Dockerfile_SynB0

FROM leonyichencai/synb0-disco:v3.1 AS synb0
FROM ubuntu:18.04 AS base
ARG TAG_ANTS

FROM alpine AS builder
RUN mkdir -p /opt/synb0 \
  && cd /opt/synb0 \
  && wget https://raw.githubusercontent.com/MASILab/Synb0-DISCO/master/synb0-license-ccby4.0.txt

FROM base 
# Get the SyNb0 models and python executables
COPY --from=synb0 /extra/dual_channel_unet /opt/synb0/dual_channel_unet
COPY --from=synb0 /extra/atlases /opt/synb0/atlases
COPY --from=synb0 /extra/inference.py /opt/synb0/inference.py
COPY --from=synb0 /extra/model.py /opt/synb0/model.py
COPY --from=synb0 /extra/util.py /opt/synb0/util.py
COPY --from=synb0 /extra/synb0.cnf /opt/synb0/synb0.cnf
COPY --from=builder /opt/synb0/synb0-license-ccby4.0.txt /opt/synb0/synb0-license-ccby4.0.txt

RUN chmod +x /opt/synb0/inference.py