shuffled module names in signalomes() and plotSignalomeMap() output figures

[IwanParf]

Hello,
this is a great tool, kudos!
I have a minor bug to report. When running the signalomes function, the resulting module names are integers (but not necessarily consecutive numbers, e.g. 1, 2, 5, 12, 37) and are also sorted as numeric values. If one then takes its output for plotSignalomeMap(), the module names are consecutive numbers starting from 1 that are sorted as character, e.g. 1, 10, 11, 12 ..., 2, 20, 21, 22 etc.. Thus, the order in the signalome figure is not the same as the order in the balloon plot from plotSignalomeMap, if the module names exceed 9 (obviously, module numbers within the range of 1 to 9 are sorted correctly in any way). One can circumvent it by specifying module_res, then the module names are consecutive numbers and keeping the number of modules at max 9, so it will be ordered correctly.

Best,

Iwan

[HaniJieunKim]

Thanks @IwanParf for reporting the bug! I'll sort it out sometime this week.

[HaniJieunKim]

Hi @IwanParf

I wasn't able to reproduce this error. It seems alright on my side when I generate the signalome figure and the plot from plotSignalomeMap for cluster number great than 9.

Could you share a reproducible code I could test?

Many thanks,

Hani

[IwanParf]

Hello Hani,
I am sorry for replying so late. I am going to provide a code example in the following days, but here's already a picture visualizing what I meant. The order for the signalome and balloon plot is different

[IwanParf]

Now, when I provide module_res = 9 (Only 8 modules shown, I guess one is dropped due to filtering), I get consecutive numbers in the signalome and the same order in both figures (e.g. module 3 is also module 3 on the right):