/Ms1FullScanFilteringViews.data/p13.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/Ms1FullScanFilteringViews.data/p15.view b/pwiz_tools/Skyline/TestTutorial/Ms1FullScanFilteringViews.data/p15.view index e2e00c70b2d..02b2b73b5fd 100644 --- a/pwiz_tools/Skyline/TestTutorial/Ms1FullScanFilteringViews.data/p15.view +++ b/pwiz_tools/Skyline/TestTutorial/Ms1FullScanFilteringViews.data/p15.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/Ms1FullScanFilteringViews.data/p34.view b/pwiz_tools/Skyline/TestTutorial/Ms1FullScanFilteringViews.data/p34.view index d76e6fa6173..ab42b630dc7 100644 --- a/pwiz_tools/Skyline/TestTutorial/Ms1FullScanFilteringViews.data/p34.view +++ b/pwiz_tools/Skyline/TestTutorial/Ms1FullScanFilteringViews.data/p34.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/Ms1FullScanFilteringViews.data/p36.view b/pwiz_tools/Skyline/TestTutorial/Ms1FullScanFilteringViews.data/p36.view index d0cf4cc0c72..2d431b4ae35 100644 --- a/pwiz_tools/Skyline/TestTutorial/Ms1FullScanFilteringViews.data/p36.view +++ b/pwiz_tools/Skyline/TestTutorial/Ms1FullScanFilteringViews.data/p36.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/Ms1FullScanFilteringViews.data/p37.view b/pwiz_tools/Skyline/TestTutorial/Ms1FullScanFilteringViews.data/p37.view index 70d17fe6f42..344aea48dcd 100644 --- a/pwiz_tools/Skyline/TestTutorial/Ms1FullScanFilteringViews.data/p37.view +++ b/pwiz_tools/Skyline/TestTutorial/Ms1FullScanFilteringViews.data/p37.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/PeakPickingTutorialTest.cs b/pwiz_tools/Skyline/TestTutorial/PeakPickingTutorialTest.cs index af64fcf4944..7f9ed1348d8 100644 --- a/pwiz_tools/Skyline/TestTutorial/PeakPickingTutorialTest.cs +++ b/pwiz_tools/Skyline/TestTutorial/PeakPickingTutorialTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Dario Amodei , * Mallick Lab, Department of Radiology, Stanford * diff --git a/pwiz_tools/Skyline/TestTutorial/Properties/AssemblyInfo.cs b/pwiz_tools/Skyline/TestTutorial/Properties/AssemblyInfo.cs index 1a6b5710351..9bc483352e4 100644 --- a/pwiz_tools/Skyline/TestTutorial/Properties/AssemblyInfo.cs +++ b/pwiz_tools/Skyline/TestTutorial/Properties/AssemblyInfo.cs @@ -1,4 +1,4 @@ -using System.Reflection; +using System.Reflection; using System.Runtime.InteropServices; // General Information about an assembly is controlled through the following diff --git a/pwiz_tools/Skyline/TestTutorial/QuasarTutorialTest.cs b/pwiz_tools/Skyline/TestTutorial/QuasarTutorialTest.cs index 2ed9bc9d4b1..4eedc7bb562 100644 --- a/pwiz_tools/Skyline/TestTutorial/QuasarTutorialTest.cs +++ b/pwiz_tools/Skyline/TestTutorial/QuasarTutorialTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestTutorial/SRMTutorialTest.cs b/pwiz_tools/Skyline/TestTutorial/SRMTutorialTest.cs index dec2e93b231..5630e647695 100644 --- a/pwiz_tools/Skyline/TestTutorial/SRMTutorialTest.cs +++ b/pwiz_tools/Skyline/TestTutorial/SRMTutorialTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Max Horowitz-Gelb , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestTutorial/SmallMolMethodDevCEOptTutorial.cs b/pwiz_tools/Skyline/TestTutorial/SmallMolMethodDevCEOptTutorial.cs index 101e21a8399..a101ea8a6f6 100644 --- a/pwiz_tools/Skyline/TestTutorial/SmallMolMethodDevCEOptTutorial.cs +++ b/pwiz_tools/Skyline/TestTutorial/SmallMolMethodDevCEOptTutorial.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestTutorial/SmallMolMethodDevCEOptViews.data/cover.view b/pwiz_tools/Skyline/TestTutorial/SmallMolMethodDevCEOptViews.data/cover.view index 73f35457af8..0749fa72f69 100644 --- a/pwiz_tools/Skyline/TestTutorial/SmallMolMethodDevCEOptViews.data/cover.view +++ b/pwiz_tools/Skyline/TestTutorial/SmallMolMethodDevCEOptViews.data/cover.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/SmallMolMethodDevCEOptViews.data/p16.view b/pwiz_tools/Skyline/TestTutorial/SmallMolMethodDevCEOptViews.data/p16.view index 6536bd84c4f..781d2b23cbb 100644 --- a/pwiz_tools/Skyline/TestTutorial/SmallMolMethodDevCEOptViews.data/p16.view +++ b/pwiz_tools/Skyline/TestTutorial/SmallMolMethodDevCEOptViews.data/p16.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/SmallMolMethodDevCEOptViews.data/p33.view b/pwiz_tools/Skyline/TestTutorial/SmallMolMethodDevCEOptViews.data/p33.view index 20d74829aea..154228c6224 100644 --- a/pwiz_tools/Skyline/TestTutorial/SmallMolMethodDevCEOptViews.data/p33.view +++ b/pwiz_tools/Skyline/TestTutorial/SmallMolMethodDevCEOptViews.data/p33.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/SmallMoleculesQuantificationTutorial.cs b/pwiz_tools/Skyline/TestTutorial/SmallMoleculesQuantificationTutorial.cs index 5c0ce5b0f02..f71721ae7dd 100644 --- a/pwiz_tools/Skyline/TestTutorial/SmallMoleculesQuantificationTutorial.cs +++ b/pwiz_tools/Skyline/TestTutorial/SmallMoleculesQuantificationTutorial.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestTutorial/SmallMoleculesTutorial.cs b/pwiz_tools/Skyline/TestTutorial/SmallMoleculesTutorial.cs index ca1f46d1d3f..76dbabf1170 100644 --- a/pwiz_tools/Skyline/TestTutorial/SmallMoleculesTutorial.cs +++ b/pwiz_tools/Skyline/TestTutorial/SmallMoleculesTutorial.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestTutorial/TargetedMSMSTutorialTest.cs b/pwiz_tools/Skyline/TestTutorial/TargetedMSMSTutorialTest.cs index 4ac19c1fc00..74fb331ac2f 100644 --- a/pwiz_tools/Skyline/TestTutorial/TargetedMSMSTutorialTest.cs +++ b/pwiz_tools/Skyline/TestTutorial/TargetedMSMSTutorialTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Daniel Broudy , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestTutorial/TargetedMSMSViews.data/cover.view b/pwiz_tools/Skyline/TestTutorial/TargetedMSMSViews.data/cover.view index 0551ec467e4..41daf92dadd 100644 --- a/pwiz_tools/Skyline/TestTutorial/TargetedMSMSViews.data/cover.view +++ b/pwiz_tools/Skyline/TestTutorial/TargetedMSMSViews.data/cover.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/TargetedMSMSViews.data/p03.view b/pwiz_tools/Skyline/TestTutorial/TargetedMSMSViews.data/p03.view index 7774d58f976..e5e45abcb7b 100644 --- a/pwiz_tools/Skyline/TestTutorial/TargetedMSMSViews.data/p03.view +++ b/pwiz_tools/Skyline/TestTutorial/TargetedMSMSViews.data/p03.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/TargetedMSMSViews.data/p20.view b/pwiz_tools/Skyline/TestTutorial/TargetedMSMSViews.data/p20.view index 8f3270dedc2..eff45ad2b6b 100644 --- a/pwiz_tools/Skyline/TestTutorial/TargetedMSMSViews.data/p20.view +++ b/pwiz_tools/Skyline/TestTutorial/TargetedMSMSViews.data/p20.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/TargetedMSMSViews.data/p21.view b/pwiz_tools/Skyline/TestTutorial/TargetedMSMSViews.data/p21.view index c0ef45fd61f..3a4b18ef36d 100644 --- a/pwiz_tools/Skyline/TestTutorial/TargetedMSMSViews.data/p21.view +++ b/pwiz_tools/Skyline/TestTutorial/TargetedMSMSViews.data/p21.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/TargetedMSMSViews.data/p24.view b/pwiz_tools/Skyline/TestTutorial/TargetedMSMSViews.data/p24.view index bbc03534a7d..ae4463e8421 100644 --- a/pwiz_tools/Skyline/TestTutorial/TargetedMSMSViews.data/p24.view +++ b/pwiz_tools/Skyline/TestTutorial/TargetedMSMSViews.data/p24.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/TargetedMSMSViews.data/p30.view b/pwiz_tools/Skyline/TestTutorial/TargetedMSMSViews.data/p30.view index a7bc30f3f02..d35292e1a4d 100644 --- a/pwiz_tools/Skyline/TestTutorial/TargetedMSMSViews.data/p30.view +++ b/pwiz_tools/Skyline/TestTutorial/TargetedMSMSViews.data/p30.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/TargetedMSMSViews.data/p31.view b/pwiz_tools/Skyline/TestTutorial/TargetedMSMSViews.data/p31.view index eccf951c299..99e09dbd5a5 100644 --- a/pwiz_tools/Skyline/TestTutorial/TargetedMSMSViews.data/p31.view +++ b/pwiz_tools/Skyline/TestTutorial/TargetedMSMSViews.data/p31.view @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestTutorial/TestTutorial.csproj b/pwiz_tools/Skyline/TestTutorial/TestTutorial.csproj index d78061d4338..a3bf5330c91 100644 --- a/pwiz_tools/Skyline/TestTutorial/TestTutorial.csproj +++ b/pwiz_tools/Skyline/TestTutorial/TestTutorial.csproj @@ -1,4 +1,4 @@ - + Debug diff --git a/pwiz_tools/Skyline/TestUtil/AbstractFunctionalTestEx.cs b/pwiz_tools/Skyline/TestUtil/AbstractFunctionalTestEx.cs index 16220054b64..6e9fcf4a0cd 100644 --- a/pwiz_tools/Skyline/TestUtil/AbstractFunctionalTestEx.cs +++ b/pwiz_tools/Skyline/TestUtil/AbstractFunctionalTestEx.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestUtil/AbstractUnitTest.cs b/pwiz_tools/Skyline/TestUtil/AbstractUnitTest.cs index 2497c847114..56e581c1189 100644 --- a/pwiz_tools/Skyline/TestUtil/AbstractUnitTest.cs +++ b/pwiz_tools/Skyline/TestUtil/AbstractUnitTest.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestUtil/AbstractUnitTestEx.cs b/pwiz_tools/Skyline/TestUtil/AbstractUnitTestEx.cs index c134aa89eb9..cf0d7ab1ccf 100644 --- a/pwiz_tools/Skyline/TestUtil/AbstractUnitTestEx.cs +++ b/pwiz_tools/Skyline/TestUtil/AbstractUnitTestEx.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestUtil/AlphaColorPickerButton.cs b/pwiz_tools/Skyline/TestUtil/AlphaColorPickerButton.cs index 8c348700138..bc694ab0795 100644 --- a/pwiz_tools/Skyline/TestUtil/AlphaColorPickerButton.cs +++ b/pwiz_tools/Skyline/TestUtil/AlphaColorPickerButton.cs @@ -1,4 +1,4 @@ -/* +/* * Original authors: Brendan MacLean * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestUtil/ArdiaTestUtil.cs b/pwiz_tools/Skyline/TestUtil/ArdiaTestUtil.cs index 7ffb39410ae..e89f422b76f 100644 --- a/pwiz_tools/Skyline/TestUtil/ArdiaTestUtil.cs +++ b/pwiz_tools/Skyline/TestUtil/ArdiaTestUtil.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers * * Copyright 2024 University of Washington - Seattle, WA diff --git a/pwiz_tools/Skyline/TestUtil/AsSmallMoleculeTestUtil.cs b/pwiz_tools/Skyline/TestUtil/AsSmallMoleculeTestUtil.cs index 4f285d22d7f..0d4c6d671ac 100644 --- a/pwiz_tools/Skyline/TestUtil/AsSmallMoleculeTestUtil.cs +++ b/pwiz_tools/Skyline/TestUtil/AsSmallMoleculeTestUtil.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brian Pratt , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestUtil/AssertEx.cs b/pwiz_tools/Skyline/TestUtil/AssertEx.cs index 5dabe720338..58fb279ba9b 100644 --- a/pwiz_tools/Skyline/TestUtil/AssertEx.cs +++ b/pwiz_tools/Skyline/TestUtil/AssertEx.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * @@ -718,7 +718,7 @@ public static TObj RoundTrip(TObj target, ref string expected) XmlSerializer ser = new XmlSerializer(typeof(TObj)); using (var memStream = new MemoryStream()) { - XmlTextWriter writer = new XmlTextWriter(memStream, Encoding.UTF8); + XmlTextWriter writer = new XmlTextWriter(memStream, new UTF8Encoding(false)); // UTF-8 without BOM writer.Formatting = Formatting.Indented; try diff --git a/pwiz_tools/Skyline/TestUtil/AuditLogUtil.cs b/pwiz_tools/Skyline/TestUtil/AuditLogUtil.cs index f2b4327295c..16bdc8d665b 100644 --- a/pwiz_tools/Skyline/TestUtil/AuditLogUtil.cs +++ b/pwiz_tools/Skyline/TestUtil/AuditLogUtil.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Tobias Rohde , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestUtil/CheckDocumentState.cs b/pwiz_tools/Skyline/TestUtil/CheckDocumentState.cs index 901170cd5b2..40e0a7262c1 100644 --- a/pwiz_tools/Skyline/TestUtil/CheckDocumentState.cs +++ b/pwiz_tools/Skyline/TestUtil/CheckDocumentState.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestUtil/CheckReportCompatibility.cs b/pwiz_tools/Skyline/TestUtil/CheckReportCompatibility.cs index b7e36f913d7..83572ba1ea9 100644 --- a/pwiz_tools/Skyline/TestUtil/CheckReportCompatibility.cs +++ b/pwiz_tools/Skyline/TestUtil/CheckReportCompatibility.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestUtil/CheckReportCompatibility.skyr b/pwiz_tools/Skyline/TestUtil/CheckReportCompatibility.skyr index 478731ec342..afa5989a72b 100644 --- a/pwiz_tools/Skyline/TestUtil/CheckReportCompatibility.skyr +++ b/pwiz_tools/Skyline/TestUtil/CheckReportCompatibility.skyr @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/DllFinderTestUtil.cs b/pwiz_tools/Skyline/TestUtil/DllFinderTestUtil.cs index 6f1ae22f917..41904ee2588 100644 --- a/pwiz_tools/Skyline/TestUtil/DllFinderTestUtil.cs +++ b/pwiz_tools/Skyline/TestUtil/DllFinderTestUtil.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestUtil/ExampleText.cs b/pwiz_tools/Skyline/TestUtil/ExampleText.cs index 0f96fcede20..bc74d620d2e 100644 --- a/pwiz_tools/Skyline/TestUtil/ExampleText.cs +++ b/pwiz_tools/Skyline/TestUtil/ExampleText.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestUtil/ExtensionTestContext.cs b/pwiz_tools/Skyline/TestUtil/ExtensionTestContext.cs index d460427ae77..7847bd9ed2e 100644 --- a/pwiz_tools/Skyline/TestUtil/ExtensionTestContext.cs +++ b/pwiz_tools/Skyline/TestUtil/ExtensionTestContext.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestUtil/FormSeen.cs b/pwiz_tools/Skyline/TestUtil/FormSeen.cs index 0901ae35e9b..5b05bb7e740 100644 --- a/pwiz_tools/Skyline/TestUtil/FormSeen.cs +++ b/pwiz_tools/Skyline/TestUtil/FormSeen.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestUtil/GitFileHelper.cs b/pwiz_tools/Skyline/TestUtil/GitFileHelper.cs index b913ea2f963..7de593cd77b 100644 --- a/pwiz_tools/Skyline/TestUtil/GitFileHelper.cs +++ b/pwiz_tools/Skyline/TestUtil/GitFileHelper.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestUtil/GridTester.cs b/pwiz_tools/Skyline/TestUtil/GridTester.cs index e24fa0f03b5..357f272ba82 100644 --- a/pwiz_tools/Skyline/TestUtil/GridTester.cs +++ b/pwiz_tools/Skyline/TestUtil/GridTester.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestUtil/KoinaTestUtil.cs b/pwiz_tools/Skyline/TestUtil/KoinaTestUtil.cs index 244b65f5f12..31d3cfe8527 100644 --- a/pwiz_tools/Skyline/TestUtil/KoinaTestUtil.cs +++ b/pwiz_tools/Skyline/TestUtil/KoinaTestUtil.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Matt Chambers , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestUtil/LongWaitDialogCanceler.cs b/pwiz_tools/Skyline/TestUtil/LongWaitDialogCanceler.cs index 2f6e4e829b3..6238116874f 100644 --- a/pwiz_tools/Skyline/TestUtil/LongWaitDialogCanceler.cs +++ b/pwiz_tools/Skyline/TestUtil/LongWaitDialogCanceler.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Nicholas Shulman , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestUtil/MemoryStreamManager.cs b/pwiz_tools/Skyline/TestUtil/MemoryStreamManager.cs index 26ae1cde4ce..8b4654fa6c5 100644 --- a/pwiz_tools/Skyline/TestUtil/MemoryStreamManager.cs +++ b/pwiz_tools/Skyline/TestUtil/MemoryStreamManager.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestUtil/MovedDirectory.cs b/pwiz_tools/Skyline/TestUtil/MovedDirectory.cs index fae1d38ea7e..069c301c5f0 100644 --- a/pwiz_tools/Skyline/TestUtil/MovedDirectory.cs +++ b/pwiz_tools/Skyline/TestUtil/MovedDirectory.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Daniel Broudy , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestUtil/MultiFormActivator.cs b/pwiz_tools/Skyline/TestUtil/MultiFormActivator.cs index caa62c29c68..404079c6b1a 100644 --- a/pwiz_tools/Skyline/TestUtil/MultiFormActivator.cs +++ b/pwiz_tools/Skyline/TestUtil/MultiFormActivator.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestUtil/PauseAndContinueForm.Designer.cs b/pwiz_tools/Skyline/TestUtil/PauseAndContinueForm.Designer.cs index 926d35f7f6f..eafac9db020 100644 --- a/pwiz_tools/Skyline/TestUtil/PauseAndContinueForm.Designer.cs +++ b/pwiz_tools/Skyline/TestUtil/PauseAndContinueForm.Designer.cs @@ -1,4 +1,4 @@ -namespace pwiz.SkylineTestUtil +namespace pwiz.SkylineTestUtil { partial class PauseAndContinueForm { diff --git a/pwiz_tools/Skyline/TestUtil/PauseAndContinueForm.cs b/pwiz_tools/Skyline/TestUtil/PauseAndContinueForm.cs index 96d90bda3b7..2ddedf6c16c 100644 --- a/pwiz_tools/Skyline/TestUtil/PauseAndContinueForm.cs +++ b/pwiz_tools/Skyline/TestUtil/PauseAndContinueForm.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestUtil/PeakMatcherTestUtil.cs b/pwiz_tools/Skyline/TestUtil/PeakMatcherTestUtil.cs index 46525a9f360..2eca09589bb 100644 --- a/pwiz_tools/Skyline/TestUtil/PeakMatcherTestUtil.cs +++ b/pwiz_tools/Skyline/TestUtil/PeakMatcherTestUtil.cs @@ -1,4 +1,4 @@ -using System; +using System; using System.Collections.Generic; using System.Linq; using System.Text; diff --git a/pwiz_tools/Skyline/TestUtil/ProcessKiller.cs b/pwiz_tools/Skyline/TestUtil/ProcessKiller.cs index 073454fb70d..bd06520d350 100644 --- a/pwiz_tools/Skyline/TestUtil/ProcessKiller.cs +++ b/pwiz_tools/Skyline/TestUtil/ProcessKiller.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Don Marsh , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestUtil/Properties/AssemblyInfo.cs b/pwiz_tools/Skyline/TestUtil/Properties/AssemblyInfo.cs index 18e4077affc..81bd406d259 100644 --- a/pwiz_tools/Skyline/TestUtil/Properties/AssemblyInfo.cs +++ b/pwiz_tools/Skyline/TestUtil/Properties/AssemblyInfo.cs @@ -1,4 +1,4 @@ -using System.Reflection; +using System.Reflection; using System.Runtime.InteropServices; // General Information about an assembly is controlled through the following diff --git a/pwiz_tools/Skyline/TestUtil/Properties/Resources.Designer.cs b/pwiz_tools/Skyline/TestUtil/Properties/Resources.Designer.cs index 28ef2d302e0..0d11f31c10b 100644 --- a/pwiz_tools/Skyline/TestUtil/Properties/Resources.Designer.cs +++ b/pwiz_tools/Skyline/TestUtil/Properties/Resources.Designer.cs @@ -1,4 +1,4 @@ -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ // // This code was generated by a tool. // Runtime Version:4.0.30319.42000 diff --git a/pwiz_tools/Skyline/TestUtil/Properties/Resources.resx b/pwiz_tools/Skyline/TestUtil/Properties/Resources.resx index 7733ed23cd5..d0dceb890ad 100644 --- a/pwiz_tools/Skyline/TestUtil/Properties/Resources.resx +++ b/pwiz_tools/Skyline/TestUtil/Properties/Resources.resx @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_1.4.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_1.4.xsd index baf1ce6b9f1..d69783d716f 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_1.4.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_1.4.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_1.5.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_1.5.xsd index b87cb3877de..ce9aee0c5d7 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_1.5.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_1.5.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_1.6.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_1.6.xsd index 2a8a0ca007d..fd16b06fcc3 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_1.6.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_1.6.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_1.7.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_1.7.xsd index a39092d9d79..0fc13919300 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_1.7.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_1.7.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_1.8.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_1.8.xsd index 0ea09296238..b4106e211e7 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_1.8.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_1.8.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_1.9.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_1.9.xsd index 3043fdc4e65..c5a72f4d82d 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_1.9.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_1.9.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_19.1.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_19.1.xsd index 3a00c79febc..fe9746af53d 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_19.1.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_19.1.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_19.11.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_19.11.xsd index 74d0371fa62..a50b874bfc2 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_19.11.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_19.11.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_19.12.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_19.12.xsd index 60170beef2f..fcbd2650b57 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_19.12.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_19.12.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_2.61.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_2.61.xsd index ba6d8a426c2..a4b58b9deb1 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_2.61.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_2.61.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_2.62.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_2.62.xsd index 2225b510dac..e23ff5c8846 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_2.62.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_2.62.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_20.1.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_20.1.xsd index 400dcd1a0ca..3e9a731a12f 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_20.1.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_20.1.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_20.11.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_20.11.xsd index abbd74c88e5..c6d2040c33c 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_20.11.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_20.11.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_20.12.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_20.12.xsd index 4566f592834..9ce1f4bef60 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_20.12.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_20.12.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_20.13.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_20.13.xsd index ef4c9160133..463d3488483 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_20.13.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_20.13.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_20.14.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_20.14.xsd index 38fc2d3455e..c2e63825179 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_20.14.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_20.14.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_20.2.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_20.2.xsd index 38fc2d3455e..c2e63825179 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_20.2.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_20.2.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_20.21.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_20.21.xsd index 087562d8600..835e9dd03b3 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_20.21.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_20.21.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_21.1.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_21.1.xsd index 33f3d7b02e1..73577115c4e 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_21.1.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_21.1.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_21.11.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_21.11.xsd index ba7b20be979..16260d3652b 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_21.11.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_21.11.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_21.12.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_21.12.xsd index 62e499550f4..08eaf61756b 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_21.12.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_21.12.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_21.2.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_21.2.xsd index 62e499550f4..08eaf61756b 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_21.2.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_21.2.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.1.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.1.xsd index 4f436e207c7..2656f3d8daf 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.1.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.1.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.11.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.11.xsd index 276d2c88b65..f015c003405 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.11.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.11.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.12.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.12.xsd index 5ba07e80713..de50e1311ee 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.12.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.12.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.13.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.13.xsd index f43e7494f93..fa2a44d9fc7 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.13.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.13.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.2.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.2.xsd index f308080fa09..605ecb9c329 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.2.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.2.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.21.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.21.xsd index f43e7494f93..fa2a44d9fc7 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.21.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.21.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.22.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.22.xsd index 35bff446ba4..5588d44e4a5 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.22.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.22.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.23.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.23.xsd index c2b6e991146..3f377170c5a 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.23.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.23.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.24.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.24.xsd index ba53e54cde4..521096e2a2f 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.24.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.24.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.25.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.25.xsd index c9c37392c5d..e549b0754ba 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.25.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_22.25.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_23.1.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_23.1.xsd index c9c37392c5d..e549b0754ba 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_23.1.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_23.1.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_23.11.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_23.11.xsd index 9e79ec65bf2..5a01894f12c 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_23.11.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_23.11.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_23.12.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_23.12.xsd index 3a4f0e64814..0b1ede176d1 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_23.12.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_23.12.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_23.13.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_23.13.xsd index b82194b12e5..e1f2b176f7d 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_23.13.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_23.13.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_24.1.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_24.1.xsd index b82194b12e5..e1f2b176f7d 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_24.1.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_24.1.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_24.11.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_24.11.xsd index 417f96fbce7..4f714db7cca 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_24.11.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_24.11.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_25.1.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_25.1.xsd index 417f96fbce7..4f714db7cca 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_25.1.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_25.1.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_25.11.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_25.11.xsd index 903ea979912..dbf36caec81 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_25.11.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_25.11.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.1.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.1.xsd index 53a9c00eaef..eb421c989dc 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.1.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.1.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.11.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.11.xsd index 4bedcdea9fd..e46c9599bdf 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.11.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.11.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.12.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.12.xsd index 77f76845269..0f99a41046f 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.12.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.12.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.5.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.5.xsd index 1203bea13b2..f1f96c4fabb 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.5.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.5.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.51.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.51.xsd index a025b8cb181..d2580d2d80e 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.51.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.51.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.52.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.52.xsd index 45ed5a79d7a..2a14c4e36bb 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.52.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.52.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.53.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.53.xsd index 7d538d1ae45..2680dc30219 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.53.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.53.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.54.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.54.xsd index 7750f482f89..1c2760559c2 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.54.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.54.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.55.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.55.xsd index aa9608a60a9..67769902a2d 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.55.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.55.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.6.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.6.xsd index 4f2a5aa69fd..9ec54695807 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.6.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.6.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.61.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.61.xsd index ebe327ff3f8..b335dd47025 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.61.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.61.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.62.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.62.xsd index 8a657cfbaaa..773a19be603 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.62.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.62.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.7.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.7.xsd index 8a657cfbaaa..773a19be603 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.7.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.7.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.71.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.71.xsd index bd062dd2252..61e4ef3c44f 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.71.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.71.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.72.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.72.xsd index a18991ae4fd..ae5555849df 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.72.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.72.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.73.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.73.xsd index 8889c9a47cf..071bb1dc792 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.73.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_3.73.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_4.11.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_4.11.xsd index 71d0727c8bc..c49e263b91b 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_4.11.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_4.11.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_4.12.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_4.12.xsd index c223149f8d6..8be9282fbe0 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_4.12.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_4.12.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_4.13.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_4.13.xsd index ca98cda4d6a..16b57b57094 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_4.13.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_4.13.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_4.2.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_4.2.xsd index ca98cda4d6a..16b57b57094 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_4.2.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_4.2.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_4.21.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_4.21.xsd index abe5fe874ce..9e2bce7c7cd 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_4.21.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_4.21.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_4.22.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_4.22.xsd index c01dfca0a69..99b5579a797 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_4.22.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_4.22.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_Current.xsd b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_Current.xsd index 903ea979912..dbf36caec81 100644 --- a/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_Current.xsd +++ b/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_Current.xsd @@ -1,4 +1,4 @@ - + diff --git a/pwiz_tools/Skyline/TestUtil/ScreenshotInfo.cs b/pwiz_tools/Skyline/TestUtil/ScreenshotInfo.cs index d531db7890a..570b672e030 100644 --- a/pwiz_tools/Skyline/TestUtil/ScreenshotInfo.cs +++ b/pwiz_tools/Skyline/TestUtil/ScreenshotInfo.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Brendan MacLean * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestUtil/ScreenshotManager.cs b/pwiz_tools/Skyline/TestUtil/ScreenshotManager.cs index 0b929e3b56b..b741e172d88 100644 --- a/pwiz_tools/Skyline/TestUtil/ScreenshotManager.cs +++ b/pwiz_tools/Skyline/TestUtil/ScreenshotManager.cs @@ -1,4 +1,4 @@ -/* +/* * Original author: Rita Chupalov , * MacCoss Lab, Department of Genome Sciences, UW * diff --git a/pwiz_tools/Skyline/TestUtil/ScreenshotPreviewForm.Designer.cs b/pwiz_tools/Skyline/TestUtil/ScreenshotPreviewForm.Designer.cs index c23c8ab1aaf..53b0fa49424 100644 --- a/pwiz_tools/Skyline/TestUtil/ScreenshotPreviewForm.Designer.cs +++ b/pwiz_tools/Skyline/TestUtil/ScreenshotPreviewForm.Designer.cs @@ -1,4 +1,4 @@ -using pwiz.Common.Controls; +using pwiz.Common.Controls; namespace pwiz.SkylineTestUtil { diff --git a/pwiz_tools/Skyline/TestUtil/ScreenshotPreviewForm.cs b/pwiz_tools/Skyline/TestUtil/ScreenshotPreviewForm.cs index c1ab7025477..d4f51dc7853 100644 --- a/pwiz_tools/Skyline/TestUtil/ScreenshotPreviewForm.cs +++ b/pwiz_tools/Skyline/TestUtil/ScreenshotPreviewForm.cs @@ -1,4 +1,4 @@ -/* +/* * Original authors: Eduardo Armendariz , * Brendan MacLean * MacCoss Lab, Department of Genome Sciences, UW diff --git a/pwiz_tools/Skyline/TestUtil/ScreenshotPreviewForm.resx b/pwiz_tools/Skyline/TestUtil/ScreenshotPreviewForm.resx index 8838497947f..b2e32745da1 100644 --- a/pwiz_tools/Skyline/TestUtil/ScreenshotPreviewForm.resx +++ b/pwiz_tools/Skyline/TestUtil/ScreenshotPreviewForm.resx @@ -1,4 +1,4 @@ - +