popgen-notes/popgen_notes.tex at master · PickrellLab/popgen-notes · GitHub

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% make clean all
% make site deploy
\documentclass[12pt,titlepage]{article}
\usepackage[authoryear]{natbib}
\bibliographystyle{genetics}
\usepackage{amsfonts}
\usepackage{amsmath}
\usepackage{amssymb}
\usepackage{graphicx}
\usepackage{rotating}
\usepackage{marginnote}
\usepackage{color}
\usepackage{fullpage}
\usepackage[hypertexnames=false]{hyperref}
\hypersetup{colorlinks=true, urlcolor=blue, citecolor=black, linkcolor=black}

\usepackage[normalem]{ulem}
\usepackage{tcolorbox}
\newcommand{\gc}[1]{{\em \color{green} #1}}
\newcommand{\sa}[1]{{\color{black} #1}}
\newcommand{\plr}[1]{{\em \color{green} (#1)}}
\newcommand{\E}{\mathbb{E}}
\renewcommand{\P}{\mathbb{P}}
\newcommand{\half}{\tfrac{1}{2}}

\newcommand{\wbar}{\overline{w}}
% New commands added by Simon:
\newcommand{\fis}{F_{\mathrm{IS}}}
\newcommand{\fit}{F_{\mathrm{IT}}}
\newcommand{\fst}{F_{\mathrm{ST}}}
\newcommand{\Wbar}{\overline{W}}

%\newcounter{Question}[section]
%\setcounter{Question}{1}

\newcounter{question}[section]   %%modified from https://www.sharelatex.com/learn/Counters
%\newenvironment{question}[1][]{\refstepcounter{question}\par   \begin{tcolorbox}
 %   \medskip \textbf{Question~\thequestion. #1}\rmfamily}{\medskip} \end{tcolorbox}


\newenvironment{question}[1][]{\refstepcounter{question}\par\medskip
   \textbf{Question~\thequestion. #1} \rmfamily}{\medskip}

%\newenvironment{question}[1][]{\refstepcounter{question}\par\medskip
%   \textbf{Question~\thequestion. #1} \rmfamily}{\medskip}


\definecolor{rev1}{rgb}{1, 0, 0}

\begin{document}

\title{Notes on Population Genetics}
\author{Graham Coop$^{1}$ \\
  \small $^1$ Department of Evolution and Ecology \& Center for Population Biology,\\
  \small University of California, Davis.\\
  \small To whom correspondence should be addressed: \texttt{gmcoop@ucdavis.edu}\\
  \small This work is licensed under a Creative Commons Attribution 3.0 Unported License.\\
  \small http://creativecommons.org/licenses/by/3.0/ \\
  \small i.e. you are free to reuse and remix this work, but please include an attribution to the original.
}

\date{}
\maketitle

\tableofcontents

\newpage

\include{chapter-01}
\include{chapter-02}
%\include{chapter-03}
\include{chapter-04}
\include{chapter-05}
\include{chapter-06}
%\include{chapter-07}
\include{chapter-08}

\end{document}